BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020139
(330 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356530005|ref|XP_003533576.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 385
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 261/311 (83%), Positives = 284/311 (91%), Gaps = 7/311 (2%)
Query: 26 SGKRRREDGEIEG--SDPK----RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
SGKRRR+D E G S P+ +RAK QDV+FRI+VPSRQIGKVIGKEGHRIQKIRE+T
Sbjct: 73 SGKRRRDD-ENSGTASAPEQSAAKRAKGQDVIFRIVVPSRQIGKVIGKEGHRIQKIREDT 131
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGH 139
KATIKIADAIARHEERVIIISSKDND V+DAE AL+QIA LILK+DDS+ +ASKV AGH
Sbjct: 132 KATIKIADAIARHEERVIIISSKDNDEKVTDAEKALEQIAHLILKEDDSSLDASKVTAGH 191
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
VAANTIRLLIAGSQAG LIGMSGQNIEKLR+SSGA+I +LAPNQLPLCASAHESDRVVQ+
Sbjct: 192 VAANTIRLLIAGSQAGGLIGMSGQNIEKLRDSSGASITVLAPNQLPLCASAHESDRVVQL 251
Query: 200 SGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLIS 259
SGDVPAV+ AL EIG QLRENPPRQVISISP YNY+AIRP+QP+++PTS DYVTFEMLIS
Sbjct: 252 SGDVPAVMKALEEIGCQLRENPPRQVISISPTYNYAAIRPSQPYLDPTSVDYVTFEMLIS 311
Query: 260 ESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
E++VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHR IQFGGSAQQVALAKQRVDEYI
Sbjct: 312 ETMVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRQIQFGGSAQQVALAKQRVDEYI 371
Query: 320 YSQLIQQAGAQ 330
YSQLIQQ G Q
Sbjct: 372 YSQLIQQTGTQ 382
>gi|255541092|ref|XP_002511610.1| conserved hypothetical protein [Ricinus communis]
gi|223548790|gb|EEF50279.1| conserved hypothetical protein [Ricinus communis]
Length = 363
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/334 (77%), Positives = 294/334 (88%), Gaps = 8/334 (2%)
Query: 1 MAEQGEITVNPTVSVVTEPEPR-HDVSGKRRREDGEI----EGSDPKRRAKAQDVLFRII 55
M + G I +N TV V+ P P + + KRRR++ ++ EGS KR AKAQDV+FRI+
Sbjct: 19 MPQPGGIPMN-TVPPVSFPPPDIYAATAKRRRDEFDVADEPEGSAAKR-AKAQDVIFRIV 76
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VPSRQIGKVIGK G RIQKIREETKATIKIADAIARHEERVIIISSK++D VVSDAENAL
Sbjct: 77 VPSRQIGKVIGKVGCRIQKIREETKATIKIADAIARHEERVIIISSKESDCVVSDAENAL 136
Query: 116 QQIAALILKDDDSNSEASKV-AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
++IA LILK+D+S +E+SKV AGH+ ANTIRLLIAGSQAG LIG+SGQNIEKLRNSSGA
Sbjct: 137 KKIATLILKEDESPAESSKVVGAGHLGANTIRLLIAGSQAGSLIGVSGQNIEKLRNSSGA 196
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
TI +LAPNQLPLCASAHESDRVVQISGDVP VL A+ EIG QLRENPP+QVISISP YNY
Sbjct: 197 TITVLAPNQLPLCASAHESDRVVQISGDVPVVLKAVEEIGCQLRENPPKQVISISPTYNY 256
Query: 235 SAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ 294
+ +RP QP+V+PTSADYVT EM++SE+LVGGLIGRCGSNISRIRNESGAMIKVYGGKGE+
Sbjct: 257 ATVRPTQPYVDPTSADYVTLEMMVSETLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEK 316
Query: 295 KHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQAG 328
KHRHIQFGG+AQQVALAKQRVDEYIYSQL+QQAG
Sbjct: 317 KHRHIQFGGTAQQVALAKQRVDEYIYSQLVQQAG 350
>gi|359489188|ref|XP_002272998.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 343
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/341 (75%), Positives = 285/341 (83%), Gaps = 12/341 (3%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRRED---------GEI--EGSDPKRRAKAQD 49
MA++GE+ P + P P S KR R+D GE+ + PKRRAK QD
Sbjct: 1 MAQEGEVPRTP-IPQSEAPAPSEPTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQD 59
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
VLFRI+VPSRQIGKVIGKEG RIQKIREETKATIKIADAIARHEERVIIISSKD++NV+S
Sbjct: 60 VLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDSENVIS 119
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DAENAL Q+A+LILK+DDSN++A KV GHV AN IRLLIAGSQAGCLIGMSGQNIEKLR
Sbjct: 120 DAENALLQVASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLR 179
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
NSSGATI IL NQLPLCASAH+SDR+VQISGDVPAVL AL EIG QLRENPPRQVISIS
Sbjct: 180 NSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLRENPPRQVISIS 239
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
P YN + R +Q +++P SADYVT M+I E+LVGGLIGRCGSNISRIRNESGAMIKVYG
Sbjct: 240 PIYNPNTNRTSQQYLDPASADYVTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKVYG 299
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQAGAQ 330
GKGEQ HR IQFGGSAQQVALAKQRVDEYIYSQL+QQAGAQ
Sbjct: 300 GKGEQNHRQIQFGGSAQQVALAKQRVDEYIYSQLMQQAGAQ 340
>gi|297734587|emb|CBI16638.3| unnamed protein product [Vitis vinifera]
Length = 346
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/341 (75%), Positives = 285/341 (83%), Gaps = 12/341 (3%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRRED---------GEI--EGSDPKRRAKAQD 49
MA++GE+ P + P P S KR R+D GE+ + PKRRAK QD
Sbjct: 1 MAQEGEVPRTP-IPQSEAPAPSEPTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQD 59
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
VLFRI+VPSRQIGKVIGKEG RIQKIREETKATIKIADAIARHEERVIIISSKD++NV+S
Sbjct: 60 VLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDSENVIS 119
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DAENAL Q+A+LILK+DDSN++A KV GHV AN IRLLIAGSQAGCLIGMSGQNIEKLR
Sbjct: 120 DAENALLQVASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLR 179
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
NSSGATI IL NQLPLCASAH+SDR+VQISGDVPAVL AL EIG QLRENPPRQVISIS
Sbjct: 180 NSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLRENPPRQVISIS 239
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
P YN + R +Q +++P SADYVT M+I E+LVGGLIGRCGSNISRIRNESGAMIKVYG
Sbjct: 240 PIYNPNTNRTSQQYLDPASADYVTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKVYG 299
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQAGAQ 330
GKGEQ HR IQFGGSAQQVALAKQRVDEYIYSQL+QQAGAQ
Sbjct: 300 GKGEQNHRQIQFGGSAQQVALAKQRVDEYIYSQLMQQAGAQ 340
>gi|147855522|emb|CAN83854.1| hypothetical protein VITISV_031103 [Vitis vinifera]
Length = 321
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/344 (69%), Positives = 261/344 (75%), Gaps = 40/344 (11%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRRED---------GEI--EGSDPKRRAKAQD 49
MA++ E+ P + P P S KR R+D GE+ + PKRRAK QD
Sbjct: 1 MAQEAEVPKTP-IPQSEAPAPSESTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQD 59
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
VLFRI+VPSRQIGKVIGKEG RIQKIREETKATIKIADAIARHEERVIIISSKD++NV+S
Sbjct: 60 VLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDSENVIS 119
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DAENAL Q A+LILK+DDSN++A KV GHV AN IRLLIAGSQAGCLIGMSGQNIEKLR
Sbjct: 120 DAENALLQXASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLR 179
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
NSSGATI IL NQLPLCASAH+SDR+VQISGDVPAVL AL EIG QLR
Sbjct: 180 NSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLR----------- 228
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+ADYVT M+I E+LVGGLIGRCGSNISRIRNESGAMIKVYG
Sbjct: 229 --------------TTNLAADYVTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKVYG 274
Query: 290 GKGEQKHRHIQFGGSAQ---QVALAKQRVDEYIYSQLIQQAGAQ 330
GKGEQ HR IQFGGSAQ QVALAKQRVDEYIYSQL+QQAGAQ
Sbjct: 275 GKGEQNHRQIQFGGSAQQAYQVALAKQRVDEYIYSQLMQQAGAQ 318
>gi|224137186|ref|XP_002327061.1| predicted protein [Populus trichocarpa]
gi|222835376|gb|EEE73811.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/339 (70%), Positives = 276/339 (81%), Gaps = 11/339 (3%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRH-DVSGKRRREDGEI-EGSDPKRRAKAQDVLFRIIVPS 58
MA+ E+ +NP+ P+ V+ KRRR+D + E S KR+A+A DV+FRI+VPS
Sbjct: 1 MAQPWELQLNPSPPGTELPKLNALPVTAKRRRDDFDGGETSAAKRQARA-DVIFRIVVPS 59
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+IGKVIGK+GHRIQKIRE+TKATIKIADA+ARHEERVIIISSK+N+N +DAENALQ+I
Sbjct: 60 GKIGKVIGKQGHRIQKIREDTKATIKIADAVARHEERVIIISSKENENGATDAENALQRI 119
Query: 119 AALILKDDDSNSEASK-------VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
A LIL +DD S A V AGHVAANTIRLLIAGSQAG LIGMSGQNI KLRNS
Sbjct: 120 AELILNEDDGGSSAGGGVEIGKLVNAGHVAANTIRLLIAGSQAGSLIGMSGQNIVKLRNS 179
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
SGA I +LAPNQLPLCASA+ESDRVVQISGDVP VL AL EIG QLRENPP+QVISISP+
Sbjct: 180 SGAMITVLAPNQLPLCASAYESDRVVQISGDVPVVLKALEEIGCQLRENPPKQVISISPS 239
Query: 232 YNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
YNYSA+ P Q + +ADYVT EM++ E+++GGLIGR GSNISRIR ESGA+IKV+GGK
Sbjct: 240 YNYSAV-PFQQYAPQAAADYVTMEMMVPETMMGGLIGRSGSNISRIRVESGAVIKVHGGK 298
Query: 292 GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQAGAQ 330
G QKHRHIQ GS+QQVALAKQRVDEYIYSQL+QQAG Q
Sbjct: 299 GAQKHRHIQLAGSSQQVALAKQRVDEYIYSQLVQQAGTQ 337
>gi|307136423|gb|ADN34230.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 331
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/318 (72%), Positives = 252/318 (79%), Gaps = 32/318 (10%)
Query: 20 EPRHDVSGKRRREDGEI----EGSD---PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRI 72
EP H V+GKRRRED I + SD PKR+AKA DVLFRI+VPS+QIGKVIGK G RI
Sbjct: 32 EPGHTVTGKRRREDDLIVSNSDASDVSAPKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRI 91
Query: 73 QKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEA 132
QK+REETKATIKIADA+AR+EERVIIISSKDN+N V+DAE ALQQIAALILK+D S+ E
Sbjct: 92 QKVREETKATIKIADAVARYEERVIIISSKDNENSVTDAEKALQQIAALILKEDGSSIEE 151
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
KV GHVAANTIRLLIAGSQAG LIG SGQNIEKLRNSSGA+I ILAPNQLPLCASAHE
Sbjct: 152 LKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHE 211
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV 252
SDRVVQISGD+ AVL AL EIGNQLR+ + +YV
Sbjct: 212 SDRVVQISGDILAVLKALEEIGNQLRKT-------------------------NLAVNYV 246
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
TFEMLISE+LVGGLIG G NISRIRNESGA IKV GG+GEQ +R IQFGGSA+QVALAK
Sbjct: 247 TFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGEQNYRQIQFGGSAEQVALAK 306
Query: 313 QRVDEYIYSQLIQQAGAQ 330
QRVDEYIYSQ+I+QAG Q
Sbjct: 307 QRVDEYIYSQVIRQAGVQ 324
>gi|449445515|ref|XP_004140518.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
gi|449529952|ref|XP_004171961.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
Length = 276
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 181/236 (76%), Positives = 201/236 (85%), Gaps = 7/236 (2%)
Query: 20 EPRHDVSGKRRREDGEI----EGSD---PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRI 72
EP H V+GKRRRED I + SD PKR+AKA DVLFRI+VPS+QIGKVIGK G RI
Sbjct: 32 EPGHTVTGKRRREDDLIVSNSDASDISAPKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRI 91
Query: 73 QKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEA 132
QK+REETKATIKIADA+AR+EERVIIISSKDN+N V+DAE ALQQIAALILK+D S+ E
Sbjct: 92 QKVREETKATIKIADAVARYEERVIIISSKDNENSVTDAEKALQQIAALILKEDGSSIEE 151
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
KV GHVAANTIRLLIAGSQAG LIG SGQNIEKLRNSSGA+I ILAPNQLPLCASAHE
Sbjct: 152 LKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHE 211
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTS 248
SDRVVQISGD+ AVL AL EIGNQLR NPPRQVIS+SP YNY+ + P Q +++PTS
Sbjct: 212 SDRVVQISGDILAVLKALEEIGNQLRVNPPRQVISVSPTYNYNTMHPPQSYMDPTS 267
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 23/173 (13%)
Query: 124 KDDD---SNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
++DD SNS+AS ++A A R+++ Q G +IG G I+K+R + ATI
Sbjct: 43 REDDLIVSNSDASDISAPKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATI 102
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSA 236
I A A +RV+ IS N++ + L+ Q+ ++ + S+
Sbjct: 103 KIAD-------AVARYEERVIIISSKDNE--NSVTDAEKALQ-----QIAALILKEDGSS 148
Query: 237 IRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
I + +A+ T +LI+ S G LIG G NI ++RN SGA I +
Sbjct: 149 IEELKVGTGHVAAN--TIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILA 199
>gi|357507881|ref|XP_003624229.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355499244|gb|AES80447.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 275
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 151/209 (72%), Positives = 172/209 (82%), Gaps = 9/209 (4%)
Query: 19 PEPRHDV----SGKRRREDGEIEGSDPK-----RRAKAQDVLFRIIVPSRQIGKVIGKEG 69
P HD S KRRR+D ++ + +RAK QDV+FRI+VPS+QIGKVIGKEG
Sbjct: 60 PYSTHDAGYPSSMKRRRDDEDLGTASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEG 119
Query: 70 HRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSN 129
RIQKIRE T+A IKIADAIARHEERVIIISSKDND +V+DAE AL+QIA LILK+D+S+
Sbjct: 120 CRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEMVTDAEKALEQIANLILKEDNSS 179
Query: 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
+ASK+ AGHVAANTIRLLIAGSQAG LIGMSGQNIEKLRNSSGA I +LAP+QLPLCAS
Sbjct: 180 FDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCAS 239
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLR 218
AHESDRVVQ+SGDV V+ AL EIG QLR
Sbjct: 240 AHESDRVVQLSGDVSTVMKALEEIGCQLR 268
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 41/187 (21%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-- 202
R+++ Q G +IG G I+K+R + A I I A A +RV+ IS
Sbjct: 102 FRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIAD-------AIARHEERVIIISSKDN 154
Query: 203 ---VPAVLNALVEIGNQ-LRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV---TFE 255
V AL +I N L+E+ + +++ S + +A +V T
Sbjct: 155 DEMVTDAEKALEQIANLILKED--------NSSFDASKL----------TAGHVAANTIR 196
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKVYG-------GKGEQKHRHIQFGGSAQQV 308
+LI+ S GGLIG G NI ++RN SGAMI V + R +Q G V
Sbjct: 197 LLIAGSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTV 256
Query: 309 ALAKQRV 315
A + +
Sbjct: 257 MKALEEI 263
>gi|118482617|gb|ABK93228.1| unknown [Populus trichocarpa]
Length = 159
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/155 (76%), Positives = 135/155 (87%), Gaps = 1/155 (0%)
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS 235
I +LAPNQLPLCASA+ESDRVVQISGDVP VL AL EIG QLRENPP+QVISISP+YNYS
Sbjct: 2 ITVLAPNQLPLCASAYESDRVVQISGDVPVVLKALEEIGCQLRENPPKQVISISPSYNYS 61
Query: 236 AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK 295
A+ P Q + +ADYVT EM++ E+++GGLIGR GSNISRIR ESGA+IKV+GGKG QK
Sbjct: 62 AV-PFQQYAPQAAADYVTMEMMVPETMMGGLIGRSGSNISRIRVESGAVIKVHGGKGAQK 120
Query: 296 HRHIQFGGSAQQVALAKQRVDEYIYSQLIQQAGAQ 330
HRHIQ GS+QQVALAKQRVDEYIYSQL+QQAG Q
Sbjct: 121 HRHIQLAGSSQQVALAKQRVDEYIYSQLVQQAGTQ 155
>gi|116784616|gb|ABK23409.1| unknown [Picea sitchensis]
Length = 407
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 149/321 (46%), Positives = 200/321 (62%), Gaps = 37/321 (11%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
+G KR A+ +D++FRI+V S +IGKVIGK+G +I ++RE+T A IKIAD + E+RV
Sbjct: 80 KGFRAKRAARGRDIVFRIVVASNKIGKVIGKQGSKINQLREDTGARIKIADPVTPLEDRV 139
Query: 97 IIISSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
IIISSK + S AE AL QIA +IL++ +S +KV HV N +RLLIAGSQAG
Sbjct: 140 IIISSKGEEEEETSAAEQALIQIATVILEESGESSATAKVGTRHVGPNMMRLLIAGSQAG 199
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
LIG SG+ I+++RN SGATI IL N P+CASA E+DR+VQISG+V VL AL IG
Sbjct: 200 SLIGASGKTIKEIRNDSGATIKILPQNLSPICASASETDRLVQISGEVSQVLKALDHIGV 259
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFV------------EPTSADY------------ 251
LRE+PPR+VIS P Y Y+ + PA + + +++Y
Sbjct: 260 TLREHPPREVISTRPTY-YAGLSPANGLMVLPQTVLPGYNMQTGNSNYSYLGAAGRAAGG 318
Query: 252 ----------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQF 301
VT EM I S+ GG+IG+ G NIS+IR+ SGA++KV G K + R I F
Sbjct: 319 TISAAFALPKVTVEMKIPSSVAGGVIGKRGDNISQIRSLSGAIVKVIGEK-DGATRTIFF 377
Query: 302 GGSAQQVALAKQRVDEYIYSQ 322
G+A QVA A+ V+ +I +Q
Sbjct: 378 EGTAHQVATAQNLVNNHINAQ 398
>gi|356568533|ref|XP_003552465.1| PREDICTED: poly(rC)-binding protein 1-like [Glycine max]
Length = 127
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/124 (87%), Positives = 116/124 (93%)
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGL 266
+ AL EIG QLRENPPRQVISISP YNY+AIRP+QP+++PTS DYVTFEMLISE++VGGL
Sbjct: 1 MKALEEIGCQLRENPPRQVISISPTYNYAAIRPSQPYLDPTSVDYVTFEMLISETMVGGL 60
Query: 267 IGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQ 326
IGRCGSNISRIRNESGAMIKVYGGKGEQKHR IQFGGSAQQVALAKQRVDEYIYSQLIQQ
Sbjct: 61 IGRCGSNISRIRNESGAMIKVYGGKGEQKHRQIQFGGSAQQVALAKQRVDEYIYSQLIQQ 120
Query: 327 AGAQ 330
G Q
Sbjct: 121 TGTQ 124
>gi|302814684|ref|XP_002989025.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
gi|300143126|gb|EFJ09819.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
Length = 1034
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 164/307 (53%), Gaps = 61/307 (19%)
Query: 60 QIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSD---AENALQ 116
+IGKVIGK+G +I+K+R+ET A IKIAD + E+R ++ISSK+ VSD AE AL
Sbjct: 512 KIGKVIGKKGSQIKKLRDETGAHIKIADPMNTTEDRAVLISSKNEG--VSDRSCAELALL 569
Query: 117 QIAALILKDDDSNSEASKVAAGHVAA-NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
++ ++LKD D + ++ + H + N RLLIAGSQAG LIG +G NI+ +R SS A+
Sbjct: 570 EVVTILLKDGDGATPSAAIGPQHQGSPNLTRLLIAGSQAGSLIGKAGANIKNIRGSSSAS 629
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------ 229
+ +L +QLPLC++A E+DR+VQISG+V AV A+ + LR+NPP++ + +
Sbjct: 630 VRVLPSDQLPLCSAACETDRLVQISGEVAAVQMAIELVAANLRDNPPKETVPTNPEAKTA 689
Query: 230 -------------------------------------------PAYNYSAIRPAQPFVE- 245
PAY + A P
Sbjct: 690 YFLGIDGNTGQQVLLPHSSVAAVYGHSPSSMALYGLQPHPLAGPAYAGGVLAQAPPLYAN 749
Query: 246 -----PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQ 300
P V+ EM + S++GGLIG+ G +IS +R+ SGA IKV G K R I
Sbjct: 750 PAARLPPMLPKVSAEMSVPSSVMGGLIGKGGFHISHMRSVSGATIKVNGSKESSVERTIL 809
Query: 301 FGGSAQQ 307
F G+ +Q
Sbjct: 810 FEGTQEQ 816
>gi|302803885|ref|XP_002983695.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
gi|300148532|gb|EFJ15191.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
Length = 1020
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 166/309 (53%), Gaps = 63/309 (20%)
Query: 60 QIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSD---AENALQ 116
+IGKVIGK+G +I+K+R+ET A IKIAD + E+R ++ISSK+ SD AE AL
Sbjct: 513 KIGKVIGKKGSQIKKLRDETGAHIKIADPMNTTEDRAVLISSKNEGG--SDRTCAELALL 570
Query: 117 QIAALILKDDDSNSEASKVAAGHVAA-NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
++ ++LKD D + ++ + H + N RLLIAGSQAG LIG +G NI+ +R SS A+
Sbjct: 571 EVVTILLKDGDGATPSAAIGPQHQGSPNLTRLLIAGSQAGSLIGKAGANIKNIRGSSSAS 630
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP----- 230
+ +L +QLPLC++A E+DR+VQISG+V AV A+ + LR+NPP++ + +P
Sbjct: 631 VRVLPSDQLPLCSAACETDRLVQISGEVAAVQMAIELVAANLRDNPPKETVPTTPEAKTA 690
Query: 231 ----------------------AYNYS-------AIRPAQPFVEPTSADYV--------- 252
Y +S ++P P P A V
Sbjct: 691 YFLGIDGKTGQQVLLPHSSVAAVYGHSPSSMALYGLQP-HPLAGPAYAGGVLAQAPPLYA 749
Query: 253 -------------TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
+ EM + S++GGLIG+ G +IS +R+ SGA IKV G K R I
Sbjct: 750 NPAARLPPMLPKVSAEMSVPSSVMGGLIGKGGFHISHMRSVSGATIKVNGSKESSVERTI 809
Query: 300 QFGGSAQQV 308
F G+ +Q
Sbjct: 810 LFEGTQEQC 818
>gi|147794644|emb|CAN66855.1| hypothetical protein VITISV_039970 [Vitis vinifera]
Length = 153
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/135 (65%), Positives = 102/135 (75%), Gaps = 12/135 (8%)
Query: 1 MAEQGEITVNPTVSVVTEPEPRHDVSGKRRRED---------GEI--EGSDPKRRAKAQD 49
MA++GE+ P + P P S KR R+D GE+ + PKRRAK QD
Sbjct: 1 MAQEGEVPRTP-IPQSEAPAPSEPTSMKRPRDDDGGVIASATGEVADDHRSPKRRAKNQD 59
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
VLFRI+VPSRQIGKVIGKEG RIQKIREETKATIKIADAIARHEERVIIISSKD++NV+S
Sbjct: 60 VLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIISSKDSENVIS 119
Query: 110 DAENALQQIAALILK 124
DAENAL Q+A+LILK
Sbjct: 120 DAENALLQVASLILK 134
>gi|356566965|ref|XP_003551695.1| PREDICTED: uncharacterized protein LOC100805008 [Glycine max]
Length = 157
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 87/105 (82%), Gaps = 5/105 (4%)
Query: 26 SGKRRRED---GEIEGSDPK--RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK 80
SGKRRR+D G D +RAK QDV+FRI+VPSR IGKVIGKEGHRIQKIRE+TK
Sbjct: 47 SGKRRRDDEAPGTAAAPDQSAAKRAKGQDVIFRIVVPSRHIGKVIGKEGHRIQKIREDTK 106
Query: 81 ATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125
ATIKIADAIARHEERVIIISSKDND V+DAE AL+QIA LILKD
Sbjct: 107 ATIKIADAIARHEERVIIISSKDNDEKVTDAEKALEQIAHLILKD 151
>gi|357507883|ref|XP_003624230.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355499245|gb|AES80448.1| Poly(rC)-binding protein [Medicago truncatula]
gi|388513455|gb|AFK44789.1| unknown [Medicago truncatula]
Length = 193
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/115 (66%), Positives = 88/115 (76%), Gaps = 9/115 (7%)
Query: 19 PEPRHDV----SGKRRREDGEIEGSDPK-----RRAKAQDVLFRIIVPSRQIGKVIGKEG 69
P HD S KRRR+D ++ + +RAK QDV+FRI+VPS+QIGKVIGKEG
Sbjct: 60 PYSTHDAGYPSSMKRRRDDEDLGTASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEG 119
Query: 70 HRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
RIQKIRE T+A IKIADAIARHEERVIIISSKDND +V+DAE AL+QIA LILK
Sbjct: 120 CRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEMVTDAEKALEQIANLILK 174
>gi|357146815|ref|XP_003574121.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 777
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 155/329 (47%), Gaps = 65/329 (19%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQD----------VLFRIIVPSRQIGKVIGKEGHR 71
RH+ S R+R + + KR D ++RI+ P ++IG V+G+ GH
Sbjct: 8 RHNPSTSRKRTHFNSDDGNRKRLNSRHDDGPMSSQPIETVYRILCPGKKIGSVLGRGGHI 67
Query: 72 IQKIREETKATIKIADAIARHEERVIII-----SSKDNDNVVSDAEN----------ALQ 116
++ +REETKA I++AD+I EERVIII S+ D + N
Sbjct: 68 VKALREETKAKIRVADSIPGAEERVIIIFDYQDQSEQTDEAAQNISNNDGSENMKLQCFA 127
Query: 117 QIAALILKDDDSNSEASKVAAGH----VAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
Q A L + D S E A H AA+ T R+L+ G+Q GCL+G G I++LRN
Sbjct: 128 QDALLKIHDKISTHEDPHDGAIHEKSETAADVTARILVPGNQVGCLLGKGGSIIQQLRND 187
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL-----RENPP---- 222
+GA I IL LP CA +SD +VQISG V AL EI +L +ENPP
Sbjct: 188 TGAGIRILPSQDLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHPRKENPPLEEI 245
Query: 223 ------RQVISISP--------AYNYSAIRPAQPFVEP----------TSADYVTFEMLI 258
R+ S P Y + P P ++P A+ + +L
Sbjct: 246 IDASTQRKRESPPPLPHENLMLPYQHVDRLPPMPLLDPYRSRPSQYPVPEAEEFSVRILC 305
Query: 259 SESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ L+G +IG+ G+N+ ++ ++GA I V
Sbjct: 306 ASELIGPVIGKSGANVRQVEQQTGARILV 334
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 24/179 (13%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIISS 101
+A++ RI+ S IG VIGK G ++++ ++T A I + DA ER+I++SS
Sbjct: 295 EAEEFSVRILCASELIGPVIGKSGANVRQVEQQTGARILVQELDKDASG---ERLIVLSS 351
Query: 102 KD-NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI-RLLIAGSQAGCLIG 159
K+ + VS A I ALIL SKV+A + I RL++ S+ GC++G
Sbjct: 352 KEIPGDPVSPA------IEALILLH-------SKVSASSEKRHLITRLVVPSSKVGCILG 398
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ I ++R GA I + + P S E +VQ++G +AL EI ++LR
Sbjct: 399 EGGKVITEMRRRIGAEIRVYSKADKPKYLSFDEE--LVQVAGPPDIARDALTEIASRLR 455
>gi|414870926|tpg|DAA49483.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 541
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 158/311 (50%), Gaps = 54/311 (17%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR+R + D ++ + ++RI+ P ++IG V+G+ G ++ +REETKA I++A
Sbjct: 22 GKRKRLN--TRHDDTSMFSEPIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVA 79
Query: 87 DAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAALILKDDD 127
D+I +ERVIII + N+ +D A++AL +I I+ D+
Sbjct: 80 DSIPGADERVIIIFNYQNEPEPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEI 139
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
+ A+ + T R+L+ G+Q GCL+G G I++LR+++GA I +L LP C
Sbjct: 140 HDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQC 199
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI-------------SPA--Y 232
A +SD +VQISG V AL EI +L ++P ++ + SP +
Sbjct: 200 AL--KSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLEEIIDASTQRKRESPTLQH 257
Query: 233 NYSAI-------RPAQPFVEP---------TSADYVTFEMLISESLVGGLIGRCGSNISR 276
YS + P P ++P T + + +L + L+G +IG+ G+N+ R
Sbjct: 258 EYSMLPHLHSDHTPPIPLLDPYRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRR 317
Query: 277 IRNESGAMIKV 287
+ ++GA IKV
Sbjct: 318 VEQQTGARIKV 328
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 126/289 (43%), Gaps = 57/289 (19%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+IIIS
Sbjct: 288 TETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIIS 344
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + AE I ALIL D ++ + K ++ RL++ S+ GC+IG
Sbjct: 345 SNE-----IPAEPISPAIEALILLHDKVSAPSEK------HHSSTRLVVPSSKVGCIIGE 393
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G+ I +R +GA I + + P S D +VQ +G + RE+
Sbjct: 394 GGKVITDMRRRTGAEIRVYSKADKPKYLSF--DDELVQAAGQIHG------------RED 439
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSAD---YVTFEMLISESLVGGLIGRCGSNISRI 277
+ EPTSA T E+ I S +G ++G G N++ I
Sbjct: 440 ----------------------YREPTSATGRFLSTIELRIPNSSLGSIVGAGGVNLAEI 477
Query: 278 RNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQ 326
R SGA ++++ ++ G+ Q A+ + +I + QQ
Sbjct: 478 RQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAAQSLLQGFISANSRQQ 526
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 30/186 (16%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++VPS ++G +IG+ G I +R T A I++ S D +S +
Sbjct: 379 RLVVPSSKVGCIIGEGGKVITDMRRRTGAEIRV-------------YSKADKPKYLS-FD 424
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ L Q A I +D S A G + TI L I S G ++G G N+ ++R S
Sbjct: 425 DELVQAAGQIHGREDYREPTS--ATGRFLS-TIELRIPNSSLGSIVGAGGVNLAEIRQVS 481
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVP------AVLNALVEIGNQLRENPPRQVI 226
GA + + A A S+ VV+I G + ++L + ++ ++ P +
Sbjct: 482 GARLRLHE-------AHAGSSESVVEIQGTLDQAKAAQSLLQGFISANSRQQQQPYSSRM 534
Query: 227 SISPAY 232
+ P++
Sbjct: 535 PLYPSW 540
>gi|168013158|ref|XP_001759268.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689581|gb|EDQ75952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 148/296 (50%), Gaps = 59/296 (19%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD----- 103
DV+FRI+ P+ +IG VIGK G I+ +R+E+ A IKIADAI +ERVI+ISS D
Sbjct: 2 DVVFRILCPAPKIGSVIGKGGSIIKTLRQESGAKIKIADAIPGVDERVILISSTDRGNDR 61
Query: 104 ------NDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
N ++ A+ AL ++ A I+ D + S + S RLL+ +Q GC
Sbjct: 62 GRGKDGNSEELTPAQEALFKVHARIIADVETSGIDGSDQEEEPSQQVVTRLLVPNNQIGC 121
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
L+G G+ IE++R ++GA I +L +QLP C A +D +VQ+SGDV + AL+ I +
Sbjct: 122 LLGKGGKIIEQMRQTTGAQIRVLPKDQLPGC--ALPTDELVQVSGDVSTLKKALLFISAR 179
Query: 217 LRENPPRQ----VISISPAY----------NYSAIRPAQPF---VEP------------- 246
L+ENPPR + +PA+ +Y + F EP
Sbjct: 180 LQENPPRDRPQSYAAPAPAFVPVTDYLAKDSYRSKGTGHVFGLGPEPLEGRSWTISSGNL 239
Query: 247 ---------------TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ + + F +L +G +IG+ GS I +R ++GA IK+
Sbjct: 240 SLDRQDNRRSKEGRDSGENELVFRLLCPSDKIGSVIGKGGSIIHNLRKDTGARIKI 295
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 17/212 (8%)
Query: 19 PEPRHDVSGKRRREDGEIEGSDPKRRAKAQD-----VLFRIIVPSRQIGKVIGKEGHRIQ 73
PEP S + ++ D +R + +D ++FR++ PS +IG VIGK G I
Sbjct: 224 PEPLEGRSWTISSGNLSLDRQDNRRSKEGRDSGENELVFRLLCPSDKIGSVIGKGGSIIH 283
Query: 74 KIREETKATIKIADAIARHEERVIIISSKD-NDNVVSDAENALQQIAALILKDDDSNSEA 132
+R++T A IKIA+A+ +ERVII+S+ + + S A A+ Q+ + I
Sbjct: 284 NLRKDTGARIKIANAVPGSDERVIIVSALELPGDSFSPALEAMIQVQSRI---------T 334
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+++ T RLL+ +Q GCL+G G IE +R ++ A I +L + LP C A +
Sbjct: 335 AEMGGDKDGIITTRLLVPTNQIGCLLGKGGSIIEDMRRATRANIRVLPKDTLPRC--ALD 392
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
+D +VQI GD AL ++ ++LR N R+
Sbjct: 393 TDELVQIVGDTTVAREALFQVISRLRNNAFRE 424
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
E I+GSD + +Q V+ R++VP+ QIG ++GK G I+++R+ T A I++
Sbjct: 91 ETSGIDGSD-QEEEPSQQVVTRLLVPNNQIGCLLGKGGKIIEQMRQTTGAQIRV 143
>gi|242039239|ref|XP_002467014.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
gi|241920868|gb|EER94012.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
Length = 542
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 53/313 (16%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
S R+R+ D ++ + ++RI+ P ++IG V+G+ G ++ +REETKA I++
Sbjct: 19 SEDRKRKRLNSRHDDTSMSSEPVETIYRILCPVKKIGSVLGRGGDVVKALREETKAKIRV 78
Query: 86 ADAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAALILKDD 126
AD I +ERVIII + N ++D A++AL +I I+ D+
Sbjct: 79 ADPIPGADERVIIIFNYQNQPELTDEAAETKFSDGLGNMKPHCFAQDALLKIHDKIVADE 138
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
+ A + + T R+L+ G+Q GCL+G G I++LR+ +GA I +L LP
Sbjct: 139 IHDGVAHEEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLPSEDLPQ 198
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIR-------- 238
CA +SD +VQISG V AL EI +L ++P ++ + N S R
Sbjct: 199 CAL--KSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLEEIINASTQRKRESPILL 256
Query: 239 ---------------PAQPFVEP---------TSADYVTFEMLISESLVGGLIGRCGSNI 274
P P ++P T + + +L + L+G +IG+ G+N+
Sbjct: 257 QHENPMLPHLHSDHPPPIPLLDPYRSGLQYHVTETEEFSIRILCASELIGSVIGKSGANV 316
Query: 275 SRIRNESGAMIKV 287
R+ ++GA IKV
Sbjct: 317 KRVEQQTGARIKV 329
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 128/288 (44%), Gaps = 54/288 (18%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA E +II+S
Sbjct: 289 TETEEFSIRILCASELIGSVIGKSGANVKRVEQQTGARIKVQEIDKDASG---ESLIIVS 345
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
SK+ +E I ALIL D ++ + K ++ RL++ S+ GC++G
Sbjct: 346 SKE-----VPSEPISPAIEALILLHDKVSAPSEK------RHSSTRLVVPSSKVGCILGE 394
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G+ I ++R +GA I + + P S D +VQ +G + RE+
Sbjct: 395 GGKVITEMRRRTGAEIRVYSKADKPKYLSF--DDELVQTAGQIHG------------RED 440
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
Y + A F+ T E+ I S + ++G G N++ IR
Sbjct: 441 -------------YRGLTSATGFLS-------TIELRIPNSSLESIVGVGGVNLAEIRQI 480
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY--SQLIQQ 326
SGA ++++ ++ G+ ++ A+ + +I S+ IQQ
Sbjct: 481 SGARLRLHEAHAGSSESVVEIQGTLEEAKAAQSLLQGFISANSRSIQQ 528
>gi|195655947|gb|ACG47441.1| nucleic acid binding protein [Zea mays]
gi|414870927|tpg|DAA49484.1| TPA: nucleic acid binding protein [Zea mays]
Length = 769
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 158/311 (50%), Gaps = 54/311 (17%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR+R + D ++ + ++RI+ P ++IG V+G+ G ++ +REETKA I++A
Sbjct: 22 GKRKRLN--TRHDDTSMFSEPIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVA 79
Query: 87 DAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAALILKDDD 127
D+I +ERVIII + N+ +D A++AL +I I+ D+
Sbjct: 80 DSIPGADERVIIIFNYQNEPEPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEI 139
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
+ A+ + T R+L+ G+Q GCL+G G I++LR+++GA I +L LP C
Sbjct: 140 HDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQC 199
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI-------------SPA--Y 232
A +SD +VQISG V AL EI +L ++P ++ + SP +
Sbjct: 200 AL--KSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLEEIIDASTQRKRESPTLQH 257
Query: 233 NYSAI-------RPAQPFVEP---------TSADYVTFEMLISESLVGGLIGRCGSNISR 276
YS + P P ++P T + + +L + L+G +IG+ G+N+ R
Sbjct: 258 EYSMLPHLHSDHTPPIPLLDPYRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRR 317
Query: 277 IRNESGAMIKV 287
+ ++GA IKV
Sbjct: 318 VEQQTGARIKV 328
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 20/178 (11%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+IIIS
Sbjct: 288 TETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIIS 344
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + AE I ALIL D ++ + K ++ RL++ S+ GC+IG
Sbjct: 345 SNE-----IPAEPISPAIEALILLHDKVSAPSEK------HHSSTRLVVPSSKVGCIIGE 393
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ I +R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 394 GGKVITDMRRRTGAEIRVYSKADKPKYLSF--DDELVQVAGPPTIARGALTEIASRLR 449
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 28/166 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+IR+L A G +IG SG N+ ++ +GA I + ++ AS +R++ IS
Sbjct: 294 SIRILCASELIGSVIGKSGANVRRVEQQTGARIKV---QEIDKDASG---ERLIIISS-- 345
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
N++ P ISPA + I P+ + + +++ S V
Sbjct: 346 -----------NEIPAEP------ISPAIE-ALILLHDKVSAPSEKHHSSTRLVVPSSKV 387
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVA 309
G +IG G I+ +R +GA I+VY K +++ F QVA
Sbjct: 388 GCIIGEGGKVITDMRRRTGAEIRVYSKA--DKPKYLSFDDELVQVA 431
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 229 SPAYNYSA----IRPAQPFVEPTSAD--YVTFEMLISESLVGGLIGRCGSNISRIRNESG 282
S AY+Y+ I + + EPTSA T E+ I S +G ++G G N++ IR SG
Sbjct: 651 SDAYDYTEAAGQIHGREDYREPTSATGFLSTIELRIPNSSLGSIVGAGGVNLAEIRQVSG 710
Query: 283 AMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQ 326
A ++++ ++ G+ Q A+ + +I + QQ
Sbjct: 711 ARLRLHEAHAGSSESVVEIQGTLDQAKAAQSLLQGFISANSRQQ 754
>gi|414870928|tpg|DAA49485.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 770
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 158/311 (50%), Gaps = 54/311 (17%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR+R + D ++ + ++RI+ P ++IG V+G+ G ++ +REETKA I++A
Sbjct: 22 GKRKRLN--TRHDDTSMFSEPIETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVA 79
Query: 87 DAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAALILKDDD 127
D+I +ERVIII + N+ +D A++AL +I I+ D+
Sbjct: 80 DSIPGADERVIIIFNYQNEPEPTDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEI 139
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
+ A+ + T R+L+ G+Q GCL+G G I++LR+++GA I +L LP C
Sbjct: 140 HDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQC 199
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI-------------SPA--Y 232
A +SD +VQISG V AL EI +L ++P ++ + SP +
Sbjct: 200 AL--KSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLEEIIDASTQRKRESPTLQH 257
Query: 233 NYSAI-------RPAQPFVEP---------TSADYVTFEMLISESLVGGLIGRCGSNISR 276
YS + P P ++P T + + +L + L+G +IG+ G+N+ R
Sbjct: 258 EYSMLPHLHSDHTPPIPLLDPYRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRR 317
Query: 277 IRNESGAMIKV 287
+ ++GA IKV
Sbjct: 318 VEQQTGARIKV 328
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 20/178 (11%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+IIIS
Sbjct: 288 TETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIIS 344
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + AE I ALIL D ++ + K ++ RL++ S+ GC+IG
Sbjct: 345 SNE-----IPAEPISPAIEALILLHDKVSAPSEK------HHSSTRLVVPSSKVGCIIGE 393
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ I +R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 394 GGKVITDMRRRTGAEIRVYSKADKPKYLSF--DDELVQVAGPPTIARGALTEIASRLR 449
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 28/166 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+IR+L A G +IG SG N+ ++ +GA I + ++ AS +R++ IS
Sbjct: 294 SIRILCASELIGSVIGKSGANVRRVEQQTGARIKV---QEIDKDASG---ERLIIISS-- 345
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
N++ P ISPA + I P+ + + +++ S V
Sbjct: 346 -----------NEIPAEP------ISPAIE-ALILLHDKVSAPSEKHHSSTRLVVPSSKV 387
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVA 309
G +IG G I+ +R +GA I+VY K +++ F QVA
Sbjct: 388 GCIIGEGGKVITDMRRRTGAEIRVYSKA--DKPKYLSFDDELVQVA 431
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 229 SPAYNYSA----IRPAQPFVEPTSAD---YVTFEMLISESLVGGLIGRCGSNISRIRNES 281
S AY+Y+ I + + EPTSA T E+ I S +G ++G G N++ IR S
Sbjct: 651 SDAYDYTEAAGQIHGREDYREPTSATGRFLSTIELRIPNSSLGSIVGAGGVNLAEIRQVS 710
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQ 326
GA ++++ ++ G+ Q A+ + +I + QQ
Sbjct: 711 GARLRLHEAHAGSSESVVEIQGTLDQAKAAQSLLQGFISANSRQQ 755
>gi|224141011|ref|XP_002323868.1| predicted protein [Populus trichocarpa]
gi|222866870|gb|EEF04001.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 162/313 (51%), Gaps = 61/313 (19%)
Query: 23 HDVSGKRRREDGEIEGSDPKRRA-KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
+D+ G +RR G+ D +R +QD ++R + P+R+IG +IG+ G I+++R +TK+
Sbjct: 18 YDIGGNKRRNSGD----DRERFVIDSQDTVYRYLCPARKIGSIIGRGGEIIKQLRIDTKS 73
Query: 82 TIKIADAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDD---DSNS 130
I++ + + EERV+ I S +D+ N +S A++AL ++ ++ +D + +S
Sbjct: 74 KIRVGETVPGCEERVVTIYSPSDETNEYEDSGNYISPAQDALFRVHDKVIAEDLQVEDDS 133
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E S T +LL+ Q GC+IG GQ ++ +R+ +GA I IL LP CA +
Sbjct: 134 EGSPQV-------TAKLLVPSDQIGCIIGKGGQIVQNIRSETGAVIRILKDEHLPPCALS 186
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPAYN-YSAI------RPAQP 242
SD +VQISG+ + AL +I ++L +NP R Q + +S N YS++ A P
Sbjct: 187 --SDELVQISGEAAVLKKALYQIASRLHDNPSRSQHLLVSAVPNVYSSVGSLVGPSAAAP 244
Query: 243 FV--EPTSADYVTFE--------------------------MLISESLVGGLIGRCGSNI 274
V P Y F+ ++ + +G +IG+ G+ I
Sbjct: 245 IVGIAPLMGPYGGFKGDTGDWSRSLYSAPRDELASKEFSLRVVCPTANIGAVIGKGGTII 304
Query: 275 SRIRNESGAMIKV 287
++IR ESGA IKV
Sbjct: 305 NQIRQESGATIKV 317
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 113/212 (53%), Gaps = 17/212 (8%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ +++ R++ P+ IG VIGK G I +IR+E+ ATIK+ ++A ++ +I
Sbjct: 271 SAPRDELASKEFSLRVVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSVAEGDDCLIT 330
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ + S A ++ SE + +G ++ T RLL+ S+ GCL+
Sbjct: 331 ISAKEIYDHYSPTIEAAVRLQPRC-------SEKMERDSGLISFTT-RLLVPSSRIGCLL 382
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+++R + A I I LP AS + D +VQI+GD+ +AL++I +LR
Sbjct: 383 GKGGAIIDEMRKLTKAIIRIPRKENLPKVAS--DDDEMVQIAGDLDVAKDALIQISRRLR 440
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
N V A SAI P P++ P SA+
Sbjct: 441 AN----VFDREGA--MSAILPVLPYL-PVSAE 465
>gi|297814608|ref|XP_002875187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321025|gb|EFH51446.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 469
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 145/288 (50%), Gaps = 38/288 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS--- 101
A +D ++R + P R+ G +IG+ G ++IR ETKA ++I +A+ +ERV+ I S
Sbjct: 13 AGLEDTVYRYLCPVRKAGSIIGRGGEIAKQIRSETKANMRINEALPGCDERVVTIYSNSE 72
Query: 102 -----KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQA 154
+D+++ V A +AL ++ +I+ ++ N + T+R+L+ Q
Sbjct: 73 ETNRIEDDEDFVCPAFDALFKVHDMIVAEEFDNDGDYDNGDEYSERQTVTVRMLVPSDQI 132
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCLIG GQ I+KLRN + A I ++ N LP+CA A D ++QI GD AV AL ++
Sbjct: 133 GCLIGKGGQVIQKLRNDTNAQIRVINDN-LPICALALSHDELLQIIGDPSAVREALYQVA 191
Query: 215 NQLRENPPRQV----------------ISISPAY-----NYSAIRPAQPFVEPTSADYVT 253
L +NP R I +SPA NYSA R A A +
Sbjct: 192 FLLYDNPSRFQNYFLSSSSTLQHQPGGILMSPAITSSHKNYSAPRDA------ADARVFS 245
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQF 301
+ VGG+IG+ G I++ R ESGA IKV+ + ++ I F
Sbjct: 246 ICFICPAENVGGVIGKGGCFINQTRQESGATIKVHTPETDEDDDCIIF 293
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVI 97
S P+ A A+ I P+ +G VIGK G I + R+E+ ATIK+ ++ +I
Sbjct: 233 SAPRDAADARVFSICFICPAENVGGVIGKGGCFINQTRQESGATIKVHTPETDEDDDCII 292
Query: 98 IISSKDNDNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
IS+K+ S NA LQ + + D S+S A + R+LI SQ
Sbjct: 293 FISAKEFFEDQSPTVNAALRLQTRCSEKVGKDSSDS-----------AISTRVLIPSSQV 341
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCLIG G I ++R+ + A I I +P A E++ +VQI+G + A + AL ++
Sbjct: 342 GCLIGKGGALISEMRSVTKANIRIFQGEDVPRI--ARENEEMVQITGSLDAAIKALTQVM 399
Query: 215 NQLREN 220
+LR N
Sbjct: 400 LRLRAN 405
>gi|356531744|ref|XP_003534436.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 540
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 47/281 (16%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK---- 102
A D +FR + P R+IG VIG+ G ++++R +TKA I+I DA+ +ERV+ I S
Sbjct: 41 ADDTVFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEET 100
Query: 103 ----DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+ D++VS A++AL ++ ++ + E HV A +LL+ Q GC+I
Sbjct: 101 NHFDETDDLVSPAQDALFRVHQRVIA--EDAREDEDEERNHVTA---KLLVPSDQIGCVI 155
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G GQ ++ +R+ +GA I IL ++LP CA + +D +VQISG+ V AL +I Q+R
Sbjct: 156 GKGGQIVQNIRSETGAQIRILKDDRLPPCALS--TDELVQISGEAAVVKKALFQIAAQIR 213
Query: 219 ENPPR--QVISISPAYNYSAIRPA--------QPFV------EPTSADY----------- 251
+NP R +++ + Y+ P PFV + + D+
Sbjct: 214 DNPSRSQHLLASAVPGGYATGGPGAGAPIMGVAPFVGAYGGYKGDTGDWSRSLYPAPRDE 273
Query: 252 -----VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ + +GG+IG+ G+ I++IR +SGA IKV
Sbjct: 274 ASMREFSVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKV 314
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A ++ R + P+ IG VIGK G I +IR+++ ATIK+ + ++ +IIIS
Sbjct: 270 PRDEASMREFSVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIIS 329
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+K+ E++ ++ SE + +G + + T RLL+ S+ GCLIG
Sbjct: 330 TKEF------FEDSFSPTIEAAVRLQPRCSEKVERDSG-IVSFTTRLLVPTSRIGCLIGK 382
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G + ++R + A I IL+ + LP AS E D +VQISGD+ +ALV+ +LR N
Sbjct: 383 GGTIVTEMRRLTKANIRILSKDNLPKIAS--EDDEMVQISGDLDVAKDALVQALTRLRAN 440
>gi|413933965|gb|AFW68516.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 537
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 59/318 (18%)
Query: 22 RHDVS--GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
RH S GKR+R + D ++ + ++RI+ P+++IG V+G+ G ++ +REET
Sbjct: 15 RHSNSDDGKRKRLSSRHD--DTSMSSEPIETIYRILCPAKKIGSVLGRGGDIVKALREET 72
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAA 120
KA I++AD+I +ERVIII + N ++D A++AL +I
Sbjct: 73 KAKIRVADSIPGADERVIIIFNYQNQPELTDEAAEKQISDGLGNMKPHCFAQDALLKIHD 132
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
I+ D+ + A ++ V A R+L+ G+Q GCL+G G I++LR+ +GA I +L+
Sbjct: 133 KIVADEIYDEVAHDESSDDVTA---RILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLS 189
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR------QVISISPAYNY 234
LP CA +SD +VQISG V AL EI +L ++P + Q+I S +
Sbjct: 190 SENLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLEQIIDASTQRKH 247
Query: 235 SA--IRPAQPF--------------VEP---------TSADYVTFEMLISESLVGGLIGR 269
+ ++ P ++P + + + +L + L+G +IG+
Sbjct: 248 ESPTLQHENPMLPHLHSHHPPPIPLLDPYRSGPQYPVSETEEFSIRILCASELIGSVIGK 307
Query: 270 CGSNISRIRNESGAMIKV 287
G+N+ R+ ++GA IKV
Sbjct: 308 SGANVRRVEQQTGARIKV 325
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 51/286 (17%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
++ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+II+S
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIVS 341
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + E I ALIL D ++ + K ++ RL++ ++ GC++G
Sbjct: 342 SNE-----IPTEPISPTIEALILLHDKVSASSEK------HHSSTRLVVPSNKVGCILGE 390
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
GQ I ++R +GA I + + P S D +VQ +G + + R
Sbjct: 391 GGQVITEMRRRTGAEIRVYSKADKPKYLSF--GDELVQAAGQIHGL--------EDYRGL 440
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
P S + +S+ T E+ I S + ++G G N++ IR
Sbjct: 441 P-------SASGRFSS----------------TIELRIPNSSLESIVGVGGVNLAEIRQI 477
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQ 326
SGA ++++ ++ G+ Q A+ ++ +I + QQ
Sbjct: 478 SGARLRLHEAHAGSSESVVEIQGTLDQAKAAQSLLEGFISANSRQQ 523
>gi|413933966|gb|AFW68517.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 428
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 59/318 (18%)
Query: 22 RHDVS--GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
RH S GKR+R + D ++ + ++RI+ P+++IG V+G+ G ++ +REET
Sbjct: 15 RHSNSDDGKRKRLSSRHD--DTSMSSEPIETIYRILCPAKKIGSVLGRGGDIVKALREET 72
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAA 120
KA I++AD+I +ERVIII + N ++D A++AL +I
Sbjct: 73 KAKIRVADSIPGADERVIIIFNYQNQPELTDEAAEKQISDGLGNMKPHCFAQDALLKIHD 132
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
I+ D+ + A ++ V A R+L+ G+Q GCL+G G I++LR+ +GA I +L+
Sbjct: 133 KIVADEIYDEVAHDESSDDVTA---RILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLS 189
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR------QVISISPAYNY 234
LP CA +SD +VQISG V AL EI +L ++P + Q+I S +
Sbjct: 190 SENLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLEQIIDASTQRKH 247
Query: 235 SA--IRPAQPF--------------VEP---------TSADYVTFEMLISESLVGGLIGR 269
+ ++ P ++P + + + +L + L+G +IG+
Sbjct: 248 ESPTLQHENPMLPHLHSHHPPPIPLLDPYRSGPQYPVSETEEFSIRILCASELIGSVIGK 307
Query: 270 CGSNISRIRNESGAMIKV 287
G+N+ R+ ++GA IKV
Sbjct: 308 SGANVRRVEQQTGARIKV 325
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 20/160 (12%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
++ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+II+S
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIVS 341
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + E I ALIL D ++ + K ++ RL++ ++ GC++G
Sbjct: 342 SNE-----IPTEPISPTIEALILLHDKVSASSEK------HHSSTRLVVPSNKVGCILGE 390
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
GQ I ++R +GA I + + P S D +VQ++
Sbjct: 391 GGQVITEMRRRTGAEIRVYSKADKPKYLSF--GDELVQVT 428
>gi|413933963|gb|AFW68514.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 464
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 162/318 (50%), Gaps = 59/318 (18%)
Query: 22 RHDVS--GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
RH S GKR+R + D ++ + ++RI+ P+++IG V+G+ G ++ +REET
Sbjct: 15 RHSNSDDGKRKRLSSRHD--DTSMSSEPIETIYRILCPAKKIGSVLGRGGDIVKALREET 72
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAA 120
KA I++AD+I +ERVIII + N ++D A++AL +I
Sbjct: 73 KAKIRVADSIPGADERVIIIFNYQNQPELTDEAAEKQISDGLGNMKPHCFAQDALLKIHD 132
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
I+ D+ + A ++ V A R+L+ G+Q GCL+G G I++LR+ +GA I +L+
Sbjct: 133 KIVADEIYDEVAHDESSDDVTA---RILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLS 189
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR------QVISISPAYNY 234
LP CA +SD +VQISG V AL EI +L ++P + Q+I S +
Sbjct: 190 SENLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLEQIIDASTQRKH 247
Query: 235 SA--IRPAQPF--------------VEP---------TSADYVTFEMLISESLVGGLIGR 269
+ ++ P ++P + + + +L + L+G +IG+
Sbjct: 248 ESPTLQHENPMLPHLHSHHPPPIPLLDPYRSGPQYPVSETEEFSIRILCASELIGSVIGK 307
Query: 270 CGSNISRIRNESGAMIKV 287
G+N+ R+ ++GA IKV
Sbjct: 308 SGANVRRVEQQTGARIKV 325
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
++ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+II+S
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIVS 341
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + E I ALIL D ++ + K ++ RL++ ++ GC++G
Sbjct: 342 SNE-----IPTEPISPTIEALILLHDKVSASSEK------HHSSTRLVVPSNKVGCILGE 390
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
GQ I ++R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 391 GGQVITEMRRRTGAEIRVYSKADKPKYLSF--GDELVQVAGPPAIARGALTEIASRLRTR 448
Query: 221 PPRQVISISPAYN 233
R + ++
Sbjct: 449 TLRDTSCWTNSWT 461
>gi|449527609|ref|XP_004170802.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 546
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 151/295 (51%), Gaps = 45/295 (15%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G +RR GE + ++D ++R + P ++IG VIG+ G ++++R +TK+ I+I
Sbjct: 23 GNKRRSHGE---DRDQFVIDSEDTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIG 79
Query: 87 DAIARHEERVIIISSKDND--------NVVSDAENALQQIAALILKDD--DSNSEASKVA 136
+ + +ERVI I S N+ + VS A+ AL +I ++ DD D +SE
Sbjct: 80 ETVPGSDERVITIYSASNETNSLEESSDYVSPAQEALFKIHDRVVADDYMDEDSE----G 135
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
GH T RLL+ Q GC+IG GQ ++ +R +GA + IL + LP CA + SD +
Sbjct: 136 GGHQV--TARLLVPSDQIGCIIGKGGQIVQNIRTETGAQVRILKDDHLPRCALS--SDEL 191
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQ----VISISPAYNY--SAIRPAQ--------P 242
VQISG+ V AL +I ++L +NP R +I Y+ S + P P
Sbjct: 192 VQISGEPLIVKKALYQIASRLHDNPSRSQHLLASAIPGVYSSGGSLMAPTHGAPIMGLAP 251
Query: 243 FVEP----------TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V P S+ + ++ +GG+IG+ G+ I++IR E+ A IKV
Sbjct: 252 LVSPYGGYKAPREDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKV 306
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 16/210 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ +++ R+I P+ IG VIGK G I +IR+ETKA IK+ + ++ +I IS
Sbjct: 262 PREDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINIS 321
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
SK+ E++ L+ SE + +G + + T RLL+ S+ GCLIG
Sbjct: 322 SKEF------FEDSYSPTLEAALRLQPRCSEKVERDSG-IISFTTRLLVPTSRIGCLIGK 374
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I +LR + A I IL+ LP A E D +VQISGD+ ALV I +LR N
Sbjct: 375 GGAIITELRRLTKANIRILSKENLP--KVALEDDEMVQISGDLDVAKEALVHIVTRLRAN 432
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+ ++ SA+ P P++ P SAD
Sbjct: 433 LFDREGAL------SAVLPVLPYL-PLSAD 455
>gi|449447377|ref|XP_004141445.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 545
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 151/295 (51%), Gaps = 45/295 (15%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G +RR GE + ++D ++R + P ++IG VIG+ G ++++R +TK+ I+I
Sbjct: 23 GNKRRSHGE---DRDQFVIDSEDTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIG 79
Query: 87 DAIARHEERVIIISSKDND--------NVVSDAENALQQIAALILKDD--DSNSEASKVA 136
+ + +ERVI I S N+ + VS A+ AL +I ++ DD D +SE
Sbjct: 80 ETVPGSDERVITIYSASNETNSLEESSDYVSPAQEALFKIHDRVVADDYMDEDSE----G 135
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
GH T RLL+ Q GC+IG GQ ++ +R +GA + IL + LP CA + SD +
Sbjct: 136 GGHQV--TARLLVPSDQIGCIIGKGGQIVQNIRTETGAQVRILKDDHLPRCALS--SDEL 191
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQ----VISISPAYNY--SAIRPAQ--------P 242
VQISG+ V AL +I ++L +NP R +I Y+ S + P P
Sbjct: 192 VQISGEPLIVKKALYQIASRLHDNPSRSQHLLASAIPGVYSSGGSLMAPTHGAPIMGLAP 251
Query: 243 FVEP----------TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V P S+ + ++ +GG+IG+ G+ I++IR E+ A IKV
Sbjct: 252 LVSPYGGYKAPREDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKV 306
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 16/210 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ +++ R+I P+ IG VIGK G I +IR+ETKA IK+ + ++ +I IS
Sbjct: 262 PREDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINIS 321
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
SK+ E++ L+ SE + +G + + T RLL+ S+ GCLIG
Sbjct: 322 SKEF------FEDSYSPTLEAALRLQPRCSEKVERDSG-IISFTTRLLVPTSRIGCLIGK 374
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I +LR + A I IL+ LP A E D +VQISGD+ ALV I +LR N
Sbjct: 375 GGAIITELRRLTKANIRILSKENLP--KVALEDDEMVQISGDLDVAKEALVHIVTRLRAN 432
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+ ++ SA+ P P++ P SAD
Sbjct: 433 LFDREGAL------SAVLPVLPYL-PLSAD 455
>gi|30685269|ref|NP_851040.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30685276|ref|NP_197031.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|110737265|dbj|BAF00580.1| hypothetical protein [Arabidopsis thaliana]
gi|110738501|dbj|BAF01176.1| hypothetical protein [Arabidopsis thaliana]
gi|332004758|gb|AED92141.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004759|gb|AED92142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 548
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 159/315 (50%), Gaps = 53/315 (16%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK------ 102
D +FR + P ++IG VIG+ G ++++R +T++ I+I +AI +ERVI I S
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108
Query: 103 --DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
D + V+S A++AL +I ++ DD + SE S V A +LL+ Q GC++G
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADD-ARSEDSPEGEKQVTA---KLLVPSDQIGCILGR 164
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
GQ ++ +R+ +GA I I+ +PLCA SD ++QISG+V V AL++I ++L EN
Sbjct: 165 GGQIVQNIRSETGAQIRIVKDRNMPLCA--LNSDELIQISGEVLIVKKALLQIASRLHEN 222
Query: 221 PPR-----------------------QVISISP---AYNYSAIRPAQPFVEPTSADYVTF 254
P R +++ ++P +Y A ++P +P D
Sbjct: 223 PSRSQNLLSSSGGYPAGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRNDPPAT 282
Query: 255 EMLI----SESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVAL 310
E I + +IG+ G+ I+++R E+ A IKV + E G+ + +
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTE---------GNDCLITI 333
Query: 311 AKQRVDEYIYSQLIQ 325
+ + V E YS I+
Sbjct: 334 SAREVFEDAYSPTIE 348
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 17/224 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A + R++ P I VIGK G I ++R+ET+ATIK+ + + +I IS
Sbjct: 275 PRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 334
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+++ E+A +++ S+ + +G V+ T RLL+ S+ GC++G
Sbjct: 335 AREV------FEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTT-RLLVPSSRIGCILGK 387
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R + A I IL LP AS + D +VQISG++ AL++I ++LR N
Sbjct: 388 GGAIITEMRRMTKANIRILGKENLPKVAS--DDDEMVQISGELDVAKEALIQITSRLRAN 445
Query: 221 PPRQVISISPAYNYSAIRPAQPFVE--PTSADYVTFEMLISESL 262
V A SA+ P P+V P + D ++ S L
Sbjct: 446 ----VFDREGA--VSALMPVLPYVPVAPDAGDRFDYDSRDSRRL 483
>gi|7671496|emb|CAB89337.1| putative protein [Arabidopsis thaliana]
Length = 568
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 168/340 (49%), Gaps = 56/340 (16%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D G +RR G+ S R D +FR + P ++IG VIG+ G ++++R +T++ I
Sbjct: 27 DNGGSKRRYRGDDRDSLVIDR---DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKI 83
Query: 84 KIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
+I +AI +ERVI I S D + V+S A++AL +I ++ DD + SE S
Sbjct: 84 RIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVADD-ARSEDSPE 142
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
V A +LL+ Q GC++G GQ ++ +R+ +GA I I+ +PLCA SD
Sbjct: 143 GEKQVTA---KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCA--LNSDE 197
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPR-----------------------QVISISP-- 230
++QISG+V V AL++I ++L ENP R +++ ++P
Sbjct: 198 LIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSLMSHAGGPRLVGLAPLM 257
Query: 231 -AYNYSAIRPAQPFVEPTSADYVTFEMLI----SESLVGGLIGRCGSNISRIRNESGAMI 285
+Y A ++P +P D E I + +IG+ G+ I+++R E+ A I
Sbjct: 258 GSYGRDAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATI 317
Query: 286 KVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQ 325
KV + E G+ + ++ + V E YS I+
Sbjct: 318 KVDSSRTE---------GNDCLITISAREVFEDAYSPTIE 348
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 48/250 (19%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A + R++ P I VIGK G I ++R+ET+ATIK+ + + +I IS
Sbjct: 275 PRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 334
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+++ E+A +++ S+ + +G V+ T RLL+ S+ GC++G
Sbjct: 335 AREV------FEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTT-RLLVPSSRIGCILGK 387
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHE---------------------------- 192
G I ++R + A I IL LP AS +
Sbjct: 388 GGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQVNFMVLLLKFSLQFLLSRLRYFTW 447
Query: 193 -----SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVE-- 245
S+ VQISG++ AL++I ++LR N V A SA+ P P+V
Sbjct: 448 SVNSNSNFDVQISGELDVAKEALIQITSRLRAN----VFDREGA--VSALMPVLPYVPVA 501
Query: 246 PTSADYVTFE 255
P + D ++
Sbjct: 502 PDAGDRFDYD 511
>gi|413933964|gb|AFW68515.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 768
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 160/318 (50%), Gaps = 59/318 (18%)
Query: 22 RHDVS--GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
RH S GKR+R + D ++ + ++RI+ P+++IG V+G+ G ++ +REET
Sbjct: 15 RHSNSDDGKRKRLSSRHD--DTSMSSEPIETIYRILCPAKKIGSVLGRGGDIVKALREET 72
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSD-------------------AENALQQIAA 120
KA I++AD+I +ERVIII + N ++D A++AL +I
Sbjct: 73 KAKIRVADSIPGADERVIIIFNYQNQPELTDEAAEKQISDGLGNMKPHCFAQDALLKIHD 132
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
I+ D+ + A ++ V A R+L+ G+Q GCL+G G I++LR+ +GA I +L+
Sbjct: 133 KIVADEIYDEVAHDESSDDVTA---RILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLS 189
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR------QVISISPAYNY 234
LP CA +SD +VQISG V AL EI +L ++P + Q+I S +
Sbjct: 190 SENLPQCAL--QSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLEQIIDASTQRKH 247
Query: 235 SA-----------------------IRPAQ--PFVEPTSADYVTFEMLISESLVGGLIGR 269
+ + P + P + + + +L + L+G +IG+
Sbjct: 248 ESPTLQHENPMLPHLHSHHPPPIPLLDPYRSGPQYPVSETEEFSIRILCASELIGSVIGK 307
Query: 270 CGSNISRIRNESGAMIKV 287
G+N+ R+ ++GA IKV
Sbjct: 308 SGANVRRVEQQTGARIKV 325
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIIS 100
++ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+II+S
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIVS 341
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S + E I ALIL D ++ + K ++ RL++ ++ GC++G
Sbjct: 342 SNE-----IPTEPISPTIEALILLHDKVSASSEK------HHSSTRLVVPSNKVGCILGE 390
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
GQ I ++R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 391 GGQVITEMRRRTGAEIRVYSKADKPKYLSF--GDELVQVAGPPAIARGALTEIASRLR 446
>gi|356572762|ref|XP_003554535.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 548
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 140/285 (49%), Gaps = 51/285 (17%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-- 105
+D ++R + P R+IG VIG+ G ++++R ETKA I+I + + EERV+ I S ++
Sbjct: 40 EDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRIGETVPGCEERVVTIYSPSDETN 99
Query: 106 ------NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
N VS A++AL ++ ++ +D + T +LL+ Q GC+IG
Sbjct: 100 AVEGGGNYVSPAQDALFKVHDRVVAEDFHGDQDDDGG----QQVTAKLLVPSDQIGCVIG 155
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G ++ +R+ +GA I IL + LPLCA + SD +VQI+GD V AL +I ++L +
Sbjct: 156 KGGSIVQNIRSETGAQIRILKDDHLPLCALS--SDELVQITGDASVVKKALCQIASRLHD 213
Query: 220 NPPRQ--------------------------VISISP---AY-----NYSAIRPAQPFVE 245
NP R ++ I+P AY + P +
Sbjct: 214 NPSRSQHLLTSAVPGVYPAGGSLIGPGAGAPIVGIAPLVGAYGGYKGDTGDWPPRSMYSA 273
Query: 246 P---TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P S + ++ +GG+IG+ G I++IR ESGA IKV
Sbjct: 274 PRDEASTKEFSVRLVCPTGNIGGVIGKGGMIINQIRQESGATIKV 318
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 16/212 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ A ++ R++ P+ IG VIGK G I +IR+E+ ATIK+ + +E +I
Sbjct: 272 SAPRDEASTKEFSVRLVCPTGNIGGVIGKGGMIINQIRQESGATIKVDSSTTEGDECLIA 331
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ E ++ SE + +G + + T RLL+ S+ GCLI
Sbjct: 332 ISTKEF------FEETFSPTIEAAVRLQPRCSEKVERDSG-IISFTTRLLVPTSRIGCLI 384
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I ++R + A I I++ LP AS E D +VQISGD+ +ALV + +LR
Sbjct: 385 GKGGSIITEMRRLTKANIRIISKENLPKIAS--EDDEMVQISGDLDIAKDALVHVLTRLR 442
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
N + ++ S+ P P++ P SAD
Sbjct: 443 ANLFDREGAL------SSFLPVLPYL-PVSAD 467
>gi|302767378|ref|XP_002967109.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
gi|300165100|gb|EFJ31708.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
Length = 506
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 140/298 (46%), Gaps = 47/298 (15%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R+R G E + DV++RI+ P +IG VIGK G I+ +R ET A IK+AD
Sbjct: 25 RQRRRGGFERTPEAAAPPVDDVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADG 84
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE------ASKVAAGHVAA 142
I +ERVI IS+ + +++ KD + N E AS+ A V A
Sbjct: 85 IPGSDERVIFISASPRERREGKPRGGSKEMD----KDKEQNGEESTPLPASQEALFKVFA 140
Query: 143 N-----------------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
T RLL+ +Q GCL+G +G+ IE++R SGA I +L QLP
Sbjct: 141 RIVEGEEFDEDEDSSRNVTARLLVPSNQIGCLLGKAGKIIEQMRVESGAQIRVLPREQLP 200
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR----QVISISPAYNYSAIRPAQ 241
C A+ +D +VQ++G++ V AL I +L +NPPR Q + P + S I P
Sbjct: 201 KC--AYHTDELVQLTGELALVKKALTTISTRLYDNPPRDKPPQAGHLGP-FQESTILPGT 257
Query: 242 PF------------VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ P ++ +L +G +IG+ G I IR E+ A IK+
Sbjct: 258 LLPPGAFFPQGNASIAPVEGEFAV-RLLCPNEKIGSVIGKGGMIIRSIREETCARIKI 314
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 11/168 (6%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++ P+ +IG VIGK G I+ IREET A IKIADA+A EERVI I+S N+ +
Sbjct: 282 RLLCPNEKIGSVIGKGGMIIRSIREETCARIKIADAVANAEERVIHITS--NEVLHEQVS 339
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
AL+ + L + D ++E A T R L+ + GCL+G G I +R ++
Sbjct: 340 PALEAVLQLQSRISDPSAEKD-------GAMTTRFLVPSANIGCLLGKKGSIIADMRRNT 392
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
A I +L+ LP C AHE D +VQ+ GD+ +A++EI +LR N
Sbjct: 393 RANIRVLSKEALPKC--AHEDDELVQVVGDITVARDAVIEIITRLRAN 438
>gi|356568682|ref|XP_003552539.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 543
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 150/283 (53%), Gaps = 51/283 (18%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK---- 102
A D +FR + P R+IG VIG+ G ++++R +TKA I+I DA+ +ERV+ I S
Sbjct: 41 ADDTVFRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEET 100
Query: 103 ----DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+ ++VS A++AL ++ ++ + E HV A +LL+ Q GC+I
Sbjct: 101 NHFDETGDLVSPAQDALFRVHQRVIA--EDAREDEDDERNHVTA---KLLVPSDQIGCVI 155
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G GQ ++ +R+ +GA I IL ++LP CA ++ D +VQISG+ V AL +I Q+R
Sbjct: 156 GKGGQIVQNIRSETGAQIRILKDDRLPPCALSN--DELVQISGEAAVVKKALFQIAAQIR 213
Query: 219 ENPPRQ----------------------VISISP---AY--------NYS-AIRPAQPFV 244
+NP R ++ ++P AY ++S ++ PA P
Sbjct: 214 DNPSRSQHLLASAVPGGYAAGGPGAGAPIMGVAPFVGAYGGYKGDTGDWSRSLYPA-PRD 272
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
E + ++ + + +GG+IG+ G+ I++IR +SGA IKV
Sbjct: 273 EASMREF-SVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKV 314
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A ++ R + P+ IG VIGK G I +IR+++ ATIK+ + ++ +IIIS
Sbjct: 270 PRDEASMREFSVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIIS 329
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
K+ E++ ++ SE + +G + + T RLL+ S+ GCLIG
Sbjct: 330 MKEF------FEDSFSPTIEAAVRLQPRCSEKVERDSG-IVSFTTRLLVPTSRIGCLIGK 382
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G + ++R + A I IL+ LP AS E D +VQISGD+ +ALV+ +LR N
Sbjct: 383 GGTIVTEMRRLTKANIRILSKENLPKIAS--EDDEMVQISGDLDVAKDALVQALTRLRAN 440
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+ ++ S P P++ P S D
Sbjct: 441 LFDKERAV------SGFLPVLPYL-PASVD 463
>gi|297807547|ref|XP_002871657.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297317494|gb|EFH47916.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 544
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 166/342 (48%), Gaps = 58/342 (16%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D G +RR G+ S R D +FR + P ++IG VIG+ G ++++R +T++ I
Sbjct: 21 DNGGSKRRYRGDDRDSLVIDR---DDTVFRYLCPVKKIGSVIGRGGEIVKQLRMDTRSKI 77
Query: 84 KIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
+I +AI +ERVI I S D + V+S A++AL +I ++ DD + SE S
Sbjct: 78 RIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVADD-AQSEDSSE 136
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
V A +LL+ Q GC++G GQ ++ +R+ +GA I I+ +PLCA SD
Sbjct: 137 GEQQVTA---KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIIKDRNMPLCA--LNSDE 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPR-------------------------QVISISP 230
++QISG+V V AL +I ++L ENP R +++ I+P
Sbjct: 192 LIQISGEVLIVKKALHQIASRLHENPSRSQNLLSSAISGGYPSGSLMSHAGGPRLVGIAP 251
Query: 231 ---AYNYSAIRPAQPFVEPTSADYVTFEMLI----SESLVGGLIGRCGSNISRIRNESGA 283
+Y ++P +P D E I + +IG+ G+ I+++R E+ A
Sbjct: 252 LMGSYGRDGGDWSRPLYQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRA 311
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQ 325
IKV + E G+ + ++ + V E YS I+
Sbjct: 312 TIKVDSSRTE---------GNDCLITISAREVFEDAYSPTIE 344
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 17/224 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A + R++ P I VIGK G I ++R+ET+ATIK+ + + +I IS
Sbjct: 271 PRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 330
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+++ E+A +++ SE + +G V+ T RLL+ S+ GC++G
Sbjct: 331 AREV------FEDAYSPTIEAVMRLQPKCSEKVERDSGLVSFTT-RLLVPSSRIGCILGK 383
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R + A I IL LP AS + D +VQISG++ AL++I ++LR N
Sbjct: 384 GGAIITEMRRMTKANIRILGKENLPKVAS--DDDEMVQISGELDVAKEALIQITSRLRAN 441
Query: 221 PPRQVISISPAYNYSAIRPAQPFVE--PTSADYVTFEMLISESL 262
V A SA+ P P+V P S D + ++ S L
Sbjct: 442 ----VFDREGA--VSALMPVLPYVPVAPDSGDRLDYDSRDSRRL 479
>gi|356550877|ref|XP_003543809.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 561
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 148/310 (47%), Gaps = 54/310 (17%)
Query: 23 HDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
HD +RR G+ + ++D ++R + P R+IG VIG+ G ++++R ETKA
Sbjct: 18 HDNGPNKRRNHGD---DREQFVIDSEDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAK 74
Query: 83 IKIADAIARHEERVIIISSKDND--------NVVSDAENALQQIAALILKDDDSNSEASK 134
I+I + + EERV+ I ++ N VS A++AL ++ ++ +D +
Sbjct: 75 IRIGETVPGCEERVVTIYGPSDETNAVEGGGNYVSPAQDALFKVHDRVVAEDFHGDQDDD 134
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
T +LL+ Q GC+IG G ++ +R +GA I IL + LP+CA + SD
Sbjct: 135 GG----QQVTAKLLVPSDQIGCVIGKGGSIVQNIRGETGAQIRILKDDHLPMCALS--SD 188
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQ--------------------------VISI 228
+VQI+GD V AL +I ++L +NP R ++ I
Sbjct: 189 ELVQITGDAAVVKKALYQIASRLHDNPSRSQHLLTSAVSGVYPAGGSLIGPGAGAPIVGI 248
Query: 229 SPAY-NYSAIR-------PAQPFVEP---TSADYVTFEMLISESLVGGLIGRCGSNISRI 277
+P +Y + P + P S+ + ++ +GG+IG+ G I++I
Sbjct: 249 APLVGSYGGYKGDTGDWPPRSMYSAPRDEASSKEFSVRLVCPTGNIGGVIGKGGMIINQI 308
Query: 278 RNESGAMIKV 287
R +SGA IKV
Sbjct: 309 RQDSGATIKV 318
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 16/212 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ A +++ R++ P+ IG VIGK G I +IR+++ ATIK+ + +E +I
Sbjct: 272 SAPRDEASSKEFSVRLVCPTGNIGGVIGKGGMIINQIRQDSGATIKVDSSTIEGDECLIA 331
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ E ++ SE + +G + + T RLL+ ++ GCLI
Sbjct: 332 ISTKEF------FEETFSPTIEAAVRLQPRCSEKVERDSG-IISFTTRLLVPTTRIGCLI 384
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I +R + A I I++ LP A+E D +VQISGD+ +ALV + +LR
Sbjct: 385 GKGGSIITDMRRLTKANIRIISKENLPKI--ANEDDEMVQISGDLDVAKDALVHVLTRLR 442
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
N + ++ SA P P++ P SAD
Sbjct: 443 ANLFDREGAL------SAFLPVLPYL-PVSAD 467
>gi|115482708|ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|22128716|gb|AAM92828.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|110289325|gb|ABB47821.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639556|dbj|BAF26861.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|215694845|dbj|BAG90036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 762
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 158/315 (50%), Gaps = 63/315 (20%)
Query: 27 GKRRR-----EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
GKR+R +DG I ++ + ++RI+ P ++IG V+G+ G ++ +R+ TKA
Sbjct: 25 GKRKRLNSRHDDGTIS-------SEPIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKA 77
Query: 82 TIKIADAIARHEERVIII---SSKDND---NVVSD----------AENALQQIAALILKD 125
I++AD+I +ERVIII SS+ + N+ +D A++AL +I I D
Sbjct: 78 KIRVADSIPGADERVIIIFNYSSQTEEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAAD 137
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
+D ++ + +V R+L+ G+Q GCL+G G I++LRN +GA I +L LP
Sbjct: 138 EDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLP 197
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP---------------------PRQ 224
CA +SD +VQISG V AL EI +L ++P P Q
Sbjct: 198 QCAL--KSDELVQISGSSSLVRKALYEISTRLHQHPRKDNPPLEEIIDASTQRKHQAPPQ 255
Query: 225 VISISPAYNYSAI--RPAQPFVEP----------TSADYVTFEMLISESLVGGLIGRCGS 272
+ +P + + P P ++P A+ + ++L + +G +IG+ G
Sbjct: 256 LPHANPMLPHLHVDHSPQIPLLDPYRNRPLQYHSAEAEEFSIKILCASEHIGQVIGKSGG 315
Query: 273 NISRIRNESGAMIKV 287
N+ ++ ++GA ++V
Sbjct: 316 NVRQVEQQTGACVQV 330
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 18/177 (10%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR-HEERVIIISSKD 103
A+A++ +I+ S IG+VIGK G ++++ ++T A +++ + EER+I++SS++
Sbjct: 290 AEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQE 349
Query: 104 -NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D+ VS I ALIL +S+ S +A H T RL++ ++ GC+IG G
Sbjct: 350 IPDDPVSPT------IEALILL----HSKVSTLAENHHL--TTRLVVPSNKVGCIIGEGG 397
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL-NALVEIGNQLR 218
+ I ++R +GA I + + P S E +VQ++G +PA+ AL EI ++LR
Sbjct: 398 KVITEMRRRTGAEIRVYSKADKPKYLSFDEE--LVQVAG-LPAIARGALTEIASRLR 451
>gi|125532489|gb|EAY79054.1| hypothetical protein OsI_34164 [Oryza sativa Indica Group]
gi|125575260|gb|EAZ16544.1| hypothetical protein OsJ_32017 [Oryza sativa Japonica Group]
Length = 769
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 158/315 (50%), Gaps = 63/315 (20%)
Query: 27 GKRRR-----EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
GKR+R +DG I ++ + ++RI+ P ++IG V+G+ G ++ +R+ TKA
Sbjct: 32 GKRKRLNSRHDDGTIS-------SEPIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKA 84
Query: 82 TIKIADAIARHEERVIII---SSKDND---NVVSD----------AENALQQIAALILKD 125
I++AD+I +ERVIII SS+ + N+ +D A++AL +I I D
Sbjct: 85 KIRVADSIPGADERVIIIFNYSSQTEEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAAD 144
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
+D ++ + +V R+L+ G+Q GCL+G G I++LRN +GA I +L LP
Sbjct: 145 EDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLP 204
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP---------------------PRQ 224
CA +SD +VQISG V AL EI +L ++P P Q
Sbjct: 205 QCAL--KSDELVQISGSSSLVRKALYEISTRLHQHPRKDNPPLEEIIDASTQRKHQAPPQ 262
Query: 225 VISISPAYNYSAI--RPAQPFVEP----------TSADYVTFEMLISESLVGGLIGRCGS 272
+ +P + + P P ++P A+ + ++L + +G +IG+ G
Sbjct: 263 LPHANPMLPHLHVDHSPQIPLLDPYRNRPLQYHSAEAEEFSIKILCASEHIGQVIGKSGG 322
Query: 273 NISRIRNESGAMIKV 287
N+ ++ ++GA ++V
Sbjct: 323 NVRQVEQQTGACVQV 337
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 18/177 (10%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR-HEERVIIISSKD 103
A+A++ +I+ S IG+VIGK G ++++ ++T A +++ + EER+I++SS++
Sbjct: 297 AEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQE 356
Query: 104 -NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D+ VS I ALIL +S+ S +A H T RL++ ++ GC+IG G
Sbjct: 357 IPDDPVSPT------IEALILL----HSKVSTLAENHHL--TTRLVVPSNKVGCIIGEGG 404
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL-NALVEIGNQLR 218
+ I ++R +GA I + + P S E +VQ++G +PA+ AL EI ++LR
Sbjct: 405 KVITEMRRRTGAEIRVYSKADKPKYLSFDEE--LVQVAG-LPAIARGALTEIASRLR 458
>gi|110289326|gb|AAP54423.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 677
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 158/315 (50%), Gaps = 63/315 (20%)
Query: 27 GKRRR-----EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
GKR+R +DG I ++ + ++RI+ P ++IG V+G+ G ++ +R+ TKA
Sbjct: 25 GKRKRLNSRHDDGTIS-------SEPIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKA 77
Query: 82 TIKIADAIARHEERVIII---SSKDND---NVVSD----------AENALQQIAALILKD 125
I++AD+I +ERVIII SS+ + N+ +D A++AL +I I D
Sbjct: 78 KIRVADSIPGADERVIIIFNYSSQTEEAAQNISTDGFEDMKPHCFAQDALLKIHDKIAAD 137
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
+D ++ + +V R+L+ G+Q GCL+G G I++LRN +GA I +L LP
Sbjct: 138 EDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLP 197
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP---------------------PRQ 224
CA +SD +VQISG V AL EI +L ++P P Q
Sbjct: 198 QCAL--KSDELVQISGSSSLVRKALYEISTRLHQHPRKDNPPLEEIIDASTQRKHQAPPQ 255
Query: 225 VISISPAYNYSAI--RPAQPFVEP----------TSADYVTFEMLISESLVGGLIGRCGS 272
+ +P + + P P ++P A+ + ++L + +G +IG+ G
Sbjct: 256 LPHANPMLPHLHVDHSPQIPLLDPYRNRPLQYHSAEAEEFSIKILCASEHIGQVIGKSGG 315
Query: 273 NISRIRNESGAMIKV 287
N+ ++ ++GA ++V
Sbjct: 316 NVRQVEQQTGACVQV 330
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 18/177 (10%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR-HEERVIIISSKD 103
A+A++ +I+ S IG+VIGK G ++++ ++T A +++ + EER+I++SS++
Sbjct: 290 AEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQE 349
Query: 104 -NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D+ VS I ALIL +S+ S +A H T RL++ ++ GC+IG G
Sbjct: 350 IPDDPVSPT------IEALILL----HSKVSTLAENHHL--TTRLVVPSNKVGCIIGEGG 397
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL-NALVEIGNQLR 218
+ I ++R +GA I + + P S E +VQ++G +PA+ AL EI ++LR
Sbjct: 398 KVITEMRRRTGAEIRVYSKADKPKYLSFDEE--LVQVAG-LPAIARGALTEIASRLR 451
>gi|225452863|ref|XP_002283766.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|296082939|emb|CBI22240.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 24/211 (11%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D G +RR G+ DP + +D ++R + P R+IG +IG+ G ++++R +TK+ I
Sbjct: 20 DNGGNKRRNPGD--DRDPFT-IEPEDTVYRYLCPGRKIGSIIGRGGEIVKQLRVDTKSKI 76
Query: 84 KIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILKDD---DSNSEA 132
+I + + EERV+ I S D+D VS A++AL ++ ++ ++ + + EA
Sbjct: 77 RIGETVPGCEERVVTIYSSSDETNAFDDSDTFVSPAQDALFRVHDRVVSEEVHGEDSEEA 136
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
S+V T+RLL+ Q GC+IG GQ I+ +R+ SGA + IL + LP CA +
Sbjct: 137 SQV--------TVRLLVPSDQIGCVIGKGGQIIQSIRSESGAQVRILKDDHLPSCALS-- 186
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
SD +VQISG+ V AL +I ++L +NP R
Sbjct: 187 SDELVQISGEPSLVRKALYQIASRLHDNPSR 217
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 112/213 (52%), Gaps = 17/213 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVI 97
S P+ A +++ R++ P IG VIGK G I +IR+E+ A IK+ + + A ++ +I
Sbjct: 271 SAPRDEASSKEFSLRLVCPIGNIGGVIGKGGVIINQIRQESGAAIKVDSTSAAEADDCLI 330
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
IS+K+ E+ ++ SE + +G + + T RLL+ S+ GCL
Sbjct: 331 AISAKEF------FEDTFSPTIEAAVRLQPRCSEKVERDSG-IVSFTTRLLVPTSRIGCL 383
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I ++R + A I IL+ LP AS E D +VQI+GD+ +AL+++ +L
Sbjct: 384 IGKGGAIITEMRKLTKANIRILSKENLPKVAS--EDDEMVQIAGDLDVAKDALIQVTTRL 441
Query: 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
R N + ++ SA P P++ P +AD
Sbjct: 442 RANLFDREGAV------SAFVPVLPYL-PMAAD 467
>gi|125544080|gb|EAY90219.1| hypothetical protein OsI_11787 [Oryza sativa Indica Group]
Length = 542
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 154/306 (50%), Gaps = 58/306 (18%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + PSR+IG +IG+ G +++R +T+A I+I
Sbjct: 23 GKRRNPGDDTYAPGP------DDTVYRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIG 76
Query: 87 DAIARHEERVI-IISSKDNDNVVSDAEN-------ALQQIAALILKDDDSNSEASKVAAG 138
++++ +ERVI I SS N + DAE+ AL ++ + DDD +E S
Sbjct: 77 ESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKLSIDDDIGNEESDEGLA 136
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC+IG G I+ +R+ +GA I +L+ LP CA + D ++Q
Sbjct: 137 QV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPACAIS--GDELLQ 191
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQ-------------------------VISISP--- 230
ISGD V AL+++ ++L +NP R V+ I+P
Sbjct: 192 ISGDSTVVRKALLQVSSRLHDNPSRSQHLLASSMTQPYPVGSHLGSSSTAPVVGITPLIS 251
Query: 231 ---------AYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
A ++ +I QP E +SA + +L + S VGG+IG+ G I +IR ES
Sbjct: 252 SYGGYKGDVAGDWPSI--YQPRREESSAKEFSLRLLCAASNVGGVIGKGGGIIKQIRQES 309
Query: 282 GAMIKV 287
GA IKV
Sbjct: 310 GAFIKV 315
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 106/194 (54%), Gaps = 18/194 (9%)
Query: 34 GEIEGSDP------KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
G++ G P + + A++ R++ + +G VIGK G I++IR+E+ A IK+ D
Sbjct: 258 GDVAGDWPSIYQPRREESSAKEFSLRLLCAASNVGGVIGKGGGIIKQIRQESGAFIKV-D 316
Query: 88 AIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
+ ++ +I +S+K+ ++ VS NA + + D S + + T R
Sbjct: 317 SSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCSEKTDPESA--------IPSYTTR 368
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LL++ S+ GCLIG G I ++R +S A I IL+ +P A+ E + +VQISGD+ V
Sbjct: 369 LLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA--EDEEMVQISGDLDVV 426
Query: 207 LNALVEIGNQLREN 220
+AL++I +L+ N
Sbjct: 427 RHALLQITTRLKAN 440
>gi|115453243|ref|NP_001050222.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|18921324|gb|AAL82529.1|AC084766_15 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|108708431|gb|ABF96226.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|108708432|gb|ABF96227.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|113548693|dbj|BAF12136.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|125586438|gb|EAZ27102.1| hypothetical protein OsJ_11034 [Oryza sativa Japonica Group]
gi|215686826|dbj|BAG89676.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215695345|dbj|BAG90536.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704897|dbj|BAG94925.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 542
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 154/306 (50%), Gaps = 58/306 (18%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + PSR+IG +IG+ G +++R +T+A I+I
Sbjct: 23 GKRRNPGDDTYAPGP------DDTVYRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIG 76
Query: 87 DAIARHEERVI-IISSKDNDNVVSDAEN-------ALQQIAALILKDDDSNSEASKVAAG 138
++++ +ERVI I SS N + DAE+ AL ++ + DDD +E S
Sbjct: 77 ESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKLSIDDDIGNEESDEGLA 136
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC+IG G I+ +R+ +GA I +L+ LP CA + D ++Q
Sbjct: 137 QV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPACAIS--GDELLQ 191
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQ-------------------------VISISP--- 230
ISGD V AL+++ ++L +NP R V+ I+P
Sbjct: 192 ISGDSTVVRKALLQVSSRLHDNPSRSQHLLASSMTQPYPVGSHLGSSSTAPVVGITPLIS 251
Query: 231 ---------AYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
A ++ +I QP E +SA + +L + S VGG+IG+ G I +IR ES
Sbjct: 252 SYGGYKGDVAGDWPSI--YQPRREESSAKEFSLRLLCAASNVGGVIGKGGGIIKQIRQES 309
Query: 282 GAMIKV 287
GA IKV
Sbjct: 310 GAFIKV 315
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 106/194 (54%), Gaps = 18/194 (9%)
Query: 34 GEIEGSDP------KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
G++ G P + + A++ R++ + +G VIGK G I++IR+E+ A IK+ D
Sbjct: 258 GDVAGDWPSIYQPRREESSAKEFSLRLLCAASNVGGVIGKGGGIIKQIRQESGAFIKV-D 316
Query: 88 AIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
+ ++ +I +S+K+ ++ VS NA + + D S + + T R
Sbjct: 317 SSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCSEKTDPESA--------IPSYTTR 368
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LL++ S+ GCLIG G I ++R +S A I IL+ +P A+ E + +VQISGD+ V
Sbjct: 369 LLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA--EDEEMVQISGDLDVV 426
Query: 207 LNALVEIGNQLREN 220
+AL++I +L+ N
Sbjct: 427 RHALLQITTRLKAN 440
>gi|302142130|emb|CBI19333.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 154/327 (47%), Gaps = 81/327 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS--------- 100
V+FR++ P+ + G VIGK G I +IR+ET +++ + ++ +ERV++I+
Sbjct: 45 VVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEAD 104
Query: 101 ---SKDNDNVVSDAENALQQIAALILK------------DDDSNSEASKVAAGHVAANTI 145
SK++D+ V +++Q+ L+ + D+DSN + V +
Sbjct: 105 NEQSKEDDSQVEKGISSVQKALLLVFERMAEGESETNGGDEDSNKSPTFV---------V 155
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLL+ SQ GCL+G G I+++ SGA I IL ++LPLCAS SD +VQI+G++ A
Sbjct: 156 RLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASP--SDELVQITGELDA 213
Query: 206 VLNALVEIGNQLRENPPRQVISIS---------------------PAYNYSAIRPAQPF- 243
AL I QL ENPPR +S P NYS P+
Sbjct: 214 CKQALQSISQQLLENPPRDYDIVSTNPTGSSSHLFGPPLPRSEAQPPPNYSFPAQGAPYA 273
Query: 244 --VEPTSA----------------------DYVTFEMLISESLVGGLIGRCGSNISRIRN 279
V T D +TF +L + VGG+IG+ G+ I ++N
Sbjct: 274 AGVRDTDYHSNTPQLHKFHESGMPGWMKPQDILTFRLLCHDERVGGIIGKGGTIIKNLQN 333
Query: 280 ESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
E+G IKV G + + R I GSA
Sbjct: 334 ETGCEIKVLDGVPDSEDRVIFISGSAH 360
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 46 KAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKD 103
K QD+L FR++ ++G +IGK G I+ ++ ET IK+ D + E+RVI IS S
Sbjct: 301 KPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAH 360
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D+ +S A++A+ ++ + I++ + E + +A RLL++ +Q GCL+G G
Sbjct: 361 PDDRISPAQDAVLRVQSRIVRAIPDSKEKTVIA---------RLLVSSTQIGCLLGKGGA 411
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R SGA I IL +Q+P CAS E++ VVQI+G+ AV AL++I +LR + R
Sbjct: 412 IIAEMRKLSGAHIRILGKDQIPKCAS--ENEEVVQINGEFEAVQEALLQITTRLRHHHFR 469
Query: 224 QVISISPAYNYSAIRPAQPF 243
S++ N + PF
Sbjct: 470 DAFSVNHPSNPAFTDQVPPF 489
>gi|53749469|gb|AAU90323.1| KH domain containing protein [Solanum demissum]
Length = 533
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 153/313 (48%), Gaps = 66/313 (21%)
Query: 27 GKRRREDGEIEGSD-PKRRAKA----------QDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
GKR + + + SD KRR +D +FR + P+ +IG +IG G +++
Sbjct: 9 GKRMQSESDYSRSDGSKRRTPTDEKESNSIGPEDTVFRYLCPTGKIGSIIGVGGDIAKQL 68
Query: 76 REETKATIKIADAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDD- 126
R ET + I+I++ I EERV+ I S +D +++S A++AL ++ +L +D
Sbjct: 69 RTETNSKIRISETIPGCEERVVTIYSGSEETNVSEDTGDLISPAQDALFRVHDRVLAEDL 128
Query: 127 --DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
D + E + T+R+L+ Q GC+IG GQ I+ LR+ +GA I +L+ L
Sbjct: 129 RMDEDLEDHQQI-------TVRMLVPSDQIGCVIGKGGQVIQNLRSETGAQIRVLSSEHL 181
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR---QVISISPAYNYSAIRPAQ 241
P CA SD ++QI+G+ V AL ++ +L +NP R Q++S SP S R
Sbjct: 182 PPCA--LNSDELLQITGEGAVVKKALYQVAARLHDNPSRSQHQLLS-SP----SIFRSGA 234
Query: 242 PFVEPTSAD-----------YVTFE----------------MLISESLVGGLIGRCGSNI 274
FV P + Y +++ ++ VG +IG+ G I
Sbjct: 235 GFVNPHAGTQVMGVTSLMGPYASYKSDGRSKSSSVKEFAVRLVCPTENVGAVIGKGGGII 294
Query: 275 SRIRNESGAMIKV 287
++R ESGA IKV
Sbjct: 295 KQLRQESGASIKV 307
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 19/206 (9%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
+ + ++ R++ P+ +G VIGK G I+++R+E+ A+IK+ A A ++ +I +S+K
Sbjct: 265 KSSSVKEFAVRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIFVSAK 324
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++ + DA LQ +SE ++ +G A T RLL+ S+ GCLIG
Sbjct: 325 EAFEDQSPTIDATMRLQP----------RSSEKTEKESGD-AILTTRLLVPSSRVGCLIG 373
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++RNS+ A+I +L+ LP AS E D +VQI+GD NAL+++ +LR
Sbjct: 374 KGGSIINEMRNSTRASIRVLSKENLPKVAS--EDDEMVQITGDANVATNALLQVLMRLRA 431
Query: 220 NPPR---QVISISPAYNYSAIRPAQP 242
N + SP +Y + + P
Sbjct: 432 NTFEMEGSFPAFSPGLSYVPMSASMP 457
>gi|116787223|gb|ABK24418.1| unknown [Picea sitchensis]
gi|224286491|gb|ACN40952.1| unknown [Picea sitchensis]
Length = 481
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 168/372 (45%), Gaps = 79/372 (21%)
Query: 24 DVSGKRRREDGEIEG--SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
++S KR R+D EI +D K D +FR++VP++ +G +IG++G ++K+ EET++
Sbjct: 58 NLSQKRGRDD-EIGAGLTDKKWPGWPGDNVFRLLVPTQMVGGIIGRKGEFVKKMCEETRS 116
Query: 82 TIKIADAIARHEERVIIISSKDNDNV-VSDAENALQQIAALILKDD-DSNSEASKVAAGH 139
IKI + + ER +++S+K+ VS A + + ++ I++ D E + G
Sbjct: 117 RIKILEGLRGTPERTVMVSAKEEPEAPVSPAMDGILRVHKRIIEGGPDGRGELGRAQQGG 176
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
+ RLL+AG+QAG LIG G I+ ++ SGA + +LA LP CA A DR+V++
Sbjct: 177 SGTISTRLLVAGTQAGSLIGRQGATIKAIQEGSGAIVRVLAAEDLPFCALA--DDRLVEV 234
Query: 200 SGDVPAVLNA-----------LVE------------IGNQ--LRENPPRQVIS------- 227
G+ +V A LV+ IGNQ + EN P Q
Sbjct: 235 QGEAGSVHKAVELIVSHLRKFLVDRSVLPLFEADRTIGNQPQIEENLPHQSWGHNQSSSV 294
Query: 228 -------------ISPAYNYSAIRPAQPFV--------------EPTSADY--------- 251
+S A+ + P +P+ A +
Sbjct: 295 PSSGGAGLGNTQYMSSAFQHDNYYPPSDLPLESQGHHGLSVYGRDPSLAGHSVANPPPAP 354
Query: 252 ----VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
VT M I S +IG G+NIS +R SGA I V +G ++ G+A Q
Sbjct: 355 VITQVTQHMQIPLSYADAIIGTAGANISYMRRNSGATIAVQETRGVPGEMTVEIRGTATQ 414
Query: 308 VALAKQRVDEYI 319
V A+Q + ++
Sbjct: 415 VQTAQQLIQNFM 426
>gi|359386146|gb|AEV43362.1| poly C-binding protein [Citrus sinensis]
Length = 569
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 37/200 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++RI+ PSR+IG VIGK G+ ++ +REET+A I +AD I EERVIII S
Sbjct: 46 DTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAK 105
Query: 102 ---KDNDNVVSD----------AENALQQIAALILKDD-------DSNSEASKVAAGHVA 141
KD+D+ A++AL ++ I+++D D ++E S + A
Sbjct: 106 TQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA---- 161
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
RLL+ + GCL+G G I++LR+ +GA I +L ++LP C A +D +VQISG
Sbjct: 162 ----RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPC--AMNTDEMVQISG 215
Query: 202 DVPAVLNALVEIGNQLRENP 221
AL E+ L +NP
Sbjct: 216 KPNVAKRALYEVSTLLHQNP 235
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 30 RREDGEIEGSDPKRRAK-AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R G I P + + + + +I+ + +IG VIGK G ++++++ET A+I + DA
Sbjct: 296 RMGSGSINSCPPGQMGEVSAEFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDA 355
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ERVI S+ N Q IL+ + SE S+ G + T RLL
Sbjct: 356 PTDSDERVIRASA------FEGLWNPRSQTIDAILQLQNKTSEFSE--KGTI---TTRLL 404
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+ S+ GC++G G I ++R + A I ++
Sbjct: 405 VPSSKVGCILGQGGHVINEMRRRTQADIRVVG 436
>gi|357496471|ref|XP_003618524.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493539|gb|AES74742.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 553
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 107/184 (58%), Gaps = 14/184 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D +FR + P R+IG +IG+ G ++++R ETKA I+I + + +ERV+ + S
Sbjct: 45 EDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETN 104
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
D D +VS AE+AL +I ++ +D +S+ + V A +LL+ Q GC++G
Sbjct: 105 TVDDGDKLVSPAEDALFKIHDRVVA-EDLHSDQEEEGGPQVNA---KLLVPSDQIGCVLG 160
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
GQ ++ LR+ +GA I IL + +P C A SD +VQISGD V AL +I ++L
Sbjct: 161 KGGQIVQNLRSETGAQIRILKDDHVPAC--ALRSDELVQISGDAAVVKKALHQIASRLHH 218
Query: 220 NPPR 223
NP R
Sbjct: 219 NPSR 222
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ +++ R++ P+ +G VIGK G I +IR+++ ATIK+ D+ A+ ++ +I IS+K+
Sbjct: 284 SSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKE- 341
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+ + + A L+ SE S+ +G + + T RLL++ S+ GCLIG G
Sbjct: 342 --FFEETFSPTVEAAVLLQP---RCSEKSERDSG-IISFTTRLLVSSSRIGCLIGKGGSI 395
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + + I IL+ LP AS + D +VQISGD+ +ALV++ +LR N
Sbjct: 396 ITEMRRLTKSNIRILSKENLPKIAS--DDDEMVQISGDLDVAKDALVQVLTRLRAN 449
>gi|357496469|ref|XP_003618523.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493538|gb|AES74741.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 569
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 107/184 (58%), Gaps = 14/184 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D +FR + P R+IG +IG+ G ++++R ETKA I+I + + +ERV+ + S
Sbjct: 45 EDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETN 104
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
D D +VS AE+AL +I ++ +D +S+ + V A +LL+ Q GC++G
Sbjct: 105 TVDDGDKLVSPAEDALFKIHDRVVA-EDLHSDQEEEGGPQVNA---KLLVPSDQIGCVLG 160
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
GQ ++ LR+ +GA I IL + +P C A SD +VQISGD V AL +I ++L
Sbjct: 161 KGGQIVQNLRSETGAQIRILKDDHVPAC--ALRSDELVQISGDAAVVKKALHQIASRLHH 218
Query: 220 NPPR 223
NP R
Sbjct: 219 NPSR 222
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ +++ R++ P+ +G VIGK G I +IR+++ ATIK+ D+ A+ ++ +I IS+K+
Sbjct: 284 SSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKE- 341
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+ + + A L+ SE S+ +G + + T RLL++ S+ GCLIG G
Sbjct: 342 --FFEETFSPTVEAAVLL---QPRCSEKSERDSG-IISFTTRLLVSSSRIGCLIGKGGSI 395
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + + I IL+ LP AS + D +VQISGD+ +ALV++ +LR N
Sbjct: 396 ITEMRRLTKSNIRILSKENLPKIAS--DDDEMVQISGDLDVAKDALVQVLTRLRAN 449
>gi|357501947|ref|XP_003621262.1| KH domain-containing protein [Medicago truncatula]
gi|355496277|gb|AES77480.1| KH domain-containing protein [Medicago truncatula]
Length = 571
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 17/188 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++R + P R+IG +IG+ G ++++R +TKA I+I + + +ERV+ + S
Sbjct: 48 DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107
Query: 102 -KDNDNVVSDAENALQQIAALILKDD-----DSNSEASKVAAGHVAANTIRLLIAGSQAG 155
+D+ + A +AL +I ++ +D D + + KV G + T +LL+A Q G
Sbjct: 108 FEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLV--TAKLLVASDQIG 165
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG GQ ++ +R+ +GA I IL ++LPLC A SD +VQISG++ V AL+++
Sbjct: 166 CVIGKGGQIVQNIRSETGAQIRILKDDRLPLC--ALNSDELVQISGEIAVVKKALIQVAA 223
Query: 216 QLRENPPR 223
+L +NP R
Sbjct: 224 RLHDNPSR 231
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 14/193 (7%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R + P+ IG VIGK G I +IR+++ A IK+ + ++ +I IS+++ + D
Sbjct: 299 RFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARE---LFEDPF 355
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+A + A L+ SE + +G + + T RLL++ S+ GCLIG G I ++R +
Sbjct: 356 SATIEAAVLLQP---RCSEKVERDSG-ILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLT 411
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN---PPRQVISIS 229
A I IL+ LP A+ E D +VQISG++ +AL+++ +LR N R V S+
Sbjct: 412 KANIRILSKEDLPKIAT--EDDEMVQISGELDIAKDALLQVLTRLRANLFDKERSVSSLL 469
Query: 230 PAYNYSAIRPAQP 242
P A PA P
Sbjct: 470 PP--VLAYLPASP 480
>gi|148905782|gb|ABR16055.1| unknown [Picea sitchensis]
Length = 650
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 139/262 (53%), Gaps = 48/262 (18%)
Query: 26 SGKRRREDGEI-EGSDPKRRAK-----------AQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
SGKR R + ++ E +D +R A ++RI+ PS IG VIGK G I+
Sbjct: 6 SGKRTRTEHDLAENNDRNKRRNSGTGREQTMPGADSTVYRILCPSNVIGSVIGKGGKVIK 65
Query: 74 KIREETKATIKIADAIARHEERVIIISSK--------------DNDNVVSDAENALQQIA 119
+R+ET++ I++ADA+ +ERVI+I S + + V A++ L ++
Sbjct: 66 SMRQETRSKIRVADAVPGVDERVIVIFSSPLSKDKEKDDDDDDNENEPVCPAQDGLLRVH 125
Query: 120 ALIL-----KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
++I+ KD+D++ + + A RLL+A SQ G LIG G NI+KLR+ SGA
Sbjct: 126 SVIVQESSGKDNDADKKRPQDA---------RLLVANSQIGSLIGKGGNNIQKLRSESGA 176
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---PA 231
I I ++LP CA + D +V ISGD AV AL + L ++PP++ I S P
Sbjct: 177 QIQIPRKDELPGCAFSF--DELVVISGDAAAVKKALYAVSAFLFKHPPKEQIPWSVILPE 234
Query: 232 YNYSAIRPAQ-PFVEPTSADYV 252
N S++ P+ P P A+Y+
Sbjct: 235 TNQSSLPPSGVPTFPP--ANYL 254
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 16/179 (8%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+ +++ R++ P+ +IG VIGK G+ I+ +R +T A+I++ DA +ERVI++S+ +
Sbjct: 310 KKTSEEFSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTESDERVIVVSATE 369
Query: 104 --NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+D V E A L+L+ S + A + R L+ GCL+G
Sbjct: 370 LADDRVSPTIE------AVLLLQGKTSGTTDKD------GAISTRFLVPSKHIGCLLGKG 417
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R + A I I ++ P+C S E++ +VQ++G+ +AL++I +LREN
Sbjct: 418 GNIISEMRKQTRANIRIFRKDERPICVS--ENEELVQVTGEPGVAKDALIQILKRLREN 474
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 79/298 (26%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV---- 108
R +VPS+ IG ++GK G+ I ++R++T+A I+I R +ER I +S +N+ +V
Sbjct: 402 RFLVPSKHIGCLLGKGGNIISEMRKQTRANIRIF----RKDERPICVS--ENEELVQVTG 455
Query: 109 --SDAENALQQIAAL----ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
A++AL QI I KD D A+NT +L S
Sbjct: 456 EPGVAKDALIQILKRLRENIFKDKDG------------ASNTDSVLPLSS---------- 493
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCAS--AHESDRVV---QISGDVPAVLNAL--VEIGN 215
+ P+ +PL +S + D V I+G A L+ ++ G
Sbjct: 494 ---------------LSVPSAVPLSSSYGTRKYDIVSPRGAIAGRSAAGLSGFGALQAGT 538
Query: 216 ----QLRENPPRQV--ISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGR 269
L+ P + I +S + S++ P+ F P SA V ++GR
Sbjct: 539 GSYASLQPYAPTRTFGIGLSGGHLNSSLAPSHEFAIPNSA-------------VSSVLGR 585
Query: 270 CGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
GSNIS IR SGA +K+ R ++ G+ +Q A+ + ++ + QQ+
Sbjct: 586 GGSNISHIREISGATVKLRDPITGASDRVVEISGTPEQSHAAQSLIQAFMLTGQSQQS 643
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+L++ S +G LIG+ G+NI ++R+ESGA I++
Sbjct: 149 LLVANSQIGSLIGKGGNNIQKLRSESGAQIQI 180
>gi|148909250|gb|ABR17725.1| unknown [Picea sitchensis]
Length = 435
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 139/262 (53%), Gaps = 48/262 (18%)
Query: 26 SGKRRREDGEI-EGSDPKRRAK-----------AQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
SGKR R + ++ E +D +R A ++RI+ PS IG VIGK G I+
Sbjct: 6 SGKRTRTEHDLAENNDRNKRRNSGTGREQTMPGADSTVYRILCPSNVIGSVIGKGGKVIK 65
Query: 74 KIREETKATIKIADAIARHEERVIIISSK--------------DNDNVVSDAENALQQIA 119
+R+ET++ I++ADA+ +ERVI+I S + + V A++ L ++
Sbjct: 66 SMRQETRSKIRVADAVPGVDERVIVIFSSPLSKDKEKDDDDDDNENEPVCPAQDGLLRVH 125
Query: 120 ALIL-----KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
++I+ KD+D++ + + A RLL+A SQ G LIG G NI+KLR+ SGA
Sbjct: 126 SVIVQESSGKDNDADKKRPQDA---------RLLVANSQIGSLIGKGGNNIQKLRSESGA 176
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---PA 231
I I ++LP CA + D +V ISGD AV AL + L ++PP++ I S P
Sbjct: 177 QIQIPRKDELPGCAFSF--DELVVISGDAAAVKKALYAVSAFLFKHPPKEQIPWSVILPE 234
Query: 232 YNYSAIRPAQ-PFVEPTSADYV 252
N S++ P+ P P A+Y+
Sbjct: 235 TNQSSLPPSGVPTFPP--ANYL 254
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 14/131 (10%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+ +++ R++ P+ +IG VIGK G+ I+ +R +T A+I++ DA +ERVI++S+ +
Sbjct: 310 KKTSEEFSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTESDERVIVVSATE 369
Query: 104 --NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+D V E A L+L+ S + A + R L+ GCL+G
Sbjct: 370 LADDRVSPTIE------AVLLLQGKTSGTTDKD------GAISTRFLVPSKHIGCLLGKG 417
Query: 162 GQNIEKLRNSS 172
G I ++R +S
Sbjct: 418 GNIISEMRANS 428
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+L++ S +G LIG+ G+NI ++R+ESGA I++
Sbjct: 149 LLVANSQIGSLIGKGGNNIQKLRSESGAQIQI 180
>gi|113205451|gb|AAW28569.2| KH domain containing protein, putative [Solanum demissum]
Length = 600
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 152/313 (48%), Gaps = 66/313 (21%)
Query: 27 GKRRREDGEIEGSD-PKRRAKA----------QDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
GKR + + + SD KRR +D +FR + P+ +IG +IG G +++
Sbjct: 9 GKRMQSESDYSRSDGSKRRTPTDEKESNSIGPEDTVFRYLCPTGKIGSIIGVGGDIAKQL 68
Query: 76 REETKATIKIADAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDD- 126
R ET + I+I++ I EERV+ I S +D +++S A++AL ++ +L +D
Sbjct: 69 RTETNSKIRISETIPGCEERVVTIYSGSEETNVSEDTGDLISPAQDALFRVHDRVLAEDL 128
Query: 127 --DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
D + E + T+R+L+ Q GC+IG GQ I+ LR+ +GA I +L+ L
Sbjct: 129 RMDEDLEDHQQI-------TVRMLVPSDQIGCVIGKGGQVIQNLRSETGAQIRVLSSEHL 181
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR---QVISISPAYNYSAIRPAQ 241
P CA SD ++QI+G+ V AL ++ +L +NP R Q++S SP S R
Sbjct: 182 PPCA--LNSDELLQITGEGAVVKKALYQVAARLHDNPSRSQHQLLS-SP----SIFRSGA 234
Query: 242 PFVEPTSAD-----------YVTFE----------------MLISESLVGGLIGRCGSNI 274
V P + Y +++ ++ VG +IG+ G I
Sbjct: 235 GLVNPHAGTQVMGVTSLMGPYASYKSDGRSRSSSVKEFAVRLVCPTENVGAVIGKGGGII 294
Query: 275 SRIRNESGAMIKV 287
++R ESGA IKV
Sbjct: 295 KQLRQESGASIKV 307
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 19/206 (9%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
R + ++ R++ P+ +G VIGK G I+++R+E+ A+IK+ A A ++ +I +S+K
Sbjct: 265 RSSSVKEFAVRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIFVSAK 324
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
++ + DA LQ +SE ++ +G A T RLL+ S+ GCLIG
Sbjct: 325 EAFEDQSPTIDATMRLQP----------RSSEKTEKESGD-AILTTRLLVPSSRVGCLIG 373
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++RNS+ A+I +L+ LP AS E D +VQI+GD NAL+++ +LR
Sbjct: 374 KGGSIINEMRNSTRASIRVLSKENLPKVAS--EDDEMVQITGDANVAANALLQVLMRLRA 431
Query: 220 NPPRQ---VISISPAYNYSAIRPAQP 242
N + SP +Y + + P
Sbjct: 432 NTFEMEGSFPAFSPGLSYVPMSASMP 457
>gi|308804768|ref|XP_003079696.1| putative KH domain containing protein (ISS) [Ostreococcus tauri]
gi|116058152|emb|CAL53341.1| putative KH domain containing protein (ISS), partial [Ostreococcus
tauri]
Length = 709
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 152/325 (46%), Gaps = 66/325 (20%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
+++FR++ P + G VIG+ G IQ+IR ET A +K+ + I EER+I +SS D+
Sbjct: 342 EIMFRLLCPVSKTGSVIGRNGEVIQQIRSETGAKVKVCEQINNAEERIICVSSNDDGLAP 401
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL ++ I+ D S S+ RLL+ SQ GCLIG G I +
Sbjct: 402 MLAAQVALFRVYRCIV--DSSGSDVPL---------PFRLLVQTSQIGCLIGKGGSIIRQ 450
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL--VEIGNQLREN----- 220
+RN +GAT+ +L + LP CA+A D +++I G PA AL + +LR N
Sbjct: 451 IRNETGATVRVLPSDALPACANAD--DELLEI-GQWPADACALGIRIVSGRLRGNMRHKA 507
Query: 221 ---------------PPRQVISISPA--------YNYSA------------IRPAQPFVE 245
P + +P Y +A + + P VE
Sbjct: 508 AERLNVESNVYSASMTPTMAVQDTPTLQQSELMMYGMTAYETEPVDTALASLSLSAPPVE 567
Query: 246 -PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG--------KGEQKH 296
P + M IS +G ++GR G NIS R SGA IK+Y G + +
Sbjct: 568 IPGVTTVNSVHMTISSQHIGSVLGRGGCNISIARQVSGARIKLYPGASGRNGARRAQDSE 627
Query: 297 RHIQFGGSAQQVALAKQRVDEYIYS 321
R ++ G+++QV+ A+ ++ +I S
Sbjct: 628 RLLEISGTSEQVSSAQTIIERFIAS 652
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 135/311 (43%), Gaps = 75/311 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD------ 103
V FR++ P +IG+VIGKEG I+ +R ET A +K+A +ERV++++S +
Sbjct: 70 VQFRLLCPVARIGRVIGKEGRVIKALRAETGARVKVAPTTRGADERVVLVASGEELMMDD 129
Query: 104 ---NDNVVSDAENALQQI---------AALILKDDDSNSEA------SKVAAGHVAAN-- 143
+D V+ AE AL +I AL D ++SE+ S G + N
Sbjct: 130 GDGSDVPVTTAERALFRIFDTVASESGGALDGTRDGTSSESGSGVPESSSTGGERSMNGG 189
Query: 144 ----TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
RLL+ +Q G LIG G I +R SSGAT+ ++ LP CAS D ++QI
Sbjct: 190 RAVPICRLLVPRAQVGSLIGKGGAVISAIRASSGATVRLMPATMLPTCAS--RGDELLQI 247
Query: 200 SGDV------------PAVLNALVEIGNQLRENPPRQVIS---ISPAYNYS-AIRPAQPF 243
+ V +V +AL + LRE P + S SP + I+P
Sbjct: 248 TAPVRDTDGNDVDLALASVKSALRMVAKNLREYPTKMATSESFRSPLEAFMLGIKPGANA 307
Query: 244 ---------------------------VEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
V + F +L S G +IGR G I +
Sbjct: 308 DGDGGNGAGIAGGSSGGHMSTRMNLNGVYVPGGTEIMFRLLCPVSKTGSVIGRNGEVIQQ 367
Query: 277 IRNESGAMIKV 287
IR+E+GA +KV
Sbjct: 368 IRSETGAKVKV 378
>gi|302754958|ref|XP_002960903.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
gi|300171842|gb|EFJ38442.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
Length = 502
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 139/298 (46%), Gaps = 51/298 (17%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R+R G E + DV++RI+ P +IG VIGK G I+ +R ET A IK+AD
Sbjct: 25 RQRRRGGFERTPEAAAPPVDDVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADG 84
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE------ASKVAAGHVAA 142
I +ERVI IS ++ E + + + KD + N E AS+ A V A
Sbjct: 85 IPGSDERVIFISPRERR------EGKPRGGSKEMDKDKEQNGEESTPLPASQEALFKVFA 138
Query: 143 N-----------------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
T RLL+ +Q GCL+G +G+ IE++R SGA I +L QLP
Sbjct: 139 RIVEGEEFDEDEDSSRNVTARLLVPSNQIGCLLGKAGKIIEQMRVESGAQIRVLPREQLP 198
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR----QVISISPAYNYSAIRPAQ 241
C A+ +D + ++G++ V AL I +L +NPPR Q + P + S I P
Sbjct: 199 KC--AYHTDEL--LTGELALVKKALTTISTRLYDNPPRDKPPQAGHLGP-FQESTILPGT 253
Query: 242 PF------------VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ P ++ +L +G +IG+ G I IR E+ A IK+
Sbjct: 254 LLPPGAFFPQGNASIAPVEGEFAV-RLLCPNEKIGSVIGKGGMIIRSIREETCARIKI 310
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 11/168 (6%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++ P+ +IG VIGK G I+ IREET A IKIADA+A EERVI I+S N+ +
Sbjct: 278 RLLCPNEKIGSVIGKGGMIIRSIREETCARIKIADAVANAEERVIHITS--NEVLHEQVS 335
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
AL+ + L + D ++E A T R L+ + GCL+G G I +R ++
Sbjct: 336 PALEAVLQLQSRISDPSAEKD-------GAMTTRFLVPSANIGCLLGKKGSIIADMRRNT 388
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
A I +L+ LP C AHE D +VQ+ GD+ +A++EI +LR N
Sbjct: 389 RANIRVLSKEALPKC--AHEDDELVQVVGDITVARDAVIEIITRLRAN 434
>gi|357112153|ref|XP_003557874.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 538
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 152/304 (50%), Gaps = 54/304 (17%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + SR+IG +IG+ G +++R +T+A I+I
Sbjct: 23 GKRRNPGDDTYAPCP------DDTVYRYLCASRKIGSIIGRGGEIAKQLRTDTQAKIRIG 76
Query: 87 DAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
+++ +ERVI I S +D ++ V A++AL ++ ++ DD E ++
Sbjct: 77 ESVPGCDERVITIFSSSRETNTVEDTEDKVCPAQDALFRVHEKLITDDGPGDEENEEGLA 136
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V +RLL+ Q GC+IG G I+ +R+ +G+ I +L+ LP CA + D ++Q
Sbjct: 137 QV---IVRLLVPSDQIGCIIGKGGHIIQGIRSDTGSHIRVLSTEHLPACAIS--GDELLQ 191
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQ-------------------------VISISPAYN 233
ISGD V AL+++ ++L +NP R V+ I+P N
Sbjct: 192 ISGDPLVVRKALLQVSSRLHDNPSRSQHLLASSLTQPYPVGSRHGSSSTTPVVGIAPMVN 251
Query: 234 -YSAIR-------PA--QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
Y + P+ QP E +SA + +L + S VGG+IG+ G I +IR ESGA
Sbjct: 252 PYGGYKGDMVGDWPSIYQPRREESSAKEFSLRLLCAASDVGGVIGKGGGIIKQIRQESGA 311
Query: 284 MIKV 287
IKV
Sbjct: 312 FIKV 315
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 102/181 (56%), Gaps = 11/181 (6%)
Query: 41 PKRR-AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
P+R + A++ R++ + +G VIGK G I++IR+E+ A IK+ D+ + ++ +I +
Sbjct: 270 PRREESSAKEFSLRLLCAASDVGGVIGKGGGIIKQIRQESGAFIKV-DSSSAEDDCIITV 328
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
S+K+ E+ + ++ SE + +G + T RLL++ S+ GCLIG
Sbjct: 329 SAKEF------FEDPISPTIDATVRLQPRCSEKTDPESGE-PSYTTRLLVSTSRIGCLIG 381
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++R +S A I IL+ +P AS E + +VQISGD+ +ALV+I +L+
Sbjct: 382 KGGSIITEIRRTSRANIRILSKENVPKVAS--EDEEMVQISGDLDVAKHALVQITTRLKA 439
Query: 220 N 220
N
Sbjct: 440 N 440
>gi|225443339|ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|297735779|emb|CBI18466.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 153/320 (47%), Gaps = 85/320 (26%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII----- 99
AK Q VLFRI+ P+ + G VIGK G I++ RE+T A I+I D++ +ERVI+I
Sbjct: 52 AKPQ-VLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVADAV 110
Query: 100 -------------------------SSKD----NDNVVSDAENALQQIAALILK-DDDSN 129
SS + +D+ S A+ AL ++ ILK D++
Sbjct: 111 KSKREASAICGAEANDGEESANLSNSSPNPVAVDDDESSPAQQALVRVFERILKVDEERE 170
Query: 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
+ K G+VA RLL +Q GC++G G+ +EK+R SGA I +L + +P CAS
Sbjct: 171 EKEKKEDLGNVAV-CCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACAS 229
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENP----------------------PRQVIS 227
D ++QI+G PAV AL+ + + L++NP P Q+ S
Sbjct: 230 --PGDELIQITGTFPAVRKALLLVSSCLQDNPRADATNSAAAKPTGGMLHGNGMPGQLDS 287
Query: 228 I----------SPAYN---YSAIRPAQPFVEPTSADY-------VTFEMLISESLVGGLI 267
P Y+ YS++ P E A++ V F++L VG LI
Sbjct: 288 FPQRGYGSSLHGPDYHSRGYSSM----PGPENIGANHRMVLEEEVVFKLLCHFEKVGSLI 343
Query: 268 GRCGSNISRIRNESGAMIKV 287
G+ GS I +++E+GA IK+
Sbjct: 344 GKGGSIIRFLQSETGASIKI 363
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++V+F+++ ++G +IGK G I+ ++ ET A+IKIADA +ERV++IS+++N +
Sbjct: 326 EEVVFKLLCHFEKVGSLIGKGGSIIRFLQSETGASIKIADAAPDSDERVVVISARENLEQ 385
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A++A+ ++ I +++ AA RLL+ Q GCL+G G I
Sbjct: 386 KHSPAQDAVIRVHCRI----------AEIGFEPGAAVVARLLVHSQQIGCLLGKGGIIIS 435
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++R ++GA+I I A Q+P C S ++D +VQ+ G + +V +AL I +++RE
Sbjct: 436 EMRRATGASIRIFAKEQVPKCGS--QNDELVQVIGSLQSVQDALFRITSRIRET 487
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 127/327 (38%), Gaps = 82/327 (25%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-------------------IADAIA 90
V R++ PS Q+G V+G+ G ++KIR+E+ A I+ I
Sbjct: 183 VCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACASPGDELIQITGTFP 242
Query: 91 RHEERVIIISSKDNDNVVSDAEN--ALQQIAALI--------------------LKDDDS 128
+ ++++SS DN +DA N A + ++ L D
Sbjct: 243 AVRKALLLVSSCLQDNPRADATNSAAAKPTGGMLHGNGMPGQLDSFPQRGYGSSLHGPDY 302
Query: 129 NSEASKVAAG--HVAAN---------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
+S G ++ AN +LL + G LIG G I L++ +GA+I
Sbjct: 303 HSRGYSSMPGPENIGANHRMVLEEEVVFKLLCHFEKVGSLIGKGGSIIRFLQSETGASIK 362
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAI 237
I A+ +RVV IS REN ++ A
Sbjct: 363 IAD-------AAPDSDERVVVISA----------------RENLEQKHSPAQDAVIRVHC 399
Query: 238 RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-----G 292
R A+ EP +A V +L+ +G L+G+ G IS +R +GA I+++ + G
Sbjct: 400 RIAEIGFEPGAA--VVARLLVHSQQIGCLLGKGGIIISEMRRATGASIRIFAKEQVPKCG 457
Query: 293 EQKHRHIQFGGSAQQVALAKQRVDEYI 319
Q +Q GS Q V A R+ I
Sbjct: 458 SQNDELVQVIGSLQSVQDALFRITSRI 484
>gi|357112139|ref|XP_003557867.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 542
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 153/304 (50%), Gaps = 54/304 (17%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + SR+IG +IG+ G +++R +T+A I+I
Sbjct: 23 GKRRNPGDDTYAPGP------DDTVYRYLCTSRKIGSIIGRGGEIAKQLRTDTQAKIRIG 76
Query: 87 DAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
+++ +ERVI I S +D ++ V A++AL ++ ++ DD E ++
Sbjct: 77 ESVPGCDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLIADDGPGDEENEEGLA 136
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC+IG G I+ +R+ +G+ I +L+ +LP C + D ++Q
Sbjct: 137 QV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGSQIRVLSNERLPACGIS--GDELLQ 191
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQ-------------------------VISISPAYN 233
ISGD V AL+++ ++L +NP R V+ I+P +
Sbjct: 192 ISGDPLVVRKALLQVSSRLHDNPSRSQHLQAPSLMQPYPVGSRNGSSSTAPVVGIAPMVS 251
Query: 234 -YSAIR-------PA--QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
Y + P+ QP E +SA + +L + S VGG+IG+ G I +IR ESGA
Sbjct: 252 PYGGYKGDMVGDWPSIYQPRREDSSAKDFSLRLLCAASDVGGVIGKGGGIIKQIRQESGA 311
Query: 284 MIKV 287
IKV
Sbjct: 312 FIKV 315
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 101/183 (55%), Gaps = 15/183 (8%)
Query: 41 PKRR-AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
P+R + A+D R++ + +G VIGK G I++IR+E+ A IK+ D+ + ++ +I +
Sbjct: 270 PRREDSSAKDFSLRLLCAASDVGGVIGKGGGIIKQIRQESGAFIKV-DSSSAEDDCIITV 328
Query: 100 SSKD--NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
S+K+ D V + ++ K D + E S T RLL++ SQ GCL
Sbjct: 329 SAKEFFEDPVSPTIDATVRLQPKCSEKTDPESGEPSY---------TTRLLVSTSQIGCL 379
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I ++R +S A I IL+ +P AS E + +VQISGD+ +ALV+I +L
Sbjct: 380 IGKGGSIITEIRRTSRANIRILSKENVPKVAS--EDEEMVQISGDLEVARHALVQITTRL 437
Query: 218 REN 220
+ N
Sbjct: 438 KAN 440
>gi|413955311|gb|AFW87960.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
gi|413955312|gb|AFW87961.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 543
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 19/205 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + SR+IG +IG+ G +++R ET+A I+I
Sbjct: 21 GKRRNPGDDTYAPGP------DDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIG 74
Query: 87 DAIARHEERVI-IISSKDNDNVVSDAE-------NALQQIAALILKDDDSNSEASKVAAG 138
+++ EERVI I SS N + DAE +AL ++ + D+ +E S+ +
Sbjct: 75 ESVPGCEERVITIFSSSRRTNTIDDAEDKVCPAQDALFRVHERLATDESFGNEDSEEISP 134
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC++G G I+ +R+ +GA I +L+ + +P CA + D ++Q
Sbjct: 135 QV---TVRLLVPSDQIGCILGKGGHIIQGIRSETGAQIRVLSKDHIPACAIS--GDELLQ 189
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR 223
ISGD+ V AL ++ ++L NP +
Sbjct: 190 ISGDMVVVKKALCQVSSRLHNNPSK 214
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 74 KIREETKATIKIADAIARHEERVII-ISSKD--NDNVVSDAENALQQIAALILKDDDSNS 130
+IR+E+ A IK+A + + ++ II +S+K+ D V + A++ K D +
Sbjct: 302 QIRQESGALIKVASSNSDPDDDCIITVSAKEFFEDPVSPTIDAAVRLQLRCSEKSDSELA 361
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E S T RLL++ S+ GCLIG G I ++R +S A I IL+ +P A+
Sbjct: 362 EQSY---------TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA- 411
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
E + +VQISG + +ALV+I +L+ N
Sbjct: 412 -EDEEMVQISGGLDVARHALVQIATRLKAN 440
>gi|302803919|ref|XP_002983712.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
gi|300148549|gb|EFJ15208.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
Length = 668
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 16/188 (8%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++++FRI+ PS +IG +IGK IQ ++EET A I + DA+ EERVII+S+ ++ D+
Sbjct: 345 EELVFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDAVPGCEERVIIVSAVESPDD 401
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+S A+ A+ I L+DD + V RLL+ + GCL+G G I
Sbjct: 402 DLSPAQEAVFHIQDK-LRDDGGETSERVVT---------RLLVPSNHVGCLLGKGGNIIS 451
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++RNS+ A I +L QLPLC A ++D VVQ+ G++ +ALV+I ++LR N R+
Sbjct: 452 EMRNSTRAIIRVLDREQLPLC--ALDNDEVVQVLGEIRVARDALVQITSRLRANLYREKT 509
Query: 227 SISPAYNY 234
S Y Y
Sbjct: 510 DRSDDYGY 517
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 38/208 (18%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND------ 105
FRI+ P+ +IG VIGK G I+ +R++T A IKIADAI +ERVIII + D +
Sbjct: 62 FRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDED 121
Query: 106 ---------------------------NVVSDAENALQQIAALILKDD---DSNSEASKV 135
+V A+ AL ++ + IL D D ++ V
Sbjct: 122 YPAGSGGGSAAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLDDSDSV 181
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
R+L+ +Q GCL+G G+ IE++R +G+ I IL QLP+C A +D
Sbjct: 182 EEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRILPREQLPVC--ALPTDE 239
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPR 223
VVQ+ GD P+V AL I +L +NPP+
Sbjct: 240 VVQVVGDRPSVKRALNAISTRLLDNPPK 267
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
+++ SD ++ V+ R++VP Q+G ++GK+G I+++REET + I+I + R +
Sbjct: 174 DLDDSDSVEEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRI---LPREQL 230
Query: 95 RVIIISSKDNDNVVSD---AENALQQIAALILKD 125
V + + + VV D + AL I+ +L +
Sbjct: 231 PVCALPTDEVVQVVGDRPSVKRALNAISTRLLDN 264
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 109/287 (37%), Gaps = 66/287 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V+ R++VPS +G ++GK G+ I ++R T+A I++ D R + + + + DND VV
Sbjct: 428 VVTRLLVPSNHVGCLLGKGGNIISEMRNSTRAIIRVLD---REQ---LPLCALDNDEVVQ 481
Query: 110 ------DAENALQQIAALIL---------KDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
A +AL QI + + + DD + S + L A
Sbjct: 482 VLGEIRVARDALVQITSRLRANLYREKTDRSDDYGYQRSTSPLSNFG------LQASQPP 535
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G S + + GA N LP S +R ++GD A+ L +
Sbjct: 536 GIQAPRSPPSWLLQQTERGAY------NGLPRLTSYAGIERSYGLAGDRSALPTGLTNLS 589
Query: 215 NQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
V T D + E+ S ++G+ G N+
Sbjct: 590 ----------------------------VVTSTKIDVLIPEVTFS-----AVLGQNGDNL 616
Query: 275 SRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
++I SGA + + G R I+ G+ Q +AK V+ + S
Sbjct: 617 TQISKMSGAKVTLADGCTATGDRLIEISGTPDQTNIAKTVVEAFAAS 663
>gi|302814720|ref|XP_002989043.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
gi|300143144|gb|EFJ09837.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
Length = 630
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 107/209 (51%), Gaps = 38/209 (18%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND----- 105
LFRI+ P+ +IG VIGK G I+ +R++T A IKIADAI +ERVIII + D +
Sbjct: 1 LFRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDE 60
Query: 106 ----------------------------NVVSDAENALQQIAALILKDD---DSNSEASK 134
+V A+ AL ++ + IL D D ++
Sbjct: 61 DYPAGSGGGAPAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLDDSDS 120
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
V R+L+ +Q GCL+G G+ IE++R +G+ I IL QLP+C A +D
Sbjct: 121 VEEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRILPREQLPVC--ALPTD 178
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPR 223
VVQ+ GD P+V AL I +L +NPP+
Sbjct: 179 EVVQVVGDRPSVKRALNAISTRLLDNPPK 207
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 16/188 (8%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++++FRI+ PS +IG +IGK IQ ++EET A I + DA+ EERVII+S+ ++ D+
Sbjct: 285 EELVFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDAVPGCEERVIIVSAVESPDD 341
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+S A+ A+ I L+DD + V RLL+ + GCL+G G I
Sbjct: 342 DLSPAQEAVFHIQDK-LRDDGGETSERVVT---------RLLVPSNHVGCLLGKGGNIIS 391
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++RNS+ A I +L QLPLC A ++D VVQ+ G++ +ALV+I ++LR N R+
Sbjct: 392 EMRNSTRAIIRVLDREQLPLC--ALDNDEVVQVLGEIRVARDALVQITSRLRANLYREKT 449
Query: 227 SISPAYNY 234
S Y Y
Sbjct: 450 DRSDDYGY 457
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
+++ SD ++ V+ R++VP Q+G ++GK+G I+++REET + I+I + R +
Sbjct: 114 DLDDSDSVEEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRI---LPREQL 170
Query: 95 RVIIISSKDNDNVVSD---AENALQQIAALILKD 125
V + + + VV D + AL I+ +L +
Sbjct: 171 PVCALPTDEVVQVVGDRPSVKRALNAISTRLLDN 204
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
++ V+ R++VPS +G ++GK G+ I ++R T+A I++ D R + + + + DND
Sbjct: 365 SERVVTRLLVPSNHVGCLLGKGGNIISEMRNSTRAIIRVLD---REQ---LPLCALDNDE 418
Query: 107 VV 108
VV
Sbjct: 419 VV 420
>gi|413955310|gb|AFW87959.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 528
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 113/205 (55%), Gaps = 19/205 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + SR+IG +IG+ G +++R ET+A I+I
Sbjct: 21 GKRRNPGDDTYAPGP------DDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIG 74
Query: 87 DAIARHEERVI-IISSKDNDNVVSDAE-------NALQQIAALILKDDDSNSEASKVAAG 138
+++ EERVI I SS N + DAE +AL ++ + D+ +E S+ +
Sbjct: 75 ESVPGCEERVITIFSSSRRTNTIDDAEDKVCPAQDALFRVHERLATDESFGNEDSEEISP 134
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC++G G I+ +R+ +GA I +L+ + +P CA + D ++Q
Sbjct: 135 QV---TVRLLVPSDQIGCILGKGGHIIQGIRSETGAQIRVLSKDHIPACAIS--GDELLQ 189
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR 223
ISGD+ V AL ++ ++L NP +
Sbjct: 190 ISGDMVVVKKALCQVSSRLHNNPSK 214
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 74 KIREETKATIKIADAIARHEERVII-ISSKD--NDNVVSDAENALQQIAALILKDDDSNS 130
+IR+E+ A IK+A + + ++ II +S+K+ D V + A++ K D +
Sbjct: 302 QIRQESGALIKVASSNSDPDDDCIITVSAKEFFEDPVSPTIDAAVRLQLRCSEKSDSELA 361
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E S T RLL++ S+ GCLIG G I ++R +S A I IL+ +P A+
Sbjct: 362 EQSY---------TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA- 411
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
E + +VQISG + +ALV+I +L+ N
Sbjct: 412 -EDEEMVQISGGLDVARHALVQIATRLKAN 440
>gi|359473301|ref|XP_002272287.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 517
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 138/259 (53%), Gaps = 29/259 (11%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D ++R + P R+IG +IG+ G +++R ETK+ I+I + + EERV+ I S
Sbjct: 41 EDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETN 100
Query: 103 ---DNDNVVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
D +VS A++AL +I A L D+ EA +V T+R+L+ Q G
Sbjct: 101 PFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEAQQV--------TVRMLVPSDQIG 152
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG GQ I+ +R+ + A I IL LP CA + SD ++QI GD V AL ++ +
Sbjct: 153 CVIGKGGQVIQNIRSETRAQIRILKDEHLPPCALS--SDELLQIIGDASVVRKALHQLAS 210
Query: 216 QLRENPPRQ---VISISPAYNYSAIRPAQPFV----EPTSADYVTFEMLISESLVGGLIG 268
+L ENP R ++S SP S + + + +SA + ++ +GG+IG
Sbjct: 211 RLHENPSRSQHLLLSSSPNMYQSGGDWSHSYYSARRDESSAKEFSLRLVCPTGNIGGVIG 270
Query: 269 RCGSNISRIRNESGAMIKV 287
+ G I +IR ESGA IKV
Sbjct: 271 KGGGIIKQIRQESGASIKV 289
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ A++ R++ P+ IG VIGK G I++IR+E+ A+IK+ + A ++ +I IS+K+
Sbjct: 249 SSAKEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEF 308
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
E+ I A + + +A + ++ V T RLL+ S+ GCLIG G
Sbjct: 309 ------FEDPSPTIDAALRLQPRCSEKAERESSDSVV--TTRLLVPSSRIGCLIGKGGAI 360
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R+ + A I IL+ LP AS E D +VQI+G++ NAL+++ +L+ N
Sbjct: 361 ISEMRSVTRANIRILSKENLPKVAS--EDDEMVQITGELNVASNALLQVTLRLKAN 414
>gi|296086352|emb|CBI31941.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 138/259 (53%), Gaps = 29/259 (11%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D ++R + P R+IG +IG+ G +++R ETK+ I+I + + EERV+ I S
Sbjct: 107 EDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETN 166
Query: 103 ---DNDNVVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
D +VS A++AL +I A L D+ EA +V T+R+L+ Q G
Sbjct: 167 PFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEAQQV--------TVRMLVPSDQIG 218
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG GQ I+ +R+ + A I IL LP CA + SD ++QI GD V AL ++ +
Sbjct: 219 CVIGKGGQVIQNIRSETRAQIRILKDEHLPPCALS--SDELLQIIGDASVVRKALHQLAS 276
Query: 216 QLRENPPRQ---VISISPAYNYSAIRPAQPFV----EPTSADYVTFEMLISESLVGGLIG 268
+L ENP R ++S SP S + + + +SA + ++ +GG+IG
Sbjct: 277 RLHENPSRSQHLLLSSSPNMYQSGGDWSHSYYSARRDESSAKEFSLRLVCPTGNIGGVIG 336
Query: 269 RCGSNISRIRNESGAMIKV 287
+ G I +IR ESGA IKV
Sbjct: 337 KGGGIIKQIRQESGASIKV 355
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ A++ R++ P+ IG VIGK G I++IR+E+ A+IK+ + A ++ +I IS+K+
Sbjct: 315 SSAKEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEF 374
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
E+ I A + + +A + ++ V T RLL+ S+ GCLIG G
Sbjct: 375 ------FEDPSPTIDAALRLQPRCSEKAERESSDSVV--TTRLLVPSSRIGCLIGKGGAI 426
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R+ + A I IL+ LP AS E D +VQI+G++ NAL+++ +L+ N
Sbjct: 427 ISEMRSVTRANIRILSKENLPKVAS--EDDEMVQITGELNVASNALLQVTLRLKAN 480
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 24/115 (20%)
Query: 10 NPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEG 69
+PT+ +PR E E E SD V R++VPS +IG +IGK G
Sbjct: 379 SPTIDAALRLQPRCS-------EKAERESSD-------SVVTTRLLVPSSRIGCLIGKGG 424
Query: 70 HRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-----VSDAENALQQIA 119
I ++R T+A I+I +E + ++S+D++ V ++ A NAL Q+
Sbjct: 425 AIISEMRSVTRANIRILS-----KENLPKVASEDDEMVQITGELNVASNALLQVT 474
>gi|145347410|ref|XP_001418160.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578389|gb|ABO96453.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 651
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 155/356 (43%), Gaps = 62/356 (17%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
RR GE GS+ + R + V +R++ P+ +IG+VIGKEG I+ R ET A +K+A
Sbjct: 41 RRHRGE-HGSNGEFRDAS--VRYRLLCPTTRIGRVIGKEGRVIKATRAETGARVKVAPTT 97
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV--------- 140
+ERVI+++S D+ V D E AL D E AA
Sbjct: 98 RGADERVILVASGDDLTVGEDGEGMTTAEVALFRIFDTITGEEGVTAARGGEGEGEGEAS 157
Query: 141 -----AANT--IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
A+T RLL+ Q G LIG G I +R SSGAT+ ++ N LP CAS +
Sbjct: 158 GGSTRGASTPICRLLVPRVQVGSLIGKGGTVISAIRASSGATVRVMPANMLPACAS--QG 215
Query: 194 DRVVQISG--------------DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIR- 238
D ++QI+ + +V NAL I LRE P + + S + A
Sbjct: 216 DELLQITAPSRDADGAERDQKLSMASVKNALRMIAKHLREYPSKNAATESNRSPFEAFMI 275
Query: 239 -----PAQPFVEPTSAD-------------YV------TFEMLISESLVGGLIGRCGSNI 274
P P + + YV TF +L S G +IGR G I
Sbjct: 276 GNKTAPHAGVESPGAKNGGHMSTRMNLNGVYVPGGTEITFRLLCPVSKTGSVIGRNGEVI 335
Query: 275 SRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVA--LAKQRVDEYIYSQLIQQAG 328
+IR+++GA +KV + R I S +A LA Q +Y +++ AG
Sbjct: 336 QQIRSQTGAKVKVCEQVNGAEERIICVSSSDDGLAPMLAAQVALFRVYRCIVESAG 391
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 149/323 (46%), Gaps = 61/323 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
++ FR++ P + G VIG+ G IQ+IR +T A +K+ + + EER+I +SS D+
Sbjct: 312 EITFRLLCPVSKTGSVIGRNGEVIQQIRSQTGAKVKVCEQVNGAEERIICVSSSDDGLAP 371
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL ++ I++ +AG+ RLL+ SQ GCLIG G I++
Sbjct: 372 MLAAQVALFRVYRCIVE-----------SAGNEIPLPFRLLVQTSQIGCLIGKGGSIIKQ 420
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE--IGNQLRENPPRQV 225
+RN +GAT+ +L LP CA+ E + Q D A+ +V + +R ++
Sbjct: 421 IRNETGATVRVLPSEALPSCANDDELLEIGQWPADACALGIRIVSGRLRGNIRHKAAERL 480
Query: 226 ISISPAYN-----------------YSAIRPA-------------------QPFVE--PT 247
S + A N Y + A P VE P
Sbjct: 481 TSTADAQNTQTMGFDATWQQAELIPYGMTQTAYGSPETVMMSKTKSTGGARAPPVEIAPG 540
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY-GGKGEQK--------HRH 298
+ + +M IS +G ++GR G NIS R SGA IK+Y G G ++ R
Sbjct: 541 VSVVNSVQMAISSQHIGSVLGRGGCNISLARQVSGARIKLYPGAAGSRRTADRSVDSDRL 600
Query: 299 IQFGGSAQQVALAKQRVDEYIYS 321
++ GS++QVA A+ + +I S
Sbjct: 601 LEISGSSEQVASAQDIIQRFIAS 623
>gi|224067136|ref|XP_002302373.1| predicted protein [Populus trichocarpa]
gi|222844099|gb|EEE81646.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 163/361 (45%), Gaps = 86/361 (23%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR+ G + P + + A V+FRI+ P+ +IG V G+ G I +IR+ET A + +
Sbjct: 23 GKRQNTAGTNSPNQPLKSSPAA-VVFRILCPAPKIGTVTGEGGAVISQIRQETGAKVIVE 81
Query: 87 DAIARHEERVIII-------------SSKDND---NVVSDAEN----------------- 113
+ I +E++I+I S KD D NV +++N
Sbjct: 82 ENIPGCDEQIIVITGSDEKTEVSIEQSKKDGDEEANVAEESDNKNDGNEKEEEKEGVPVE 141
Query: 114 ---ALQQIAAL---ILKDDDSNSEASKVAAGHVAANT------IRLLIAGSQAGCLIGMS 161
+++ +++ +L EA V G N +RLL+ SQ GCL+G
Sbjct: 142 DSGTVKETSSMQKALLLVSGKMFEADPVTDGGDEENNKPSTFILRLLVLSSQVGCLLGKG 201
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++ SGA I I ++LP+C+S SD +V+I+G++ AV AL + QL ENP
Sbjct: 202 GSVIKQMSAESGAQIRISPRDRLPICSSV--SDELVEITGEIDAVRKALQSVSKQLLENP 259
Query: 222 PRQVISISPA---------YNYSAIRP------------AQPF---------------VE 245
PR S PA +S RP +P+ ++
Sbjct: 260 PRDHDSF-PANPSGTSSHSSGHSHPRPEAYLQRHSFSGRGKPYAVRSRDRHESVIQDQMK 318
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P D +TF +L VGG+IG+ G+ I ++ E+G IKV G + + R I G A
Sbjct: 319 PV-PDVLTFRLLCHNERVGGVIGKGGTIIKILKQETGCDIKVMEGVSDSEDRVIVISGLA 377
Query: 306 Q 306
Sbjct: 378 H 378
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 106/174 (60%), Gaps = 14/174 (8%)
Query: 49 DVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
DVL FR++ + ++G VIGK G I+ +++ET IK+ + ++ E+RVI+IS + D+
Sbjct: 322 DVLTFRLLCHNERVGGVIGKGGTIIKILKQETGCDIKVMEGVSDSEDRVIVISGLAHPDD 381
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+S ++A+ ++ I SN E + +A RLL++ +Q GCL+G G +
Sbjct: 382 RISAPQDAVIRVQTRIAMAI-SNKEKAIIA---------RLLVSSNQIGCLLGKGGAIMS 431
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++R SSGA I IL +Q+P CAS ES+ VVQI+G+ V AL++I +LR +
Sbjct: 432 EMRKSSGAYIRILGKDQIPNCAS--ESEGVVQINGEFEVVKEALLQITTRLRHH 483
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
VSGK D +G D + K + R++V S Q+G ++GK G I+++ E+ A I+
Sbjct: 159 VSGKMFEADPVTDGGD-EENNKPSTFILRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIR 217
Query: 85 IADAIARHEERVIIISSKDNDNV-----VSDAENALQQIAALIL----KDDDS 128
I+ +R+ I SS ++ V + ALQ ++ +L +D DS
Sbjct: 218 ISP-----RDRLPICSSVSDELVEITGEIDAVRKALQSVSKQLLENPPRDHDS 265
>gi|326512112|dbj|BAJ96037.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 541
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 58/306 (18%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR + P D ++R + SR+IG +IG+ G +++R +T+A I+I
Sbjct: 23 GKRRNPGDDTYAPGP------DDTVYRYLCTSRKIGSIIGRGGEIAKQLRSDTQAKIRIG 76
Query: 87 DAIARHEERVIIISS--------KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
+++ +ERVI I S +D ++ V A++AL ++ + DD ++ ++ + G
Sbjct: 77 ESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLATDDGPVNKENEESLG 136
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC+IG G I+ +R+ +G+ I +L+ LPLCA++ D ++
Sbjct: 137 QV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGSQIRVLSNEHLPLCATS--GDELLL 191
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQ-------------------------VISISPAY- 232
I+GD V AL+++ ++L NP R V+ I+P
Sbjct: 192 ITGDPMVVRKALLQVSSRLHGNPSRSQHLLASSLNQPFPVGSRLGSSSTAPVVGITPMVS 251
Query: 233 -----------NYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
++ +I QP E +S + +L + + VGG+IG+ G I +IR ES
Sbjct: 252 PYGRYKGDMVGDWPSI--YQPRREVSSPKEFSLRLLCAAANVGGVIGKGGGIIKQIRQES 309
Query: 282 GAMIKV 287
GA IKV
Sbjct: 310 GAFIKV 315
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 12/148 (8%)
Query: 74 KIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEA 132
+IR+E+ A IK+ D+ + ++ +I +S+K+ ++ VS +A ++ + D+ S
Sbjct: 304 QIRQESGAFIKV-DSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAESGE 362
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ T RLL++ S+ GCLIG G I ++R +S A I I++ +P AS E
Sbjct: 363 --------PSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDE 414
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLREN 220
+V ISGD+ +AL++I +L+ N
Sbjct: 415 --EMVLISGDLDFARHALLQITTRLKAN 440
>gi|356518382|ref|XP_003527858.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 676
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 148/354 (41%), Gaps = 101/354 (28%)
Query: 27 GKRRREDGEIE--GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
GKRRR G G P V+FR++ + +IG VIGK G I +IR+ET ++
Sbjct: 15 GKRRRSSGGFSSLGVSPG------SVVFRLLCHASRIGGVIGKGGSIISQIRQETGVKLR 68
Query: 85 IADAIARHEERVIIISSKDN----DNV-----VSDAENALQQIAALILKDD--------- 126
I +A+ +ERVI IS + DN V+D ++ + KDD
Sbjct: 69 IEEAVPGCDERVITISGSEKETEEDNTEQGKEVNDNDDGGSEGKDREEKDDGDGNEDKRE 128
Query: 127 -------DSNSEASKVA-------------------------AGHVAANTIRLLIAGSQA 154
DS SE A + ++ +RLLI +Q
Sbjct: 129 KDAVPVEDSKSEKGNSAIWKAISLVFERMVEGVEETTEGDEESNKPSSFFLRLLILTAQV 188
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GC++G G I+++ SGA I IL ++LP CASA SD +VQISG V V AL +
Sbjct: 189 GCVLGKGGSVIKRMAAESGAQIRILPKDKLPACASA--SDEIVQISGSVEVVRKALQSVS 246
Query: 215 NQLRENPPRQVISIS--------------PAYNYSAIRPAQPFVE------------PTS 248
QL ENPPR S+S P +N S +PF P
Sbjct: 247 QQLLENPPRDHDSLSAKSTGPSSHSFGQFPPHNRSFSAQGEPFASGPHDISAFHSAAPLI 306
Query: 249 ADY---------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ +TF +L VG +IG+ G+ I ++ E+ + IKV
Sbjct: 307 PKFHEAAIHGRMRPLQEMLTFRLLCPAERVGNIIGKGGAIIKTVQQETASEIKV 360
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 111/199 (55%), Gaps = 15/199 (7%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
+ R + + FR++ P+ ++G +IGK G I+ +++ET + IK+ +A E+ VI+IS
Sbjct: 317 RMRPLQEMLTFRLLCPAERVGNIIGKGGAIIKTVQQETASEIKVLEAPPDSEDCVIVISG 376
Query: 102 KDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+ ++ +S + A+ ++ I K + +A R L++ +Q GCL+G
Sbjct: 377 PAHPEDRISPVQEAVFRVQTRIAKPIPDAKDHIMLA---------RFLVSSTQIGCLLGK 427
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R SGA I IL +++P CAS E + V+Q++G++ AV +AL++I +L+ +
Sbjct: 428 GGSIITEMRKKSGAHIRILGKDKVPKCAS--EDEEVIQVNGEIEAVHDALLQITTRLKHH 485
Query: 221 PPRQVISISPAYNYSAIRP 239
R P+ NY + P
Sbjct: 486 CFRDSY---PSVNYPSNSP 501
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 118/305 (38%), Gaps = 91/305 (29%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD-----AIARHEERVIIIS 100
K R+++ + Q+G V+GK G I+++ E+ A I+I A A + ++ IS
Sbjct: 173 KPSSFFLRLLILTAQVGCVLGKGGSVIKRMAAESGAQIRILPKDKLPACASASDEIVQIS 232
Query: 101 SKDNDNVVSDAENALQQIAALIL----KDDDSNSEASK---------------------- 134
V ALQ ++ +L +D DS S S
Sbjct: 233 GS-----VEVVRKALQSVSQQLLENPPRDHDSLSAKSTGPSSHSFGQFPPHNRSFSAQGE 287
Query: 135 --------VAAGHVAAN---------------------TIRLLIAGSQAGCLIGMSGQNI 165
++A H AA T RLL + G +IG G I
Sbjct: 288 PFASGPHDISAFHSAAPLIPKFHEAAIHGRMRPLQEMLTFRLLCPAERVGNIIGKGGAII 347
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+ ++ + + I +L A D V+ ISG PA +P ++
Sbjct: 348 KTVQQETASEIKVLE-------APPDSEDCVIVISG--PA--------------HPEDRI 384
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADYVTF-EMLISESLVGGLIGRCGSNISRIRNESGAM 284
+ A R A+P P + D++ L+S + +G L+G+ GS I+ +R +SGA
Sbjct: 385 SPVQEAVFRVQTRIAKPI--PDAKDHIMLARFLVSSTQIGCLLGKGGSIITEMRKKSGAH 442
Query: 285 IKVYG 289
I++ G
Sbjct: 443 IRILG 447
>gi|356507955|ref|XP_003522728.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 678
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 149/354 (42%), Gaps = 99/354 (27%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKRR+ G D V+FR++ + +IG VIGK G I +IR ET +KI
Sbjct: 15 GKRRKSSGGFSPLD----VSPGSVVFRLLCHASRIGSVIGKGGSIISQIRLETGVKVKIE 70
Query: 87 DAIARHEERVIIISS----------------KDNDNVVSDAENALQQIAALILKDDDSNS 130
+A+ +ERVI IS DND+V S+ ++ ++ + ++D
Sbjct: 71 EAVPGCDERVITISGSDKEAEEYTAEQGKEVNDNDDVGSEGKDGEEKNGSDGNGNEDKEE 130
Query: 131 ------EASKVAAGHVA------------------------------ANTIRLLIAGSQA 154
E SK G+ A + +RLLI +Q
Sbjct: 131 KDAVPVEDSKSEKGNSAIWKAISLVFERMVEGVEETTEGDEESNKSSSFFLRLLILTAQV 190
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GC++G G I+++ SGA I IL +++P+CASA D +VQISG V V AL +
Sbjct: 191 GCVLGKGGSVIKRMAAESGAQIRILPKDKVPVCASAF--DEIVQISGSVEVVRKALQSVS 248
Query: 215 NQLRENPPRQVISIS--------------PAYNYSAIRPAQPF------------VEPTS 248
QL ENPPR S+S P +N+S +PF P
Sbjct: 249 QQLLENPPRDHESLSAKSTGPSSHSFGQFPPHNHSFAAQGEPFATGPHDISAFHSAPPLI 308
Query: 249 ADY---------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ +TF +L VG +IG+ G+ I ++ E+ + IKV
Sbjct: 309 PKFHEAAIHGRTRPLQEMLTFRLLCPVERVGNIIGKGGAIIKTVQQETVSEIKV 362
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 111/199 (55%), Gaps = 15/199 (7%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
+ R + + FR++ P ++G +IGK G I+ +++ET + IK+ +A E+ VI+IS
Sbjct: 319 RTRPLQEMLTFRLLCPVERVGNIIGKGGAIIKTVQQETVSEIKVLEAPPDSEDCVIVISG 378
Query: 102 KDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+ ++ VS + A+ ++ I K ++ + +A R L++ +Q GCL+G
Sbjct: 379 PAHPEDRVSPVQEAVFRVQTRIAKPIPDANDHTMLA---------RFLVSSNQIGCLLGK 429
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R SGA I IL +++P CAS E + V+Q++G++ AV AL++I +L+ +
Sbjct: 430 GGSIITEMRKKSGAHIRILGKDKVPKCAS--EDEEVIQVNGEIEAVHEALLQITTRLKHH 487
Query: 221 PPRQVISISPAYNYSAIRP 239
R P+ NY + P
Sbjct: 488 FFRDSY---PSVNYPSNSP 503
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 120/305 (39%), Gaps = 91/305 (29%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
K+ R+++ + Q+G V+GK G I+++ E+ A I+I +++V + +S ++
Sbjct: 175 KSSSFFLRLLILTAQVGCVLGKGGSVIKRMAAESGAQIRILP-----KDKVPVCASAFDE 229
Query: 106 NV-----VSDAENALQQIAALIL----KDDDSNSEASK---------------------- 134
V V ALQ ++ +L +D +S S S
Sbjct: 230 IVQISGSVEVVRKALQSVSQQLLENPPRDHESLSAKSTGPSSHSFGQFPPHNHSFAAQGE 289
Query: 135 --------VAAGHVAAN---------------------TIRLLIAGSQAGCLIGMSGQNI 165
++A H A T RLL + G +IG G I
Sbjct: 290 PFATGPHDISAFHSAPPLIPKFHEAAIHGRTRPLQEMLTFRLLCPVERVGNIIGKGGAII 349
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+ ++ + + I +L A D V+ ISG PA +P +V
Sbjct: 350 KTVQQETVSEIKVLE-------APPDSEDCVIVISG--PA--------------HPEDRV 386
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADYVTF-EMLISESLVGGLIGRCGSNISRIRNESGAM 284
+ A R A+P P + D+ L+S + +G L+G+ GS I+ +R +SGA
Sbjct: 387 SPVQEAVFRVQTRIAKPI--PDANDHTMLARFLVSSNQIGCLLGKGGSIITEMRKKSGAH 444
Query: 285 IKVYG 289
I++ G
Sbjct: 445 IRILG 449
>gi|225458964|ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 701
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 153/356 (42%), Gaps = 110/356 (30%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-- 107
V+FR++ P+ + G VIGK G I +IR+ET +++ + ++ +ERV++I+ D D
Sbjct: 45 VVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEAD 104
Query: 108 ----------------VSDAE-----------------------NALQQIAALILK---- 124
VSD + +++Q+ L+ +
Sbjct: 105 NEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQKALLLVFERMAE 164
Query: 125 --------DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
D+DSN + V +RLL+ SQ GCL+G G I+++ SGA I
Sbjct: 165 GESETNGGDEDSNKSPTFV---------VRLLVLSSQVGCLLGKGGSVIKQMSAESGAQI 215
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------- 229
IL ++LPLCAS SD +VQI+G++ A AL I QL ENPPR +S
Sbjct: 216 RILPRDKLPLCASP--SDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTNPTGSS 273
Query: 230 --------------PAYNYSAIRPAQPF---VEPTSA----------------------D 250
P NYS P+ V T D
Sbjct: 274 SHLFGPPLPRSEAQPPPNYSFPAQGAPYAAGVRDTDYHSNTPQLHKFHESGMPGWMKPQD 333
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
+TF +L + VGG+IG+ G+ I ++NE+G IKV G + + R I GSA
Sbjct: 334 ILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAH 389
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 46 KAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKD 103
K QD+L FR++ ++G +IGK G I+ ++ ET IK+ D + E+RVI IS S
Sbjct: 330 KPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAH 389
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D+ +S A++A+ ++ + I++ + E + +A RLL++ +Q GCL+G G
Sbjct: 390 PDDRISPAQDAVLRVQSRIVRAIPDSKEKTVIA---------RLLVSSTQIGCLLGKGGA 440
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R SGA I IL +Q+P CAS E++ VVQI+G+ AV AL++I +LR + R
Sbjct: 441 IIAEMRKLSGAHIRILGKDQIPKCAS--ENEEVVQINGEFEAVQEALLQITTRLRHHHFR 498
Query: 224 QVISISPAYNYSAIRPAQPF 243
S++ N + PF
Sbjct: 499 DAFSVNHPSNPAFTDQVPPF 518
>gi|147845094|emb|CAN78473.1| hypothetical protein VITISV_026793 [Vitis vinifera]
Length = 709
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 153/356 (42%), Gaps = 110/356 (30%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-- 107
V+FR++ P+ + G VIGK G I +IR+ET +++ + ++ +ERV++I+ D D
Sbjct: 45 VVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEAD 104
Query: 108 ----------------VSDAE-----------------------NALQQIAALILK---- 124
VSD + +++Q+ L+ +
Sbjct: 105 NEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQKALLLVFERMAE 164
Query: 125 --------DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
D+DSN + V +RLL+ SQ GCL+G G I+++ SGA I
Sbjct: 165 GESETNGGDEDSNKSPTFV---------VRLLVLSSQVGCLLGKGGSVIKQMSAESGAQI 215
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------- 229
IL ++LPLCAS SD +VQI+G++ A AL I QL ENPPR +S
Sbjct: 216 RILPRDKLPLCASP--SDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTNPTGSS 273
Query: 230 --------------PAYNYSAIRPAQPF---VEPTSA----------------------D 250
P NYS P+ V T D
Sbjct: 274 SHLFGPPLPRSEAQPPPNYSFPAQGAPYAAGVRDTDYHSNTPQLHKFHESGMPGXMKPQD 333
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
+TF +L + VGG+IG+ G+ I ++NE+G IKV G + + R I GSA
Sbjct: 334 ILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAH 389
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 115/200 (57%), Gaps = 13/200 (6%)
Query: 46 KAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKD 103
K QD+L FR++ ++G +IGK G I+ ++ ET IK+ D + E+RVI IS S
Sbjct: 330 KPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAH 389
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D+ +S A++A+ ++ + I++ + E + +A RLL++ +Q GCL+G G
Sbjct: 390 PDDRISPAQDAVLRVQSRIVRAIPDSKEKTVIA---------RLLVSSTQIGCLLGKGGA 440
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R SGA I IL +Q+P CAS E++ VVQI+G+ AV AL++I +LR + R
Sbjct: 441 IIAEMRKLSGAHIRILGKDQIPKCAS--ENEEVVQINGEFEAVQEALLQITTRLRHHHFR 498
Query: 224 QVISISPAYNYSAIRPAQPF 243
S++ N + PF
Sbjct: 499 DAFSVNHPSNPAFTDQVPPF 518
>gi|384253488|gb|EIE26963.1| hypothetical protein COCSUDRAFT_59455 [Coccomyxa subellipsoidea
C-169]
Length = 648
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 140/307 (45%), Gaps = 56/307 (18%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R +D ++E KR A V +R++ P+ +IG VIGK G IQ++R+ T A IK+
Sbjct: 10 RHSDDVQMEAGVVKRSAAGAMVEYRLLCPATRIGTVIGKGGSVIQQMRDSTGARIKVEPE 69
Query: 89 IARHEERVIIISSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
+A ER+I +SS D + A+ AL + + + + D + + V +R+
Sbjct: 70 VAGCSERLISLSSSDEPGAELCRAQEALFAVQSRLSEADAAQEDTCCV---------VRM 120
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ +Q GC++G G+ I LR +GA I + LP CA + +S +V + G+ AV
Sbjct: 121 LVEQAQVGCVLGKGGEVISDLRRRTGANIRVSDKRDLPACAGSEDS--LVAVKGEAQAVS 178
Query: 208 NALVEIGNQLRENPPR--QVISISPAYNYSAIRPA-----------QPFVEPTSADY--- 251
+AL ++ LR + R Q +N +A+ A QP EP A
Sbjct: 179 DALRQLSALLRTHSQRKPQQARAPMTFNITAVATAAVQPEQAQHRRQPMREPVLAPIARP 238
Query: 252 ----------------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
V +L+ + +G +IGR G I IR+++GA
Sbjct: 239 HQCHNCLPDAHAMQPRMTAVQEASAVVEVQLRLLVPATHIGCVIGRRGEMIRTIRDDTGA 298
Query: 284 MIKVYGG 290
IKV+ G
Sbjct: 299 HIKVHEG 305
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 40/198 (20%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI------ADAIARHE----ERVII 98
+V R++VP+ IG VIG+ G I+ IR++T A IK+ A A E +RVI
Sbjct: 266 EVQLRLLVPATHIGCVIGRRGEMIRTIRDDTGAHIKVHEGSQGARAFPPSEKKGVDRVIT 325
Query: 99 I-SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC- 156
+ +++ VS E A+ +A +L +G IR+L+ Q G
Sbjct: 326 VAAAEAAGAAVSPTEEAVCLMALCLLGP-----------SGLPPVPCIRILVPTPQGGTA 374
Query: 157 ----------LIGMSGQNIEKLRNSSGATIVILAP------NQLPLCASAHESDRVVQIS 200
++G G I ++R SGA V L P LP +A + +VVQI
Sbjct: 375 EALSLLQVGGVLGKGGATITQVRKDSGAG-VRLVPLEAEDDRWLPRDVAAGQMHKVVQIE 433
Query: 201 GDVPAVLNALVEIGNQLR 218
G + A + A+ + QLR
Sbjct: 434 GPITATVKAVRAVCAQLR 451
>gi|147789223|emb|CAN69138.1| hypothetical protein VITISV_022038 [Vitis vinifera]
Length = 569
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 111/187 (59%), Gaps = 18/187 (9%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK Q+V+F+I+ + ++G VIGK G ++ ++ E A+I + +A +ER+I I
Sbjct: 212 DPK--TSQQEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITI 269
Query: 100 SSKDN-DNVVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ +N ++ S A+N + + I A I K DS S+ S V+A RL++ +Q
Sbjct: 270 TASENPESRYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSA--------RLVVPSNQ 321
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
GCL+G G I ++R +SGA I I+ +Q+P CAS E+D+VVQISG+ V + L I
Sbjct: 322 VGCLMGKGGTIISEMRKASGAGIRIIGSDQVPKCAS--ENDQVVQISGEFVNVQDGLYHI 379
Query: 214 GNQLREN 220
+LR+N
Sbjct: 380 TGRLRDN 386
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 41/150 (27%)
Query: 196 VVQISGDVPAVLNALVEIGNQLRENP----------------PRQ--------------- 224
V+QI GDV AV ALV + +L++ P P+Q
Sbjct: 123 VLQIEGDVLAVKKALVAVSRRLQDCPNVDKTKLIGGRPLEVVPQQSLPDPRVDLFQQRGS 182
Query: 225 VISISPAYNYSAIRPAQPF---------VEP-TSADYVTFEMLISESLVGGLIGRCGSNI 274
V+ P+ S ++P ++P TS V F++L S VGG+IG+ G+ +
Sbjct: 183 VLPPIPSNTISYASGSRPLSINTERISTLDPKTSQQEVIFKILCSNDRVGGVIGKGGTIV 242
Query: 275 SRIRNESGAMIKVYGGKGEQKHRHIQFGGS 304
++NE+GA I V E R I S
Sbjct: 243 KALQNEAGASISVGAPVAECDERLITITAS 272
>gi|225464083|ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 648
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 111/187 (59%), Gaps = 18/187 (9%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK Q+V+F+I+ + ++G VIGK G ++ ++ E A+I + +A +ER+I I
Sbjct: 291 DPK--TSQQEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITI 348
Query: 100 SSKDN-DNVVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ +N ++ S A+N + + I A I K DS S+ S V+A RL++ +Q
Sbjct: 349 TASENPESRYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSA--------RLVVPSNQ 400
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
GCL+G G I ++R +SGA I I+ +Q+P CAS E+D+VVQISG+ V + L I
Sbjct: 401 VGCLMGKGGTIISEMRKASGAGIRIIGSDQVPKCAS--ENDQVVQISGEFVNVQDGLYHI 458
Query: 214 GNQLREN 220
+LR+N
Sbjct: 459 TGRLRDN 465
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 147/306 (48%), Gaps = 50/306 (16%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A V FR++ + +IG VIGK G +++++ +T A I++ D+ + + RVI++ + + N
Sbjct: 48 AGHVAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVN 107
Query: 107 VVSDAENALQQIAA-----LILKDDDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLIG 159
+ + +++ A +L+ + E + V G + RLL SQ G +IG
Sbjct: 108 RRIALQGSSEEVEASAAQEAVLRVFERILEVAAVVDGVPPGGVVSCRLLAETSQVGSVIG 167
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G+ +EK+R SG+ I +L +LP CA++ +D +V+I GDV AV ALV + +L++
Sbjct: 168 KGGKVVEKIRRESGSKIKVLTAEKLPTCAAS--TDEMVEIEGDVLAVKKALVAVSRRLQD 225
Query: 220 NP----------------PRQ---------------VISISPAYNYSAIRPAQPF----- 243
P P+Q V+ P+ S ++P
Sbjct: 226 CPNVDKTKLIGGRPLEVVPQQSLPDPRVDLFQQRGSVLPPIPSNTISYASGSRPLSINTE 285
Query: 244 ----VEP-TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRH 298
++P TS V F++L S VGG+IG+ G+ + ++NE+GA I V E R
Sbjct: 286 RISTLDPKTSQQEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERL 345
Query: 299 IQFGGS 304
I S
Sbjct: 346 ITITAS 351
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 118/303 (38%), Gaps = 89/303 (29%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI------------ADAIARHEERVI 97
V R++ + Q+G VIGK G ++KIR E+ + IK+ D + E V+
Sbjct: 151 VSCRLLAETSQVGSVIGKGGKVVEKIRRESGSKIKVLTAEKLPTCAASTDEMVEIEGDVL 210
Query: 98 IISS---------KDNDNV------------------VSDAENALQQIAALILKDDDSNS 130
+ +D NV + D L Q +L SN+
Sbjct: 211 AVKKALVAVSRRLQDCPNVDKTKLIGGRPLEVVPQQSLPDPRVDLFQQRGSVLPPIPSNT 270
Query: 131 EASKVAAGHVAANT----------------IRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
+ + ++ NT ++L + + G +IG G ++ L+N +GA
Sbjct: 271 ISYASGSRPLSINTERISTLDPKTSQQEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGA 330
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+I + AP A +R++ I+ ENP + SPA N
Sbjct: 331 SISVGAP-------VAECDERLITITAS----------------ENPESRY---SPAQNG 364
Query: 235 SAI---RPAQPFVEP-----TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
+ R + +E + V+ +++ + VG L+G+ G+ IS +R SGA I+
Sbjct: 365 VILVFNRSIEAGIEKGLDSGSKGSPVSARLVVPSNQVGCLMGKGGTIISEMRKASGAGIR 424
Query: 287 VYG 289
+ G
Sbjct: 425 IIG 427
>gi|296088778|emb|CBI38228.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 111/187 (59%), Gaps = 18/187 (9%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK Q+V+F+I+ + ++G VIGK G ++ ++ E A+I + +A +ER+I I
Sbjct: 228 DPK--TSQQEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITI 285
Query: 100 SSKDN-DNVVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ +N ++ S A+N + + I A I K DS S+ S V+A RL++ +Q
Sbjct: 286 TASENPESRYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSA--------RLVVPSNQ 337
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
GCL+G G I ++R +SGA I I+ +Q+P CAS E+D+VVQISG+ V + L I
Sbjct: 338 VGCLMGKGGTIISEMRKASGAGIRIIGSDQVPKCAS--ENDQVVQISGEFVNVQDGLYHI 395
Query: 214 GNQLREN 220
+LR+N
Sbjct: 396 TGRLRDN 402
>gi|168039902|ref|XP_001772435.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676232|gb|EDQ62717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 375
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 109/172 (63%), Gaps = 4/172 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR++VP +++G +IG++G ++++ EET++ IKI + + ER++++S++ D +
Sbjct: 12 DNVFRLVVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMVSAREDPEAA 71
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A L ++ +++ + S +++A G ++ RLL+A +QAG LIG G I+
Sbjct: 72 ISPAMEGLLRVHRRVIEGAEPESVDAEIAPGGAPVSS-RLLVAATQAGSLIGRQGATIKS 130
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++++SGA + +L +LPLCA A DRVV++ GD V A+ + + LR+
Sbjct: 131 IQDTSGANVRVLPAEELPLCALA--DDRVVEVQGDPRNVQRAMELVVSHLRK 180
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
VT M I S +IG G+NIS +R SGA I + + ++ GSA QV A
Sbjct: 282 VTQHMQIPLSYADAIIGSAGANISYMRRTSGATITIQETRSVPGEMTVEIHGSASQVQTA 341
Query: 312 KQRVDEYI 319
+Q + ++
Sbjct: 342 QQLIQNFM 349
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 38/168 (22%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+ K AG N RL++ + G +IG G+ ++++ + + I IL +P A
Sbjct: 1 DGEKKWAGWPGDNVFRLVVPVQKVGGIIGRKGEFVKRMCEETRSRIKIL--EGVPGTA-- 56
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVE---PT 247
+R+V +S RE+P +ISPA +R + +E P
Sbjct: 57 ---ERIVMVSA----------------REDPE---AAISPAME-GLLRVHRRVIEGAEPE 93
Query: 248 SADY--------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
S D V+ +L++ + G LIGR G+ I I++ SGA ++V
Sbjct: 94 SVDAEIAPGGAPVSSRLLVAATQAGSLIGRQGATIKSIQDTSGANVRV 141
>gi|326505208|dbj|BAK02991.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 513
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 7/192 (3%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+++E ++EG D + D +FRI+VP++++G +IG++G I+K+ E++KA IKI D
Sbjct: 93 KQQESLQVEGEDKRWPGWPGDSVFRILVPAQKVGAIIGRKGEFIKKMCEQSKARIKILDG 152
Query: 89 IARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
ER +IIS+KD D +S A + L +I I D S+ E + G RL
Sbjct: 153 PPGVTERAVIISAKDEPDEPISPAMDGLLRIHKRIT--DGSDGEFGQPQRGASNVGPTRL 210
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ SQAG LIG G I+ +++SS + + I+ N P+ A DRVV+I G+ V
Sbjct: 211 LVPASQAGSLIGKQGATIKSIQDSSKSVVRIVE-NVPPV---ALNDDRVVEIQGEPLGVH 266
Query: 208 NALVEIGNQLRE 219
A+ I N LR+
Sbjct: 267 KAVELIANHLRK 278
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRV 315
M I S +IG G++IS IR +SGA + + +G ++ GSA QV A+Q +
Sbjct: 389 MQIPLSYADAVIGAAGASISYIRRQSGAAVTIQESRGAPGEMTVEIIGSASQVQTAQQLI 448
Query: 316 DEYI 319
++
Sbjct: 449 QNFM 452
>gi|357159179|ref|XP_003578365.1| PREDICTED: poly(rC)-binding protein 2-like [Brachypodium
distachyon]
Length = 629
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 108/173 (62%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G +IGK G I+ ++ +T A++K+ DA+A +ERVI+IS+++N +
Sbjct: 251 QEIVFRMICLNEMVGGIIGKGGATIRALQSDTGASVKVIDAVADSDERVIVISARENSEM 310
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ + I SEAS + V A RLL+ GCL+G G I
Sbjct: 311 MHSPAQDAVLRVYSRI-------SEASMDKSSAVPA---RLLVPSQHIGCLLGKGGSIIA 360
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++RN +GA+I I Q+P C A +D +VQ++G+ ++ +AL+ I ++R+
Sbjct: 361 EMRNVTGASIRIFGNEQIPRC--AQRNDELVQVTGNFQSIQDALLHITGRIRD 411
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 45/200 (22%)
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI-VILAPNQ 183
DD E K G V R+L AG Q GC++G G+ +E++R SGA I V +Q
Sbjct: 97 DDAGEGEEEKEVTGVVGC---RMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNKDQ 153
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP---------------PRQVISI 228
+P CA + D ++ ISG A AL+ + L++NP P +
Sbjct: 154 VPPCAL--QGDELIHISGSFSAARKALLLVSTCLQDNPRLETSNFSTGRSFGPPGSGVGC 211
Query: 229 SPAYNYSAIRPAQPFVEPTSADY---------------------VTFEMLISESLVGGLI 267
P + + R ++ P DY + F M+ +VGG+I
Sbjct: 212 PPGVDSHSQRS---YLPPHIPDYHARNFSSNVAAPGPRFFIEQEIVFRMICLNEMVGGII 268
Query: 268 GRCGSNISRIRNESGAMIKV 287
G+ G+ I +++++GA +KV
Sbjct: 269 GKGGATIRALQSDTGASVKV 288
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 136/324 (41%), Gaps = 106/324 (32%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-VSDA 111
R++ Q+G V+GK G ++++R+E+ A I++ R++++V + + ++ + +S +
Sbjct: 115 RMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVF----RNKDQVPPCALQGDELIHISGS 170
Query: 112 ENALQQIAALI---LKDD---------------------------DSNSEASKVA----- 136
+A ++ L+ L+D+ DS+S+ S +
Sbjct: 171 FSAARKALLLVSTCLQDNPRLETSNFSTGRSFGPPGSGVGCPPGVDSHSQRSYLPPHIPD 230
Query: 137 ------AGHVAAN----------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+ +VAA R++ G +IG G I L++ +GA++ ++
Sbjct: 231 YHARNFSSNVAAPGPRFFIEQEIVFRMICLNEMVGGIIGKGGATIRALQSDTGASVKVID 290
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN-----YS 235
A A +RV+ IS REN + SPA + YS
Sbjct: 291 -------AVADSDERVIVISA----------------REN---SEMMHSPAQDAVLRVYS 324
Query: 236 AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK 295
I A ++ +SA V +L+ +G L+G+ GS I+ +RN +GA I+++G
Sbjct: 325 RISEAS--MDKSSA--VPARLLVPSQHIGCLLGKGGSIIAEMRNVTGASIRIFGN----- 375
Query: 296 HRHIQFGGSAQQVALAKQRVDEYI 319
+Q+ QR DE +
Sbjct: 376 ----------EQIPRCAQRNDELV 389
>gi|148907101|gb|ABR16694.1| unknown [Picea sitchensis]
Length = 490
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 116/203 (57%), Gaps = 9/203 (4%)
Query: 21 PRHDVSGKRRREDGEI---EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
PR+ G++R + EI G++ K + +FR++VPS+++G +IG++G ++K+ E
Sbjct: 18 PRNANPGQKRGREEEIGTGTGAEKKWPGWPGENVFRMLVPSQKVGGIIGRKGEFVKKMCE 77
Query: 78 ETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVA 136
ET++ IKI D ++ ERV+++S+K+ D +S A + + ++ I++ D + A
Sbjct: 78 ETRSRIKILDGLSGTPERVVMVSAKEEPDATISPAMDGILKVHKRIIEGIDEVGRTQQAA 137
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
G RLL+AG Q+G LIG G I+ ++ +SG ++ +P CA A D+V
Sbjct: 138 GG---PTITRLLLAGIQSGSLIGKQGATIKSIQENSGVAAKVVGSEDIPYCALA--DDKV 192
Query: 197 VQISGDVPAVLNALVEIGNQLRE 219
++I G+ V AL + + LR+
Sbjct: 193 LEIQGEPANVHKALELVVSHLRK 215
>gi|308081899|ref|NP_001183640.1| uncharacterized protein LOC100502234 [Zea mays]
gi|238013618|gb|ACR37844.1| unknown [Zea mays]
gi|414867002|tpg|DAA45559.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867003|tpg|DAA45560.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867004|tpg|DAA45561.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
Length = 541
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 114/205 (55%), Gaps = 18/205 (8%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G +RR G D D ++R + SR+IG +IG+ G +++R ET+A I+I
Sbjct: 20 GSKRRNPG-----DDTYAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIG 74
Query: 87 DAIARHEERVIII---SSKDN-----DNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
+++ +ERV+ I S K N ++ V A++AL ++ + D+ +E S+ +
Sbjct: 75 ESVPGCDERVVTIFSTSRKTNTIDGAEDEVCPAQDALFRVHERLASDEGLGNEDSEEISP 134
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
V T+RLL+ Q GC+IG GQ I+ +R+ +GA I +L+ + +P CA + D ++Q
Sbjct: 135 QV---TVRLLVPSDQIGCIIGKGGQIIQGIRSETGAQIRVLSNDHIPACAIS--GDELLQ 189
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR 223
ISGD V AL ++ ++L NP +
Sbjct: 190 ISGDTVVVRKALHQVSSRLHNNPSK 214
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 74 KIREETKATIKIADAIARHEERVII-ISSKD--NDNVVSDAENALQQIAALILKDDDSNS 130
+IR+E+ A IK+A + + ++ II +S+K+ D V + A++ K D ++
Sbjct: 302 QIRQESGALIKVASSNSDPDDDCIITVSAKEFFEDPVSPTIDAAVRLQPRCSEKSDLESA 361
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E S T RLL++ S+ GCLIG G I ++R +S A + IL+ +P A+
Sbjct: 362 EQSY---------TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANVRILSKENVPKVAA- 411
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLREN 220
E D +VQI+G + NALV+I +L+ N
Sbjct: 412 -EDDEMVQITGGLDVARNALVQIATRLKAN 440
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 125/299 (41%), Gaps = 95/299 (31%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD-----AIARHEERVIIISSKDN 104
V R++VPS QIG +IGK G IQ IR ET A I++ A A + ++ IS
Sbjct: 136 VTVRLLVPSDQIGCIIGKGGQIIQGIRSETGAQIRVLSNDHIPACAISGDELLQIS---G 192
Query: 105 DNVVSDAENALQQIAALILKDDDSNSE---ASKVA------------------------- 136
D VV AL Q+++ L ++ S S+ AS +
Sbjct: 193 DTVV--VRKALHQVSSR-LHNNPSKSQHLLASSLTQPYPGSTHLGGSSTAPVVGITPVIP 249
Query: 137 -----AGHVAAN-----------------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
G VA + ++RLL A + G +IG G I+++R SGA
Sbjct: 250 PYGGYKGDVAGDWPSLYQPRRDESSAKEFSLRLLCAAANVGGVIGKGGGIIKQIRQESGA 309
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
I + + N P + D ++ +S + E+P +SP +
Sbjct: 310 LIKVASSNSDP------DDDCIITVSA-------------KEFFEDP------VSPTID- 343
Query: 235 SAIRPAQPF------VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+A+R QP +E Y T +L+S S +G LIG+ GS I+ IR S A +++
Sbjct: 344 AAVR-LQPRCSEKSDLESAEQSYTT-RLLVSTSRIGCLIGKGGSIITEIRRTSRANVRI 400
>gi|255561873|ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 548
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 148/345 (42%), Gaps = 80/345 (23%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR++VP++++G +IG++G I+KI EET+A IKI D ER +++S+K+ D+ +
Sbjct: 153 VFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVSAKEEPDSALP 212
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I+ D + ++S ++G + RLL+ SQAG LIG G ++ ++
Sbjct: 213 PAMDGLLRVHKRIV--DGLDGDSSHASSGTGTKVSTRLLVPASQAGSLIGKQGGTVKSIQ 270
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA-------------------L 210
+S + +L LP+ A + DRVV++ GD V A L
Sbjct: 271 EASSCVVRVLGAEDLPVFAL--QDDRVVEVLGDAAGVHKAVELIASHLRKFLVDRSIIPL 328
Query: 211 VEI-----------------------------------GNQLRENPPRQVISISPAYNYS 235
E+ GN PPRQ+ + P +
Sbjct: 329 FEMHMQMQNPPHMEHMPPHQSWGPPQGIPPNAGGGPGYGNPQYMPPPRQIENYYPPADLP 388
Query: 236 AIRPAQPF---------------------VEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
QP P+ +T +M I S +IG G++I
Sbjct: 389 PPMEKQPHQGISAYGREAPMGVHGSSNSQAAPSMITQITQQMQIPLSYADAVIGTAGTSI 448
Query: 275 SRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
S IR SGA + + +G ++ G+A QV A+Q + ++
Sbjct: 449 SYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFM 493
>gi|356557593|ref|XP_003547100.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 710
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 109/178 (61%), Gaps = 5/178 (2%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+A Q+V FRI+ + ++G VIGK G+ ++ ++ ET ATI I A+A E+R+I I++ +
Sbjct: 313 KALKQEVTFRILCSNDRVGGVIGKGGNIVRALQSETGATISIGPAVAECEDRLITIAASE 372
Query: 104 N-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
N ++ S A+ A + + ++ S + G + T+RL++ SQ GCLIG G
Sbjct: 373 NPESRYSPAQKAAVLVFSRSIEVGFEKGLDSGLNKGSIV--TVRLVVPSSQVGCLIGKGG 430
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ ++R ++GA I I+ +Q+P CAS ++D+VVQISG+ +V +AL +LR+N
Sbjct: 431 VIVSEMRKATGANIRIIGTDQVPKCAS--DNDQVVQISGEFSSVQDALYNAMGRLRDN 486
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 30/224 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII------SSK- 102
V FR++ + +IG VIGK G I+ +++ T A I+I DA +R+I++ S K
Sbjct: 45 VAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQELPDRIILVIADAALSGKI 104
Query: 103 --DNDNV--VSDAENALQQIAALILKD---DDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
N+ V VS A+ AL ++ IL+ D S +V + RL+ +QAG
Sbjct: 105 LLRNEEVIEVSKAQEALLKVFDRILRSGGGDRSVDVGDRVM-------SCRLVADAAQAG 157
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG G+ +E+++ +G I +L + LPLCASA SD +++I G V +V ALV +
Sbjct: 158 SVIGKGGKVVERIKKETGCKIRVLT-DDLPLCASA--SDEIIEIEGRVSSVKKALVAVSQ 214
Query: 216 QLRENPP--RQVISISPAY---NYSAIRPAQPFVEPTSADYVTF 254
+L++ P R + S Y Y A+ A P T+A VT
Sbjct: 215 RLQDCHPVDRTKMMGSKPYEIVQYEALD-ALPRATSTAAPRVTL 257
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 30/160 (18%)
Query: 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL-APNQLPLCASAHESDRV 196
GHVA RLL S+ G +IG SG I+ L+ S+GA I I AP +LP DR+
Sbjct: 43 GHVA---FRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQELP--------DRI 91
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD------ 250
+ + D A L+ + + N+ +VI +S A + ++ + D
Sbjct: 92 ILVIAD--AALSGKILLRNE-------EVIEVSKAQE-ALLKVFDRILRSGGGDRSVDVG 141
Query: 251 --YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
++ ++ + G +IG+ G + RI+ E+G I+V
Sbjct: 142 DRVMSCRLVADAAQAGSVIGKGGKVVERIKKETGCKIRVL 181
>gi|168018585|ref|XP_001761826.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686881|gb|EDQ73267.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 355
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 104/156 (66%), Gaps = 5/156 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR+IVP +++G +IG++G ++++ EET++ IKI + + ER++++S++ D +
Sbjct: 9 DNVFRLIVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMVSAREDPEAA 68
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A L ++ +++ + S +++A G ++ RLL+A +QAG LIG G I+
Sbjct: 69 ISPAMEGLLRVHRRVIEGAEPESADAEIAPGGAPVSS-RLLVAATQAGSLIGRQGATIKS 127
Query: 168 LRNSSGATIVIL-APNQLPLCASAHESDRVVQISGD 202
+++SSGAT+ +L A +LPLCA A DRVV+++G+
Sbjct: 128 IQDSSGATVRVLPAAEELPLCALA--DDRVVEVTGE 161
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 36/164 (21%)
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
K AG N RL++ + G +IG G+ ++++ + + I IL +P A
Sbjct: 1 KKWAGWPGDNVFRLIVPVQKVGGIIGRKGEFVKRMCEETRSRIKIL--EGVPGTA----- 53
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN--YSAIRPAQPFVEPTSADY 251
+R+V +S RE+P +ISPA R EP SAD
Sbjct: 54 ERIVMVSA----------------REDPE---AAISPAMEGLLRVHRRVIEGAEPESADA 94
Query: 252 --------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V+ +L++ + G LIGR G+ I I++ SGA ++V
Sbjct: 95 EIAPGGAPVSSRLLVAATQAGSLIGRQGATIKSIQDSSGATVRV 138
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 243 FVEPTSADY---VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
V PT A VT M I S +IG G+NIS +R SGA I + + +
Sbjct: 268 IVPPTPAPVITQVTQHMQIPLSYADAIIGGAGANISYMRRTSGATITIQETRSVPGEMTV 327
Query: 300 QFGGSAQQVALAKQRV 315
+ GSA QV A+Q +
Sbjct: 328 EIHGSASQVQTAQQLI 343
>gi|326504604|dbj|BAK06593.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 105/173 (60%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G VIGK G I+ ++ ET A++K+ D +A +ER+I+IS+++N +
Sbjct: 155 QEIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIVISARENSEM 214
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S +++AL ++ + I SEAS + V A RLL+ GCL+G G I
Sbjct: 215 MRSPSQDALLRVYSKI-------SEASMDKSSSVPA---RLLVPAQHIGCLLGKGGSIIA 264
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA+I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 265 EMRKLTGASIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 315
>gi|326513114|dbj|BAK06797.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 105/173 (60%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G VIGK G I+ ++ ET A++K+ D +A +ER+I+IS+++N +
Sbjct: 250 QEIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIVISARENSEM 309
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S +++AL ++ + I SEAS + V A RLL+ GCL+G G I
Sbjct: 310 MRSPSQDALLRVYSKI-------SEASMDKSSSVPA---RLLVPAQHIGCLLGKGGSIIA 359
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA+I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 360 EMRKLTGASIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 410
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 49/184 (26%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI-VILAPNQLPLCASAHESDRVVQISGDV 203
R+L AG Q GC++G G+ +E++R SGA I V Q+P CA + D ++ ISG
Sbjct: 112 CRMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNREQVPPCAL--QGDELIHISGSF 169
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP---------AQPFVEPTS------ 248
A AL+ + L++N PR S N+ + RP P V+P S
Sbjct: 170 SAARKALLLVSTCLQDN-PRPDTS-----NFPSGRPFGPPGSGVGCPPGVDPHSQRSYLP 223
Query: 249 ----ADY---------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
DY + F M+ +VGG+IG+ GS I +++E+GA
Sbjct: 224 PPHVPDYHARNFSSNGAAPGPRFFVEQEIVFRMICLNDMVGGVIGKGGSTIRALQSETGA 283
Query: 284 MIKV 287
+KV
Sbjct: 284 SVKV 287
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 123/321 (38%), Gaps = 99/321 (30%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIK--------------------IADAIARH 92
R++ Q+G V+GK G ++++R+E+ A I+ I+ + +
Sbjct: 113 RMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNREQVPPCALQGDELIHISGSFSAA 172
Query: 93 EERVIIISSKDNDNVVSDAEN-------ALQQIAALILKDDDSNSEASKVAAGHV----A 141
+ ++++S+ DN D N D +S+ S + HV A
Sbjct: 173 RKALLLVSTCLQDNPRPDTSNFPSGRPFGPPGSGVGCPPGVDPHSQRSYLPPPHVPDYHA 232
Query: 142 AN------------------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
N R++ G +IG G I L++ +GA++ ++ P
Sbjct: 233 RNFSSNGAAPGPRFFVEQEIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDP-- 290
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN-----YSAIR 238
A +R++ IS REN + SP+ + YS I
Sbjct: 291 -----VADSDERIIVISA----------------REN---SEMMRSPSQDALLRVYSKIS 326
Query: 239 PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRH 298
A ++ +S+ V +L+ +G L+G+ GS I+ +R +GA I+++G
Sbjct: 327 EAS--MDKSSS--VPARLLVPAQHIGCLLGKGGSIIAEMRKLTGASIRIFGN-------- 374
Query: 299 IQFGGSAQQVALAKQRVDEYI 319
+Q+ QR DE +
Sbjct: 375 -------EQIPRCAQRNDELV 388
>gi|294464716|gb|ADE77865.1| unknown [Picea sitchensis]
Length = 348
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 103/174 (59%), Gaps = 15/174 (8%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD--N 104
++++FRI+ P+++IG VIG+ G I+ ++++ A IKI DA+ +ER+IIIS+ +
Sbjct: 19 GEELVFRILCPNKKIGSVIGRAGSIIKSLQDDIGAKIKITDAVPGSDERIIIISANEVLE 78
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
DN +S A+ AL I + I+ D + V T +LLI +Q GCL+G G
Sbjct: 79 DN-LSPAQEALLHIQSQIV---DLGPDKDGVI-------TTKLLIPSNQTGCLLGKGGAI 127
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
I ++R + A I IL LP C A +SD +VQI GD+ A ALV++ ++LR
Sbjct: 128 ISEMRKQTRANIRILPREDLPPC--ALDSDEMVQIVGDIRAARAALVQVTSRLR 179
>gi|226529077|ref|NP_001146029.1| hypothetical protein [Zea mays]
gi|219885375|gb|ACL53062.1| unknown [Zea mays]
gi|414589866|tpg|DAA40437.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 624
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 104/173 (60%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I+ + +G +IGK G I+ ++ ET A IKI + +A +ERV+ I++++N ++
Sbjct: 248 QEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITARENSDM 307
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ + I SEAS + H A RLL+ GCL+G G I
Sbjct: 308 LHSPAQDAVVRVYSRI-------SEASIDRSSHTPA---RLLVPSQHIGCLLGKGGSIIS 357
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 358 EMRKITGANIRIFGNEQIPRC--AQRNDEMVQVTGSFQSIQDALLHITGRIRD 408
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 48/233 (20%)
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDS--NSEASKVAAGHVAANTIRLLIA 150
+E V++IS D + A A + + ++ D++ E + G V R+L A
Sbjct: 63 DEAVLVISGPDTP---AAAVRAWEHVVGHRVEGDEAMGGEEEEREVTGAVGC---RMLAA 116
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
G Q GC++G G+ +E++R GA I + N+ L A D ++ ISG V AL
Sbjct: 117 GWQVGCVLGKGGKTVERMRQECGAQIRVFR-NREQLPPWAPPGDELIHISGSFSQVRKAL 175
Query: 211 VEIGNQLRENP---------------PRQVISISPAYNYSAIRPAQPFVEPTSADY---- 251
+ + L++NP P P + + R ++ P DY
Sbjct: 176 LAVSTCLQDNPRPDTHNIPIGRPFGLPGSGTGCPPGMDPHSQR---SYLPPHIPDYHTRN 232
Query: 252 -----------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ F M+I +VG +IG+ GS I +++E+GA IK+
Sbjct: 233 YPSNAGPPGPRFFFEQEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKI 285
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 128/337 (37%), Gaps = 88/337 (26%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK----- 84
R E E G + + R V R++ Q+G V+GK G ++++R+E A I+
Sbjct: 89 RVEGDEAMGGEEEEREVTGAVGCRMLAAGWQVGCVLGKGGKTVERMRQECGAQIRVFRNR 148
Query: 85 ---------------IADAIARHEERVIIISSKDNDNVVSDAEN---------------- 113
I+ + ++ + ++ +S+ DN D N
Sbjct: 149 EQLPPWAPPGDELIHISGSFSQVRKALLAVSTCLQDNPRPDTHNIPIGRPFGLPGSGTGC 208
Query: 114 -----ALQQIAALILKDDDSNSEASKVAAGHVAAN-------TIRLLIAGSQAGCLIGMS 161
Q + L D ++ AG R++I G +IG
Sbjct: 209 PPGMDPHSQRSYLPPHIPDYHTRNYPSNAGPPGPRFFFEQEIVFRMIILNEMVGSIIGKG 268
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I L++ +GA I IL P A +RVV I+ REN
Sbjct: 269 GSTIRALQSETGACIKILEP-------VADSDERVVAITA----------------REN- 304
Query: 222 PRQVISISPAYN-----YSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
+ SPA + YS I A ++ +S + +L+ +G L+G+ GS IS
Sbjct: 305 --SDMLHSPAQDAVVRVYSRISEAS--IDRSS--HTPARLLVPSQHIGCLLGKGGSIISE 358
Query: 277 IRNESGAMIKVYGGK-----GEQKHRHIQFGGSAQQV 308
+R +GA I+++G + ++ +Q GS Q +
Sbjct: 359 MRKITGANIRIFGNEQIPRCAQRNDEMVQVTGSFQSI 395
>gi|414589867|tpg|DAA40438.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 640
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 104/173 (60%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I+ + +G +IGK G I+ ++ ET A IKI + +A +ERV+ I++++N ++
Sbjct: 248 QEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITARENSDM 307
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ + I SEAS + H A RLL+ GCL+G G I
Sbjct: 308 LHSPAQDAVVRVYSRI-------SEASIDRSSHTPA---RLLVPSQHIGCLLGKGGSIIS 357
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 358 EMRKITGANIRIFGNEQIPRC--AQRNDEMVQVTGSFQSIQDALLHITGRIRD 408
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 48/233 (20%)
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDS--NSEASKVAAGHVAANTIRLLIA 150
+E V++IS D + A A + + ++ D++ E + G V R+L A
Sbjct: 63 DEAVLVISGPDTP---AAAVRAWEHVVGHRVEGDEAMGGEEEEREVTGAVGC---RMLAA 116
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
G Q GC++G G+ +E++R GA I + N+ L A D ++ ISG V AL
Sbjct: 117 GWQVGCVLGKGGKTVERMRQECGAQIRVFR-NREQLPPWAPPGDELIHISGSFSQVRKAL 175
Query: 211 VEIGNQLRENP---------------PRQVISISPAYNYSAIRPAQPFVEPTSADY---- 251
+ + L++NP P P + + R ++ P DY
Sbjct: 176 LAVSTCLQDNPRPDTHNIPIGRPFGLPGSGTGCPPGMDPHSQR---SYLPPHIPDYHTRN 232
Query: 252 -----------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ F M+I +VG +IG+ GS I +++E+GA IK+
Sbjct: 233 YPSNAGPPGPRFFFEQEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKI 285
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 128/337 (37%), Gaps = 88/337 (26%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK----- 84
R E E G + + R V R++ Q+G V+GK G ++++R+E A I+
Sbjct: 89 RVEGDEAMGGEEEEREVTGAVGCRMLAAGWQVGCVLGKGGKTVERMRQECGAQIRVFRNR 148
Query: 85 ---------------IADAIARHEERVIIISSKDNDNVVSDAEN---------------- 113
I+ + ++ + ++ +S+ DN D N
Sbjct: 149 EQLPPWAPPGDELIHISGSFSQVRKALLAVSTCLQDNPRPDTHNIPIGRPFGLPGSGTGC 208
Query: 114 -----ALQQIAALILKDDDSNSEASKVAAGHVAAN-------TIRLLIAGSQAGCLIGMS 161
Q + L D ++ AG R++I G +IG
Sbjct: 209 PPGMDPHSQRSYLPPHIPDYHTRNYPSNAGPPGPRFFFEQEIVFRMIILNEMVGSIIGKG 268
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I L++ +GA I IL P A +RVV I+ REN
Sbjct: 269 GSTIRALQSETGACIKILEP-------VADSDERVVAITA----------------REN- 304
Query: 222 PRQVISISPAYN-----YSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
+ SPA + YS I A ++ +S + +L+ +G L+G+ GS IS
Sbjct: 305 --SDMLHSPAQDAVVRVYSRISEAS--IDRSS--HTPARLLVPSQHIGCLLGKGGSIISE 358
Query: 277 IRNESGAMIKVYGGK-----GEQKHRHIQFGGSAQQV 308
+R +GA I+++G + ++ +Q GS Q +
Sbjct: 359 MRKITGANIRIFGNEQIPRCAQRNDEMVQVTGSFQSI 395
>gi|357121091|ref|XP_003562255.1| PREDICTED: poly(rC)-binding protein 1-like [Brachypodium
distachyon]
Length = 518
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 111/197 (56%), Gaps = 8/197 (4%)
Query: 25 VSGKRRREDG-EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+G+ +++D ++E +D + D +FRI+VP ++G +IG++G I+++ EE+KA I
Sbjct: 88 FNGEVKQQDNLQVEANDKRWPGWPGDSVFRILVPVHKVGAIIGRKGEFIKRMCEESKARI 147
Query: 84 KIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA 142
KI D ER ++IS+KD D +S A + L +I I D S+ E + G
Sbjct: 148 KILDGPPGVPERAVMISAKDEPDEQISPAMDGLLRIHKRIA--DGSDGEFGQTQRGTGTM 205
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
RLL+ SQAG LIG G I+ +++SS A + I+ N P+ + DRVV+I G+
Sbjct: 206 GPTRLLVPASQAGSLIGKQGATIKSIQDSSKAVVRIVE-NVPPVALN---DDRVVEIQGE 261
Query: 203 VPAVLNALVEIGNQLRE 219
+V A+ I + LR+
Sbjct: 262 PLSVQKAVELIASHLRK 278
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
A VT M I S +IG G++IS IR SGA + + +G +++ GSA QV
Sbjct: 384 ASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGAAVTIQESRGAPGEMNVEIIGSASQV 443
Query: 309 ALAKQRVDEYI 319
A+Q + ++
Sbjct: 444 QTAQQLIQNFM 454
>gi|351698877|gb|EHB01796.1| Poly(rC)-binding protein 4 [Heterocephalus glaber]
Length = 443
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 152/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 58 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 106
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 107 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 166
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 167 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 220
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+ SA
Sbjct: 221 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSAQ 280
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 281 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 337
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 338 IALA-----QYLITACLETA 352
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 272 VPGLDPSAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 327
Query: 96 VIIIS 100
+ I+
Sbjct: 328 HVTIT 332
>gi|15217969|ref|NP_175569.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical protein [Arabidopsis thaliana]
gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical protein; 15135-12645 [Arabidopsis thaliana]
gi|31711718|gb|AAP68215.1| At1g51580 [Arabidopsis thaliana]
gi|110735740|dbj|BAE99849.1| hypothetical protein [Arabidopsis thaliana]
gi|332194564|gb|AEE32685.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 621
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 141/314 (44%), Gaps = 65/314 (20%)
Query: 36 IEGSDPKRRAK----AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA- 90
+E S KR A A+ V FR++ P+ + G +IGK G I+ ++ T + I++ D I
Sbjct: 1 MEFSTSKRPATTATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPV 60
Query: 91 RHEERVIII----SSKDNDNVVSDAENA-------------------------------- 114
EERV++I K +++ V D+EN
Sbjct: 61 PSEERVVLIIAPSGKKKDESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMAL 120
Query: 115 LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
L+ ++ DD + + ++ G + R+++ G+Q L+ G+ I+K+R SGA
Sbjct: 121 LRVFERIVFGDDAATVDGDELDKGE-SEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGA 179
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN-------------- 220
+ I + +Q+P CA D V+Q++G +V AL+ + N L+E+
Sbjct: 180 IVRISSTDQIPPCA--FPGDVVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDECPFPQP 237
Query: 221 ---PPRQVISISPAYNYSAIRPAQ----PFVEPTSADYVTFEMLISESLVGGLIGRCGSN 273
P + P +++ P PF P + V F +L VG LIG+ G+
Sbjct: 238 GYPPEYHSMEYHPQWDHPPPNPMPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAV 297
Query: 274 ISRIRNESGAMIKV 287
+ ++NESGA IKV
Sbjct: 298 VRALQNESGASIKV 311
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 102/175 (58%), Gaps = 17/175 (9%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++V FR++ P+ ++G +IGK G ++ ++ E+ A+IK++D EER+I+IS+++N +
Sbjct: 274 EEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 333
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A++ + ++ I+ ++ AA RLL+ G L+G G I
Sbjct: 334 RHSLAQDGVMRVHNRIV----------EIGFEPSAAVVARLLVHSPYIGRLLGKGGHLIS 383
Query: 167 KLRNSSGATIVILAPNQLPLCASAHES--DRVVQISGDVPAVLNALVEIGNQLRE 219
++R ++GA+I + A +Q A+ +ES D +VQ+ G++ V +AL +I +LRE
Sbjct: 384 EMRRATGASIRVFAKDQ----ATKYESQHDEIVQVIGNLKTVQDALFQILCRLRE 434
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 110/287 (38%), Gaps = 88/287 (30%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-----IARHEERVIIISSKDND 105
L R+IV Q+ ++ K G IQKIRE++ A ++I+ A + VI ++ K +
Sbjct: 149 LCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSS 208
Query: 106 --NVVSDAENALQQIAALILKDD----------DSNSEASKVAAGHVAANTI-------- 145
+ N LQ+ A D+ + +S H N +
Sbjct: 209 VKKALLLVTNCLQESGAPPTWDECPFPQPGYPPEYHSMEYHPQWDHPPPNPMPEDVGPFN 268
Query: 146 ----------RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD- 194
RLL + G LIG G + L+N SGA+I + P H+S+
Sbjct: 269 RPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPT--------HDSEE 320
Query: 195 RVVQISG-------------DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
R++ IS V V N +VEIG
Sbjct: 321 RIIVISARENLERRHSLAQDGVMRVHNRIVEIG--------------------------- 353
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
EP++A V +L+ +G L+G+ G IS +R +GA I+V+
Sbjct: 354 --FEPSAA--VVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVF 396
>gi|356546743|ref|XP_003541782.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 663
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+A Q+V FRI+ + ++G VIGK G+ ++ ++ ET ATI I +A E+R+I I++ +
Sbjct: 305 KALQQEVSFRILCSNDRVGGVIGKGGNIVRALQSETGATISIGPLVAECEDRLITIAASE 364
Query: 104 N-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
N ++ S A+ A + + ++ S + G T+RL++ SQ GCLIG G
Sbjct: 365 NPESRYSPAQKAAVLVFSRSIEVGFEKELDSGLNKGSTV--TVRLVVPSSQVGCLIGKGG 422
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ ++R ++GA I I+ +Q+P CAS ++D+VVQISG+ +V +AL +LR+N
Sbjct: 423 VIVSEIRKATGANIRIIGTDQVPKCAS--DNDQVVQISGEFSSVQDALYNATGRLRDN 478
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 148/326 (45%), Gaps = 78/326 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII------SSK- 102
V FR++ + +IG VIGK G I+ +++ T A I+I DA +RVI++ S K
Sbjct: 45 VAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQESPDRVILVIADAALSCKV 104
Query: 103 --DNDNV--VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
N+ V VS A+ AL ++ IL + +E V G + RL+ +QAG +I
Sbjct: 105 LLRNEEVVEVSKAQEALLKVFDRIL---EVAAEMEGVDVGD-RVMSCRLVADSAQAGSVI 160
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+ +E+++ +G I +L + LPLCASA SD +++I G V +V ALV + +L+
Sbjct: 161 GKGGKVVERIKKETGCKIRVLT-DDLPLCASA--SDEMIEIEGRVSSVKKALVAVSQRLQ 217
Query: 219 ENP------------------------PRQVISISP------------------------ 230
+ P PR++++ +P
Sbjct: 218 DCPSVNRIKMMGNKPYEIVQYETLDALPREILTAAPRGTLTVVPHETVDHLLLRSSALST 277
Query: 231 -----------AYNYSAIRPAQPFVEPTSADY-VTFEMLISESLVGGLIGRCGSNISRIR 278
++ SA +EP + V+F +L S VGG+IG+ G+ + ++
Sbjct: 278 LSSSSNSYATRVHSLSAEVNRVSSLEPKALQQEVSFRILCSNDRVGGVIGKGGNIVRALQ 337
Query: 279 NESGAMIKVYGGKGEQKHRHIQFGGS 304
+E+GA I + E + R I S
Sbjct: 338 SETGATISIGPLVAECEDRLITIAAS 363
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 28/159 (17%)
Query: 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL-APNQLPLCASAHESDRV 196
GHVA RLL S+ G +IG SG I+ L+ S+GA I I AP + P DRV
Sbjct: 43 GHVA---FRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQESP--------DRV 91
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN-----YSAIRPAQPFVEPTS-AD 250
+ + D A L+ V + N+ +V+ +S A + I +E D
Sbjct: 92 ILVIAD--AALSCKVLLRNE-------EVVEVSKAQEALLKVFDRILEVAAEMEGVDVGD 142
Query: 251 YVTFEMLISESL-VGGLIGRCGSNISRIRNESGAMIKVY 288
V L+++S G +IG+ G + RI+ E+G I+V
Sbjct: 143 RVMSCRLVADSAQAGSVIGKGGKVVERIKKETGCKIRVL 181
>gi|413933627|gb|AFW68178.1| nucleic acid binding protein [Zea mays]
Length = 637
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 103/181 (56%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP++++G +IG++G I+K+ EETKA IKI D ER ++I
Sbjct: 221 DNKWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMI 280
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D +S A + L ++ I D S + +AG++ RLL+ SQAG LI
Sbjct: 281 SAKDEPDAPLSPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGPT--RLLVPSSQAGSLI 338
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ +++SS +IV + N P+ A DRVV+I G+ V A+ I + LR
Sbjct: 339 GKQGATIKSIQDSS-KSIVRIVENVPPV---ALNDDRVVEIQGEPLGVQEAVELISSHLR 394
Query: 219 E 219
+
Sbjct: 395 K 395
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
V +M I + +IG G++IS IR SGA + + +G ++ G+A QV A
Sbjct: 505 VAHDMHIPLAYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEITGTAAQVQTA 564
Query: 312 KQRVDEYI 319
+Q + ++
Sbjct: 565 QQLIQNFM 572
>gi|126336339|ref|XP_001367908.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Monodelphis
domestica]
Length = 410
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 70/337 (20%)
Query: 36 IEGSDPKRRAKAQ---DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
+ GSDP + + + R+I+ +++G +IGK+G +++IRE++ A I I++
Sbjct: 1 MSGSDPGLEEEPELSITLTLRMIMHGKEVGSIIGKKGETVKRIREQSSARITISEG---- 56
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIA 150
S + ++ + A+ ++I D + G ++ T+RL+I
Sbjct: 57 -------SCPERITTITGSTGAVFHAVSMIAFKLDEDLCTGPPNGGSISKPPVTLRLVIP 109
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
SQ G LIG +G I+++R ++GA + + A + LP + ++R V +SG A++ +
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCV 163
Query: 211 VEIGNQLRENPPR-QVISISPAYN-----------------YSAIRPAQ----------- 241
+I + E+PP+ I P+ + Y + PA+
Sbjct: 164 RQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGTVTPAEVSKLQQLSGHP 223
Query: 242 -PFVEPT-------SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---G 290
PF P+ SA + E L+ L+G +IGR GS IS IR SGA IK+ G
Sbjct: 224 VPFASPSVVPGLDPSAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEG 283
Query: 291 KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
GE RH+ GS +ALA +Y+ + ++ A
Sbjct: 284 SGE---RHVTITGSPVSIALA-----QYLITACLETA 312
>gi|224112243|ref|XP_002316129.1| predicted protein [Populus trichocarpa]
gi|222865169|gb|EEF02300.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 20/214 (9%)
Query: 24 DVSGKRRREDGEIEGSDP--KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
D G +RR G+ DP + +D ++R + P R+IG +IGK G +++R ++K+
Sbjct: 18 DYGGGKRRNPGD----DPSDQNTITNEDTVYRYLCPLRKIGSIIGKGGEIAKQLRADSKS 73
Query: 82 TIKIADAIARHEERVIII-SSKDNDNV-------VSDAENALQQIAALILKDDDSNSEAS 133
I+I++A+ ++ER++ I SS + N+ V A++AL + ++ +D +N+ A
Sbjct: 74 NIRISEAMPGYDERIVTIYSSSEETNLFGETGEYVCPAQDALFMVHDRVIAEDLNNAAAE 133
Query: 134 KVAA----GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
+ G V T+R+L+ Q GC+IG GQ I+ +R+ + A I I + LP A
Sbjct: 134 EEEGEDNFGEVQQVTVRMLVPADQIGCVIGKGGQVIQNIRSETCAQIRITKDDHLPPLAL 193
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ D ++ I G+ AV AL ++ +L ENP R
Sbjct: 194 S--IDELLLIHGEPSAVRKALYQVATRLHENPSR 225
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 27/221 (12%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D + + ++ R++ P+ IG VIGK G I++IR+E++A+IK+ + A ++ +I I
Sbjct: 269 DQRDESSTKEFSLRLVCPTANIGGVIGKGGGIIKQIRQESRASIKVDSSGAEGDDCIIFI 328
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
S+K+ S NA ++ + S S + T RLL+ SQ GCL+G
Sbjct: 329 SAKEFFEDQSPTMNAALRLQPRCSDKTEKESGDSVI--------TTRLLVGRSQIGCLMG 380
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV----------VQISGDVPAVLNA 209
G I ++RN + A I I++ + LP A E D + VQI+G + NA
Sbjct: 381 KGGAIISEMRNQTRANIRIISEDNLPKVAV--EDDEMVQVNVYNFNSVQITGSLEVASNA 438
Query: 210 LVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
L+++ +L+ N + ++ +A PA P++ P S D
Sbjct: 439 LLQVILRLKANLFGRDGAL------TAFPPALPYI-PMSLD 472
>gi|348581993|ref|XP_003476761.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Cavia porcellus]
Length = 403
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 152/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+ +A
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPAAQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RHI GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHITITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPAAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
I I+
Sbjct: 288 HITIT 292
>gi|297849822|ref|XP_002892792.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
gi|297338634|gb|EFH69051.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 20/219 (9%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQD-----------VLFRIIVPSRQIGKVIGKEGHRI 72
++ GKR E+ G+ +R D ++R + P ++ G +IGK G
Sbjct: 7 NIHGKRSNLQSELTGNGGSKRRNLHDDTDQNVIGSEETVYRYLCPVKKTGSIIGKGGDIA 66
Query: 73 QKIREETKATIKIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILK 124
++IR ETK+ ++I +A+ EERV+ I S D+ +V A +AL ++ +++
Sbjct: 67 KQIRSETKSNMRINEALPGCEERVVTIYSTNEELNHFGDDGELVCPALDALFKVHDMVVA 126
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
D D + G T+R+L+ Q GC+IG GQ I+ LRN + A I ++ + L
Sbjct: 127 DIDHDDGNDDDDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIK-DHL 185
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
P CA D ++QI G+ V AL ++ + L NP R
Sbjct: 186 PSCALTLSHDELLQIIGEPLVVREALYQVASLLHANPSR 224
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 96/179 (53%), Gaps = 16/179 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A++ I P+ +G VIGK G I +IR+ET ATI++ + ++ +I+ISSK+
Sbjct: 262 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDEDDCIIVISSKEF 321
Query: 105 DNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A NA LQQ SE A +A +T RLL++ SQ GCLIG
Sbjct: 322 YEDQSPAVNAAIRLQQRC----------SEKVGKDANDLAIST-RLLVSSSQIGCLIGKG 370
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R+ + A I IL +P A E + +VQI+G+ A + AL ++ +LR N
Sbjct: 371 GAVISEMRSVTRANIRILQKEDVP--KIAREDEEMVQITGNPDAAMKALTQVILRLRAN 427
>gi|449436912|ref|XP_004136236.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449522219|ref|XP_004168125.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 693
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 108/188 (57%), Gaps = 13/188 (6%)
Query: 35 EIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
+ E P R + ++L +R++ P+ ++G VIGK G ++ ++++T IK+ D E
Sbjct: 322 QYEACIPGRSKPSHEILSYRLLCPTERVGNVIGKGGAIVKTLQQDTGCDIKVVDGALDSE 381
Query: 94 ERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
+R+I+++ + D+ +S ++A+ ++ A I+K + E + VA R L++ +
Sbjct: 382 DRIILVAGPAHPDDRISPVQDAVFRVQARIVKAAADSKEQNLVA---------RFLVSSN 432
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
Q GCL+G G I ++R S+GA I IL Q+P CA E + VVQI+G+ V +A+ +
Sbjct: 433 QIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAG--EDEEVVQINGEPETVQDAMFQ 490
Query: 213 IGNQLREN 220
I +LR +
Sbjct: 491 ITTRLRHH 498
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 94/348 (27%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII----------- 99
+FR++ P +I ++G++G + KIREET I++ D I +ER+ +I
Sbjct: 47 VFRVLFPVSRIDSLVGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEVNP 106
Query: 100 ---SSKDNDNV----------------------VSDAE------NALQQIAALI---LKD 125
S +DN N V DA+ + L++ L+ + D
Sbjct: 107 EKKSKEDNKNSEVEENDGDIAKLKKKEDKDSPPVEDAKQKEVTHSQLRKALFLVSEKIFD 166
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
++ ++ + V + +RLL+ SQ GCL+G G ++++ + SGA I IL ++LP
Sbjct: 167 EEPEADGTDVEGDKLPTFILRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLP 226
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI----------------- 228
+ + +VQISG + V AL + QL ENPP +
Sbjct: 227 PFVATNV--ELVQISGGIDVVKKALELVFQQLIENPPNDKDPVASSNAAQSSRSSGQSLS 284
Query: 229 ----SP---AYN-----YSAIR-------------PAQ-----PFVEPTSADYVTFEMLI 258
SP ++N YS R P Q P S + +++ +L
Sbjct: 285 RAHESPRGSSFNTHGGPYSVPRDVGNFHSSAPSLAPKQYEACIPGRSKPSHEILSYRLLC 344
Query: 259 SESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
VG +IG+ G+ + ++ ++G IKV G + + R I G A
Sbjct: 345 PTERVGNVIGKGGAIVKTLQQDTGCDIKVVDGALDSEDRIILVAGPAH 392
>gi|226497902|ref|NP_001151605.1| nucleic acid binding protein [Zea mays]
gi|195648058|gb|ACG43497.1| nucleic acid binding protein [Zea mays]
Length = 524
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FRI+VP++++G +IG++G I+K+ EETKA IKI D ER ++IS+KD D +S
Sbjct: 122 VFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMISAKDEPDAPLS 181
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I D S + +AG++ RLL+ SQAG LIG G I+ ++
Sbjct: 182 PAMDGLLRVHKRITDSSDGESSQPQRSAGNIG--PTRLLVPSSQAGSLIGKQGATIKSIQ 239
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+SS +IV + N P+ A DRVV+I G+ V A+ I + LR+
Sbjct: 240 DSS-KSIVRIVENVPPV---ALNDDRVVEIQGEPLGVQKAVELISSHLRK 285
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
V +M I + +IG G++IS IR SGA + + +G ++ G+A QV A
Sbjct: 392 VAHDMHIPLAYADAVIGAAGASISYIRRHSGATVTIQESRGAPGDMTVEITGTAAQVQTA 451
Query: 312 KQRVDEYI 319
+Q + ++
Sbjct: 452 QQLIQNFM 459
>gi|169647179|gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrata subsp. petraea]
Length = 532
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 61/309 (19%)
Query: 36 IEGSDPKRRAKA-QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-ARHE 93
+E S KR A A + V FR++ P+ + G +IGK G I+ ++ T + I++ D I E
Sbjct: 227 MEFSSSKRPATAAESVHFRLLCPASRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSE 286
Query: 94 ERVIII----SSKDNDNVVSDAENA--------------------------------LQQ 117
ERV++I K +D+ V D+EN L+
Sbjct: 287 ERVVLIIAPSGKKKDDSNVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRV 346
Query: 118 IAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
+ ++ DD ++ + + G + + R+++ G+Q L+ G+ I+++R SGA +
Sbjct: 347 LERIVFGDDAASVDGDGLDKGE-SESLCRMIVRGNQVDFLMSKGGKMIQRIREDSGAIVR 405
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN--PPRQ------VISIS 229
I + +Q+P CA D V+QI+G +V AL+ I N L+E+ PP
Sbjct: 406 ISSTDQIPPCA--FPGDVVIQITGKFSSVKKALLLITNCLQESGAPPTWDECPFPQPGYP 463
Query: 230 PAYNYSAIRPAQ------------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRI 277
P Y+ P PF P + V+F +L VG LIG+ G+ + +
Sbjct: 464 PDYHSMEYHPQWDHPPNPMPEDVVPFNRPVVEEEVSFRLLCPADKVGSLIGKGGAVVRAL 523
Query: 278 RNESGAMIK 286
+NESGA IK
Sbjct: 524 QNESGASIK 532
>gi|147853553|emb|CAN81693.1| hypothetical protein VITISV_009249 [Vitis vinifera]
Length = 543
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 109/210 (51%), Gaps = 37/210 (17%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
+D ++R + P R+IG +IG+ G +++R ETK+ I+I + + EERV+ I S
Sbjct: 41 EDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETN 100
Query: 103 ---DNDNVVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
D +VS A++AL +I A L D+ EA +V T+R+L+ Q G
Sbjct: 101 PFGDTGELVSPAQDALFRVHDRIVAGELPADEEPEEAQQV--------TVRMLVPSDQIG 152
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV------------QISGDV 203
C+IG GQ I+ +R+ + A I IL LP CA + SD ++ QI GD
Sbjct: 153 CVIGKGGQVIQNIRSETRAQIRILKDEHLPPCALS--SDELLQAFGNVFWALTSQIIGDA 210
Query: 204 PAVLNALVEIGNQLRENPPRQ---VISISP 230
V AL ++ ++L ENP R ++S SP
Sbjct: 211 SVVRKALHQLASRLHENPSRSQHLLLSSSP 240
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ A++ R++ P+ IG VIGK G I++IR+E+ A+IK+ + A ++ +I IS+K+
Sbjct: 290 SSAKEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEF 349
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
E+ I A + + +A + ++ V T RLL+ S+ GCLIG G
Sbjct: 350 ------FEDPSPTIDAALRLQPRCSEKAERESSDSVV--TTRLLVPSSRIGCLIGKGGAI 401
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R+ + A I IL+ LP AS E D +VQI+G++ NAL+++ +L+ N
Sbjct: 402 ISEMRSVTRANIRILSKENLPKVAS--EDDEMVQITGELNVASNALLQVTLRLKAN 455
>gi|225445949|ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
vinifera]
Length = 466
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S+ K D +FR+IVP ++G +IG++G I+K+ EET+A I++ D +R+++
Sbjct: 67 SEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDRIVL 126
Query: 99 ISSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
IS ++ +S A +A+ ++ + +S + A VA +IRLL+A +QA L
Sbjct: 127 ISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCSIRLLVASTQAINL 186
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+ ++ S+GA++ +L+ +++P A+A E R+V++ G+ V AL + L
Sbjct: 187 IGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADE--RIVELQGEALKVQKALEAVVGHL 244
Query: 218 RE 219
R+
Sbjct: 245 RK 246
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRV 315
M I S +IG G+NI+ IR SGA++ V +G ++ G++ QV A+Q +
Sbjct: 346 MQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQTAQQLI 405
Query: 316 DEYI 319
E+I
Sbjct: 406 QEFI 409
>gi|357128987|ref|XP_003566150.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 729
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 12/174 (6%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-N 106
+ + FR++ S ++G +IGK G+ I+ I+++T IKI + + + E+RVI+IS + +
Sbjct: 393 EPLTFRLLCSSDKVGSIIGKGGNNIKTIQKDTGCEIKILETVPKSEDRVIVISGPAHPGD 452
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+S A+NA+ + I +N E + ++ RL+++ +Q GCL+G G I
Sbjct: 453 GISPAQNAILHVQRRITPPTANNKEGAAIS---------RLIVSPNQVGCLLGKGGSIIA 503
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++R S A IV+L+ +++P ESD VVQI+GD A+ AL++I +LR +
Sbjct: 504 EMRKLSKAHIVVLSKDKIP--KGVQESDEVVQITGDSEAIQEALMQITARLRNH 555
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 60/220 (27%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+ RLL+ SQ G L+G G I+++ SG I + + +LPLCA D + QI+G++
Sbjct: 233 SFRLLVLDSQVGWLLGNRGSVIKQMSADSGCEIRV-SKEKLPLCALL--KDELCQITGEL 289
Query: 204 PAVLNALVEIGNQLRENPPRQVISI-----SPAYNYSAIRP-------AQPFVEPTSA-- 249
+V L + L +PPR+ + S A+N S P + PF P+ A
Sbjct: 290 DSVRKGLNAVAQVLLTHPPRESDVLPSGLSSHAFNRSDALPPGMQPNFSLPFQGPSHARG 349
Query: 250 -------------------------------------------DYVTFEMLISESLVGGL 266
+ +TF +L S VG +
Sbjct: 350 PFDSIDPRPNIPPFPTFPDQRSNIPPFPAFPDALMHSHASVPPEPLTFRLLCSSDKVGSI 409
Query: 267 IGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
IG+ G+NI I+ ++G IK+ + + R I G A
Sbjct: 410 IGKGGNNIKTIQKDTGCEIKILETVPKSEDRVIVISGPAH 449
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
L RI+ P+ + G VIGK G I KIR+E I++ +A+ +ERVI+I+ + D S
Sbjct: 46 LIRILCPTEKCGNVIGKGGVIIAKIRQENGVKIRVDEAVPGCDERVIVITITEKDKEAS 104
>gi|218193355|gb|EEC75782.1| hypothetical protein OsI_12699 [Oryza sativa Indica Group]
Length = 510
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 7/195 (3%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+G+ +++D +D K + +FRI++P++++G +IG++G I+K+ EE+KA IKI
Sbjct: 84 NGEVKQQDSLPVEADKKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKI 143
Query: 86 ADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
D ER ++IS+KD D +S A + L ++ I D +S + +V
Sbjct: 144 LDGPPGVPERTVMISAKDEPDAPISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGPT- 202
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
RLL+ SQAG LIG G I+ +++SS + + I+ LPL A DRVV+I G+
Sbjct: 203 -RLLVPASQAGSLIGKQGATIKSIQDSSKSIVRIV--ETLPLVAL--NDDRVVEIQGEPV 257
Query: 205 AVLNALVEIGNQLRE 219
V AL I + LR+
Sbjct: 258 GVQKALESIASHLRK 272
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
A VT M I S +IG G++IS IR SGA + + +G ++ GSA QV
Sbjct: 379 ASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIGSASQV 438
Query: 309 ALAKQRVDEYI 319
A+Q V ++
Sbjct: 439 QTAQQLVQNFM 449
>gi|297601352|ref|NP_001050707.2| Os03g0627500 [Oryza sativa Japonica Group]
gi|255674723|dbj|BAF12621.2| Os03g0627500, partial [Oryza sativa Japonica Group]
Length = 512
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 7/195 (3%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+G+ +++D +D K + +FRI++P++++G +IG++G I+K+ EE+KA IKI
Sbjct: 86 NGEVKQQDSLPVEADKKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKI 145
Query: 86 ADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
D ER ++IS+KD D +S A + L ++ I D +S + +V
Sbjct: 146 LDGPPGVPERTVMISAKDEPDAPISPAMDGLFRVYKRITDGSDGDSGQPERNISNVG--P 203
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
RLL+ SQAG LIG G I+ +++SS + + I+ LPL A DRVV+I G+
Sbjct: 204 TRLLVPASQAGSLIGKQGATIKSIQDSSKSIVRIV--ETLPLVAL--NDDRVVEIQGEPV 259
Query: 205 AVLNALVEIGNQLRE 219
V AL I + LR+
Sbjct: 260 GVQKALESIASHLRK 274
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
A VT M I S +IG G++IS IR SGA + + +G ++ GSA QV
Sbjct: 381 ASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIGSASQV 440
Query: 309 ALAKQRVDEYI 319
A+Q V ++
Sbjct: 441 QTAQQLVQNFM 451
>gi|16924113|gb|AAL31692.1|AC092390_13 putative RNA binding protein [Oryza sativa Japonica Group]
gi|108709929|gb|ABF97724.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|215695360|dbj|BAG90551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625405|gb|EEE59537.1| hypothetical protein OsJ_11804 [Oryza sativa Japonica Group]
Length = 510
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 7/195 (3%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+G+ +++D +D K + +FRI++P++++G +IG++G I+K+ EE+KA IKI
Sbjct: 84 NGEVKQQDSLPVEADKKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKI 143
Query: 86 ADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
D ER ++IS+KD D +S A + L ++ I D +S + +V
Sbjct: 144 LDGPPGVPERTVMISAKDEPDAPISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGPT- 202
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
RLL+ SQAG LIG G I+ +++SS + + I+ LPL A DRVV+I G+
Sbjct: 203 -RLLVPASQAGSLIGKQGATIKSIQDSSKSIVRIV--ETLPLVAL--NDDRVVEIQGEPV 257
Query: 205 AVLNALVEIGNQLRE 219
V AL I + LR+
Sbjct: 258 GVQKALESIASHLRK 272
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
A VT M I S +IG G++IS IR SGA + + +G ++ GSA QV
Sbjct: 379 ASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIGSASQV 438
Query: 309 ALAKQRVDEYI 319
A+Q V ++
Sbjct: 439 QTAQQLVQNFM 449
>gi|300798415|ref|NP_001178812.1| poly(rC)-binding protein 4 [Rattus norvegicus]
Length = 403
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+ S
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|73985377|ref|XP_849987.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Canis lupus
familiaris]
gi|301767222|ref|XP_002919000.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
Length = 403
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 152/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+ A
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLDPGAQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
>gi|356496890|ref|XP_003517298.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 602
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 65/338 (19%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
E S+ + +V+FR++ + G VIGK G ++ + +T A+I A ++ H ER+
Sbjct: 269 ETSNRDSKGAEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASIIFAAPLSEHAERI 328
Query: 97 IIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN------TIRLLI 149
+ IS+ ++ ++ S A++A+ + A I++D + G + + T RLL+
Sbjct: 329 VTISAVESLESCNSPAQDAVILVFARIIED--------HIGKGFLQVSSMESPVTARLLV 380
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
A S C G GQ I +LR +GA I IL +P AS + D VVQI+G+ V NA
Sbjct: 381 ATSTVNCFSGNEGQVISELREVTGADIQILHGESVPNGAS--DEDVVVQITGEYRCVQNA 438
Query: 210 LVEIGNQLREN-PPRQVISIS-PAYNYSAIR---PAQPFVEPTSA--------------- 249
L +I +++R+N P +V++ + P N+ + +PF SA
Sbjct: 439 LYKITSRIRDNLSPNEVVAEARPKSNWKVNKDPIKGKPFARGKSAFPSGRFLPRNAGVHA 498
Query: 250 ----------------------------DYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
T E+++SE + G + G G N+ RIR S
Sbjct: 499 ETILQNGELHTDLSENLERGRGNMFATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQIS 558
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
GA++ VY + G+ Q A+ + +I
Sbjct: 559 GAIVTVYDPSVGTSGGKVVISGTPDQTFAAQSLLQAFI 596
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 25/218 (11%)
Query: 17 TEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIR 76
T P P+ + R P + + FR++ + +G +IG G + ++R
Sbjct: 13 TTPSPKRSNTTTTNRSSKR-----PVFKVLPGQIAFRLVCHASTVGGLIGSSGSIVSQLR 67
Query: 77 EETKATIKIADAIARHEERVIIISSK----------DNDNV-VSDAENALQQIAALILK- 124
ET I D+++ E+RVI++ D V VS A+ A+ ++ +
Sbjct: 68 RETGCKIHCEDSLSSAEDRVILVIGSLSPRKGLLLGDGGEVEVSSAQEAVVRVFERVWDL 127
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
+ + +++ G V + +LL SQ G ++G G+NI +RN++GA I + P
Sbjct: 128 EAEKGVNSNRAVNGEVFS---KLLAHTSQIGAVVGKGGKNITAIRNNTGAKIRVFPP--- 181
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
P CA+ E +VQI+G + AV AL+ + + L++ PP
Sbjct: 182 PQCATKDE--ELVQITGGILAVKKALISVSHCLQDCPP 217
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 119/309 (38%), Gaps = 65/309 (21%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI---A 86
R D E E RA +V +++ + QIG V+GK G I IR T A I++
Sbjct: 123 RVWDLEAEKGVNSNRAVNGEVFSKLLAHTSQIGAVVGKGGKNITAIRNNTGAKIRVFPPP 182
Query: 87 DAIARHEERVII-----------------------------------------ISSKDND 105
+ EE V I +SS N
Sbjct: 183 QCATKDEELVQITGGILAVKKALISVSHCLQDCPPLCKVPVTSSTPTVSSSDRLSSDPNA 242
Query: 106 NVVSDAENALQQIAALIL--KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ + L + L + + +SN +++ + G RLL + + AG +IG G
Sbjct: 243 ELFPHLNSLLTSMEGLSIYERTTNSNETSNRDSKGAEHEVVFRLLCSNNVAGSVIGKRGA 302
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ L + +GA+I+ AP S H ++R+V IS + +L N P
Sbjct: 303 IVRALESKTGASIIFAAP------LSEH-AERIVTISA-----VESLESC------NSPA 344
Query: 224 QVISISPAYNYSAIRPAQPFVEPTSADY-VTFEMLISESLVGGLIGRCGSNISRIRNESG 282
Q I + F++ +S + VT +L++ S V G G IS +R +G
Sbjct: 345 QDAVILVFARIIEDHIGKGFLQVSSMESPVTARLLVATSTVNCFSGNEGQVISELREVTG 404
Query: 283 AMIKVYGGK 291
A I++ G+
Sbjct: 405 ADIQILHGE 413
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
KV G +A RL+ S G LIG SG + +LR +G I C + S
Sbjct: 35 KVLPGQIA---FRLVCHASTVGGLIGSSGSIVSQLRRETGCKI---------HCEDSLSS 82
Query: 194 --DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSA-- 249
DRV+ + G + L+ G ++ + ++ ++ + A+ V A
Sbjct: 83 AEDRVILVIGSLSPRKGLLLGDGGEVEVSSAQE--AVVRVFERVWDLEAEKGVNSNRAVN 140
Query: 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
V ++L S +G ++G+ G NI+ IRN +GA I+V+
Sbjct: 141 GEVFSKLLAHTSQIGAVVGKGGKNITAIRNNTGAKIRVF 179
>gi|227497228|ref|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus]
gi|14715061|gb|AAH10694.1| Poly(rC) binding protein 4 [Mus musculus]
Length = 403
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+ S
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|12230430|sp|P57724.1|PCBP4_MOUSE RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957163|gb|AAG09239.1|AF176328_1 alphaCP-4 [Mus musculus]
Length = 403
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+ S
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGMDPSTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|384248562|gb|EIE22046.1| hypothetical protein COCSUDRAFT_43031 [Coccomyxa subellipsoidea
C-169]
Length = 243
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 103/180 (57%), Gaps = 16/180 (8%)
Query: 26 SGKRRREDGEIEGSDPKRRA------KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
+G +RR D D KR+A + ++R++V S+++G VIGK G ++ IR+ET
Sbjct: 73 AGSKRRYDDRDGPPDAKRQAIGAAEGPQTETVYRLLVQSKKVGSVIGKAGTIVKAIRDET 132
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSD-AENALQQIAALILKDDDSNSEASKVAAG 138
A I++ + + +ERVI+IS++ + +D A+ AL ++ A + + ++
Sbjct: 133 GARIRVVEGVPNCDERVIVISARSDAARHTDAAQEALFKVHARVHEHEEGPHPPP----- 187
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
A T R+L+ +QAGCLIG +G I+++R +SGA I IL LP C + +DRVVQ
Sbjct: 188 --ANATTRMLVCHTQAGCLIGKAGAIIKEIREASGAHIKILPAEDLPPCGLS--NDRVVQ 243
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
D+ +A A G RLL+ + G +IG +G ++ +R+ +GA I ++ +P
Sbjct: 87 DAKRQAIGAAEGPQTETVYRLLVQSKKVGSVIGKAGTIVKAIRDETGARIRVV--EGVPN 144
Query: 187 CASAHESDRVVQISG------DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
C +RV+ IS A AL ++ ++ E+
Sbjct: 145 C-----DERVIVISARSDAARHTDAAQEALFKVHARVHEHE------------------E 181
Query: 241 QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P P +A T ML+ + G LIG+ G+ I IR SGA IK+
Sbjct: 182 GPHPPPANA---TTRMLVCHTQAGCLIGKAGAIIKEIREASGAHIKI 225
>gi|449438568|ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 658
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 28/218 (12%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
QDV+F+I+ + +IG VIGK G ++ ++ E+ AT+ + ++ +ER+I I++ +N ++
Sbjct: 302 QDVVFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASENIES 361
Query: 107 VVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A+ A+ + + I K +S+S+ S V A RL++ +Q GC++G
Sbjct: 362 RYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVVA--------RLVVPSNQVGCVLGKG 413
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I ++R +G I I++ +Q+P CA+ ESD +VQISG+ V +AL + +LR+N
Sbjct: 414 GVIISEIRKVTGTNIRIISSDQVPNCAA--ESDEIVQISGEFSNVQDALYNVTGRLRDNL 471
Query: 222 PRQVISISPAYN------------YSAIRPAQPFVEPT 247
V+S S N Y +R P V T
Sbjct: 472 FSSVLSNSGTRNGGGTSVYPETSPYGRVRDTAPLVRST 509
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 132/292 (45%), Gaps = 59/292 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---------- 99
V FR++ + +IG VIGK G I+++++ T I++ +A + +RV+ +
Sbjct: 53 VAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSPALTSRV 112
Query: 100 -----SSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
S + V S A+ L ++ IL + + V RLL +Q
Sbjct: 113 FLEQNSGASGEEVEASKAQEGLLKVFERIL--EVAAEIEGVEVGAEVGVVYCRLLADVAQ 170
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G +IG G+ +EK+R SG I +L ++LP CA SD +++I GDV A+ AL+ +
Sbjct: 171 VGSVIGKGGKVVEKIRKESGCRIRVLT-DKLPACAGP--SDEMIEIEGDVWAIKKALLAV 227
Query: 214 GNQLRENPPRQVISISPA----------------YNYSAIRPAQP--------------- 242
+L++ PP + ++ PA +++ P P
Sbjct: 228 SRRLQDCPPSEKRTVRPAEAVIHETLPDLHMDHILQRNSVLPILPSSSNIFASGIHSLSI 287
Query: 243 ---FVEPTSADY----VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ P + V F++L + +GG+IG+ G+ + ++NESGA + V
Sbjct: 288 DADMLPPVDTNVAQQDVVFKILCANDRIGGVIGKGGTIVRALQNESGATVSV 339
>gi|12837891|dbj|BAB23990.1| unnamed protein product [Mus musculus]
Length = 403
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+ S
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|354476373|ref|XP_003500399.1| PREDICTED: poly(rC)-binding protein 4 [Cricetulus griseus]
gi|344252773|gb|EGW08877.1| Poly(rC)-binding protein 4 [Cricetulus griseus]
Length = 403
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+ S
Sbjct: 181 PYHPSLSLGTVLLSTNQGFSVQGQYGAVAPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|356530338|ref|XP_003533739.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 115/182 (63%), Gaps = 6/182 (3%)
Query: 41 PKRRAKAQ--DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
P++R D +FR+IVP ++G +IG++G I+K+ EET++ I++ DA +R+++
Sbjct: 42 PEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVL 101
Query: 99 ISSK-DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+S K D + +S A +A+ +I + ++++E + AAG +A ++IRLL+A +QA L
Sbjct: 102 VSGKEDPEAALSPAMDAVVRIFKRVSGFSETDAENQESAAG-LAFSSIRLLVASTQAINL 160
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+ ++ ++ A++ +L+ +++ A+A+E R+V+I G+ VL AL + L
Sbjct: 161 IGKQGSLIKSIQENTSASVRVLSGDEVQFYATANE--RIVEIQGEALKVLKALEAVVGHL 218
Query: 218 RE 219
R+
Sbjct: 219 RK 220
>gi|242040159|ref|XP_002467474.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
gi|241921328|gb|EER94472.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
Length = 452
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ EETKA ++I + ER++++S K++ +
Sbjct: 49 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPGLE 108
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A +AL ++ ++ D +E ++ AA G AA RLL+ G+QA LIG G I
Sbjct: 109 LPPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCAA---RLLVPGAQAINLIGKQGATI 165
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ S+GATI +++ ++ + +R+++I GD VL AL + N LR+
Sbjct: 166 KAIQESTGATIRVISVDERERPFYVTDDERIIEIQGDTEKVLKALQAVSNHLRK 219
>gi|255554418|ref|XP_002518248.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223542595|gb|EEF44134.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 451
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 106/172 (61%), Gaps = 5/172 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR+IVP ++G +IG++G I+K+ +ET+A I++ DA +RV++IS K D +
Sbjct: 60 DCVFRLIVPVLKVGSIIGRKGDLIKKMCDETRARIRVLDAPIGTPDRVVLISGKEDVEAP 119
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A +A+ ++ + + N A ++ A +A ++IRLL+A +QA LIG G I+
Sbjct: 120 LSPAMDAVIRVFKRVSGLPEGN--AQELGAAGIAFSSIRLLVASTQAINLIGKQGSIIKS 177
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ S+GA++ +L+ N++P + E R+V + G+ VL AL I LR+
Sbjct: 178 IQESTGASVRVLSENEVPFYVATDE--RIVDLQGEAMKVLEALEAIVGHLRK 227
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
VT M + S +IG G+NI IR SGA+I V +G ++ G+A +V +A
Sbjct: 327 VTQTMQVPISYAEEIIGIRGNNIEYIRRTSGAIITVNESRGLPDEIIVEIKGTASEVQMA 386
Query: 312 KQRVDEYI 319
+Q + E++
Sbjct: 387 QQLIQEFL 394
>gi|225463940|ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 442
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 108/191 (56%), Gaps = 7/191 (3%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
R +D I G + + + +FR++VP++++G +IG++G I+KI EET+A IKI D
Sbjct: 28 RDDDSAIGGGEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP 87
Query: 90 ARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
ER +++S+K+ D+ + A + L ++ I+ D ++S + G + RLL
Sbjct: 88 PGTAERAVMVSAKEEPDSSLPPAMDGLLKVHKRIV--DGLEGDSSHMPPG--GKVSTRLL 143
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
+A SQAG LIG G ++ ++ +S + +L LP+ A + DRVV++ G+ V
Sbjct: 144 VAASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFAL--QDDRVVEVVGEPIGVHK 201
Query: 209 ALVEIGNQLRE 219
A+ I + LR+
Sbjct: 202 AVELIASHLRK 212
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
AQP P+ VT +M I S +IG G++IS IR SGA + + +G +
Sbjct: 310 AQP--APSMITQVTQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTV 367
Query: 300 QFGGSAQQVALAKQRVDEYI 319
+ G+A QV A+Q + ++
Sbjct: 368 EINGTASQVQAAQQLIQNFM 387
>gi|417410720|gb|JAA51826.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 440
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 63/318 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ ER+ I+ +
Sbjct: 55 LTLRMLMQGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGS-----TA 107
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+A+ IA + D+D S + T+RL+I SQ G LIG +G I+++R
Sbjct: 108 AVFHAVSMIAFKL--DEDLCSAPANGGTVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 165
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 166 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPY 219
Query: 229 SPAYN-----------------YSAIRPAQ------------PFVEPT-------SADYV 252
P+ + Y A+ PA+ PF P+ A
Sbjct: 220 HPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLDPGAQTS 279
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQVA 309
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS +A
Sbjct: 280 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVSIA 336
Query: 310 LAKQRVDEYIYSQLIQQA 327
LA +Y+ + ++ A
Sbjct: 337 LA-----QYLITACLETA 349
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 269 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 324
Query: 96 VIIIS 100
+ I+
Sbjct: 325 HVTIT 329
>gi|108709930|gb|ABF97725.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 389
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 7/195 (3%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+G+ +++D +D K + +FRI++P++++G +IG++G I+K+ EE+KA IKI
Sbjct: 84 NGEVKQQDSLPVEADKKWPGWPGESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKI 143
Query: 86 ADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
D ER ++IS+KD D +S A + L ++ I D +S + +V
Sbjct: 144 LDGPPGVPERTVMISAKDEPDAPISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGPT- 202
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
RLL+ SQAG LIG G I+ +++SS + + I+ LPL A DRVV+I G+
Sbjct: 203 -RLLVPASQAGSLIGKQGATIKSIQDSSKSIVRIV--ETLPLVAL--NDDRVVEIQGEPV 257
Query: 205 AVLNALVEIGNQLRE 219
V AL I + LR+
Sbjct: 258 GVQKALESIASHLRK 272
>gi|296087899|emb|CBI35182.3| unnamed protein product [Vitis vinifera]
Length = 511
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 111/202 (54%), Gaps = 7/202 (3%)
Query: 19 PEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
PE + R +D I G + + + +FR++VP++++G +IG++G I+KI EE
Sbjct: 86 PEDSQPQQKRGRDDDSAIGGGEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEE 145
Query: 79 TKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAA 137
T+A IKI D ER +++S+K+ D+ + A + L ++ I+ D ++S +
Sbjct: 146 TRARIKILDGPPGTAERAVMVSAKEEPDSSLPPAMDGLLKVHKRIV--DGLEGDSSHMPP 203
Query: 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197
G + RLL+A SQAG LIG G ++ ++ +S + +L LP+ A + DRVV
Sbjct: 204 G--GKVSTRLLVAASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFAL--QDDRVV 259
Query: 198 QISGDVPAVLNALVEIGNQLRE 219
++ G+ V A+ I + LR+
Sbjct: 260 EVVGEPIGVHKAVELIASHLRK 281
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
AQP P+ VT +M I S +IG G++IS IR SGA + + +G +
Sbjct: 379 AQP--APSMITQVTQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTV 436
Query: 300 QFGGSAQQVALAKQRVDEYI 319
+ G+A QV A+Q + ++
Sbjct: 437 EINGTASQVQAAQQLIQNFM 456
>gi|115497150|ref|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus]
gi|119390858|sp|Q0VCU0.1|PCBP4_BOVIN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|111304931|gb|AAI20010.1| Poly(rC) binding protein 4 [Bos taurus]
gi|296474781|tpg|DAA16896.1| TPA: poly(rC)-binding protein 4 [Bos taurus]
Length = 403
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y + PA+ PF P+ S
Sbjct: 181 PYHPSLSLGTVLLSTNQGFSVQGQYGTVTPAEVTKLQQLSGHAVPFASPSMVPGLDPSTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|335299138|ref|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Sus scrofa]
Length = 403
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 152/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPTSADYV----- 252
P+ + Y A+ PA+ PF P+ +
Sbjct: 181 PYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLDPGTQ 240
Query: 253 --TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|357157425|ref|XP_003577794.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 527
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+E D K + +FR++VP +++G VIG++G I+K+ EE++A IKI D ER
Sbjct: 112 VETEDKKWPGWPGESVFRVLVPVQKVGAVIGRKGEFIKKMCEESRARIKILDGPPGVPER 171
Query: 96 VIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
++IS+KD D +VS A + L ++ I DS ++ + AG V RLL+ SQA
Sbjct: 172 AVMISAKDEPDALVSPAVDGLLRVHKRITDGLDSETDQPQRGAGPVGPT--RLLVPASQA 229
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G LIG G I+ ++++S + IL N P+ A DRVV+I G+ V A+ I
Sbjct: 230 GSLIGKQGATIKSIQDASKCALRILE-NVPPV---ALNDDRVVEIQGEPLDVHKAVELIA 285
Query: 215 NQLRE 219
+ LR+
Sbjct: 286 SHLRK 290
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG-KGEQKHRHIQFGGS 304
P + +T + + S +IG G++IS IR SGA I + G GE +++ GS
Sbjct: 395 PPGSSQITQTLQVPLSYADAVIGAAGASISYIRKHSGATISIQEGVPGEM---NLEMTGS 451
Query: 305 AQQVALAKQRVDEYI 319
A QV A+Q + ++
Sbjct: 452 ASQVQTAQQLIKNFM 466
>gi|291393785|ref|XP_002713277.1| PREDICTED: poly(rC) binding protein 4 [Oryctolagus cuniculus]
Length = 403
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+
Sbjct: 181 PYHPSLSLGTVLLSANQGFPVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPGTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|225443912|ref|XP_002278367.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
Length = 623
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 157/337 (46%), Gaps = 76/337 (22%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ P +IG+VIG+ G I+ +RE + A +++ D A +E +I ++S ++
Sbjct: 302 SRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTES 361
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D++ S A A+ + A I +DD IRLL+ GC+IG SG
Sbjct: 362 VDDLKSMAVEAVLLLQAKINDEDDDTV-------------AIRLLVPSKIIGCIIGKSGS 408
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R + A + I + ++ P CA A+ D ++++ G+V +V +ALV+I +LR++ +
Sbjct: 409 IINEIRKRTRADVRI-SKSERPKCADAN--DELIEVVGEVGSVRDALVQIVLRLRDDALK 465
Query: 224 Q-------------VISISPAYNYSAIRPAQPFVEPTSADY------------------- 251
+ S + S++ P+ P V P S D
Sbjct: 466 DRDTGHNTSAGTDSLYSGGAGLSVSSVLPSAPPVAPLSYDQRAETGSGLGLLSSSSLYGY 525
Query: 252 ---------------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAM 284
TF+M+I + VG ++G+ G+NI+ IR SGA+
Sbjct: 526 GSLSVGENAYGSMSSYSSKLYGGLPTPSTFDMVIPANAVGKVMGKGGANIANIRKISGAV 585
Query: 285 IKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
I++ K + R G+ +Q A+ + +I +
Sbjct: 586 IEISDSKSSRGDRVALISGTPEQKRTAENLIQAFIMA 622
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 122/262 (46%), Gaps = 33/262 (12%)
Query: 26 SGKRRREDGEIEGSDP--KRRAKAQD-------VLFRIIVPSRQIGKVIGKEGHRIQKIR 76
+GKR R + +G + KRR +D +++RI+ P IG VIGK G I IR
Sbjct: 4 TGKRFRSQRDQDGDNKIQKRRVNERDEKGSDELIVYRILCPDGVIGSVIGKSGKVINSIR 63
Query: 77 EETKATIKIADAIARHEERVIIISSK-------------DNDNVVSDAENALQQIAALIL 123
++T+A IK+ D ++RVI I ++ + A++AL ++ A I+
Sbjct: 64 QDTRAKIKVVDPFPGAKDRVITIYCYVKEKEEVEVDDEFNDKQPLCPAQDALLKVHAAIV 123
Query: 124 KDDDSNSEAS--KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
N+ AS ++L+ SQ+ +IG +G I++LR+ + A I I A
Sbjct: 124 -----NAVASLENSDKKKKDKEECQILVPSSQSANVIGKAGATIKRLRSKTRANIKITAK 178
Query: 182 NQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---PAYNYSAI 237
+ P + A E D V I+GD AV AL I + + PR+ I + P S I
Sbjct: 179 DSTDPSHSCAMEFDNFVLIAGDSEAVKKALFAISAIMYKFTPREEIPLDTTVPEAPPSII 238
Query: 238 RPAQPFVEPTSADYVTFEMLIS 259
P+ + P Y + + ++S
Sbjct: 239 IPSDVPIYPAGGFYPSADSIVS 260
>gi|226502036|ref|NP_001148766.1| nucleic acid binding protein [Zea mays]
gi|195621990|gb|ACG32825.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ E TKA ++I + ER++++S K++ +
Sbjct: 39 DSVFRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVSGKEDPGLE 98
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+S A +AL ++ ++ D +E ++ AA G AA RLL+ G+QA LIG G I
Sbjct: 99 LSPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCAA---RLLVPGAQAINLIGKQGATI 155
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ S+GATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 156 KAIQESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 209
>gi|449516663|ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 643
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 116/206 (56%), Gaps = 24/206 (11%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
QDV+F+I+ + +IG VIGK G ++ ++ E+ AT+ + ++ +ER+I I++ +N ++
Sbjct: 307 QDVVFKILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASENIES 366
Query: 107 VVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A+ A+ + + I K +S+S+ S V A RL++ +Q GC++G
Sbjct: 367 RYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVVA--------RLVVPSNQVGCVLGKG 418
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I ++R +G I I++ +Q+P CA+ ESD +VQISG+ V +AL + +LR+N
Sbjct: 419 GVIISEIRKVTGTNIRIISSDQVPNCAA--ESDEIVQISGEFSNVQDALYNVTGRLRDN- 475
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPT 247
+ + P Y +R P V T
Sbjct: 476 ----LFLVP---YGRVRDTAPLVRST 494
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 132/292 (45%), Gaps = 59/292 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---------- 99
V FR++ + +IG VIGK G I+++++ T I++ +A + +RV+ +
Sbjct: 58 VAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSPALTSRV 117
Query: 100 -----SSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
S + V S A+ L ++ IL + + V RLL +Q
Sbjct: 118 FLEQNSGASGEEVEASKAQEGLLKVFERIL--EVAAEIEGVEVGAEVGVVYCRLLADVAQ 175
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G +IG G+ +EK+R SG I +L ++LP CA SD +++I GDV A+ AL+ +
Sbjct: 176 VGSVIGKGGKVVEKIRKESGCRIRVLT-DKLPACAGP--SDEMIEIEGDVWAIKKALLAV 232
Query: 214 GNQLRENPPRQVISISPA----------------YNYSAIRPAQP--------------- 242
+L++ PP + ++ PA +++ P P
Sbjct: 233 SRRLQDCPPSEKRTVRPAEAVIHETLPDLHMDHILQRNSVLPILPSSSNIFASGIHSLSI 292
Query: 243 ---FVEPTSADY----VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ P + V F++L + +GG+IG+ G+ + ++NESGA + V
Sbjct: 293 DADMLPPVDTNVAQQDVVFKILCANDRIGGVIGKGGTIVRALQNESGATVSV 344
>gi|410951299|ref|XP_003982335.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Felis catus]
Length = 403
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 152/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPTSADYV----- 252
P+ + Y A+ PA+ PF P+ +
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLDPGTQ 240
Query: 253 --TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|413955216|gb|AFW87865.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ E TKA ++I + ER++++S K++ +
Sbjct: 39 DSVFRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVSGKEDPGLE 98
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+S A +AL ++ ++ D +E ++ AA G AA RLL+ G+QA LIG G I
Sbjct: 99 LSPAMDALMRVFKRVIGITDGAAEGTQAAATPGVCAA---RLLVPGAQAINLIGKQGATI 155
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ S+GATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 156 KAIQESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 209
>gi|397495989|ref|XP_003818826.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Pan paniscus]
gi|397495991|ref|XP_003818827.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan paniscus]
Length = 403
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 152/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPTSADYV----- 252
P+ + Y A+ PA+ PF P+ +
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSMVPGLDPGTQ 240
Query: 253 --TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|386780909|ref|NP_001247796.1| poly(rC)-binding protein 4 [Macaca mulatta]
gi|332216103|ref|XP_003257183.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|332216105|ref|XP_003257184.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|332216107|ref|XP_003257185.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|402859923|ref|XP_003894386.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Papio anubis]
gi|402859925|ref|XP_003894387.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Papio anubis]
gi|402859927|ref|XP_003894388.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Papio anubis]
gi|403291118|ref|XP_003936646.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403291120|ref|XP_003936647.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|355559585|gb|EHH16313.1| hypothetical protein EGK_11579 [Macaca mulatta]
gi|355746662|gb|EHH51276.1| hypothetical protein EGM_10621 [Macaca fascicularis]
gi|380788331|gb|AFE66041.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|380788333|gb|AFE66042.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|383414707|gb|AFH30567.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|384943104|gb|AFI35157.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
Length = 403
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|14670369|ref|NP_127501.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|14670373|ref|NP_127503.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|291575148|ref|NP_001167571.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|114587184|ref|XP_001170982.1| PREDICTED: poly(rC)-binding protein 4 isoform 12 [Pan troglodytes]
gi|114587188|ref|XP_001171026.1| PREDICTED: poly(rC)-binding protein 4 isoform 14 [Pan troglodytes]
gi|410037040|ref|XP_003950173.1| PREDICTED: poly(rC)-binding protein 4 [Pan troglodytes]
gi|12230429|sp|P57723.1|PCBP4_HUMAN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957167|gb|AAG09241.1|AF176330_1 alphaCP-4 [Homo sapiens]
gi|10436225|dbj|BAB14761.1| unnamed protein product [Homo sapiens]
gi|12804299|gb|AAH03008.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|13278756|gb|AAH04153.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|119585571|gb|EAW65167.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585572|gb|EAW65168.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585573|gb|EAW65169.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585576|gb|EAW65172.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585577|gb|EAW65173.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|261861404|dbj|BAI47224.1| poly(rC) binding protein 4 [synthetic construct]
gi|410227440|gb|JAA10939.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227442|gb|JAA10940.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227444|gb|JAA10941.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262892|gb|JAA19412.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262894|gb|JAA19413.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262896|gb|JAA19414.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301312|gb|JAA29256.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301314|gb|JAA29257.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350315|gb|JAA41761.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350319|gb|JAA41763.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350321|gb|JAA41764.1| poly(rC) binding protein 4 [Pan troglodytes]
Length = 403
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|296225349|ref|XP_002758447.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Callithrix
jacchus]
gi|296225353|ref|XP_002758449.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Callithrix
jacchus]
gi|297671175|ref|XP_002813714.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pongo abelii]
gi|297671177|ref|XP_002813715.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Pongo abelii]
gi|395733705|ref|XP_003776278.1| PREDICTED: poly(rC)-binding protein 4 [Pongo abelii]
Length = 403
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|297740744|emb|CBI30926.3| unnamed protein product [Vitis vinifera]
Length = 435
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 156/335 (46%), Gaps = 76/335 (22%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ P +IG+VIG+ G I+ +RE + A +++ D A +E +I ++S ++
Sbjct: 114 SRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTES 173
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D++ S A A+ + A I +DD IRLL+ GC+IG SG
Sbjct: 174 VDDLKSMAVEAVLLLQAKINDEDDDTV-------------AIRLLVPSKIIGCIIGKSGS 220
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R + A + I + ++ P CA A+ D ++++ G+V +V +ALV+I +LR++ +
Sbjct: 221 IINEIRKRTRADVRI-SKSERPKCADAN--DELIEVVGEVGSVRDALVQIVLRLRDDALK 277
Query: 224 Q-------------VISISPAYNYSAIRPAQPFVEPTSADY------------------- 251
+ S + S++ P+ P V P S D
Sbjct: 278 DRDTGHNTSAGTDSLYSGGAGLSVSSVLPSAPPVAPLSYDQRAETGSGLGLLSSSSLYGY 337
Query: 252 ---------------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAM 284
TF+M+I + VG ++G+ G+NI+ IR SGA+
Sbjct: 338 GSLSVGENAYGSMSSYSSKLYGGLPTPSTFDMVIPANAVGKVMGKGGANIANIRKISGAV 397
Query: 285 IKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
I++ K + R G+ +Q A+ + +I
Sbjct: 398 IEISDSKSSRGDRVALISGTPEQKRTAENLIQAFI 432
>gi|449274935|gb|EMC83962.1| Poly(rC)-binding protein 4 [Columba livia]
Length = 324
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 144/318 (45%), Gaps = 65/318 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ ++IG +IGK+G +++IRE++ A I I++ ER+ I+ D V
Sbjct: 23 LTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEGSC--PERITTITG-STDAVF- 78
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ IA + +D + S+ + V V T+RL+I SQ G LIG +G I ++R
Sbjct: 79 ---RAVSMIAFKLEEDLGAGSDGAAVGRSPV---TLRLVIPASQCGSLIGKAGAKIREIR 132
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP-------- 221
S+GA + + A + LP + ++R V +SG +++ + +I + E P
Sbjct: 133 ESTGAQVQV-AGDLLP-----NSTERAVTVSGVPDTIIHCVRQICAVILEVPTESPTQAW 186
Query: 222 ---PRQ-----------VISISPAYN-------------------YSAIRPAQPFVEP-- 246
P Q +IS SP + YS RP P +
Sbjct: 187 GAFPHQHGYLPPKMTLSLISWSPCTHQSPPNPAVGKHWHPIMTDAYSYWRPTTPLLTSLS 246
Query: 247 ------TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQ 300
TS+ + E L+ L+G +IGR GS IS IR SGA IK+ RH+
Sbjct: 247 LPPGLDTSSQNSSQEFLVPNDLIGCIIGRHGSKISEIRQMSGAHIKIGNQTEGSSERHVT 306
Query: 301 FGGSAQQVALAKQRVDEY 318
GS + +A+ + +
Sbjct: 307 ITGSPVSITVAQYLITAW 324
>gi|395832731|ref|XP_003789409.1| PREDICTED: poly(rC)-binding protein 4 [Otolemur garnettii]
Length = 403
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPGTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|357466759|ref|XP_003603664.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355492712|gb|AES73915.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 662
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
+ R + + FR++ PS +G +IGK G I+ +++ET + IK+ +AI E+ +IIIS
Sbjct: 304 RMRPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISG 363
Query: 102 KDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+ D+ +S + A+ ++ I + + E S +A R++++ GCL+G
Sbjct: 364 PAHPDDRISPVQEAIFRVQNRISRAMLDSKEHSMLA---------RVIVSSKHIGCLLGK 414
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++RN SGA I +L ++ P C S E D V+Q+SG + AV +AL++I +LR N
Sbjct: 415 GGSIIAEMRNLSGAHIRMLGKDKGPKCVS--EDDEVIQVSGVIEAVHDALLQITTRLRNN 472
Query: 221 PPRQVISISPAYNYSA 236
R P+ N+ +
Sbjct: 473 FFRDAF---PSANFPS 485
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 143/340 (42%), Gaps = 87/340 (25%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KRR+ G D + V+FR++ P+ +IG VIGK G I +IR ET +KI +
Sbjct: 15 KRRKPSGVFSPLD-----VSSSVVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEE 69
Query: 88 AIARHEERVIIISSK-------------DNDNVVSDAENALQQIAALILKDDDS----NS 130
+ EERVI + DND S ++ ++ +D DS +S
Sbjct: 70 PVPGCEERVITFLKESEEGSAEQGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDS 129
Query: 131 EASKVAAG------------HVAANT-----------IRLLIAGSQAGCLIGMSGQNIEK 167
++ KV + VA + +RLLI +Q GC++G G I++
Sbjct: 130 QSEKVNSNPTIMRAVMLVFERVAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKR 189
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+ SGA I IL ++P CAS +SD +VQI+G V V AL + QL EN PR S
Sbjct: 190 MSAESGAQIRILPKEEIPACAS--DSDELVQITGGVEVVRRALQSVFQQLVENSPRDHES 247
Query: 228 ISP------AYNYSAIRPAQPFVEPTSADY------------------------------ 251
+ +++Y P + A +
Sbjct: 248 LPTNLTGPSSHSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEGAILGRMRP 307
Query: 252 ----VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+TF +L VG LIG+ GS I ++ E+ + IKV
Sbjct: 308 PPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKV 347
>gi|224098894|ref|XP_002311309.1| predicted protein [Populus trichocarpa]
gi|222851129|gb|EEE88676.1| predicted protein [Populus trichocarpa]
Length = 447
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 107/188 (56%), Gaps = 14/188 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDN 106
+D ++R + P R+IG +IGK G +++R ++K+ I+I++A+ ++ERV+ I SS + N
Sbjct: 8 EDTVYRYLCPLRKIGSIIGKGGEIAKQLRADSKSNIRISEAMPGYDERVVTIFSSSEETN 67
Query: 107 VVSD-------AENALQQIAALILKDDDSNSEASKVAA----GHVAANTIRLLIAGSQAG 155
+ D A++AL + ++ +D +N+ A++ G V T+R+L+ Q G
Sbjct: 68 LFEDTGEYVCPAQDALFMVHDRVIAEDLNNAAAAEEEEEDRFGEVQQVTVRMLVPTDQIG 127
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C+IG GQ I+ +R+ + A I I LP A + +D ++ I G+ V AL ++
Sbjct: 128 CVIGKGGQVIQNIRSETRAQIRITKDEHLPPLALS--TDELLLIHGEPSVVRKALYQVAT 185
Query: 216 QLRENPPR 223
+L ENP R
Sbjct: 186 RLHENPSR 193
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 17/211 (8%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D + A A+D R++ P IG VIGK G I++IR+E++A+IK+ + A + +I I
Sbjct: 239 DQRDEASAKDFSLRLVCPIANIGGVIGKGGGIIKQIRQESRASIKVDSSGAEGNDCIIFI 298
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
S+K+ S NA L+ SE ++ +G + T RLL+ SQ GCL+G
Sbjct: 299 SAKEFFEDQSPTMNA-------ALRMQPRCSEKTEKESGD-SVITTRLLVGRSQIGCLMG 350
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++RN + A I I++ + LP A E D +VQI+G + NAL+++ +L+
Sbjct: 351 KGGAIISEMRNLTRANIRIISEDNLPKVAG--EDDEMVQITGSLEVASNALLQVILRLKA 408
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
N + A + PA P++ P S D
Sbjct: 409 N----IFGRDGA--LTTFPPALPYI-PVSLD 432
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 55/281 (19%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD-----AIARHEERVI 97
R + Q V R++VP+ QIG VIGK G IQ IR ET+A I+I +A + ++
Sbjct: 108 RFGEVQQVTVRMLVPTDQIGCVIGKGGQVIQNIRSETRAQIRITKDEHLPPLALSTDELL 167
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR---LLIAGSQA 154
+I + S AL Q+A L ++ S S+ +++ +ANT + + + +
Sbjct: 168 LIHGEP-----SVVRKALYQVATR-LHENPSRSQHLLLSS---SANTYQSGGMFVTANAG 218
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
L+G+ G N G+ P+Q ++ S R+V ++ V+ I
Sbjct: 219 APLLGLYG-------NYKGSWSSSFYPDQRDEASAKDFSLRLVCPIANIGGVIGKGGGII 271
Query: 215 NQLRENPPRQVISI-----------------------SPAYNYSAIRPAQPF----VEPT 247
Q+R+ R I + SP N +A+R QP E
Sbjct: 272 KQIRQE-SRASIKVDSSGAEGNDCIIFISAKEFFEDQSPTMN-AALR-MQPRCSEKTEKE 328
Query: 248 SADYV-TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
S D V T +L+ S +G L+G+ G+ IS +RN + A I++
Sbjct: 329 SGDSVITTRLLVGRSQIGCLMGKGGAIISEMRNLTRANIRI 369
>gi|432110248|gb|ELK34019.1| Poly(rC)-binding protein 3 [Myotis davidii]
Length = 347
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 142/298 (47%), Gaps = 42/298 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +DA
Sbjct: 59 RLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------TDAI 110
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ A ++D NS ++ A T+RL++ SQ G LIG G I+++R S+
Sbjct: 111 FKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 169
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISP- 230
GA + + A + LP + ++R V ISG A++ + +I + E+PP+ I P
Sbjct: 170 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 223
Query: 231 ------------AYN----YSAIRP-------AQPFVEPTSAD--YVTFEMLISESLVGG 265
AY Y+ P PF A T E+ I L+G
Sbjct: 224 PASTPVIFAGGQAYTIQGQYAIPHPDVSFHFVCLPFSSCLDASPPASTHELTIPNDLIGC 283
Query: 266 LIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
+IGR G+ I+ IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 284 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 341
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 45 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 95
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 96 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 139
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 140 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 177
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 54/194 (27%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 140 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 198
Query: 109 SDAENALQQIAALILKDDDSN---------SEASKVAAGHVA------------------ 141
++QI ++L+ + + AG A
Sbjct: 199 ----QCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDVSFHF 254
Query: 142 --------------ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
A+T L I GC+IG G I ++R SGA I I
Sbjct: 255 VCLPFSSCLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN------- 307
Query: 188 ASAHESDRVVQISG 201
A+ S+R + I+G
Sbjct: 308 ATEGSSERQITITG 321
>gi|198465289|ref|XP_001353580.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
gi|198150092|gb|EAL31093.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
Length = 330
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 51/313 (16%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GTSIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSN----SEASKVAAGHVAANTIRLLIAGSQ 153
VS NA+ LI K + ++A K+ + IRL++ SQ
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDAGKIGKTQIP---IRLIVPASQ 117
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 118 CGSLIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQI 171
Query: 214 GNQLRENPPRQVISISP------------------AYNYSAIRPAQPFVEPTSADYVT-- 253
+ E+ PR ++ +P N++A A + +A+
Sbjct: 172 CLVMLESCPRSTVAKNPLASLAALGLAGMNPASTGGINHTAALAALAGSQLRTANAANRA 231
Query: 254 ----FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQ 306
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+
Sbjct: 232 QQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPD 291
Query: 307 QVALAKQRVDEYI 319
VALA+ ++ I
Sbjct: 292 SVALAQYLINMRI 304
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 52/247 (21%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-D 87
++ E+ + +D + K Q + R+IVP+ Q G +IGK G +I++IR+ T +I++A +
Sbjct: 87 KKFEEWCSQFNDAGKIGKTQ-IPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASE 145
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASK------------- 134
+ ER + +S + QI ++L+ ++ A
Sbjct: 146 MLPNSTERAVTLSGS-----AEQITQCIYQICLVMLESCPRSTVAKNPLASLAALGLAGM 200
Query: 135 --VAAGHVAANTIRLLIAGSQA-----------------------GCLIGMSGQNIEKLR 169
+ G + +AGSQ GC+IG G I ++R
Sbjct: 201 NPASTGGINHTAALAALAGSQLRTANAANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIR 260
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
SGA I I + +DR + ISG+ +V AL + +R + + I
Sbjct: 261 QISGAMIRISNCEE----REGGNTDRTITISGNPDSV--ALAQYLINMRISMETAGLPI- 313
Query: 230 PAYNYSA 236
P Y+Y A
Sbjct: 314 PGYHYIA 320
>gi|115479947|ref|NP_001063567.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|113631800|dbj|BAF25481.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|215695028|dbj|BAG90219.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 398
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G +IGK G I+ ++ ET A+IKI + + EERVI+IS+ +N +
Sbjct: 24 QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEM 83
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ +S S+ + +A T RLL+ GCL+G G I
Sbjct: 84 MHSPAQDAVLRV----------HSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIA 133
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 134 EMRKITGAGIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 184
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 48/179 (26%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN----QLPLCASAHESDRVVQIS 200
R++ G +IG G I L++ +GA+I I+ PN + + SAHE+ ++
Sbjct: 28 FRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEMMHSP 87
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+A++ + +++ E+ ++ +SA VT +L+
Sbjct: 88 AQ-----DAVLRVHSRISES----------------------SMDKSSA--VTARLLVPS 118
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
+G L+G+ GS I+ +R +GA I+++G +Q+ QR DE +
Sbjct: 119 QHIGCLLGKGGSIIAEMRKITGAGIRIFGN---------------EQIPRCAQRNDELV 162
>gi|222641854|gb|EEE69986.1| hypothetical protein OsJ_29891 [Oryza sativa Japonica Group]
Length = 609
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G +IGK G I+ ++ ET A+IKI + + EERVI+IS+ +N +
Sbjct: 235 QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEM 294
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ +S S+ + +A T RLL+ GCL+G G I
Sbjct: 295 MHSPAQDAVLRV----------HSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIA 344
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 345 EMRKITGAGIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 395
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 48/179 (26%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN----QLPLCASAHESDRVVQIS 200
R++ G +IG G I L++ +GA+I I+ PN + + SAHE+ ++
Sbjct: 239 FRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEMMHSP 298
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+A++ + +++ E+ ++ +SA VT +L+
Sbjct: 299 AQ-----DAVLRVHSRISES----------------------SMDKSSA--VTARLLVPS 329
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
+G L+G+ GS I+ +R +GA I+++G +Q+ QR DE +
Sbjct: 330 QHIGCLLGKGGSIIAEMRKITGAGIRIFGN---------------EQIPRCAQRNDELV 373
>gi|218202392|gb|EEC84819.1| hypothetical protein OsI_31905 [Oryza sativa Indica Group]
Length = 617
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q+++FR+I + +G +IGK G I+ ++ ET A+IKI + + EERVI+IS+ +N +
Sbjct: 243 QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEM 302
Query: 108 V-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ S A++A+ ++ +S S+ + +A T RLL+ GCL+G G I
Sbjct: 303 MHSPAQDAVLRV----------HSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIA 352
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R +GA I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 353 EMRKITGAGIRIFGNEQIPRC--AQRNDELVQVTGSFQSIQDALLHITGRIRD 403
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 44/227 (19%)
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
+E V+ IS D V A A +++ + D++ E + G V R+L A
Sbjct: 66 DEAVLSISGPDAPAV---AVRAWERVVGHRVGGDEAAGEEEREVPGVVGC---RMLAASG 119
Query: 153 QAGCLIGMSGQNIEKLRNSSGATI-VILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
Q GC++G G+ +E++R SGA I V +QLP A+ D ++ ISG+ AV AL+
Sbjct: 120 QVGCVLGKGGKTVERMRQESGAQIRVFRNRDQLPPWAAP--VDELIHISGNFSAVRKALL 177
Query: 212 EIGNQLRENP-------------PRQVISISPAYNYSAIRPAQP---------------- 242
+ L++NP P + I P + P+ P
Sbjct: 178 LVTTCLQDNPRPDASNFPPGRFGPPGPVGIDPHSQRGYLPPSMPDYHARNYSSNMAAPGP 237
Query: 243 --FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FVE + F M+ +VG +IG+ GS I +++E+GA IK+
Sbjct: 238 RFFVE----QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKI 280
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/313 (19%), Positives = 125/313 (39%), Gaps = 90/313 (28%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIK--------------------IADAIARH 92
R++ S Q+G V+GK G ++++R+E+ A I+ I+ +
Sbjct: 113 RMLAASGQVGCVLGKGGKTVERMRQESGAQIRVFRNRDQLPPWAAPVDELIHISGNFSAV 172
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALI-----------------LKDDDSNSEASKV 135
+ ++++++ DN DA N + D + + +S +
Sbjct: 173 RKALLLVTTCLQDNPRPDASNFPPGRFGPPGPVGIDPHSQRGYLPPSMPDYHARNYSSNM 232
Query: 136 AAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN----QLPL 186
AA R++ G +IG G I L++ +GA+I I+ PN + +
Sbjct: 233 AAPGPRFFVEQEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVI 292
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEP 246
SAHE+ ++ +A++ + +++ E+ ++
Sbjct: 293 VISAHENSEMMHSPAQ-----DAVLRVHSRISES----------------------SMDK 325
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
+SA VT +L+ +G L+G+ GS I+ +R +GA I+++G +
Sbjct: 326 SSA--VTARLLVPSQHIGCLLGKGGSIIAEMRKITGAGIRIFGN---------------E 368
Query: 307 QVALAKQRVDEYI 319
Q+ QR DE +
Sbjct: 369 QIPRCAQRNDELV 381
>gi|449442959|ref|XP_004139248.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 483
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S+ K + +FR++VP++++G +IG++G I+KI EET+A IKI D ER ++
Sbjct: 74 SEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVM 133
Query: 99 ISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+S+KD D+ A + L ++ I+ + ++ + A V + RLL+A SQAG L
Sbjct: 134 VSAKDEPDSAFPPAVDGLLRVHKRIVDGLEGDNAHAPNAGSKV---STRLLVAASQAGSL 190
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G ++ ++ S + +L LP+ A + DRVV++ GD V A+ I + L
Sbjct: 191 IGKQGGTVKSIQEESNCIVRVLGSEDLPVFAL--QDDRVVEVLGDPAGVHKAVELIASHL 248
Query: 218 RE 219
R+
Sbjct: 249 RK 250
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P+ T +M I S +IG G++IS IR SGA + + +G ++ G+A
Sbjct: 357 PSIVTQTTQQMQIPLSFADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTVEMSGTA 416
Query: 306 QQVALAKQRVDEYI 319
QV A+Q + ++
Sbjct: 417 SQVQAAQQLIQNFM 430
>gi|431913482|gb|ELK15157.1| Poly(rC)-binding protein 4 [Pteropus alecto]
Length = 403
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 151/320 (47%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + ++ G+++ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCSATANGGNISRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEP-------TSAD 250
P+ + Y A+ PA+ PF P A
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPGMVPGLDPGAQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G + G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI +
Sbjct: 230 GMVPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAG 285
Query: 94 ERVIIIS 100
ER + I+
Sbjct: 286 ERHVTIT 292
>gi|242038781|ref|XP_002466785.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
gi|241920639|gb|EER93783.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
Length = 430
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 107/183 (58%), Gaps = 11/183 (6%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP++++G +IG++G I+K+ EETKA IKI D ER ++I
Sbjct: 111 DDKWPGWPGESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMI 170
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKV--AAGHVAANTIRLLIAGSQAGC 156
S+KD D +S A + L ++ I D SN E+ ++ +AG++ RLL+ SQAG
Sbjct: 171 SAKDEPDAPLSPAVDGLLRVHKRIT--DSSNGESGQLQRSAGNIGP--TRLLVPSSQAGS 226
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG G I+ +++SS + + I+ N P+ A DRVV+I G+ V A+ I +
Sbjct: 227 LIGKQGATIKSIQDSSKSVVRIVE-NVPPV---ALNDDRVVEIQGEPLGVQKAVELIASH 282
Query: 217 LRE 219
LR+
Sbjct: 283 LRK 285
>gi|426340771|ref|XP_004034301.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|426340773|ref|XP_004034302.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426340775|ref|XP_004034303.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
Length = 403
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 150/320 (46%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ P + PF P+
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPTEVTKLQQLSSHAVPFATPSVVPGLDPGTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|148672030|gb|EDL03977.1| poly(rC) binding protein 2, isoform CRA_d [Mus musculus]
Length = 316
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 150/314 (47%), Gaps = 59/314 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISPA--------------------------YNYSAIRPAQPFVE-----PTS 248
S SP +S I + P V+ S
Sbjct: 176 IPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDAS 235
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
A + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA +
Sbjct: 236 AQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASI 295
Query: 309 ALAKQRVDEYIYSQ 322
+LA+ ++ + S+
Sbjct: 296 SLAQYLINVRLSSE 309
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 219 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 278
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 279 EGSTDRQVTIT 289
>gi|26346528|dbj|BAC36915.1| unnamed protein product [Mus musculus]
Length = 403
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + +PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILGSPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ PA+ PF P+ S
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
>gi|357449597|ref|XP_003595075.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355484123|gb|AES65326.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 470
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 120/206 (58%), Gaps = 11/206 (5%)
Query: 41 PKRRAKAQ--DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
P++R D +FR+IVP ++G +IG++G I+K+ +ETKA +++ DA +R+I+
Sbjct: 59 PEQRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIIL 118
Query: 99 ISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
IS K+ + +S A +A+ +I + +++SE +K AG V +IRLL+A +QA L
Sbjct: 119 ISGKEELEAAISPAMDAVIRIFKRVSGLSETDSE-NKGPAG-VTLCSIRLLVASTQAISL 176
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I ++ SSGA++ +L+ +++ A+A E R+V + G+ VL AL + L
Sbjct: 177 IGKQGTIIRSIQESSGASVRVLSGDEVQYFATAEE--RIVDLQGEALMVLKALEAVIGHL 234
Query: 218 RENPPRQVISISPAY--NYSAIRPAQ 241
R+ SI P Y Y+A P Q
Sbjct: 235 RKFLVDH--SILPVYEKTYNASLPQQ 258
>gi|357479529|ref|XP_003610050.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355511105|gb|AES92247.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 431
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 105/172 (61%), Gaps = 9/172 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNVVS 109
+FR+IVP ++G +IG++G I+K EET A I++ DA +R+++IS K D + +S
Sbjct: 45 VFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGKEDLEAPLS 104
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A +A+ +I + L + D+N+ AA VA +IRLL+A +QA LIG G +I+
Sbjct: 105 PAMDAILRIFKRVSGLSETDNNN----TAAAGVALCSIRLLVASTQAINLIGKQGSSIKA 160
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ ++GA I +L+ ++LP A A E R++ + G+ VL AL + LR+
Sbjct: 161 IQENTGAVIRVLSGDELPSYAGADE--RIIDLQGETLKVLKALEAVVGHLRK 210
>gi|297847528|ref|XP_002891645.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297337487|gb|EFH67904.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 622
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 143/315 (45%), Gaps = 66/315 (20%)
Query: 36 IEGSDPKRRAK----AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA- 90
+E S KR A A+ V FR++ P+ + G +IGK G I+ ++ T + I++ D I
Sbjct: 1 MEFSSSKRPATTATAAESVHFRLLCPAARTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPV 60
Query: 91 RHEERVIII----SSKDNDNVVSDAENA-------------------------------- 114
EERV++I K +D+ V D+EN
Sbjct: 61 PSEERVVLIIAPSGKKKDDSNVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQMAL 120
Query: 115 LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
L+ + ++ DD ++ + + G + + R+++ G+Q L+ G+ I+++R SGA
Sbjct: 121 LRVLERIVFGDDAASVDGDGLDKGE-SESLCRMIVRGNQVDFLMSKGGKMIQRIREDSGA 179
Query: 175 TIVILAPNQLPLCASAHESDRVVQ--ISGDVPAVLNALVEIGNQLREN--PPRQ------ 224
+ I + +Q+P C A D V+Q I+G +V AL+ I N L+E+ PP
Sbjct: 180 IVRISSTDQIPPC--AFPGDVVIQMKITGKFSSVKKALLLITNCLQESGAPPTWDECPFP 237
Query: 225 VISISPAYNYSAIRPAQ------------PFVEPTSADYVTFEMLISESLVGGLIGRCGS 272
P Y+ P PF P + V+F +L VG LIG+ G+
Sbjct: 238 QPGYPPDYHSMEYHPQWDHPPNPMPEDVVPFNRPVVEEEVSFRLLCPADKVGSLIGKGGA 297
Query: 273 NISRIRNESGAMIKV 287
+ ++NESGA IKV
Sbjct: 298 VVRALQNESGASIKV 312
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 99/173 (57%), Gaps = 13/173 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++V FR++ P+ ++G +IGK G ++ ++ E+ A+IK++D EER+I+IS+++N +
Sbjct: 275 EEVSFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 334
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A++ + ++ I+ ++ AA RLL+ G L+G G I
Sbjct: 335 RHSLAQDGVMRVHNRIV----------EIGFEPSAAVVARLLVHSPYIGRLLGKGGHLIS 384
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++R ++GA+I + A +Q S H D +VQ+ G++ V +AL +I +LRE
Sbjct: 385 EMRRATGASIRVFAKDQATKYESQH--DEIVQVIGNLKTVQDALFQILCRLRE 435
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 110/288 (38%), Gaps = 89/288 (30%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-----IARHEERVIIISSKDND 105
L R+IV Q+ ++ K G IQ+IRE++ A ++I+ A + VI +
Sbjct: 149 LCRMIVRGNQVDFLMSKGGKMIQRIREDSGAIVRISSTDQIPPCAFPGDVVIQMKITGKF 208
Query: 106 NVVSDA----ENALQQIAALILKDD----------DSNSEASKVAAGH---------VAA 142
+ V A N LQ+ A D+ D +S H V
Sbjct: 209 SSVKKALLLITNCLQESGAPPTWDECPFPQPGYPPDYHSMEYHPQWDHPPNPMPEDVVPF 268
Query: 143 N--------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
N + RLL + G LIG G + L+N SGA+I + P H+S+
Sbjct: 269 NRPVVEEEVSFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPT--------HDSE 320
Query: 195 -RVVQISG-------------DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
R++ IS V V N +VEIG
Sbjct: 321 ERIIVISARENLERRHSLAQDGVMRVHNRIVEIG-------------------------- 354
Query: 241 QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
EP++A V +L+ +G L+G+ G IS +R +GA I+V+
Sbjct: 355 ---FEPSAA--VVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVF 397
>gi|149031922|gb|EDL86834.1| rCG50739, isoform CRA_c [Rattus norvegicus]
Length = 317
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 60/315 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISPA--------------------------YNYSAIRPAQPFVE------PT 247
S SP +S I + P V+
Sbjct: 176 IPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDA 235
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 236 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 295
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 296 ISLAQYLINVRLSSE 310
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 225 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 284
Query: 95 RVIIIS 100
R + I+
Sbjct: 285 RQVTIT 290
>gi|255563372|ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538165|gb|EEF39776.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 698
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 28/197 (14%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDN 106
Q+V+F+I+ P+ +G VIGK G I+ ++ ET A+I I IA +ER+I +I+S++ ++
Sbjct: 303 QEVVFKILCPNDMVGGVIGKGGTIIKALQNETGASITIGATIAESDERLITVIASENPES 362
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A+ A+ + + RL++ +Q GCL+G G I
Sbjct: 363 RYSAAQKAVVLVFS-------------------------RLVVPSNQVGCLLGKGGIIIS 397
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+R ++G +I ILA +QLP C E+++VVQISGD V +A+ + +LR+N +
Sbjct: 398 DMRKTTGTSIKILAGDQLPKCVP--ENEQVVQISGDFMNVKDAVYHVTGRLRDNLFSSAL 455
Query: 227 SISPAYNYSAIRPAQPF 243
S + + I A P+
Sbjct: 456 STPVTRSTTVITEASPY 472
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 154/329 (46%), Gaps = 59/329 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK------- 102
V FR++ + +IG +IGK G I+++++++ A I+I ++ A +RVI + ++
Sbjct: 56 VSFRLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRIEESPAESSDRVITVIAEGQIVSKV 115
Query: 103 --DNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+++ V VS A+ L ++ IL + + S+ V AG + R+L QAG +IG
Sbjct: 116 RVESEEVDVSRAQEGLIRVFERIL-EVAAESDGINVVAGGGGVVSCRMLAGSKQAGSVIG 174
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G+ +EK+R G I +L ++LP+CA +E +++I GD+ +V AL+ + L++
Sbjct: 175 KGGKVVEKIRKDCGVKIRVLT-DKLPVCAGPNE--EMIEIEGDILSVKKALIAVSRCLQD 231
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVE------------------------PTSADY---- 251
P + + + A+ P +P E P ++
Sbjct: 232 CQPVDKPRVGSSKYFEAV-PQEPLPEMRVEIAPQRNIMVPTMQNNAVSCAPVPHNFLLET 290
Query: 252 --------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHR 297
V F++L +VGG+IG+ G+ I ++NE+GA I + E R
Sbjct: 291 DRVPSLDMKLFQQEVVFKILCPNDMVGGVIGKGGTIIKALQNETGASITIGATIAESDER 350
Query: 298 HIQFGGS--AQQVALAKQRVDEYIYSQLI 324
I S + A Q+ ++S+L+
Sbjct: 351 LITVIASENPESRYSAAQKAVVLVFSRLV 379
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 231 AYNYSAIRPAQPFVE-------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
A S RP QP P +V+F +L S +GG+IG+ G+ I +++ +SGA
Sbjct: 28 ANGLSNKRPKQPPANQNAAAPLPLPPGHVSFRLLCHASRIGGIIGKSGTIIKQLQQQSGA 87
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
I++ E R I Q V +K RV+
Sbjct: 88 KIRIEESPAESSDRVITVIAEGQIV--SKVRVE 118
>gi|449463577|ref|XP_004149510.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like
[Cucumis sativus]
Length = 468
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 110/184 (59%), Gaps = 13/184 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SD K D +FR+IVP ++G +IG++G I+K+ EET+A I++ D +RV++
Sbjct: 70 SDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVL 129
Query: 99 ISSKDN-DNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
IS K+ ++ +S A +A+ ++ + L +++ ++AS +IRLL+A +QA
Sbjct: 130 ISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFC--------SIRLLVASTQAI 181
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
LIG G I+ ++ S+GA++ +L+ +++P A A E R+V++ G+ VL AL +
Sbjct: 182 NLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADE--RMVELQGESLKVLKALEGVVG 239
Query: 216 QLRE 219
LR+
Sbjct: 240 HLRK 243
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
VT M I S +IG G+NI+ IR SGA++ + +G ++ G++ QV +A
Sbjct: 343 VTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMA 402
Query: 312 KQRVDEYI 319
+Q + E +
Sbjct: 403 QQLIQEAV 410
>gi|395536911|ref|XP_003770452.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Sarcophilus
harrisii]
Length = 318
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 144/315 (45%), Gaps = 57/315 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR------ 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 224 --------------QVISI---------------------SPAYNYSAIRPAQPFVEPTS 248
Q +I +P PA P ++ S
Sbjct: 179 RPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTTPAFPGLD-AS 237
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ +
Sbjct: 238 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANI 297
Query: 309 ALAKQRVDEYIYSQL 323
+LA+ ++ + S++
Sbjct: 298 SLAQYLINARLTSEV 312
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ I+ N +A TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED------IINSMSNSTA----------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|356572245|ref|XP_003554280.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 528
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR++VP +++G +IG++G I+KI EETKA IKI D ER +++S+K+ D +
Sbjct: 126 VFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDCPIP 185
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ ++ D ++ S +AAG RLL+A +QAG LIG G I+ ++
Sbjct: 186 PAVDGLLRVHKQVINVDRDLAD-SALAAGRSVVT--RLLVADTQAGSLIGKQGSTIKSIQ 242
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ SG TI +L LP+ A D +V+I G+ V A+ I LR+
Sbjct: 243 DGSGCTIRVLGSENLPIFAL--RDDSIVEIQGESAGVHKAVELIAVHLRK 290
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 32/170 (18%)
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL-APNQLP 185
DS K G N R+L+ + G +IG G+ I+K+ + A I IL P +
Sbjct: 109 DSKGNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGI- 167
Query: 186 LCASAHESDRVVQISGD------VPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
S+R V +S +P ++ L+ + +QVI++ SA+
Sbjct: 168 -------SERAVMVSAKEEPDCPIPPAVDGLLRVH--------KQVINVDRDLADSAL-- 210
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+ V +L++++ G LIG+ GS I I++ SG I+V G
Sbjct: 211 -------AAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLG 253
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
VT M I + +IG G+NIS IR SGA I + +G ++ G++ Q+ A
Sbjct: 403 VTQHMQIPLTYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAA 462
Query: 312 KQRVDEYI 319
+Q V ++
Sbjct: 463 QQLVQNFM 470
>gi|149728835|ref|XP_001494599.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Equus
caballus]
Length = 403
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 67/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPTNGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVI 226
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180
Query: 227 SISPAYN-----------------YSAIRPAQ------------PFVEPT-------SAD 250
P+ + Y A+ A+ PF P+ A
Sbjct: 181 PYHPSLSLGTVLLSANQGFSVQGQYGAVTSAEVTKLQQLSGHAVPFASPSMVPGLDPGAQ 240
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQ 307
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVS 297
Query: 308 VALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 298 IALA-----QYLITACLETA 312
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
>gi|432092458|gb|ELK25073.1| Poly(rC)-binding protein 4 [Myotis davidii]
Length = 403
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 150/318 (47%), Gaps = 63/318 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ ER+ I+ +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGS-----TA 70
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+A+ IA + D+D S + T+RL+I SQ G LIG +G I+++R
Sbjct: 71 AVFHAVSMIAFKL--DEDLCSAPANGGTVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+ I
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPY 182
Query: 229 SPAYN-----------------YSAIRPAQ------------PFVEPT-------SADYV 252
P+ + Y + PA+ PF P+ A
Sbjct: 183 HPSLSLGTVLLSANQGFSVQSQYGGVTPAEVTKLQQLSGHAVPFGSPSMVPGLDPGAQTS 242
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQVA 309
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS +A
Sbjct: 243 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVSIA 299
Query: 310 LAKQRVDEYIYSQLIQQA 327
LA +Y+ + ++ A
Sbjct: 300 LA-----QYLITACLETA 312
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
>gi|449531912|ref|XP_004172929.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 453
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR++VP++++G +IG++G I+KI EET+A IKI D ER +++S+KD D+
Sbjct: 86 VFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVSAKDEPDSAFP 145
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I+ + ++ + A V+ RLL+A SQAG LIG G ++ ++
Sbjct: 146 PAVDGLLRVHKRIVDGLEGDNAHAPNAGSKVST---RLLVAASQAGSLIGKQGGTVKSIQ 202
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
S + +L LP+ A + DRVV++ GD V A+ I + LR+
Sbjct: 203 EESNCIVRVLGSEDLPVFAL--QDDRVVEVLGDPAGVHKAVELIASHLRK 250
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P+ T +M I S +IG G++IS IR SGA + + +G ++ G+A
Sbjct: 357 PSIVTQTTQQMQIPLSFADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTVEMSGTA 416
Query: 306 QQVALAKQRVDEYIYS 321
QV A+Q + I+S
Sbjct: 417 SQVQAAQQLIQAIIFS 432
>gi|15236094|ref|NP_194330.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|4538929|emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|7269451|emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|15810499|gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|20466386|gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|21280915|gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|332659742|gb|AEE85142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 495
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 100/175 (57%), Gaps = 13/175 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D +FR+IVP ++G +IG++G I+K+ EET+A IK+ D +R+++IS K+ +
Sbjct: 73 DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132
Query: 108 VSDAENA----LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+S A +A ++++ L DDD A V + ++RLL+A +QA LIG G
Sbjct: 133 MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFS------SVRLLVASTQAINLIGKQGS 186
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
I+ + +SGA++ IL+ + P A+ E R+V + G+ +L AL I LR
Sbjct: 187 LIKSIVENSGASVRILSEEETPFYAAQDE--RIVDLQGEALKILKALEAIVGHLR 239
>gi|61661324|gb|AAX51268.1| FLK [Arabidopsis thaliana]
gi|61661326|gb|AAX51269.1| FLK [Arabidopsis thaliana]
Length = 577
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 108/190 (56%), Gaps = 7/190 (3%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
ED + G + + + +FR++VP++++G +IG++G I+KI EET+A IKI D
Sbjct: 168 EEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPP 227
Query: 91 RHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
ER +++S K+ ++ + + + L ++ I+ D + EAS+ A + + RLL+
Sbjct: 228 GTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGEASQ--APPPSKVSTRLLV 283
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
SQAG LIG G ++ ++ +S + +L LP+ A + DRVV++ G+ +V A
Sbjct: 284 PASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL--QDDRVVEVVGEPTSVHRA 341
Query: 210 LVEIGNQLRE 219
L I + LR+
Sbjct: 342 LELIASHLRK 351
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P A VT +M I S +IG GSNIS R SGA + + +G ++ G+
Sbjct: 452 PMVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTG 511
Query: 306 QQVALAKQRVDEYI 319
QV A Q + ++
Sbjct: 512 SQVQTAVQLIQNFM 525
>gi|110224788|emb|CAL07994.1| putative nucleic acid binding protein [Platanus x acerifolia]
Length = 288
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P+ A++ R++ P+ IG VIGK G I++IR+E+ A IK+ + A ++ +I IS
Sbjct: 87 PRDSVSAKEFSLRLVCPTGNIGGVIGKGGSVIKQIRQESGAFIKVDSSAAEADDCIISIS 146
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
SK+ E+ + ++ SE S +G + T RLL+ S+ GCLIG
Sbjct: 147 SKEF------FEDPISPTIDAAVRLQPKCSEKSDRESGD-STFTTRLLVPTSRIGCLIGK 199
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R + A I IL+ LP AS E D +VQI+GD+ NAL+++ +L+ N
Sbjct: 200 GGSIISEMRKVTKANIRILSKENLPKVAS--EDDEMVQITGDLDVARNALIQVTTRLKTN 257
>gi|15229321|ref|NP_187112.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|6175183|gb|AAF04909.1|AC011437_24 putative RNA-binding protein [Arabidopsis thaliana]
gi|17979249|gb|AAL49941.1| AT3g04610/F7O18_9 [Arabidopsis thaliana]
gi|332640585|gb|AEE74106.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 577
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 108/190 (56%), Gaps = 7/190 (3%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
ED + G + + + +FR++VP++++G +IG++G I+KI EET+A IKI D
Sbjct: 168 EEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPP 227
Query: 91 RHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
ER +++S K+ ++ + + + L ++ I+ D + EAS+ A + + RLL+
Sbjct: 228 GTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGEASQ--APPPSKVSTRLLV 283
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
SQAG LIG G ++ ++ +S + +L LP+ A + DRVV++ G+ +V A
Sbjct: 284 PASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL--QDDRVVEVVGEPTSVHRA 341
Query: 210 LVEIGNQLRE 219
L I + LR+
Sbjct: 342 LELIASHLRK 351
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P A VT +M I S +IG GSNIS R SGA + + +G ++ G+
Sbjct: 452 PMVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTG 511
Query: 306 QQVALAKQRVDEYI 319
QV A Q + ++
Sbjct: 512 SQVQTAVQLIQNFM 525
>gi|297794027|ref|XP_002864898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310733|gb|EFH41157.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + +A EER+I +++ +N
Sbjct: 458 QDVVFKILCSTENAGGVIGSGGKVVRMLHSETGAFINVGNTLADCEERLIAVTAPENPEC 517
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S + Q+ L+ S + G + T RL++ SQ GC++G G + +
Sbjct: 518 QS---SPAQKAIMLLFSRLFELSTKKILDNGPRTSITARLVVPTSQIGCVLGKGGVIVSE 574
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R ++GATI IL Q P C S E+D+V+QI+G+ P V A+ I ++LR++
Sbjct: 575 MRKTTGATIQILKVEQNPKCVS--ENDQVIQITGEFPNVREAIFHITSRLRDS 625
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + +RVI II+ D+ + V
Sbjct: 47 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPFGSPDRVITIIAQADSKSRVKL 106
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 107 GVNNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVV------------CRLLT 154
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V+I G+ AV A
Sbjct: 155 ESSHAGAVIGKGGQMVGSIRKETGCKISIRTEN-LPICADT--DDEMVEIEGNAIAVKKA 211
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 212 LVSISRCLQ 220
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
V GH A RLL S G +IG SG I++L+ S+GA I + P P + D
Sbjct: 40 VPVGHAA---FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEP---PFGSP----D 89
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSA-IRPAQPFVEPTSADYVT 253
RV+ I + + + N ++ + + A I+ + +D V
Sbjct: 90 RVITIIAQADSKSRVKLGVNNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVV 149
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+L S G +IG+ G + IR E+G I +
Sbjct: 150 CRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 183
>gi|356504987|ref|XP_003521274.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 529
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR++VP +++G +IG++G I+KI EETKA IKI D ER +++S+K+ D +
Sbjct: 127 VFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIP 186
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ ++ + D + S +AAG RLL+A +QAG LIG G I+ ++
Sbjct: 187 PAIDGLLRVHKQVI-NVDRDLVDSALAAGRSVVT--RLLVADTQAGSLIGKQGSTIKSIQ 243
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ SG TI +L LP+ A D +V+I G+ V A+ I LR+
Sbjct: 244 DGSGCTIRVLGSENLPVFAL--RDDSIVEIQGESAGVHKAVELIAVHLRK 291
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+V D ++ L+Q + + DS K G N R+L+ + G +IG G+ I
Sbjct: 94 DVPEDFDSLLKQESEI-----DSKGNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFI 148
Query: 166 EKLRNSSGATIVIL-APNQLP----LCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+K+ + A I IL P + + ++ E DR +P ++ L+ +
Sbjct: 149 KKITEETKARIKILDGPPGISERAVMVSAKEEPDR------PIPPAIDGLLRVH------ 196
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
+QVI++ SA+ + V +L++++ G LIG+ GS I I++
Sbjct: 197 --KQVINVDRDLVDSAL---------AAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDG 245
Query: 281 SGAMIKVYG 289
SG I+V G
Sbjct: 246 SGCTIRVLG 254
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
VT M I + +IG G+NIS IR SGA I + +G ++ G++ Q+ A
Sbjct: 403 VTQHMQIPLTYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAA 462
Query: 312 KQRVDEYI 319
+Q V ++
Sbjct: 463 QQLVQNFM 470
>gi|114684793|ref|XP_001157578.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan troglodytes]
gi|397506694|ref|XP_003823856.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan paniscus]
gi|426393343|ref|XP_004062984.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 351
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 145/315 (46%), Gaps = 56/315 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+ I
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 229 SP-------------AYN----YSAIRPAQ------------PF-----VEP------TS 248
P AY Y+ P Q PF P S
Sbjct: 211 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 270
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ +
Sbjct: 271 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANI 330
Query: 309 ALAKQRVDEYIYSQL 323
+LA+ ++ + S++
Sbjct: 331 SLAQYLINARLTSEV 345
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 85
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 86 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
>gi|193248243|dbj|BAC04327.2| unnamed protein product [Homo sapiens]
Length = 319
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 145/315 (46%), Gaps = 56/315 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+ I
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 229 SP-------------AYN----YSAIRPAQ------------PF-----VEP------TS 248
P AY Y+ P Q PF P S
Sbjct: 179 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 238
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ +
Sbjct: 239 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANI 298
Query: 309 ALAKQRVDEYIYSQL 323
+LA+ ++ + S++
Sbjct: 299 SLAQYLINARLTSEV 313
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|58865460|ref|NP_001011945.1| poly(rC)-binding protein 3 [Rattus norvegicus]
gi|50927011|gb|AAH79196.1| Poly(rC) binding protein 3 [Rattus norvegicus]
Length = 319
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 145/315 (46%), Gaps = 56/315 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+ I
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 229 SP-------------AYN----YSAIRPAQ------------PF-----VEP------TS 248
P AY Y+ P Q PF P S
Sbjct: 179 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 238
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ +
Sbjct: 239 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANI 298
Query: 309 ALAKQRVDEYIYSQL 323
+LA+ ++ + S++
Sbjct: 299 SLAQYLINARLTSEV 313
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|219888687|gb|ACL54718.1| unknown [Zea mays]
Length = 448
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR++VP ++G +IG++G I+++ EETKA ++I + ER++++S K D D
Sbjct: 45 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPDLE 104
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAG-HVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ A +AL ++ + D +E ++ AA V A RLL+ G+QA LIG G I+
Sbjct: 105 LPPAMDALMRVFKRVTGITDGAAEGTQAAATPDVCAA--RLLVPGAQAINLIGKQGATIK 162
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ S+ ATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 163 AIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 215
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 45/295 (15%)
Query: 33 DGEIEGSDPKRRAKAQDVLF-RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
DG EG+ + A DV R++VP Q +IGK+G I+ I+E T ATI++ ++
Sbjct: 124 DGAAEGT---QAAATPDVCAARLLVPGAQAINLIGKQGATIKAIQESTSATIRVI-SVDE 179
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
HE + + + D E L+ + A+ +N +R +
Sbjct: 180 HERPFYVTDDERIVEIQGDTEKVLKALQAV--------------------SNHLRKFLVD 219
Query: 152 SQAGCLIGMSGQNIEKLRNSSGAT------IVILAPNQLPLCASAHESDRVVQISGDVPA 205
L + + + RN G + I NQLP D ++Q+ D P
Sbjct: 220 HSVLPLFEKTNTTVSQDRNGDGWSDMSRPSIGSAQVNQLPSVLD----DYILQVKRD-PL 274
Query: 206 VLNALVEIGNQLRENPPRQVISI---SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESL 262
L E + + N R +S+ PA S +RP+ + +T M I +
Sbjct: 275 YL----ERESLVDHNIHRSGVSLYGRDPAL--STLRPSAVHGAGSLLTQITQTMQIPLTY 328
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDE 317
+IG G+NI+ IR SGA++ + G ++ G++ QV A+Q + +
Sbjct: 329 AEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQD 383
>gi|356562072|ref|XP_003549298.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 105/172 (61%), Gaps = 10/172 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-VS 109
+FR+IVP ++G +IG++G I+K EETKA I++ D +R+++IS K+ +S
Sbjct: 47 VFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRIVLISGKEEPEAPLS 106
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A NA+ ++ + + D+ ++AS VA ++RLL+A +QA LIG G I+
Sbjct: 107 PAMNAVIRVFKRVSGFSEIDAENKASAVAFC-----SVRLLVASTQAINLIGKQGSLIKS 161
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ ++GA++ +L+ +++P A+A E R+V++ G+ VL AL + LR+
Sbjct: 162 IQENTGASVRVLSGDEVPFYAAADE--RIVELQGEAMKVLKALEAVVGHLRK 211
>gi|356505941|ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-NVVS 109
+FR++VP++++G +IG++G I+KI EET+A +KI D +R ++IS+K+ + V
Sbjct: 45 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQRAVMISAKEEPGSSVP 104
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L +I I+ D S+ + +G + +LL+ SQAG LIG G ++ ++
Sbjct: 105 PAVDGLLRIHKRII--DGLESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 162
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S + +L LP+ A + DRVV++ GD V AL I + LR+
Sbjct: 163 EASNCIVRVLGAEDLPIFAL--QDDRVVEVVGDPAGVHKALELIASHLRK 210
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P+ +T +M I S +IG G++IS IR SGA + + +G ++ G+A
Sbjct: 313 PSIVTQITQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTA 372
Query: 306 QQVALAKQRVDEYI 319
QV A+Q + ++
Sbjct: 373 SQVQTAQQLIQNFM 386
>gi|414867775|tpg|DAA46332.1| TPA: nucleic acid binding protein [Zea mays]
Length = 448
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR++VP ++G +IG++G I+++ EETKA ++I + ER++++S K D D
Sbjct: 45 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPDLE 104
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAG-HVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ A +AL ++ + D +E ++ AA V A RLL+ G+QA LIG G I+
Sbjct: 105 LPPAMDALMRVFKRVTGITDGAAEGTQAAATPDVCAA--RLLVPGAQAINLIGKQGATIK 162
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ S+ ATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 163 AIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 215
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 45/295 (15%)
Query: 33 DGEIEGSDPKRRAKAQDVLF-RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
DG EG+ + A DV R++VP Q +IGK+G I+ I+E T ATI++ ++
Sbjct: 124 DGAAEGT---QAAATPDVCAARLLVPGAQAINLIGKQGATIKAIQESTSATIRVI-SVDE 179
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
HE + + + D E L+ + A+ +N +R +
Sbjct: 180 HERPFYVTDDERIVEIQGDTEKVLKALQAV--------------------SNHLRKFLVD 219
Query: 152 SQAGCLIGMSGQNIEKLRNSSGAT------IVILAPNQLPLCASAHESDRVVQISGDVPA 205
L + + + RN G + I NQLP D ++Q+ D P
Sbjct: 220 HSVLPLFEKTNTTVSQDRNGDGWSDMSRPSIGSAQVNQLPSVLD----DYILQVKRD-PL 274
Query: 206 VLNALVEIGNQLRENPPRQVISI---SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESL 262
L E + + N R +S+ PA S +RP+ + +T M I +
Sbjct: 275 YL----ERESLVDHNIHRSGVSLYGRDPAL--STLRPSAVHGAGSLLTQITQTMQIPLTY 328
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDE 317
+IG G+NI+ IR SGA++ + G ++ G++ QV A+Q + +
Sbjct: 329 AEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQD 383
>gi|147794489|emb|CAN67081.1| hypothetical protein VITISV_007074 [Vitis vinifera]
Length = 534
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
V FR++VP++++G +IG++G I+KI EET+A IKI D ER +++S+K+ D+ +
Sbjct: 128 VFFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVSAKEEPDSSL 187
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A + L ++ I+ D ++S + G + RLL+A SQAG LIG G ++ +
Sbjct: 188 PPAMDGLLKVHKRIV--DGLEGDSSHMPPG--GKVSTRLLVAASQAGSLIGKQGGTVKSI 243
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ +S + +L LP+ A + DRVV++ G+ V A+ I + LR+
Sbjct: 244 QEASNCIVRVLGAEDLPIFAL--QDDRVVEVVGEPIGVHKAVELIASHLRK 292
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
AQP P+ VT +M I S +IG G++IS IR SGA + + +G +
Sbjct: 390 AQP--APSMITQVTQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTV 447
Query: 300 QFGGSAQQVALAKQRV 315
+ G+A QV A+Q +
Sbjct: 448 EINGTASQVQAAQQLI 463
>gi|186478468|ref|NP_001117282.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|5080792|gb|AAD39302.1|AC007576_25 Unknown protein [Arabidopsis thaliana]
gi|332190995|gb|AEE29116.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 479
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 21/220 (9%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAK-----------AQDVLFRIIVPSRQIGKVIGKEGHRI 72
++ GKR E G+ +R ++D ++R + P ++ G +IGK G
Sbjct: 7 NIHGKRSNLQSEFTGNGGSKRRNLHDETDQNVIASEDTVYRYLCPVKKTGSIIGKGGEIA 66
Query: 73 QKIREETKATIKIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILK 124
++IR ETK+ ++I +A+ EERV+ + S D+ +V A +AL ++ +++
Sbjct: 67 KQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFGDDGELVCPALDALFKVHDMVVA 126
Query: 125 DDDSNSEASKVAA-GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
D D + G T+R+L+ Q GC+IG GQ I+ LRN + A I ++ +
Sbjct: 127 DADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIK-DH 185
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
LP CA D ++ I G+ V AL ++ + L +NP R
Sbjct: 186 LPACALTLSHDELLLIIGEPLVVREALYQVASLLHDNPSR 225
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A++ I P+ +G VIGK G I +IR+ET ATI++ + ++ +I ISSK+
Sbjct: 264 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEF 323
Query: 105 DNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A NA LQQ SE A +A +T RLL++ SQ GCLIG
Sbjct: 324 YEDQSPAVNAAIRLQQRC----------SEKVGKDANDLAIST-RLLVSSSQIGCLIGKG 372
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R+ + A I IL +P A E + +VQI+G A + AL ++ +LR N
Sbjct: 373 GAVISEMRSVTRANIRILQKEDVP--KIAREDEEMVQITGSPDAAMKALTQVILRLRAN 429
>gi|403297205|ref|XP_003939469.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 351
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 145/315 (46%), Gaps = 56/315 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+ I
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 229 SP-------------AYN----YSAIRPAQ------------PF-----VEP------TS 248
P AY Y+ P Q PF P S
Sbjct: 211 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 270
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ +
Sbjct: 271 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANI 330
Query: 309 ALAKQRVDEYIYSQL 323
+LA+ ++ + S++
Sbjct: 331 SLAQYLINARLTSEV 345
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
>gi|410897345|ref|XP_003962159.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 321
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 56/315 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ + +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDTIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ----- 224
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPY 180
Query: 225 ---------VISISPAYN----YSAIRPAQ------------PFVE-----------PTS 248
+ S AY Y+ P Q PF S
Sbjct: 181 RPKPASTPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQATPAFPGLDAS 240
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ +
Sbjct: 241 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANI 300
Query: 309 ALAKQRVDEYIYSQL 323
+LA+ ++ + S++
Sbjct: 301 SLAQYLINARLTSEV 315
>gi|255562910|ref|XP_002522460.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538345|gb|EEF39952.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 559
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 27/223 (12%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKA-------QDVLFRIIVPSRQIGKVIGKEGHRIQKIR 76
D G +RR +G D + + +D ++R + P R+IG +IG+ G +++R
Sbjct: 17 DYGGGKRRNPTADDGEDSDHQQQQQQHTITNEDTVYRYLCPLRKIGSIIGRGGEIAKQLR 76
Query: 77 EETKATIKIADAIARHEERVIIISSK--------DNDNVVSDAENALQQIAALILKDDDS 128
E+K+ I+I++A+A EER++ I S D+ V A++AL + I+ +D +
Sbjct: 77 SESKSNIRISEAMAGFEERIVTIYSNSEESNLFGDSGEFVCPAQDALFMVHDRIIAEDLN 136
Query: 129 NSEASKVAAGHVAAN----------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
NS + T+R+L+ Q GC+IG GQ I+ +R+ +GA I I
Sbjct: 137 NSNNNNEEEDDEEEEEFGESKEQVVTVRMLVPADQIGCVIGKGGQVIQSIRSETGAQIRI 196
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
L LP A + SD ++ I G+ V AL ++ +L ENP
Sbjct: 197 LKDEHLPPLALS--SDELLLIIGEPAVVRKALYQVATRLHENP 237
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 17/214 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SD + +++ R++ P IG VIGK G I++IR+E++A+IK+ + A ++ +I
Sbjct: 286 SDQRDEGSSKEFSLRLVCPIGNIGGVIGKGGGIIKQIRQESRASIKVDSSAAEGDDCIIF 345
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ D L AAL L+ SE ++ +G + T RLL+ SQ GCL+
Sbjct: 346 ISAKE---FFEDQSATL--TAALRLQ--PRCSEKTERDSGD-SVITTRLLVPRSQIGCLM 397
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I ++RN + A+I ILA + LP AS E D +VQI+G NAL+ + +L+
Sbjct: 398 GKGGAIISEMRNVTRASIRILAEDNLPKVAS--EDDEMVQITGSHDVASNALLHVVLRLK 455
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV 252
N + ++ +A PA P++ P S D +
Sbjct: 456 ANLFGRDGAL------TAFPPALPYI-PVSMDML 482
>gi|348511523|ref|XP_003443293.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 321
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 56/315 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ + +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDTIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ----- 224
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVRQICVVMLESPPKGATIPY 180
Query: 225 ---------VISISPAYN----YSAIRPAQ------------PFVE-----------PTS 248
+ S AY Y+ P Q PF S
Sbjct: 181 RPKPTSTPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGLDAS 240
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ +
Sbjct: 241 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANI 300
Query: 309 ALAKQRVDEYIYSQL 323
+LA+ ++ + S++
Sbjct: 301 SLAQYLINARLTSEV 315
>gi|291237680|ref|XP_002738761.1| PREDICTED: poly(rC) binding protein 2-like [Saccoglossus
kowalevskii]
Length = 409
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 144/325 (44%), Gaps = 69/325 (21%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A + R+I+ +++G +IGK G I+K RE++ A I I+D + ER++ ++
Sbjct: 16 AVTLTIRLIMQGKEVGSIIGKGGETIKKFREQSGARINISD--SSCAERIVTVTGS---- 69
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
NA + I +D +N S V T+RL++ SQ G LIG G I+
Sbjct: 70 -TEAINNAFEMITKKFEEDVSNNMANSSTPKPPV---TLRLVVPASQCGSLIGKGGSKIK 125
Query: 167 KLRNSSGATIVILAPNQLPLCASAHES-DRVVQISGDVPAVLNALVEIGNQLRENPPR-- 223
++R ++GA++ + A + L H+S +R V ISG A+ + +I + E+PP+
Sbjct: 126 EIRENTGASVQV-AGDML------HQSTERAVTISGTPEAITKCVYQICCVMLESPPKGA 178
Query: 224 ---------QVISISPAY----NYSAIRP-----------AQPFV------EPTSADY-- 251
+ PAY NY+ P PF+ PT+ +
Sbjct: 179 TIPYRPKPTNATATHPAYAVHGNYAVPYPDFMKLHHLTMQHTPFLPGQTPFTPTALNMGY 238
Query: 252 -----------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ 294
T+E++I L+G +IGR G+ I+ IR SGA IK+ +
Sbjct: 239 GVANAASAGTQVATTGQQTYEIMIPNDLIGCVIGRGGAKINEIRQISGATIKIANSQEGS 298
Query: 295 KHRHIQFGGSAQQVALAKQRVDEYI 319
R + G+ + + LA ++ +
Sbjct: 299 NDRSVTISGTVEAINLAHFLINSSL 323
>gi|356573119|ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Glycine max]
Length = 446
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 98/170 (57%), Gaps = 5/170 (2%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-NVVS 109
+FR++VP++++G +IG++G I+KI EET+A +KI D +R ++IS+K+ + V
Sbjct: 48 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQRAVMISAKEEPGSSVP 107
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I+ D S+ + +G + +LL+ SQAG LIG G ++ ++
Sbjct: 108 PAVDGLLRVHKRII--DGLESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 165
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S + +L LP+ A + DRVV++ GD V AL I + LR+
Sbjct: 166 EASNCIVRVLGAEDLPIFAL--QDDRVVEVVGDPTGVHKALELIASHLRK 213
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P+ +T +M I S +IG G++IS IR SGA + + +G ++ G+A
Sbjct: 316 PSIVTQITQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTA 375
Query: 306 QQVALAKQRVDEYI 319
QV A+Q + ++
Sbjct: 376 SQVQTAQQLIQNFM 389
>gi|356525090|ref|XP_003531160.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 625
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 159/343 (46%), Gaps = 86/343 (25%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ PS +IG+VIGK G I+ +R+ + A I++ D+ A +E +III++ ++
Sbjct: 302 SRSEELIIRMLCPSDKIGRVIGKGGSTIKSMRQASGAHIEVDDSKANFDECLIIITTTES 361
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
++ S A A+ + I +DD+ +IRLL+ GC+IG SG
Sbjct: 362 PSDLKSMAVEAVLLMQGKINDEDDTTV-------------SIRLLVPSKVIGCIIGKSGS 408
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE---- 219
I ++R + A + I ++ P CA A+ D +V++ G V V +AL++I +LR+
Sbjct: 409 IINEIRKRTKADVRISKGDK-PKCADAN--DELVEVGGSVDCVRDALIQIILRLRDDVLR 465
Query: 220 ------NP----------------PRQVISISP-----AYNYSA--------IRPAQPF- 243
NP P + S+ P Y++ A + P+ P+
Sbjct: 466 ERDTGHNPSIGAESLYPGSAGLSLPSMMHSVPPVAAPMVYDHRAESGAGLGMLSPSSPYG 525
Query: 244 -------------------------VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
+ P S T +MLI + VG ++G+ G+NI+ IR
Sbjct: 526 GYGSLPMGDNGYGSMSSYATKLYGGLPPPS----TLDMLIPANAVGKVLGKGGANIANIR 581
Query: 279 NESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
SGA I++ K + R G+ +Q A+ + +I +
Sbjct: 582 KISGASIEISDNKSARGDRIALISGTPEQKRAAENLIQAFIMA 624
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 139/331 (41%), Gaps = 81/331 (24%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KRR D + G+D + +++RI+ P IG VIGK G I IR+ET+A +K+ D
Sbjct: 22 KRRMTDRDDRGND-------ELIVYRILCPDEVIGSVIGKNGKVINSIRQETRAKVKVVD 74
Query: 88 AIARHEERVIIISS--KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA--- 142
++RVI I K+ ++V D E A ++ + D+ + A +AA
Sbjct: 75 PFPGSKDRVITIYCYVKEKEDVEIDDEFAGKE---PLCAAQDALLKVHVAIANSIAAIGD 131
Query: 143 --------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL-PLCASAHES 193
+ ++L+ SQ+ +IG +G I+KLR+ + A I + A + P + A E
Sbjct: 132 SEKKRKDRDECQILVPSSQSANIIGKAGATIKKLRSKTRANIKVTAKDAADPTHSCAMEF 191
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS----------------PAYNYSAI 237
D V I+G+ AV AL + + + + PR+ IS+ P Y +
Sbjct: 192 DNFVVITGESEAVKRALFAVSSIMYKFGPREDISLDTAVPEAPPSIIIPSDVPVYPPGGL 251
Query: 238 RPA-QPFVEP----------------------------------------TSADYVTFEM 256
PA P V P + ++ + M
Sbjct: 252 YPASDPIVTPRAVPQIIGATNVPDLQGYADAGNSWPMYSSALPVVSGVGASRSEELIIRM 311
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKV 287
L +G +IG+ GS I +R SGA I+V
Sbjct: 312 LCPSDKIGRVIGKGGSTIKSMRQASGAHIEV 342
>gi|242055819|ref|XP_002457055.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
gi|241929030|gb|EES02175.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
Length = 716
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 96/170 (56%), Gaps = 12/170 (7%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSD 110
FR++ P ++G +IGK G+ ++ I+++T IK+ D + + E+R+I IS + + +S
Sbjct: 390 FRMLCPQDKVGSIIGKGGNIVKTIQKDTGCEIKVLDTVPKSEDRIISISGPAHPSDGISP 449
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+NA+ + I+ E + RL+++ +Q GC++G G I ++R
Sbjct: 450 AQNAILHVQRKIMLPTSDKKEGPAIC---------RLIVSANQVGCVLGKGGSIIAEMRK 500
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
SGA I++L+ +++P H D VVQISG A+ AL++I +LR +
Sbjct: 501 LSGAFIIVLSKDKIPRGVPEH--DEVVQISGSCEAIQEALMQITARLRNH 548
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 43/270 (15%)
Query: 75 IREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASK 134
IREE + K D + + V ++ + + V+ A A+ + I D+N +
Sbjct: 178 IREEKDHSEKEHDKEEKDDPFVAKVAESEPERVIPSALKAISLVFDRIFAAGDNNETGNA 237
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
AA ++RLL+ SQAG L+G G I+++ +G I +L N LP CA + D
Sbjct: 238 SAAS--TPVSLRLLVLYSQAGWLLGKGGSVIKQMSADNGCEIRVLRDN-LPSCALLN--D 292
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA----------YNYSAIRPAQ--- 241
++ QI+G++ +V L + L +PP++ ++S +N S P+
Sbjct: 293 KLCQITGEIDSVRKGLNAVSELLLAHPPKETDAVSGVHSSGSSSRSLFNQSDGLPSGMQS 352
Query: 242 ----PFVEPTSA---------------------DYVTFEMLISESLVGGLIGRCGSNISR 276
P P+ A + ++F ML + VG +IG+ G+ +
Sbjct: 353 NFHIPLQGPSQANGPFDIIDLQPPIHGHASVPIESLSFRMLCPQDKVGSIIGKGGNIVKT 412
Query: 277 IRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
I+ ++G IKV + + R I G A
Sbjct: 413 IQKDTGCEIKVLDTVPKSEDRIISISGPAH 442
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
FRI+ P+ + G VIGK G I KIREET+ I++ A +ERVI I++ D D S
Sbjct: 46 FFRILCPASKSGNVIGKGGAIIAKIREETRMRIRVDRAAPGCDERVIFITAVDKDEEAS 104
>gi|356536806|ref|XP_003536925.1| PREDICTED: poly(rC)-binding protein 1-like [Glycine max]
Length = 561
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 110/196 (56%), Gaps = 7/196 (3%)
Query: 26 SGKRRREDGEIEGSDPKRR-AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
S ++R + +++G + K+ + +FR++VP +++G +IG++G I+KI E+TKA IK
Sbjct: 137 SEEKRGPEEDLKGGEVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEDTKARIK 196
Query: 85 IADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
I D ER +++S+K+ D + A + L ++ ++ D +++ A+G V
Sbjct: 197 ILDGPPGTSERAVMVSAKEEPDCSIPPAVDGLLRVHKQVVNVDPHPADS---ASGAVRPV 253
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
RLL+A +QAG LIG G I+ ++++G I IL LP+ A D +V+I G+
Sbjct: 254 VTRLLVADTQAGSLIGKQGSTIKSFQDATGCNIRILGSEHLPVFAL--RDDSIVEIQGES 311
Query: 204 PAVLNALVEIGNQLRE 219
V A+ + LR+
Sbjct: 312 SGVHKAVELVAIHLRK 327
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
VT M I S +IG G+NIS IR SGA I + +G ++ G+A Q+ A
Sbjct: 437 VTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAA 496
Query: 312 KQRVDEYI 319
+Q V ++
Sbjct: 497 QQLVQNFM 504
>gi|291414465|ref|XP_002723480.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 319
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 142/316 (44%), Gaps = 58/316 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + A + K ++D S S A T+RL++ SQ G LIG G I+++
Sbjct: 66 DA--IFKAFAMIAYKFEEDIISSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR----- 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 124 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIP 177
Query: 224 ---------------QVISI---------------------SPAYNYSAIRPAQPFVEPT 247
Q +I +P PA P
Sbjct: 178 YRPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPAGLDA 237
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
S T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+
Sbjct: 238 SPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPAN 297
Query: 308 VALAKQRVDEYIYSQL 323
++LA+ ++ + S++
Sbjct: 298 ISLAQYLINARLTSEV 313
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ IS N A TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED------IISSMSNSPA----------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|357145086|ref|XP_003573519.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 632
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 156/337 (46%), Gaps = 81/337 (24%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD-NDNV 107
D+L R++ P +IG VIGK G I+ IR+E+ A I + DA EE +I ++S + D+V
Sbjct: 312 DLLLRVVCPGDKIGLVIGKGGMTIKSIRKESGANIDVDDAKNDREESIITVTSTEATDDV 371
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S A A+ L+L+ +K+ G IRLL+ G+ GCLIG G +
Sbjct: 372 KSAAVEAV-----LLLQ--------AKINDGIEDRMHIRLLVPGNVIGCLIGKGGSIVND 418
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN------- 220
+RN S A I+ ++ P AS+ SD +V++ G+V + +ALV+I +LRE+
Sbjct: 419 MRNKSKA-IIHISKGSKPRRASS--SDELVEVFGEVDKLRDALVQIVLRLREDVLKDSVE 475
Query: 221 ------PPRQVISIS-PAY--NYS--AIRPAQPFVEPTSAD------------------- 250
++ I+I+ P Y N+S A+ P+ V P S D
Sbjct: 476 RQNSDKDGKRTIAITEPMYSSNFSMPALLPSTRQVSPLSYDQRGEVERGLDVYPRSSSYR 535
Query: 251 ----------------YVT---------FEMLISESLVGGLIGRCGSNISRIRNESGAMI 285
Y + EM+I S + +IG+ G+N+ IR SGA I
Sbjct: 536 YSSLQAVDDGYGAHSSYTSKSYGGRRPDIEMIIPASGLSKVIGKRGTNLDNIRKISGADI 595
Query: 286 KVYGGKGEQKHRHI-QFGGSAQQVALAKQRVDEYIYS 321
++ K +H H+ G+ +Q A+ + +I S
Sbjct: 596 EIIESKS-SRHDHVAHISGTPEQRQSAENLIRAFIMS 631
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 122/266 (45%), Gaps = 51/266 (19%)
Query: 22 RHDVSGKR--RREDGEIEGSDPKRRAKAQD---------VLFRIIVPSRQIGKVIGKEGH 70
RH SGKR + D + EG D KRR V++RI+ P + IG VIGK G
Sbjct: 2 RH--SGKRTSQHRDHDREGRDEKRRPAVHTQENSSNDELVVYRILCPDKVIGSVIGKNGK 59
Query: 71 RIQKIREETKATIKIADAIARHEERVIIISSKDND----------------NVVSDAENA 114
I IR++T A +K+ D ++RVI++ + V A+NA
Sbjct: 60 VINSIRQQTNAKVKVVDPYPGADKRVILVYCHVHHRDLTHRDIDVDDDDDREPVCAAQNA 119
Query: 115 LQQ-----IAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
L + + AL + D + EA+ +L+ SQA +IG SG I++LR
Sbjct: 120 LLKVHDAIVEALAINSDSDDEEAN-------------ILVPASQAASVIGKSGSVIKRLR 166
Query: 170 NSSGATIVILAPNQLPLCAS-AHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
+ S ++I + + + S A D VQI+GD AV AL + + ++P +++I +
Sbjct: 167 SISKSSIKVRPKDPSEVTHSCAMSFDNFVQITGDARAVKKALFAVSAIIYKSPSKEIIPL 226
Query: 229 SPAYNY---SAIRPAQPFVEPTSADY 251
+ S I P++ V P S Y
Sbjct: 227 ETSVQELPPSIIIPSELPVYPASNFY 252
>gi|297803502|ref|XP_002869635.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
gi|297315471|gb|EFH45894.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 100/176 (56%), Gaps = 13/176 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D +FR+IVP ++G +IG++G I+K+ EET+A IK+ D +R+++IS K+ +
Sbjct: 73 DCVFRMIVPVSKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132
Query: 108 VSDAENA----LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+S A +A ++++ L DDD A A ++RLL+A +QA LIG G
Sbjct: 133 MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGS------AFCSVRLLVASTQAINLIGKQGS 186
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
I+ + +SGA++ IL+ + P A+ E R+V + G+ +L AL I LR+
Sbjct: 187 LIKSIVENSGASVRILSEEETPFYAAQDE--RIVDLQGEALKILKALEAIVGHLRK 240
>gi|432931637|ref|XP_004081712.1| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Oryzias
latipes]
Length = 321
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 145/315 (46%), Gaps = 56/315 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ + +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDTIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ----- 224
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPY 180
Query: 225 ---------VISISPAYN----YSAIRPAQ---------------PFVEPTSA------- 249
+ S AY Y+ P Q P + T A
Sbjct: 181 RPKPASTPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGLDAA 240
Query: 250 -DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ +
Sbjct: 241 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANI 300
Query: 309 ALAKQRVDEYIYSQL 323
+LA+ ++ + S++
Sbjct: 301 SLAQYLINARLTSEV 315
>gi|226530329|ref|NP_001151982.1| nucleic acid binding protein [Zea mays]
gi|195651499|gb|ACG45217.1| nucleic acid binding protein [Zea mays]
gi|224029689|gb|ACN33920.1| unknown [Zea mays]
gi|413947861|gb|AFW80510.1| nucleic acid binding protein [Zea mays]
Length = 705
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 96/170 (56%), Gaps = 12/170 (7%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSD 110
FR++ P ++G +IGK G+ ++ I+ +T IK+ D + + ++R+I IS + + +S
Sbjct: 380 FRMLCPQDKVGSIIGKGGNIVKTIQNDTGCEIKVLDTVPKTDDRIISISGPAHPSDGISP 439
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A+NA+ + I+ E T RL+++G+Q GC++G G I ++R
Sbjct: 440 AQNAILHVQRKIMLPSSDKKEGPA---------TCRLIVSGNQVGCVLGKGGSIIAEMRK 490
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
SGA IV+L+ +++P H D V+QI+G A+ AL+++ +LR +
Sbjct: 491 LSGAFIVVLSKDKIPRGVPEH--DEVIQINGSCEAIQEALMQVTARLRNH 538
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 43/219 (19%)
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
+ N+E +A A ++R+L+ SQAG L+G G ++++ +G I +L N LP
Sbjct: 218 EGNNETGNASAAS-APVSLRMLVLYSQAGWLLGKGGSVVKQMAADNGCEIRVLKDN-LPS 275
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS----------------- 229
CA + D++ QI+G++ +V L + L +PP++ +++
Sbjct: 276 CALLN--DKLCQITGEIDSVRKGLNAVSEVLLAHPPKETDAVADVHSSGSSSRSLFSQPD 333
Query: 230 --PAYNYSAIR------PAQ---PF----VEP-------TSADYVTFEMLISESLVGGLI 267
P+ S P+Q PF ++P + + ++F ML + VG +I
Sbjct: 334 GLPSGMQSNFHIPLQGPPSQANGPFDIVDLQPPIHGHASVAIESLSFRMLCPQDKVGSII 393
Query: 268 GRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
G+ G+ + I+N++G IKV + R I G A
Sbjct: 394 GKGGNIVKTIQNDTGCEIKVLDTVPKTDDRIISISGPAH 432
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
+FRI+ P+ + G VIGK G I KIR+ET+ I++ A +ERVI I++ + D
Sbjct: 46 IFRILCPASKSGNVIGKGGAIIAKIRQETRMRIRVDRAAPGCDERVIFITAANKD 100
>gi|444513545|gb|ELV10391.1| Poly(rC)-binding protein 4 [Tupaia chinensis]
Length = 399
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 141/299 (47%), Gaps = 50/299 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ +V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGSNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R ++GA + + A + LP + ++R V +SG A++ + +I + E
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILEG------- 173
Query: 228 ISPAYNYSAIRPAQ------------PFVEPT-------SADYVTFEMLISESLVGGLIG 268
S Y A+ PA+ PF P+ S + E L+ L+G +IG
Sbjct: 174 FSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGCVIG 233
Query: 269 RCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
R GS IS IR SGA IK+ RH+ GS +ALA +Y+ + ++ A
Sbjct: 234 RQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALA-----QYLITACLETA 287
>gi|260829253|ref|XP_002609576.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
gi|229294938|gb|EEN65586.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
Length = 408
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 139/315 (44%), Gaps = 56/315 (17%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A + + R+I+ + +G +IGK+G I++ REE+ A I I+D ER++ I+
Sbjct: 15 APSVTLTIRLIMQGKDVGSIIGKKGDTIKRFREESGARINISDG--SSPERIVTITG--- 69
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
EN L+ + K ++ A ++ V T+RL++ SQ G LIG G
Sbjct: 70 -----STENILKAFNMIGKKFEEDMKAAHVNSSVPVPPVTLRLIVPASQCGSLIGKGGSK 124
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR- 223
I+++R +GA+I + A + LP + ++R V +SG A+ + I + E+PP+
Sbjct: 125 IKEIREVTGASIQV-AGDMLP-----NSTERAVTVSGTPDAISQCVYHICCVMLESPPKG 178
Query: 224 -----------------------------------QVISISPAYNYSAIRPAQPFV---- 244
Q I+P A Q V
Sbjct: 179 ATIPYKPRPASGTSTSGPVVFAGGQLTKLHQLALQQTPYITPGTTLPAALATQFGVQTAS 238
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGS 304
+P + T E+ I L+G +IG+ G I+ IR SGA IK+ G + R + G+
Sbjct: 239 QPGNPSSQTHELTIPNELIGCIIGKGGCKINEIRQCSGATIKIAGMQEGSTDRQVTITGT 298
Query: 305 AQQVALAKQRVDEYI 319
+ +++A+ ++ +
Sbjct: 299 PESISMAQFLINTSL 313
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 87/225 (38%), Gaps = 59/225 (26%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GK+ ED ++ + V R+IVP+ Q G +IGK G +I++IRE T A+I++A
Sbjct: 82 GKKFEED--MKAAHVNSSVPVPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVA 139
Query: 87 -DAIARHEERVIIISSKDN-----------------------------------DNVVSD 110
D + ER + +S + V
Sbjct: 140 GDMLPNSTERAVTVSGTPDAISQCVYHICCVMLESPPKGATIPYKPRPASGTSTSGPVVF 199
Query: 111 AENALQQIAALILKDDDSNSEASKVAA--------------GHVAANTIRLLIAGSQAGC 156
A L ++ L L+ + + + A G+ ++ T L I GC
Sbjct: 200 AGGQLTKLHQLALQQTPYITPGTTLPAALATQFGVQTASQPGNPSSQTHELTIPNELIGC 259
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+IG G I ++R SGATI I + +DR V I+G
Sbjct: 260 IIGKGGCKINEIRQCSGATIKIAGMQE-------GSTDRQVTITG 297
>gi|297833144|ref|XP_002884454.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
gi|297330294|gb|EFH60713.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
Length = 568
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 109/194 (56%), Gaps = 8/194 (4%)
Query: 28 KRRREDGEIEGSDPKRR-AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
K E+G G + KR + +FR++VP++++G +IG++G I+KI EET+A IKI
Sbjct: 155 KSESEEGATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKIL 214
Query: 87 DAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D ER +++S K+ ++ + + + L ++ I+ D + E S+ A + +
Sbjct: 215 DGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGEPSQ--APPASKVST 270
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLL+ SQAG LIG G ++ ++ +S + +L LP+ A + DRVV++ G+ +
Sbjct: 271 RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL--QDDRVVEVVGEPTS 328
Query: 206 VLNALVEIGNQLRE 219
V AL I + LR+
Sbjct: 329 VHKALELIASHLRK 342
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P A VT +M I S +IG GSNIS R SGA + + +G ++ G+
Sbjct: 443 PMVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTG 502
Query: 306 QQVALAKQRVDEYI 319
QV A Q + ++
Sbjct: 503 SQVQTAMQLIQNFM 516
>gi|356549146|ref|XP_003542958.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 106/172 (61%), Gaps = 10/172 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNVVS 109
+FR+IVP ++G +IG++G I+K EETKA I++ D +R+++IS K D + +S
Sbjct: 47 VFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRIVLISGKEDLEAPLS 106
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A +A+ ++ + + D+ ++AS VA ++RLL+A +QA LIG G I+
Sbjct: 107 PAMDAVIRVFKRVSGFSEIDAKNKASA-----VAFCSVRLLVASTQAINLIGKQGSLIKS 161
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ ++GA++ +L+ +++P A+A E R+V++ G+ VL AL + LR+
Sbjct: 162 IQENTGASVRVLSGDEVPFYAAADE--RIVELQGEAMKVLKALEAVVGHLRK 211
>gi|224123476|ref|XP_002319087.1| predicted protein [Populus trichocarpa]
gi|222857463|gb|EEE95010.1| predicted protein [Populus trichocarpa]
Length = 392
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAE 112
++VP++++G +IG++G I+KI EET+A IKI D ER +++S+K+ D+ + A
Sbjct: 1 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVSAKEEPDSSLPPAM 60
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ L ++ I+ DS+S + +G A + RLL+ SQAG LIG G ++ ++ +S
Sbjct: 61 DGLLRVHKRIIDGLDSDSSNTPPTSG--AKVSTRLLVPASQAGSLIGKQGGTVKSIQEAS 118
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ +L LP+ A + DRVV++ G+ V A+ I + LR+
Sbjct: 119 TCIVRVLGAEDLPVFAL--QDDRVVEVLGEAAGVHKAVELIASHLRK 163
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P+ +T +M I S +IG G++IS IR SGA + + +G ++ G+A
Sbjct: 265 PSMITQITQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGAMTVEISGTA 324
Query: 306 QQVALAKQRVDEYI 319
QV A+Q + ++
Sbjct: 325 SQVQTAQQLIQNFM 338
>gi|308080276|ref|NP_001183239.1| hypothetical protein [Zea mays]
gi|238010240|gb|ACR36155.1| unknown [Zea mays]
gi|414884425|tpg|DAA60439.1| TPA: hypothetical protein ZEAMMB73_126154 [Zea mays]
Length = 647
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 11/195 (5%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q V FR+++P+ G +IGK+G I+ I ET A I + +A +ERVI I + ++
Sbjct: 276 QQVSFRLLLPTYLAGGLIGKKGLIIKGIEVETGACIDVGAPVAGCKERVITICALES--- 332
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIE 166
D+E + Q A L++ D E + + A+ +R+L+ +Q GCL+G+ G I+
Sbjct: 333 -PDSEYHIVQSALLLIFDRMMEMETNTHSTFEKASQFLVRVLVLKNQFGCLVGLGGSIIK 391
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++ N++GA I IL ++P CAS E VVQI+G++ + NAL + +LR +
Sbjct: 392 EMVNTTGARIQILDDTEIPACASTFE--LVVQITGELMNIRNALSLVFWKLR----NHIF 445
Query: 227 SISPAYNYSAIRPAQ 241
S YN S I ++
Sbjct: 446 SNETDYNNSHISSSE 460
>gi|255574127|ref|XP_002527979.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223532605|gb|EEF34391.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 416
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 102/172 (59%), Gaps = 3/172 (1%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D ++R+IVP ++G +IG++G I+K+ ET+A I+I D +R+++IS K+ +
Sbjct: 26 DNVYRLIVPVAKVGSIIGRKGELIKKMCVETRARIRILDGPPSISDRIVLISGKEEPEAA 85
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A +A+ ++ + ++A A A ++++LL+A SQA LIG G I+
Sbjct: 86 LSPAMDAVLRVFKRVSGLSAGEADAMGSAVAGAAFSSVKLLVASSQAINLIGKQGSTIKS 145
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ S+ AT+ +LA + P A++ E R+V+I G+ VL AL + QLR+
Sbjct: 146 IQESTAATVRVLAEEEAPSYATSDE--RIVEIHGEASKVLKALEGVIGQLRK 195
>gi|147863214|emb|CAN78372.1| hypothetical protein VITISV_006585 [Vitis vinifera]
Length = 807
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 104/179 (58%), Gaps = 18/179 (10%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
++V+F+++ ++G +IGK G I+ ++ ET A+IKIADA +ERV++IS+++ +
Sbjct: 422 EEVVFKLLCHFEKVGSLIGKGGSIIRXLQSETGASIKIADAAPDSDERVVVISAREACTL 481
Query: 108 V------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A++A+ ++ I +++ AA RLL+ Q GCL+G
Sbjct: 482 TNXEQKHSPAQDAVIRVHCRI----------AEIGFEPGAAVVARLLVHSQQIGCLLGKG 531
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R ++GA+I I A Q+P C S ++D +VQ+ G + +V +AL I +++RE
Sbjct: 532 GIIISEMRRATGASIRIFAKEQVPKCGS--QNDELVQVIGSLQSVQDALFCITSRIRET 588
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 97/189 (51%), Gaps = 39/189 (20%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII----- 99
AK Q VLFRI+ P+ + G VIGK G I++ RE+T A I+I D++ +ERVI+I
Sbjct: 52 AKPQ-VLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVADAV 110
Query: 100 -------------------------SSKD----NDNVVSDAENALQQIAALILK-DDDSN 129
SS + +D+ S A+ AL ++ ILK D++
Sbjct: 111 KSKREASAICGAEANDGEESANLSNSSPNPVAVDDDESSPAQQALVRVFERILKVDEERE 170
Query: 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
+ K G+VA RLL +Q GC++G G+ +EK+R SGA I +L + +P CAS
Sbjct: 171 EKEKKEDLGNVAV-CCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACAS 229
Query: 190 AHESDRVVQ 198
D ++Q
Sbjct: 230 --PGDELIQ 236
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 33/187 (17%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+LL + G LIG G I L++ +GA+I I A+ +RVV IS
Sbjct: 426 FKLLCHFEKVGSLIGKGGSIIRXLQSETGASIKIAD-------AAPDSDERVVVISAREA 478
Query: 205 AVLNALVEIGNQLRENPPRQ--VISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESL 262
L N +++ P Q VI + R A+ EP +A V +L+
Sbjct: 479 CTLT------NXEQKHSPAQDAVIRVH-------CRIAEIGFEPGAA--VVARLLVHSQQ 523
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGK-----GEQKHRHIQFGGSAQQVALA----KQ 313
+G L+G+ G IS +R +GA I+++ + G Q +Q GS Q V A
Sbjct: 524 IGCLLGKGGIIISEMRRATGASIRIFAKEQVPKCGSQNDELVQVIGSLQSVQDALFCITS 583
Query: 314 RVDEYIY 320
R+ E I+
Sbjct: 584 RIRETIF 590
>gi|147807331|emb|CAN73002.1| hypothetical protein VITISV_044056 [Vitis vinifera]
Length = 1121
Score = 91.3 bits (225), Expect = 5e-16, Method: Composition-based stats.
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 10/170 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR+++P +++G +IG++G I+K+ EETKA IKI D ER +++S+K+ D ++
Sbjct: 41 VFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVSAKEEPDAPIA 100
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I+ D S+ A V+ RLL+ +QAG LIG G I+ ++
Sbjct: 101 PAIDGLLRVHKCIM---DVESDVPSAAGVMVST---RLLVVAAQAGSLIGKQGATIKSIQ 154
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S + +L N LPL A ++D VV+I G+ +V A+ I + LR+
Sbjct: 155 EASNCIVRVLGEN-LPLFAL--QNDTVVEIQGEPASVHKAVELIASNLRK 201
Score = 41.6 bits (96), Expect = 0.56, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 31/157 (19%)
Query: 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197
G N R+LI + G +IG G++I+KL + A I IL S+R V
Sbjct: 35 GWPGENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILD-------GPPGTSERAV 87
Query: 198 QISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN-----YSAIRPAQPFVEPTSADYV 252
+S +E P I+PA + + I + V + V
Sbjct: 88 MVSA----------------KEEPD---APIAPAIDGLLRVHKCIMDVESDVPSAAGVMV 128
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+ +L+ + G LIG+ G+ I I+ S +++V G
Sbjct: 129 STRLLVVAAQAGSLIGKQGATIKSIQEASNCIVRVLG 165
>gi|30683629|ref|NP_172869.2| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30102666|gb|AAP21251.1| At1g14170 [Arabidopsis thaliana]
gi|110743444|dbj|BAE99608.1| hypothetical protein [Arabidopsis thaliana]
gi|332190993|gb|AEE29114.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 454
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 10/186 (5%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK---- 102
++D ++R + P ++ G +IGK G ++IR ETK+ ++I +A+ EERV+ + S
Sbjct: 16 SEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 75
Query: 103 ----DNDNVVSDAENALQQIAALILKDDDSNSEASKVAA-GHVAANTIRLLIAGSQAGCL 157
D+ +V A +AL ++ +++ D D + G T+R+L+ Q GC+
Sbjct: 76 NHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCV 135
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG GQ I+ LRN + A I ++ + LP CA D ++ I G+ V AL ++ + L
Sbjct: 136 IGKGGQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 194
Query: 218 RENPPR 223
+NP R
Sbjct: 195 HDNPSR 200
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A++ I P+ +G VIGK G I +IR+ET ATI++ + ++ +I ISSK+
Sbjct: 239 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEF 298
Query: 105 DNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A NA LQQ SE A +A +T RLL++ SQ GCLIG
Sbjct: 299 YEDQSPAVNAAIRLQQRC----------SEKVGKDANDLAIST-RLLVSSSQIGCLIGKG 347
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R+ + A I IL +P A E + +VQI+G A + AL ++ +LR N
Sbjct: 348 GAVISEMRSVTRANIRILQKEDVP--KIAREDEEMVQITGSPDAAMKALTQVILRLRAN 404
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 76/281 (27%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI------ADAIA-RHEERVIIIS 100
Q V R++VPS QIG VIGK G IQ +R +T A I++ A A+ H+E ++II
Sbjct: 119 QTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIG 178
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSE---------------ASKVAAGHVAAN-- 143
VV + AL Q+A+L L D+ S + A ++A +++
Sbjct: 179 EP---LVVRE---ALYQVASL-LHDNPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRN 231
Query: 144 -TIRLLIAGSQAGCLIGMS-GQN-----------IEKLRNSSGATIVILAPNQLPLCASA 190
+R IA ++ C+ + +N I ++R +GATI + +
Sbjct: 232 YAVRRDIADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNT-------SET 284
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+ D ++ IS + E+ SPA N +AIR Q E D
Sbjct: 285 DDDDCIIFIS-------------SKEFYEDQ-------SPAVN-AAIRLQQRCSEKVGKD 323
Query: 251 ----YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
++ +L+S S +G LIG+ G+ IS +R+ + A I++
Sbjct: 324 ANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRI 364
>gi|218192926|gb|EEC75353.1| hypothetical protein OsI_11789 [Oryza sativa Indica Group]
Length = 478
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 52/258 (20%)
Query: 75 IREETKATIKIADAIARHEERVI-IISSKDNDNVVSDAEN-------ALQQIAALILKDD 126
+R +T+A I+I ++++ +ERVI I SS N + DAE+ AL ++ + DD
Sbjct: 1 MRADTQAKIRIGESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKLSIDD 60
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
D +E S V T+RLL+ Q GC+IG G I+ +R+ +GA I +L+ LP
Sbjct: 61 DIGNEESDEGLAQV---TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPA 117
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ---------------------- 224
CA + D ++QISGD V AL+++ ++L +NP R
Sbjct: 118 CAIS--GDELLQISGDSTVVRKALLQVSSRLHDNPSRSQHLLASSMTQPYPVGSHLGSSS 175
Query: 225 ---VISISP------------AYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGR 269
V+ I+P A ++ +I QP E +SA + +L + S VGG+IG+
Sbjct: 176 TAPVVGITPLISSYGGYKGDVAGDWPSIY--QPRREESSAKEFSLRLLCAASNVGGVIGK 233
Query: 270 CGSNISRIRNESGAMIKV 287
G I +IR ESGA IKV
Sbjct: 234 GGGIIKQIRQESGAFIKV 251
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 106/194 (54%), Gaps = 18/194 (9%)
Query: 34 GEIEGSDP------KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
G++ G P + + A++ R++ + +G VIGK G I++IR+E+ A IK+ D
Sbjct: 194 GDVAGDWPSIYQPRREESSAKEFSLRLLCAASNVGGVIGKGGGIIKQIRQESGAFIKV-D 252
Query: 88 AIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
+ ++ +I +S+K+ ++ VS NA + + D S + + T R
Sbjct: 253 SSNTEDDCIITVSAKEFFEDPVSPTINAAVHLQPRCSEKTDPESA--------IPSYTTR 304
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LL++ S+ GCLIG G I ++R +S A I IL+ +P A+ E + +VQISGD+ V
Sbjct: 305 LLVSTSRIGCLIGKGGSIITEIRRTSRANIRILSKENVPKVAA--EDEEMVQISGDLDVV 362
Query: 207 LNALVEIGNQLREN 220
+AL++I +L+ N
Sbjct: 363 RHALLQITTRLKAN 376
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
V R++VPS QIG +IGK GH IQ IR +T A I++
Sbjct: 74 VTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRV 109
>gi|356529691|ref|XP_003533422.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 611
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 145/338 (42%), Gaps = 65/338 (19%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
E S+ + +V+FR++ + G VIGK G ++ + +T A+I A ++ H ER+
Sbjct: 278 ESSNRDSKGGEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASIIFAAPLSEHAERI 337
Query: 97 IIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN------TIRLLI 149
+ IS+ ++ ++ S A++A+ + A I++D + G + + T RLL+
Sbjct: 338 VTISAIESLESCNSPAQDAVILVFARIIED--------HIGKGFLQVSSMESPVTARLLV 389
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
A S G GQ I +LR +GA I IL +P AS + D VVQI+G+ V NA
Sbjct: 390 ATSTVNSWSGNEGQVILELREVTGADIQILHGESVPNGAS--DDDVVVQITGEYRCVQNA 447
Query: 210 LVEIGNQLREN--PPRQVISISPAYNYSAIR---PAQPFVEPTSA--------------- 249
L +I +++R+N P V P N+ + +PF SA
Sbjct: 448 LYKITSRIRDNLSPNEAVTEARPKSNWKVNKDPVKGKPFSRGKSAFPSGRFLPRNAGVHA 507
Query: 250 ----------------------------DYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
T E+++SE + G + G G N+ RIR S
Sbjct: 508 ETILQNGELHTDLSENLERGRGNMFATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQIS 567
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
GA + VY + G+ Q A+ + +I
Sbjct: 568 GATVTVYDPSVGTSGGKVVISGTPDQTLAAQSLLQAFI 605
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 59/285 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK------- 102
+ FR++ + +G +IG G + ++R ET I D+++ E+RVI++
Sbjct: 50 IAFRLVCHASIVGGLIGSSGSIVSQLRRETACKIHCEDSLSSAEDRVILVIGSVSPRKGL 109
Query: 103 ---DNDNV-VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---IRLLIAGSQAG 155
D V VS A+ A+ ++ + EA K + A N+ +LL SQ G
Sbjct: 110 QLGDGGEVEVSSAQEAIVRVFERVW-----GLEAEKGVNSNRAVNSEVFSKLLAHTSQIG 164
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
++G G+NI +RNS+GA I + P P CA+ E +V I+G + AV AL+ + +
Sbjct: 165 AVVGKGGKNITAIRNSTGAKIRVCPP---PQCATKDE--ELVLITGGILAVKKALISVSH 219
Query: 216 QLRENPPRQVISIS------PAYNYSAIRP-AQPFV----------------------EP 246
L++ PP + +S +++ S+ P A+ F E
Sbjct: 220 CLQDCPPLCKVPVSSSIPTVSSFDRSSSDPNAELFPRLNSLLTSMEGLSIYERTTNSNES 279
Query: 247 TSADY------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMI 285
++ D V F +L S ++ G +IG+ G+ + + +++GA I
Sbjct: 280 SNRDSKGGEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASI 324
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 65/295 (22%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVII-- 98
RA +V +++ + QIG V+GK G I IR T A I++ + EE V+I
Sbjct: 146 RAVNSEVFSKLLAHTSQIGAVVGKGGKNITAIRNSTGAKIRVCPPPQCATKDEELVLITG 205
Query: 99 ---------------------------------ISSKDNDNVVSDAE------NALQQIA 119
+SS D + +AE + L +
Sbjct: 206 GILAVKKALISVSHCLQDCPPLCKVPVSSSIPTVSSFDRSSSDPNAELFPRLNSLLTSME 265
Query: 120 ALIL--KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
L + + +SN +++ + G RLL + + AG +IG G + L + +GA+I+
Sbjct: 266 GLSIYERTTNSNESSNRDSKGGEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASII 325
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAI 237
AP S H ++R+V IS I + N P Q I
Sbjct: 326 FAAP------LSEH-AERIVTISA-----------IESLESCNSPAQDAVILVFARIIED 367
Query: 238 RPAQPFVEPTSADY-VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
+ F++ +S + VT +L++ S V G G I +R +GA I++ G+
Sbjct: 368 HIGKGFLQVSSMESPVTARLLVATSTVNSWSGNEGQVILELREVTGADIQILHGE 422
>gi|79317957|ref|NP_001031044.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|222424209|dbj|BAH20063.1| AT1G14170 [Arabidopsis thaliana]
gi|332190994|gb|AEE29115.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 446
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 10/185 (5%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK----- 102
D ++R + P ++ G +IGK G ++IR ETK+ ++I +A+ EERV+ + S
Sbjct: 9 HDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 68
Query: 103 ---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAA-GHVAANTIRLLIAGSQAGCLI 158
D+ +V A +AL ++ +++ D D + G T+R+L+ Q GC+I
Sbjct: 69 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 128
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G GQ I+ LRN + A I ++ + LP CA D ++ I G+ V AL ++ + L
Sbjct: 129 GKGGQVIQNLRNDTNAQIRVIK-DHLPACALTLSHDELLLIIGEPLVVREALYQVASLLH 187
Query: 219 ENPPR 223
+NP R
Sbjct: 188 DNPSR 192
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A++ I P+ +G VIGK G I +IR+ET ATI++ + ++ +I ISSK+
Sbjct: 231 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEF 290
Query: 105 DNVVSDAENA---LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
S A NA LQQ SE A +A +T RLL++ SQ GCLIG
Sbjct: 291 YEDQSPAVNAAIRLQQRC----------SEKVGKDANDLAIST-RLLVSSSQIGCLIGKG 339
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I ++R+ + A I IL +P A E + +VQI+G A + AL ++ +LR N
Sbjct: 340 GAVISEMRSVTRANIRILQKEDVP--KIAREDEEMVQITGSPDAAMKALTQVILRLRAN 396
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 125/281 (44%), Gaps = 76/281 (27%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI------ADAIA-RHEERVIIIS 100
Q V R++VPS QIG VIGK G IQ +R +T A I++ A A+ H+E ++II
Sbjct: 111 QTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIG 170
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSE---------------ASKVAAGHVAAN-- 143
VV + AL Q+A+L L D+ S + A ++A +++
Sbjct: 171 EP---LVVRE---ALYQVASL-LHDNPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRN 223
Query: 144 -TIRLLIAGSQAGCLIGMS-GQN-----------IEKLRNSSGATIVILAPNQLPLCASA 190
+R IA ++ C+ + +N I ++R +GATI + +
Sbjct: 224 YAVRRDIADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNT-------SET 276
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+ D ++ IS + E+ SPA N +AIR Q E D
Sbjct: 277 DDDDCIIFIS-------------SKEFYEDQ-------SPAVN-AAIRLQQRCSEKVGKD 315
Query: 251 ----YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
++ +L+S S +G LIG+ G+ IS +R+ + A I++
Sbjct: 316 ANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRI 356
>gi|224077694|ref|XP_002305366.1| predicted protein [Populus trichocarpa]
gi|222848330|gb|EEE85877.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 118/216 (54%), Gaps = 24/216 (11%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ +++ R++ P+ IG VIGK G I +IR+E+ ATIK+ + + ++ +I
Sbjct: 20 SAPRDELASKEFSLRMVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSASEGDDCLIT 79
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
IS+K+ + D + + AAL L+ SE + +G + + T RLL+ S GCL+
Sbjct: 80 ISAKE----ICDDQYSPTIEAALRLQ--PRCSEKMERDSG-LFSFTTRLLVPSSHIGCLL 132
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+++R + A I I ++LP +A + D +VQISGD+ +AL++I +LR
Sbjct: 133 GKGGLIIDEMRKLTKAIIRIPRKDKLP--KTALDDDEMVQISGDLDIAKDALIQISRRLR 190
Query: 219 ENPPRQVISISPAYN----YSAIRPAQPFVEPTSAD 250
N A++ SAI P P++ P SA+
Sbjct: 191 AN----------AFDREGLMSAILPVFPYL-PVSAE 215
>gi|356556240|ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 442
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 112/182 (61%), Gaps = 6/182 (3%)
Query: 41 PKRRAKAQ--DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
P++R D +FR+IVP ++G +IG++G I+K+ EET++ I++ DA +R+++
Sbjct: 41 PEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVL 100
Query: 99 ISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+S K+ + +S A +A+ +I + ++++E + AAG +A +IRLL+A +QA L
Sbjct: 101 VSGKEEPEAALSPAMDAVVRIFKRVSGLSETDAENKESAAG-LAFCSIRLLVASTQAINL 159
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+ ++ ++ A++ +L+ +++ A+ E R+V+I G+ VL AL + L
Sbjct: 160 IGKQGSLIKSIQENTSASVRVLSGDEVQSYATVDE--RIVEIQGEALKVLKALEAVVGHL 217
Query: 218 RE 219
R+
Sbjct: 218 RK 219
>gi|189238821|ref|XP_968538.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein k
[Tribolium castaneum]
gi|270010156|gb|EFA06604.1| hypothetical protein TcasGA2_TC009519 [Tribolium castaneum]
Length = 414
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 34/211 (16%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R DGE+ P++R++ D R+++PS+ G +IGK G I K+R + KA+I + D
Sbjct: 2 KREADGEM--GSPQKRSRRGDEEVRLLIPSKVAGSIIGKGGQNITKLRSQYKASITVPDC 59
Query: 89 IARHEERVIIISSKDND---NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN-- 143
ER++ +SS D D N+V+D L++ G V N
Sbjct: 60 PG--PERMLTLSS-DLDTICNIVTDVVPNLEE------------------NGGRVNGNEL 98
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+R++I SQAGC+IG +G I++LR +GA I I + + +DR++QI G+
Sbjct: 99 DLRMMIHQSQAGCVIGKAGYKIKELREKTGARIKIFS------NVAPQSTDRIIQIVGEP 152
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNY 234
++++ EI ++ NP + +++ +NY
Sbjct: 153 SKCVDSIREIITLIKSNPIKGIVNPYDPHNY 183
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 32/144 (22%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI AG +IG GQNI KLR+ A+I + P C +R++ +S D+
Sbjct: 23 VRLLIPSKVAGSIIGKGGQNITKLRSQYKASITV------PDCPGP---ERMLTLSSDLD 73
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
+ N + ++ L EN R + + + M+I +S G
Sbjct: 74 TICNIVTDVVPNLEENGGR-----------------------VNGNELDLRMMIHQSQAG 110
Query: 265 GLIGRCGSNISRIRNESGAMIKVY 288
+IG+ G I +R ++GA IK++
Sbjct: 111 CVIGKAGYKIKELREKTGARIKIF 134
>gi|12597878|gb|AAG60186.1|AC084763_6 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|31433543|gb|AAP55041.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|125532979|gb|EAY79544.1| hypothetical protein OsI_34673 [Oryza sativa Indica Group]
gi|125575714|gb|EAZ16998.1| hypothetical protein OsJ_32483 [Oryza sativa Japonica Group]
gi|215769329|dbj|BAH01558.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 458
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 103/174 (59%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ EETKA +++ + ER++++S K++ +
Sbjct: 55 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKAKVRVLEGPVGATERIVLVSGKEDPALE 114
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A +AL ++ + D +E ++ A G AA RLL+ G+QA LIG G +I
Sbjct: 115 LPPAMDALMRVFKRVSGITDGAAEGTQAATAPGVCAA---RLLVPGAQAINLIGKQGASI 171
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ +GATI +++ ++ E +R+V+I G+ VL AL + N LR+
Sbjct: 172 KAIQEGTGATIRVISIDERERPFYVIEDERIVEIQGETEKVLKALQAVSNHLRK 225
>gi|426218397|ref|XP_004003433.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Ovis aries]
Length = 319
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 56/315 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI- 228
S+GA + + A + LP + ++R V ISG A++ + +I + E+P + V +
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPRKGVTVVV 178
Query: 229 ----------------------------------------SPAYNYSAIRPAQPFVEPTS 248
+P PA P S
Sbjct: 179 APKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPAGLDAS 238
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ +
Sbjct: 239 PPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANI 298
Query: 309 ALAKQRVDEYIYSQL 323
+LA+ ++ + S++
Sbjct: 299 SLAQYLINARLTSEV 313
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|124359392|gb|ABN05856.1| KH, type 1 [Medicago truncatula]
Length = 564
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+A Q++ F+II + +IG VIGK G+ I+ ++ ET AT+ + ++A E+R+I I++ +
Sbjct: 123 KAHQQEITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASE 182
Query: 104 N-DNVVSDAENAL-----QQIAALILKDDDSN-SEASKVAAGHVAANTIRLLIAGSQAGC 156
+ ++ S A+ A + + A I K DS + S V A +L+++ +Q GC
Sbjct: 183 SPESRYSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTA--------QLVVSSNQVGC 234
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
L+G G + ++R ++GA+I I+ +++ CAS ++D+VVQISG+ V +AL +
Sbjct: 235 LLGKGGVIVSEMRKATGASIRIVGTDKVSKCAS--DNDQVVQISGEFSNVQDALYNATGR 292
Query: 217 LREN 220
LR+N
Sbjct: 293 LRDN 296
>gi|357147442|ref|XP_003574345.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 1-like
[Brachypodium distachyon]
Length = 447
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 99/172 (57%), Gaps = 1/172 (0%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ EETKA +++ D ERV+++S K+ +
Sbjct: 46 DSVFRMVVPVXKVGSIIGRKGELIKRLVEETKARVRVLDGPVGATERVVLVSGKEEPGLD 105
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A +AL ++ + D ++++ A RLL+ G+QA LIG G +I+
Sbjct: 106 LPPAMDALIRVFKRVNGITDVAADSTTQTAAPPGVCAARLLVPGAQAINLIGKQGASIKA 165
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ +GATI +++ ++ + +R+V+I G+ VL AL + N LR+
Sbjct: 166 IQEGTGATIRVISIDERERPFYVTDDERIVEIQGETEKVLKALQAVSNHLRK 217
>gi|449473856|ref|XP_004186185.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC) binding protein 4
[Taeniopygia guttata]
Length = 245
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 135/281 (48%), Gaps = 46/281 (16%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G P+ + + R+++ ++IG +IGK+G +++IRE++ A I I++ ER+
Sbjct: 11 GGSPEETELSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSTARITISE--GSCPERIT 68
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
I+ D V A+ IA + ++D + V+AG A T+RL+I SQ G L
Sbjct: 69 TITG-STDAVF----RAVSMIAFKL--EEDLGAGGDGVSAGR-APVTLRLVIPASQCGSL 120
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG +G I ++R S+GA + + A + LP + ++R V +SG VP + +++ Q+
Sbjct: 121 IGKAGAKIREIRESTGAQVQV-AGDLLP-----NSTERAVTVSG-VP---DTIIQCVRQI 170
Query: 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRI 277
+P S+ + E L+ L+G +IGR GS IS I
Sbjct: 171 CLDP--------------------------SSQSSSQEFLVPNDLIGCIIGRHGSKISEI 204
Query: 278 RNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEY 318
R SGA IK+ RH+ G+ + LA+ + +
Sbjct: 205 RQMSGAHIKIGNQTEGSSERHVTITGTPVSITLAQYLITAW 245
>gi|297742912|emb|CBI35779.3| unnamed protein product [Vitis vinifera]
Length = 340
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 20/246 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVIIISSKDNDNVVSD 110
R++ P R IG VI K G I +IR E+ A IK+ + + A ++ ++ I +K+ +
Sbjct: 45 LRLVCPIRNIGGVIRKGGVFINQIRRESGAIIKVDSTSAAEADDCLVTILAKERLHFPRG 104
Query: 111 AENA-LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ + + + ++ D N + T+RLL++ +Q GC+IG GQ I+ +R
Sbjct: 105 PQTSHCIFLYRMCMRLWDWNCPSGTF--------TVRLLVSFNQIGCVIGKGGQIIQSIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ----V 225
+ SGA I IL + LP C+ + S+ ++QIS + V L +I ++L +NP R V
Sbjct: 157 SESGAQIRILKDDHLPSCSLS--SNELIQISKEPSIVRKILYQIASRLHDNPSRSQHLFV 214
Query: 226 ISISPAYNYS----AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
+ Y+ S + P ++ S+ + ++ +GG+IG+ I++IR E
Sbjct: 215 YVVPIGYSSSGSLMGLTSGAPIMDEASSKEFSLCLVCPIGNIGGMIGKGDVIINQIRQEF 274
Query: 282 GAMIKV 287
GA IKV
Sbjct: 275 GATIKV 280
>gi|224076902|ref|XP_002305041.1| predicted protein [Populus trichocarpa]
gi|222848005|gb|EEE85552.1| predicted protein [Populus trichocarpa]
Length = 623
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 77/334 (23%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNV 107
+++ R++ P +IG+VIGK G I+ IR+ + A I++ D A +E +I +I+++ D++
Sbjct: 305 ELIIRLLCPFDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADRDECIITVIATESPDDL 364
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S A + A++L N E + + IR L+ GC+IG SG + +
Sbjct: 365 KSMA------VEAILLLQGKINDEDNDIVG-------IRFLVPSKVIGCIIGKSGAIVNE 411
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ--- 224
+R + A + I ++L CA ++ D +V+++G+V +V +ALV+I +LR++ ++
Sbjct: 412 IRKRTNADVCISKVDKLK-CADSN--DELVEVAGEVGSVRDALVQIVLRLRDDVLKEKDG 468
Query: 225 ----------VISISPAYNYSAIRPAQPFVEPTSADY----------------------- 251
V + + +I P+ P V P D
Sbjct: 469 GLNSSVGTDSVYPVHAGISIPSILPSVPPVAPMGYDQRAESGSGLGLFSSSSLYGYGSLP 528
Query: 252 ------------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T EML+ + VG +IG+ G+NI+ IR SGAMI++
Sbjct: 529 MGENSYGSLASYSLSKLYEGLPPPSTLEMLVPANAVGKVIGKGGANIANIRKISGAMIEI 588
Query: 288 YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
K + R G +Q A+ + +I +
Sbjct: 589 SDAKSARGDRIAYISGKPEQKQAAENLIQAFIMA 622
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 136/354 (38%), Gaps = 94/354 (26%)
Query: 26 SGKRRRE----DGEIEGSDPKRRAKAQD----VLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
SGKR R DG+ + K D V++RI+ P IG VIGK G I IR
Sbjct: 4 SGKRSRPQRDYDGDTNNQKRHKDNKGTDNDELVVYRILCPDEVIGSVIGKSGKVINSIRN 63
Query: 78 ETKATIKIADAIARHEERVIIISSK---------DND----NVVSDAENALQQIAALI-- 122
E++A +K+ D RVI I D+D + + A++AL ++ A I
Sbjct: 64 ESRARVKVVDPFPGAMYRVITIYCNVKEKGDADVDDDFHQADPLCPAQDALLKVHAAISN 123
Query: 123 ----LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
L D D K ++L+ SQ+ +IG +G I+KLR+ + A I I
Sbjct: 124 AVAALGDSDKRCRDKK---------ECQILVPTSQSANIIGKAGATIKKLRSKTRANIKI 174
Query: 179 LAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIG---------------NQLRENPP 222
A + P + A + D + I+G+ AV AL + + E PP
Sbjct: 175 TAKDASDPTHSCAMDFDNFLLITGESEAVKKALFAVSAIMYKFSPKEEIPLETTVPEAPP 234
Query: 223 RQVISIS-PAYN-----------------------------------------YSAIRPA 240
+IS P Y YS+ P
Sbjct: 235 SIIISSDVPIYQPGGFYPNADPIVSSRSVPPILGATHIPEFQGYGDMRSSWPIYSSTVPV 294
Query: 241 QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ 294
P TS + +L +G +IG+ GS I IR SGA I+V K ++
Sbjct: 295 VPSFGNTSRSELIIRLLCPFDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADR 348
>gi|148833484|ref|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo sapiens]
gi|157042772|ref|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus musculus]
gi|73996241|ref|XP_857995.1| PREDICTED: poly(rC)-binding protein 2 isoform 20 [Canis lupus
familiaris]
gi|149714839|ref|XP_001504575.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Equus caballus]
gi|291389259|ref|XP_002711066.1| PREDICTED: poly(rC) binding protein 2-like isoform 3 [Oryctolagus
cuniculus]
gi|332206041|ref|XP_003252098.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Nomascus
leucogenys]
gi|348581075|ref|XP_003476303.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cavia porcellus]
gi|410964551|ref|XP_003988817.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Felis catus]
gi|426224372|ref|XP_004006345.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Ovis aries]
gi|426372755|ref|XP_004053283.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Gorilla gorilla
gorilla]
gi|51491472|dbj|BAD36897.1| poly(rC) binding protein 2 [Homo sapiens]
gi|119617112|gb|EAW96706.1| poly(rC) binding protein 2, isoform CRA_a [Homo sapiens]
gi|148672027|gb|EDL03974.1| poly(rC) binding protein 2, isoform CRA_a [Mus musculus]
gi|149031921|gb|EDL86833.1| rCG50739, isoform CRA_b [Rattus norvegicus]
Length = 331
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 152/329 (46%), Gaps = 74/329 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISP-------AYN---------------------------------YSAIRP 239
S SP AY +S I
Sbjct: 176 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIES 235
Query: 240 AQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE 293
+ P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 236 SSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 295
Query: 294 QKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 296 STDRQVTITGSAASISLAQYLINVRLSSE 324
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 239 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 298
Query: 95 RVIIIS 100
R + I+
Sbjct: 299 RQVTIT 304
>gi|193083114|ref|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo sapiens]
gi|73996231|ref|XP_857798.1| PREDICTED: poly(rC)-binding protein 2 isoform 15 [Canis lupus
familiaris]
gi|291389261|ref|XP_002711067.1| PREDICTED: poly(rC) binding protein 2-like isoform 4 [Oryctolagus
cuniculus]
gi|338726296|ref|XP_003365293.1| PREDICTED: poly(rC)-binding protein 2 [Equus caballus]
gi|426224374|ref|XP_004006346.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Ovis aries]
gi|119617117|gb|EAW96711.1| poly(rC) binding protein 2, isoform CRA_f [Homo sapiens]
Length = 318
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 61/316 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISP-------AYN----YSAIRP----------AQPFVEPT----------- 247
S SP AY Y+ +P Q T
Sbjct: 176 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLD 235
Query: 248 -SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAA 295
Query: 307 QVALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 296 SISLAQYLINVRLSSE 311
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|33150676|gb|AAP97216.1|AF092441_1 CBP [Homo sapiens]
Length = 397
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 73/323 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ ER+ ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSFLERI---------TTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGQAGTKIKE 126
Query: 168 LRNSSGATIVI---LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR- 223
+R ++GA + + L PN ++R V +SG A++ + +I + E+PP+
Sbjct: 127 IRETTGAQVQVAGDLFPN---------STERAVTVSGVPDAIILCVRQICAVILESPPKG 177
Query: 224 QVISISPAYN-----------------YSAIRP------------AQPFVEPT------- 247
I P+ + Y A+ A PF P+
Sbjct: 178 ATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTQREVTKLQQLSSHAVPFATPSVVPGLDP 237
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGS 304
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE RH+ GS
Sbjct: 238 GTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---RHVTITGS 294
Query: 305 AQQVALAKQRVDEYIYSQLIQQA 327
+ALA +Y+ + ++ A
Sbjct: 295 PVSIALA-----QYLITACLETA 312
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 232 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 96 VIIIS 100
+ I+
Sbjct: 288 HVTIT 292
>gi|357445989|ref|XP_003593272.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482320|gb|AES63523.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 766
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 109/183 (59%), Gaps = 15/183 (8%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+A Q++ F+II + +IG VIGK G+ I+ ++ ET AT+ + ++A E+R+I I++ +
Sbjct: 325 KAHQQEITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASE 384
Query: 104 N-DNVVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ ++ S A+ A + + A I K DS ++ T +L+++ +Q GCL
Sbjct: 385 SPESRYSPAQKATVLVFSRSVEAGIEKGIDSGLNTG-------SSVTAQLVVSSNQVGCL 437
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
+G G + ++R ++GA+I I+ +++ CAS ++D+VVQISG+ V +AL +L
Sbjct: 438 LGKGGVIVSEMRKATGASIRIVGTDKVSKCAS--DNDQVVQISGEFSNVQDALYNATGRL 495
Query: 218 REN 220
R+N
Sbjct: 496 RDN 498
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 25/223 (11%)
Query: 12 TVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHR 71
+++ + +P P + S KR + + P A V FR++ S +IG VIGK G
Sbjct: 13 SITGLPDPNPFPNGSSKRAKPSKPPQQPLP---IPAGHVAFRLLCNSSRIGGVIGKSGTV 69
Query: 72 IQKIREETKATIKIADAIARHEERVIII--------------SSKDNDNV-VSDAENALQ 116
I+ ++ T A I+I D+ +RVI++ S D + + VS A+ AL
Sbjct: 70 IKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGKVMVRSHSGDGEAIEVSKAQEALL 129
Query: 117 QIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
++ IL + +E + G + RL+ +QAG +IG G+ +EK++ +G I
Sbjct: 130 RVFDRIL---EVAAEMEGIELGDRTV-SCRLVADSAQAGSVIGKGGKVVEKIKKDTGCKI 185
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ N LP C S+ D V++I G V +V ALV + L++
Sbjct: 186 WVCKDN-LPACISS--PDEVIEIEGSVSSVKKALVAVSRNLQD 225
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 239 PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRH 298
P QP P A +V F +L + S +GG+IG+ G+ I ++ +GA I++ E R
Sbjct: 37 PQQPL--PIPAGHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRV 94
Query: 299 IQFGGSA 305
I G++
Sbjct: 95 IMVIGAS 101
>gi|363747265|ref|XP_003643961.1| PREDICTED: poly(rC)-binding protein 2-like isoform 3 [Gallus
gallus]
Length = 320
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 149/323 (46%), Gaps = 74/323 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISP-------AYN---------------------------------YSAIRP 239
S SP AY +S I
Sbjct: 176 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGIES 235
Query: 240 AQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE 293
+ P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 236 SSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 295
Query: 294 QKHRHIQFGGSAQQVALAKQRVD 316
R + GSA ++LA+ ++
Sbjct: 296 STDRQVTITGSAASISLAQYLIN 318
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 239 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 298
Query: 95 RVIIIS 100
R + I+
Sbjct: 299 RQVTIT 304
>gi|108862919|gb|ABA99242.2| FLK, putative, expressed [Oryza sativa Japonica Group]
gi|222617409|gb|EEE53541.1| hypothetical protein OsJ_36750 [Oryza sativa Japonica Group]
Length = 517
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 7/170 (4%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FRI+VP++++G VIG++G I+K+ EE++A IK+ D +R ++IS+KD D +
Sbjct: 116 VFRILVPAQKVGAVIGRKGEFIKKMCEESRARIKVLDGPPGVPDRAVMISAKDEPDAPLP 175
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I D S+ + AAG V RLL+ SQAG LIG G I+ ++
Sbjct: 176 PAVDGLLRVHKRITDGLDGESDQPQRAAGTVGPT--RLLVPASQAGSLIGKQGATIKSIQ 233
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++S + IL +P A + DRVV+I G+ V A+ I + LR+
Sbjct: 234 DASKCVLRIL--ESVPPVALS--DDRVVEIQGEPLDVHKAVELIASHLRK 279
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG-KGEQKHRHIQFGGS 304
P + +T M + S +IG G++IS IR SGA I + G GE ++ GS
Sbjct: 384 PHGSSQITHSMQVPLSYADAVIGAAGASISYIRRHSGATISIQEGVPGEMT---VEISGS 440
Query: 305 AQQVALAKQRVDEYI 319
A QV A+Q + ++
Sbjct: 441 ASQVQTAQQLIKNFM 455
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R DG SD +RA R++VP+ Q G +IGK+G I+ I++ +K ++I ++
Sbjct: 186 KRITDGLDGESDQPQRAAGTVGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRILES 245
Query: 89 ---IARHEERVIIISSKDND 105
+A ++RV+ I + D
Sbjct: 246 VPPVALSDDRVVEIQGEPLD 265
>gi|334350022|ref|XP_003342305.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
Length = 320
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 149/323 (46%), Gaps = 74/323 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISP-------AYN---------------------------------YSAIRP 239
S SP AY +S I
Sbjct: 176 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIES 235
Query: 240 AQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE 293
+ P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 236 SSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 295
Query: 294 QKHRHIQFGGSAQQVALAKQRVD 316
R + GSA ++LA+ ++
Sbjct: 296 STDRQVTITGSAASISLAQYLIN 318
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 239 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 298
Query: 95 RVIIIS 100
R + I+
Sbjct: 299 RQVTIT 304
>gi|326488325|dbj|BAJ93831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FR++V ++++G +IG++G I+++ +E+KA IKI D ER ++I
Sbjct: 110 DTKWPGWPGESVFRVLVSTQKVGALIGRKGEFIKRMCDESKARIKILDGPPGVPERAVMI 169
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D +V A + L ++ I D +SE + G A RLL+ SQAG LI
Sbjct: 170 SAKDEPDALVPPAIDVLLRVHNRIT--DGLDSETDQAQKGASPAGPTRLLVPASQAGSLI 227
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ ++++S + IL N P+ A DRVV+I G+ V A+ I N LR
Sbjct: 228 GKQGTTIKSIQDASKCALRILE-NVPPV---ALNDDRVVEIQGEPHDVHKAVELIANHLR 283
Query: 219 E 219
+
Sbjct: 284 K 284
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 221 PPRQV--ISISPAYNYSAI-RPAQPFVEPTSADY--------VTFEMLISESLVGGLIGR 269
PP V + P Y S+ R A P PTS + ++ +M + S +IG
Sbjct: 352 PPPNVHHVEKQPHYGISSYGRDANPTAAPTSGNQHLSHGSSQLSQKMQVPLSYADAVIGS 411
Query: 270 CGSNISRIRNESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
G+NIS IR SGA I + G GE ++ GSA QV A+Q + ++
Sbjct: 412 AGANISYIRKHSGATISIQEGVPGEMT---VEIAGSASQVQTAQQLIKNFM 459
>gi|118485588|gb|ABK94645.1| unknown [Populus trichocarpa]
Length = 294
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 23/215 (10%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ +++ R++ P+ IG VIGK G I +IR+E+ ATIK+ ++A ++ +I
Sbjct: 20 SAPRDELASKEFSLRVVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSVAEGDDCLIT 79
Query: 99 ISSK---DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
IS+K D+ + +A LQ + ++ D + + T RLL+ S+ G
Sbjct: 80 ISAKEIYDHYSPTIEAAVRLQPRCSEKMERDSG-----------LISFTTRLLVPSSRIG 128
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
CL+G G I+++R + A I I LP AS + D +VQI+GD+ +AL++I
Sbjct: 129 CLLGKGGAIIDEMRKLTKAIIRIPRKENLPKVAS--DDDEMVQIAGDLDVAKDALIQISR 186
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+LR N V A SAI P P++ P SA+
Sbjct: 187 RLRAN----VFDREGA--MSAILPVLPYL-PVSAE 214
>gi|147789387|emb|CAN73316.1| hypothetical protein VITISV_043333 [Vitis vinifera]
Length = 511
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 32/196 (16%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ S P R K D ++R + P ++IG +I + +++ R +TK I I D ++ EE
Sbjct: 280 VSSSSPTSRLK--DTIYRYLCPGKKIGSIIRRGWKIVKQQRVDTKPKISIGDTVSGCEEH 337
Query: 96 VIIISS-------KDNDN-VVSDAENALQQIAALILKDD--DSNSEASKVAAGHVAANTI 145
V+ I + DN N VS +N L ++ ++ D+ D N E +
Sbjct: 338 VVTIYNFSIESNVFDNSNTFVSPTQNVLFRVHDRVISDEVHDENFEEA------------ 385
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
SQ GC+IG GQ I+ +R+ SGA I IL + LP + SD+++QISG+
Sbjct: 386 ------SQIGCVIGKGGQIIQSIRSESGAQIRILKDDHLP--SRVLSSDKLIQISGEPSL 437
Query: 206 VLNALVEIGNQLRENP 221
V+ AL +I ++L +NP
Sbjct: 438 VMKALYQIASRLHDNP 453
>gi|334350025|ref|XP_003342306.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
gi|444513888|gb|ELV10473.1| Poly(rC)-binding protein 2 [Tupaia chinensis]
Length = 307
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 148/310 (47%), Gaps = 61/310 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISP-------AYN----YSAIRP----------AQPFVEPT----------- 247
S SP AY Y+ +P Q T
Sbjct: 176 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLD 235
Query: 248 -SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAA 295
Query: 307 QVALAKQRVD 316
++LA+ ++
Sbjct: 296 SISLAQYLIN 305
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|297735516|emb|CBI17956.3| unnamed protein product [Vitis vinifera]
Length = 433
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 12/193 (6%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
K+ DG G K + +FR+++P +++G +IG++G I+K+ EETKA IKI D
Sbjct: 20 KQGLNDGS--GGGEKWPGWPGENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILD 77
Query: 88 AIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ER +++S+K+ D ++ A + L ++ I+ D S+ A V + R
Sbjct: 78 GPPGTSERAVMVSAKEEPDAPIAPAIDGLLRVHKCIM---DVESDVPSAAGVMV---STR 131
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LL+ +QAG LIG G I+ ++ +S + +L N LPL A ++D VV+I G+ +V
Sbjct: 132 LLVVAAQAGSLIGKQGATIKSIQEASNCIVRVLGEN-LPLFAL--QNDTVVEIQGEPASV 188
Query: 207 LNALVEIGNQLRE 219
A+ I + LR+
Sbjct: 189 HKAVELIASNLRK 201
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T M + S +IG G NIS +R SGA I + KG ++ GS QV A
Sbjct: 308 ITQYMQVPLSYADAVIGASGVNISYVRRTSGATIAIEETKGVPGEMTVEINGSVSQVQTA 367
Query: 312 KQRVDEYI 319
+Q + ++
Sbjct: 368 QQLIQNFM 375
>gi|354490193|ref|XP_003507244.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cricetulus
griseus]
Length = 331
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 151/329 (45%), Gaps = 74/329 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISP-------AYN---------------------------------YSAIRP 239
S SP AY +S I
Sbjct: 176 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIES 235
Query: 240 AQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE 293
+ P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK
Sbjct: 236 SSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEG 295
Query: 294 QKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 296 STDRQVTITGSAASISLAQYLINVRLSSE 324
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IK A+ + +
Sbjct: 239 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTD 298
Query: 95 RVIIIS 100
R + I+
Sbjct: 299 RQVTIT 304
>gi|359479585|ref|XP_002275698.2| PREDICTED: uncharacterized protein LOC100266515 [Vitis vinifera]
Length = 858
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 10/170 (5%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVS 109
+FR+++P +++G +IG++G I+K+ EETKA IKI D ER +++S+K+ D ++
Sbjct: 41 VFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVSAKEEPDAPIA 100
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + L ++ I+ D S+ A V+ RLL+ +QAG LIG G I+ ++
Sbjct: 101 PAIDGLLRVHKCIM---DVESDVPSAAGVMVST---RLLVVAAQAGSLIGKQGATIKSIQ 154
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S + +L N LPL A ++D VV+I G+ +V A+ I + LR+
Sbjct: 155 EASNCIVRVLGEN-LPLFAL--QNDTVVEIQGEPASVHKAVELIASNLRK 201
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
+T M + S +IG G NIS +R SGA I + KG ++ GS QV A
Sbjct: 733 ITQYMQVPLSYADAVIGASGVNISYVRRTSGATIAIEETKGVPGEMTVEINGSVSQVQTA 792
Query: 312 KQRVDEYI 319
+Q + ++
Sbjct: 793 QQLIQNFM 800
>gi|417399108|gb|JAA46584.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 333
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 153/332 (46%), Gaps = 77/332 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQVI-------SISP-------AYN---------------------------------YS 235
+ V S SP AY +S
Sbjct: 176 KGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 235
Query: 236 AIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG 290
I + P V+ A T E+ I +L+G +IGR G+NI+ IR SGA IK+
Sbjct: 236 GIESSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP 295
Query: 291 KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 296 VEGSSGRQVTITGSAASISLAQYLINARLSSE 327
>gi|255584811|ref|XP_002533123.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223527086|gb|EEF29268.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 405
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 16/212 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ +++ RI+ P+ IG VIGK G I +IR+E+ A IK+ + A ++ +I
Sbjct: 144 SAPRDELSSKEFSLRIVCPTGNIGGVIGKGGTIINQIRQESGAVIKVDSSTAEGDDCLIT 203
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+S+K+ D + + AA+ L+ S A + + T RLL+ S+ GCL+
Sbjct: 204 VSAKE----FFDDQYSPTIEAAIRLQPRCSEKIARDSG---LISFTTRLLVPTSRIGCLL 256
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I ++R + A I IL + LP AS E D +VQISGD+ +AL + +LR
Sbjct: 257 GKGGVIINEMRKVTKANIRILGKDNLPKVAS--EDDEMVQISGDLDVAKDALTHVSRRLR 314
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
N + ++ S P P++ P SAD
Sbjct: 315 ANAFDREGAV------STFLPVLPYL-PVSAD 339
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 48/199 (24%)
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
DDDS GH T RL++ Q GC+IG GQ ++ +R+ +GA I IL L
Sbjct: 4 DDDSE-------GGHQV--TARLIVPSDQIGCIIGKGGQIVQNIRSETGAQIRILKDEHL 54
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ-------------------- 224
P CA + +D +VQISG+V V AL +I +L ENP R
Sbjct: 55 PPCALS--TDELVQISGEVAVVKKALYQIATRLHENPSRTQHLLFSAVPNVYPATGSLIG 112
Query: 225 -----VISISP-----------AYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIG 268
++ I+P A ++S + P E +S ++ + ++ +GG+IG
Sbjct: 113 PTGAPIVGIAPLMSTYGGYKGDAGDWSRSLYSAPRDELSSKEF-SLRIVCPTGNIGGVIG 171
Query: 269 RCGSNISRIRNESGAMIKV 287
+ G+ I++IR ESGA+IKV
Sbjct: 172 KGGTIINQIRQESGAVIKV 190
>gi|42573788|ref|NP_974990.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010500|gb|AED97883.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 824
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + + EER+I +++ +N
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S + Q+ LI + + G ++ T RL++ SQ GC++G G + +
Sbjct: 510 QS---SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSE 566
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R ++GA I IL Q P C S E+D+VVQI+G+ P V A+ I ++LR++
Sbjct: 567 MRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLRDS 617
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
V GH A RLL S G +IG SG I++L+ S+GA I + P + D
Sbjct: 42 VPVGHAA---FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEP-------PSGSPD 91
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS---AIRPAQPFVEPTSADY 251
RV+ I + + V++G N + + + I+ + +D
Sbjct: 92 RVITIIAQADS--KSRVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT 149
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V +L S G +IG+ G + IR E+G I +
Sbjct: 150 VVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
>gi|357485457|ref|XP_003613016.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355514351|gb|AES95974.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 596
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 55/295 (18%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
+ V+FR++ + G VIGK+G ++ T A+I A + ++EER++ IS+ +
Sbjct: 269 KGSGHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASIVFAPPLGQYEERIVTISAFE 328
Query: 104 N-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
N ++ S A++A+ + I +D N A + T RLLI S L G G
Sbjct: 329 NLESSNSPAQDAVILVFTRIAEDHIRNGFQPATAVE--SPVTARLLITTSTLHLLTGNEG 386
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
Q I +LR SGA I +L +P +A ++D VVQI+G V NAL +I + +R+NP
Sbjct: 387 QVISELRQVSGADIQLLHGEPIP---NASDNDVVVQITGGYRCVENALRKITSIIRDNPL 443
Query: 223 RQVI----SISPAY--NYSAIR--------PAQPF------------------------- 243
+ I P++ N +R + PF
Sbjct: 444 TNELLAEAKIKPSFPLNKDTVRSKFITRKKSSFPFARVPPQNAGVYQAKKVTENGESHTN 503
Query: 244 ----VEPTSADYV------TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
VEP + V T E+++SE + G + G G N+ RIR SGA + V+
Sbjct: 504 LIENVEPGRGNIVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVF 558
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 137/332 (41%), Gaps = 58/332 (17%)
Query: 10 NPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEG 69
+PT S E H +R + + P + + FR++ S +G +IG G
Sbjct: 3 DPTFSAAVETTDHHHPQPPLKRNNRK----RPVFKLLPGQIAFRLVCHSSTVGGLIGSSG 58
Query: 70 HRIQKIREETKATIKIADAIARHEERVIIISSKDNDN---VVSDAE----NALQQIAALI 122
+ ++R ET I DA+ ++RVI++ +D V+ D E NA + + +
Sbjct: 59 SIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVF 118
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
D E+ K G V +LL SQ G ++G G+NI +RN+SG+ I +
Sbjct: 119 --DRVWGLESEKGGNGEVYG---KLLAHSSQVGAIVGKGGKNISNIRNNSGSNIRVCPA- 172
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI-----------SPA 231
P CA+ E ++ I+G+ AV AL+ + L++ PP +S+ S +
Sbjct: 173 --PHCAAKDE--ELILITGESLAVKKALIYVSYCLQDCPPMGKVSLNTPPTINSSDRSTS 228
Query: 232 YNYSAIRPAQPFVEPT--------------------------SADYVTFEMLISESLVGG 265
Y + + P P+ S V F +L S ++ G
Sbjct: 229 YTHEDLFPHLNSWLPSMEGLSINDASKQTTNANGNSSLDSKGSGHAVVFRLLCSNNVAGS 288
Query: 266 LIGRCGSNISRIRNESGAMIKVYGGKGEQKHR 297
+IG+ GS + +GA I G+ + R
Sbjct: 289 VIGKKGSIVRTFEIRTGASIVFAPPLGQYEER 320
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 115/297 (38%), Gaps = 77/297 (25%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVII------- 98
+V +++ S Q+G ++GK G I IR + + I++ A A+ EE ++I
Sbjct: 133 EVYGKLLAHSSQVGAIVGKGGKNISNIRNNSGSNIRVCPAPHCAAKDEELILITGESLAV 192
Query: 99 ---------------------------ISSKD------NDNVVSDAENALQQIAALILKD 125
I+S D ++++ + L + L + D
Sbjct: 193 KKALIYVSYCLQDCPPMGKVSLNTPPTINSSDRSTSYTHEDLFPHLNSWLPSMEGLSIND 252
Query: 126 -----DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
++N +S + G A RLL + + AG +IG G + +GA+IV A
Sbjct: 253 ASKQTTNANGNSSLDSKGSGHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASIV-FA 311
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ------VISISPAYNY 234
P PL +R+V IS N N P Q I+ +
Sbjct: 312 P---PL---GQYEERIVTISA-----------FENLESSNSPAQDAVILVFTRIAEDHIR 354
Query: 235 SAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
+ +PA P VT +LI+ S + L G G IS +R SGA I++ G+
Sbjct: 355 NGFQPATAVESP-----VTARLLITTSTLHLLTGNEGQVISELRQVSGADIQLLHGE 406
>gi|363747267|ref|XP_423701.3| PREDICTED: poly(rC)-binding protein 2-like isoform 4 [Gallus
gallus]
Length = 307
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 148/310 (47%), Gaps = 61/310 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISP-------AYN----YSAIRP---------AQPFVEP------------- 246
S SP AY Y+ +P Q P
Sbjct: 176 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSAGLD 235
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAA 295
Query: 307 QVALAKQRVD 316
++LA+ ++
Sbjct: 296 SISLAQYLIN 305
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|22328051|ref|NP_201244.2| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010501|gb|AED97884.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 857
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + + EER+I +++ +N
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S + Q+ LI + + G ++ T RL++ SQ GC++G G + +
Sbjct: 510 QS---SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSE 566
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R ++GA I IL Q P C S E+D+VVQI+G+ P V A+ I ++LR++
Sbjct: 567 MRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLRDS 617
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVV------------CRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
V GH A RLL S G +IG SG I++L+ S+GA I + P + D
Sbjct: 42 VPVGHAA---FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEP-------PSGSPD 91
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS---AIRPAQPFVEPTSADY 251
RV+ I + + V++G N + + + I+ + +D
Sbjct: 92 RVITIIAQADS--KSRVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT 149
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V +L S G +IG+ G + IR E+G I +
Sbjct: 150 VVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
>gi|334188619|ref|NP_001190612.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010502|gb|AED97885.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 866
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + + EER+I +++ +N
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S + Q+ LI + + G ++ T RL++ SQ GC++G G + +
Sbjct: 510 QS---SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSE 566
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R ++GA I IL Q P C S E+D+VVQI+G+ P V A+ I ++LR++
Sbjct: 567 MRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLRDS 617
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
V GH A RLL S G +IG SG I++L+ S+GA I + P + D
Sbjct: 42 VPVGHAA---FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEP-------PSGSPD 91
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS---AIRPAQPFVEPTSADY 251
RV+ I + + V++G N + + + I+ + +D
Sbjct: 92 RVITIIAQADS--KSRVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT 149
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V +L S G +IG+ G + IR E+G I +
Sbjct: 150 VVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
>gi|255537898|ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223550715|gb|EEF52201.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 679
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 120/210 (57%), Gaps = 12/210 (5%)
Query: 37 EGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
EG P R A D+L FR++ ++G VIGK G I+ +++ET IK+ + ++ E+R
Sbjct: 307 EGGMPGRMRPAPDMLTFRLLCLDEKVGGVIGKGGAIIKTLQQETGCEIKVLEGVSDSEDR 366
Query: 96 VIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
+I+IS + D+ +S A++A+ ++ I + A + G A RLL++ +Q
Sbjct: 367 IILISGPAHPDDRISAAQDAVLRVQTRIAR-------ALPLPEGKEKAVIGRLLVSSNQI 419
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCL+G G + ++R S+GA I IL +Q+P CAS E++ VVQI+G+ V AL++I
Sbjct: 420 GCLLGKGGAIMAEMRKSTGAYIRILGKDQIPKCAS--ENEEVVQINGEHEVVQEALLQIT 477
Query: 215 NQLRENPPRQVI-SISPAYNYSAIRPAQPF 243
+LR + R V SI N + + A PF
Sbjct: 478 TRLRNHFFRDVFPSIDHPSNPAFLDQAPPF 507
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 131/285 (45%), Gaps = 72/285 (25%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS-KDNDNVV 108
V+FRI+ P+ + G +IGK G I +IR+ET A +++ + + +ERV+II++ D + V
Sbjct: 36 VVFRILCPASKTGGIIGKGGAIISQIRQETGAKVRVEETVPGSDERVVIIAAGSDKEMEV 95
Query: 109 SDAE----------------------------------------------NALQQIAALI 122
++AE ++LQ+ L+
Sbjct: 96 NNAEQNRGDSDDKEPNVGEESNGKQAGSDEDDENKETVSVEHSTKSVRETSSLQKALVLV 155
Query: 123 LKD--------DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
+ D+ N E K + +T+RLL+ SQ GCL+G G I+++ SGA
Sbjct: 156 FERMLEAEPEMDEGNEEKKKPSM-----STLRLLVLSSQVGCLLGKGGSVIKQMSAESGA 210
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP---- 230
I IL ++LP+CAS +D +VQI+G+V A+ AL + QL ENPP+ + P
Sbjct: 211 QIRILPRDKLPICASP--TDELVQIAGEVDAIRKALQSVAQQLLENPPKDPEAYPPISTG 268
Query: 231 ----AYNYSAIRPA--QPFVEPTSADYVTFEMLISESLVGGLIGR 269
++ + RP P +A T+ E GG+ GR
Sbjct: 269 PSSHSFGHPLPRPEAYPPPYHSFNARGTTYGAGPREFHEGGMPGR 313
>gi|412992928|emb|CCO16461.1| predicted protein [Bathycoccus prasinos]
Length = 703
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 109/188 (57%), Gaps = 11/188 (5%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-ARHEERVIII 99
P+ + +L+R++ P+ + G VIGK G ++++++ ++ A IK+ + + ERVI I
Sbjct: 256 PENHGATRTLLYRLLCPNARAGSVIGKNGEKVKQLQRDSGAKIKVEPPVDSTIAERVIAI 315
Query: 100 SSKDNDN--VVSDAENALQQIAALILKDDDSNSE--ASKVAAGHVAANTIRLLIAGSQAG 155
++D D+ V + ++ AL +I I+ D + N+ A++ GH+ IRLL+ SQ
Sbjct: 316 EAQDVDDPTVWAPSQIALLRIVETIVLDAERNTTIGAAEENNGHI---VIRLLLPSSQIR 372
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-VPAVLNALVEIG 214
+IG G IE++R SG+ + +L ++ P C A +D V+QIS + + V +AL I
Sbjct: 373 NVIGRFGNVIERIRVGSGSHVRVLPSSETPRC--AKRNDEVLQISAESMENVASALAMIT 430
Query: 215 NQLRENPP 222
QLR +PP
Sbjct: 431 TQLRLDPP 438
>gi|9759415|dbj|BAB09870.1| unnamed protein product [Arabidopsis thaliana]
Length = 833
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + + + EER+I +++ +N
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPEC 509
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S + Q+ LI + + G ++ T RL++ SQ GC++G G + +
Sbjct: 510 QS---SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSE 566
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R ++GA I IL Q P C S E+D+VVQI+G+ P V A+ I ++LR++
Sbjct: 567 MRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLRDS 617
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
V GH A RLL S G +IG SG I++L+ S+GA I + P + D
Sbjct: 42 VPVGHAA---FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEP-------PSGSPD 91
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS---AIRPAQPFVEPTSADY 251
RV+ I + + V++G N + + + I+ + +D
Sbjct: 92 RVITIIAQADS--KSRVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT 149
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V +L S G +IG+ G + IR E+G I +
Sbjct: 150 VVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
>gi|242045198|ref|XP_002460470.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
gi|241923847|gb|EER96991.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
Length = 371
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 98/167 (58%), Gaps = 13/167 (7%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV-SDAE 112
+I+ + +G +IGK G I+ ++ ET A IKI + +A +ERV+ IS+++N +++ S A+
Sbjct: 1 MIILNEMVGSIIGKGGSTIRALQSETGACIKILELVADSDERVVAISARENSDMMHSPAQ 60
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+A+ ++ + I SEAS + A RLL+ GCL+G G I ++R +
Sbjct: 61 DAVVRVYSRI-------SEASMDRSSPTPA---RLLVPSQHIGCLLGKGGSIITEMRKIT 110
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
GA+I I Q+P C A +D +VQ++G ++ +AL+ I ++R+
Sbjct: 111 GASIRIFGNEQIPRC--AQRNDEMVQVTGSFQSIQDALLHITGRIRD 155
>gi|417398902|gb|JAA46484.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 320
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 153/319 (47%), Gaps = 64/319 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQVI-------SISP-------AYN----YSAIRP----------AQPFVEPT------- 247
+ V S SP AY Y+ +P Q T
Sbjct: 176 KGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 235
Query: 248 ----SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGG 303
++ T E+ I +L+G +IGR G+NI+ IR SGA IK+ R + G
Sbjct: 236 ASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG 295
Query: 304 SAQQVALAKQRVDEYIYSQ 322
SA ++LA+ ++ + S+
Sbjct: 296 SAASISLAQYLINARLSSE 314
>gi|326511144|dbj|BAJ87586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 450
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR++VP ++G +IG++G I+++ EETKA +++ + ER++++S+K++ +
Sbjct: 50 DNVFRMVVPVLKVGSIIGRKGELIKRLVEETKARVRVLEGPVGATERIVLVSAKEDPGLE 109
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAA--GHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A +AL ++ + D +E ++ +A G AA RL++ G+QA LIG G +I
Sbjct: 110 LPPAMDALIRVFKRVNGISDGAAEGTQTSAAPGVCAA---RLVVPGAQAINLIGKQGASI 166
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ +GATI +++ ++ + +R+V+I G+ VL AL + N LR+
Sbjct: 167 KAIQEGTGATIRVISVDERDRPFYVTDDERIVEIQGETEKVLKALQAVSNHLRK 220
>gi|410920039|ref|XP_003973491.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 327
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 147/323 (45%), Gaps = 67/323 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIDKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTAHSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AY-------------NYSAIRP-----------AQPFVEPT-- 247
S SP AY + +AI P PF T
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDSSSAAISPQLSKLHQLAMQQGPFPMATCN 236
Query: 248 --------SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
SA + EM I L+G +IGR G+ IS IR SGA IK+ R +
Sbjct: 237 QGFTGMDASAQACSHEMTIPNDLIGCIIGRQGAKISEIRQMSGAQIKIANPVDGSTDRQV 296
Query: 300 QFGGSAQQVALAKQRVDEYIYSQ 322
GS + LA+ + + S+
Sbjct: 297 TITGSPASIGLAEYLIKARLSSE 319
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 244 ASAQACSHEMTIPNDLIGCIIGRQGAKISEIRQMSGAQIKIANPVDGSTDRQVTIT 299
>gi|209156062|gb|ACI34263.1| PolyrC-binding protein 2 [Salmo salar]
Length = 318
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 151/315 (47%), Gaps = 59/315 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AY----NYSAIRP-----------AQPF-VEPT---------- 247
S SP AY ++ +P PF + P
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPMGPNNPGFQGGMDA 236
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + EM I L+G +IGR GS I+ IR SGA IK+ R + GSA
Sbjct: 237 SAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVEGSADRQVTITGSAAS 296
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 ISLAEYLINARLSSE 311
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVEGSADRQVTIT 291
>gi|413935391|gb|AFW69942.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 468
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 160/320 (50%), Gaps = 42/320 (13%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
GE E + P+ +FR++VP+ ++G +IG+ G I+++ +ET+A +++ D A H
Sbjct: 82 GEGEDARPRWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLD--APHG 139
Query: 94 E----RVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ R++++S+++ + +S A NA +I I + +D NS+ + +A +++RLL
Sbjct: 140 DGAFSRIVLVSAREEVEAELSPAMNAAIKIFKHINEIEDINSDGTLMAPA-PEISSVRLL 198
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES--DRVVQISGDVPAV 206
+ +QA +IG G I+ ++ S+G+T+ I+ ++L +HE+ +R+V+I+G V
Sbjct: 199 VPFAQALHVIGKQGVTIKSIQESTGSTVRIMDEDEL----LSHETMGERIVEINGASLEV 254
Query: 207 LNALVEIGNQLREN-PPRQVISISPAYNYSAIRPAQ----------------PFVEPTSA 249
LNAL + LR+ V+ + N +P Q F P S
Sbjct: 255 LNALKLVLGLLRKFLVDHGVLHLFERKNPEVAQPQQSRGNPKGSRFLYGHDPSFHAPYSR 314
Query: 250 DY----------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
D +T M I + VG +IG G N+ IR+ SGA++ V G + +
Sbjct: 315 DLSQPADSLITKITRTMQIPLADVGEIIGVRGENVELIRSVSGAVV-VLEKIGNGQEVRV 373
Query: 300 QFGGSAQQVALAKQRVDEYI 319
G+ QV A Q V E +
Sbjct: 374 MIEGTPSQVQTAHQLVQEAL 393
>gi|255551350|ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223544094|gb|EEF45619.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 537
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 37/200 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++RI+ PSR+IG VIGK G I+ +REET+A I +AD + +ERVIII S
Sbjct: 44 DTVYRILCPSRKIGGVIGKGGGIIKGLREETQAKITVADPVPGSDERVIIIYSSPEKISR 103
Query: 102 --KDNDNVVSD-----------AENALQQIAALILKDD-------DSNSEASKVAAGHVA 141
D++++ + A++AL ++ I+++D D ++E V A
Sbjct: 104 NHNDHEDLTMENEQDIMEPYCAAQDALLKVHDRIVEEDLFGGMTSDDDNENGFVTA---- 159
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
RLL+ + GCL+G G I++LR+ +GA I +L + LP CA + +D +VQIS
Sbjct: 160 ----RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADHLPTCAMS--TDELVQISA 213
Query: 202 DVPAVLNALVEIGNQLRENP 221
AL E+ L +NP
Sbjct: 214 KPDVAKKALYEVSTLLHQNP 233
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 13/147 (8%)
Query: 72 IQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
++ ++++T A+I + DA A +ERVI +S+ + N Q IL+ + S+
Sbjct: 335 VKVVQQDTGASIHVEDASAESDERVIRVSASEA------LWNPRSQTIDAILQLQNKTSD 388
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
S+ G + T RLL+ S+ GC++G GQ I ++R + A I + + ++ P CAS
Sbjct: 389 FSE--KGTI---TTRLLVPSSKVGCILGQGGQVINEMRRRTQADIRVYSKDEKPKCAS-- 441
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLR 218
E + +VQISG +AL EI ++LR
Sbjct: 442 EDEELVQISGKFGVAKDALAEIASRLR 468
>gi|426218401|ref|XP_004003435.1| PREDICTED: poly(rC)-binding protein 3 isoform 4 [Ovis aries]
Length = 332
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 147/328 (44%), Gaps = 69/328 (21%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV-ISI 228
S+GA + + A + LP + ++R V ISG A++ + +I + E+P + V + +
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPRKGVTVVV 178
Query: 229 SP-------------AYN----YSAIRP------------------------------AQ 241
+P AY Y+ P A
Sbjct: 179 APKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGTDRAV 238
Query: 242 PFVEP------TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK 295
PFV S T E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 239 PFVRSPWACLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSS 298
Query: 296 HRHIQFGGSAQQVALAKQRVDEYIYSQL 323
R I G+ ++LA+ ++ + S++
Sbjct: 299 ERQITITGTPANISLAQYLINARLTSEV 326
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|359488265|ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
gi|296087281|emb|CBI33655.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 106/200 (53%), Gaps = 37/200 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++RI+ PS++IG VIGK G ++ +REET+A I +AD++ +ERVIII S
Sbjct: 44 DTVYRILCPSKKIGGVIGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSAPTKNPK 103
Query: 102 -------------KDNDNVVSDAENALQQIAALILKDD-------DSNSEASKVAAGHVA 141
+D+ A++AL ++ I+++D + ++E + V
Sbjct: 104 EHDSNEDPEMEEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVV------ 157
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
T RLL+ + GCL+G G I++LR+ +GA I +L LP CA + SD +VQISG
Sbjct: 158 --TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMS--SDELVQISG 213
Query: 202 DVPAVLNALVEIGNQLRENP 221
AL E+ L +NP
Sbjct: 214 KPAVAKKALYEVSTLLHQNP 233
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 13/167 (7%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+I+ P+ +IG VIGK G ++++++ET A+I + DA+A EERVI +SS
Sbjct: 316 MKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAESEERVIRVSS------FEAL 369
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
N Q IL+ + SE S T RLL+ S+ GC++G G I ++R
Sbjct: 370 WNPRSQTIEAILQLQNKTSEYSD-----KGGMTTRLLVPSSKVGCILGQGGHVINEMRRR 424
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
+ A I + + P CAS + + +VQISG+ +AL EI ++LR
Sbjct: 425 TQADIRVYSKEDKPKCAS--DDEELVQISGNFGVAKDALAEIASRLR 469
>gi|432906521|ref|XP_004077571.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 434
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 60/312 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSSPERIVTITGPTEGIF-- 72
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A IA +D + S V + T+RL+ GSQ G LIG G I+++R
Sbjct: 73 ---RAFSMIAQKFEEDITAAMTNSNVTSK--PPVTLRLVFPGSQCGSLIGKGGSKIKEIR 127
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI--- 226
++GA + + A + LP ++R V ISG A+ + I + + E+PP+
Sbjct: 128 ETTGAQVQV-AGDMLP-----DSTERAVTISGTPQAITQCVRHICSVMLESPPKGATIPY 181
Query: 227 --SISPAYNYSAIRP---AQPFVEP----------------------------------- 246
I PA ++ + P A F P
Sbjct: 182 RPKILPAGAHAVLAPQHSAHAFAIPGQYAFAHQDLTKLHQLAMQHIPLPSLGQSNPTFPG 241
Query: 247 --TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGS 304
+SA T E+ I L+G +IGR GS I+ IR SGA IK+ R + GS
Sbjct: 242 LDSSASTSTQELAIPNDLIGCIIGRQGSKINEIRQVSGAHIKIASATDGSAVRQVTITGS 301
Query: 305 AQQVALAKQRVD 316
+++A+ ++
Sbjct: 302 PASISIAQYLIN 313
>gi|156388117|ref|XP_001634548.1| predicted protein [Nematostella vectensis]
gi|156221632|gb|EDO42485.1| predicted protein [Nematostella vectensis]
Length = 338
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 137/307 (44%), Gaps = 54/307 (17%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
K R + +++ ++I+ + IG +IGKEG I++ R+E+ A I I+D ER++ ++
Sbjct: 19 KGRGHSSNLVLKMIMQGKDIGSIIGKEGSTIKQFRQESNAHINISD--GSTPERIVSVTG 76
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
D VV+ A I + + SNS+++ T+RL++ GSQ G +IG
Sbjct: 77 T-KDAVVT----AFALIGQKLEDELKSNSKSNT-----TPPVTLRLIVPGSQCGSIIGKG 126
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R SGA++V+ A LP S+R V +SG A+ + + + E P
Sbjct: 127 GAKIKEIREVSGASVVV-AGEFLP-----GSSERAVTLSGTPEALETCIDLLCGVMIEFP 180
Query: 222 PR-QVISISP---AYNYSAIRPAQPFVEP------------------------------- 246
PR + +P + P Q F P
Sbjct: 181 PRGHPMPYTPHKLQQQFGFYGPPQGFGYPGPYGMPHAFPNGFMAGRGPYGGGRKGKGPPP 240
Query: 247 -TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
+ M I + VG +IG+ GS I+ IR SGA IK+ + R + G+A
Sbjct: 241 PQPGPITSHTMTILKGAVGSIIGQKGSYITGIRQMSGASIKIGDSENGDDKREVLITGTA 300
Query: 306 QQVALAK 312
+ V LA+
Sbjct: 301 EAVGLAQ 307
>gi|212723546|ref|NP_001131366.1| uncharacterized protein LOC100192689 [Zea mays]
gi|194691330|gb|ACF79749.1| unknown [Zea mays]
gi|413935393|gb|AFW69944.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 467
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 161/323 (49%), Gaps = 49/323 (15%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
GE E + P+ +FR++VP+ ++G +IG+ G I+++ +ET+A +++ D A H
Sbjct: 82 GEGEDARPRWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCDETRARVRVLD--APHG 139
Query: 94 E----RVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ R++++S+++ + +S A NA +I I + +D NS+ + +A +++RLL
Sbjct: 140 DGAFSRIVLVSAREEVEAELSPAMNAAIKIFKHINEIEDINSDGTLMAPA-PEISSVRLL 198
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES--DRVVQISGDVPAV 206
+ +QA +IG G I+ ++ S+G+T+ I+ ++L +HE+ +R+V+I+G V
Sbjct: 199 VPFAQALHVIGKQGVTIKSIQESTGSTVRIMDEDEL----LSHETMGERIVEINGASLEV 254
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRP--AQP------------------FVEP 246
LNAL + LR + ++ + + P AQP F P
Sbjct: 255 LNALKLVLGLLR----KFLVDHGVLHLFERKNPEVAQPQSRGNPKGSRFLYGHDPSFHAP 310
Query: 247 TSADY----------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKH 296
S D +T M I + VG +IG G N+ IR+ SGA++ V G +
Sbjct: 311 YSRDLSQPADSLITKITRTMQIPLADVGEIIGVRGENVELIRSVSGAVV-VLEKIGNGQE 369
Query: 297 RHIQFGGSAQQVALAKQRVDEYI 319
+ G+ QV A Q V E +
Sbjct: 370 VRVMIEGTPSQVQTAHQLVQEAL 392
>gi|348528761|ref|XP_003451884.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 317
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 151/314 (48%), Gaps = 58/314 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AY----NYSAIRP-----------AQPF-VEPT---------S 248
S SP AY ++ +P PF + P+ S
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPIAPSNQGFTGMDAS 236
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
A + EM I L+G +IGR G+ I+ IR SGA IK+ R + GS +
Sbjct: 237 AQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTITGSPASI 296
Query: 309 ALAKQRVDEYIYSQ 322
+LA+ ++ + S+
Sbjct: 297 SLAEYLINARLSSE 310
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 235 ASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTIT 290
>gi|356519471|ref|XP_003528396.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 591
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 9/199 (4%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
+ R V FR++ + ++G +IGK G I+ ++E T A I+I DA +RVI++S+
Sbjct: 17 RSRPYTTHVTFRLLCHASRVGAIIGKSGVLIKTLQEATGAKIRIEDAPPDSPDRVILVSA 76
Query: 102 KDNDNVVSDAENALQQIAALILKDD--DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
SD E + Q+A L + D D +E + G + RLL SQ G +IG
Sbjct: 77 PA---AASDGEVSTAQVALLKVFDRVLDVAAETAGTEVGDRVV-SCRLLADTSQVGAVIG 132
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+G+ +EK+R +G I +L LP C + SD +V++ G + +V ALV + L++
Sbjct: 133 KAGKVVEKIRMDTGCKIRVLNEG-LPACTA--PSDEIVEVEGQLTSVKKALVAVSGCLQD 189
Query: 220 NPPRQVISISPAYNYSAIR 238
PP ++ + +Y +R
Sbjct: 190 CPPPDRTKMTGSRHYEVVR 208
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 103/188 (54%), Gaps = 18/188 (9%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
DPK A Q+V FRII + ++G VIGK G ++ ++ E+ A I ++ E+R++ I
Sbjct: 262 DPK--ALQQEVTFRIICSNDRVGAVIGKGGSIVRALQNESGAIISFGPSLVECEDRLVTI 319
Query: 100 --SSKDNDNVVSDAENAL-----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
S ++ ++ S A+ A+ + + A + K D S+ T +L++ +
Sbjct: 320 TASEQNPESRYSPAQKAVVLVFSKSVEAGVEKGLDMGSKKESYV-------TAQLVVPSN 372
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
Q GCL+G G + ++R ++GA I ++ +++P C S ++D++VQISG+ V A+
Sbjct: 373 QVGCLLGKGGAIVSEMRKATGANIRVIGNDKVPKCVS--DNDQLVQISGEFSNVQAAIYN 430
Query: 213 IGNQLREN 220
+LR+N
Sbjct: 431 ATGRLRDN 438
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 34/153 (22%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL-APNQLPLCASAHESDRVVQIS-- 200
T RLL S+ G +IG SG I+ L+ ++GA I I AP P DRV+ +S
Sbjct: 26 TFRLLCHASRVGAIIGKSGVLIKTLQEATGAKIRIEDAPPDSP--------DRVILVSAP 77
Query: 201 -----GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
G+V AL+++ +++ + ++ A R V+
Sbjct: 78 AAASDGEVSTAQVALLKVFDRVLD------VAAETAGTEVGDR------------VVSCR 119
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+L S VG +IG+ G + +IR ++G I+V
Sbjct: 120 LLADTSQVGAVIGKAGKVVEKIRMDTGCKIRVL 152
>gi|432857624|ref|XP_004068722.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 317
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 151/314 (48%), Gaps = 58/314 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AY----NYSAIRP-----------AQPF-VEPT---------S 248
S SP AY ++ +P PF + P+ S
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPIAPSNQGFTGIDAS 236
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
A + EM I L+G +IGR G+ I+ IR SGA IK+ R + GS +
Sbjct: 237 AQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTITGSPASI 296
Query: 309 ALAKQRVDEYIYSQ 322
+LA+ ++ + S+
Sbjct: 297 SLAEYLINARLSSE 310
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 235 ASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTIT 290
>gi|426218399|ref|XP_004003434.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Ovis aries]
Length = 336
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 147/332 (44%), Gaps = 73/332 (21%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE----NPPR-- 223
S+GA + + A + LP + ++R V ISG A++ + +I + E +PPR
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLEVQSKSPPRGV 178
Query: 224 -QVISISPAYN---------------YSAIRP---------------------------- 239
+V++ PA Y+ P
Sbjct: 179 SRVVAPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGT 238
Query: 240 --AQPFVEP------TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
A PFV S T E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 239 DRAVPFVRSPWACLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAT 298
Query: 292 GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
R I G+ ++LA+ ++ + S++
Sbjct: 299 EGSSERQITITGTPANISLAQYLINARLTSEV 330
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|326922311|ref|XP_003207393.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 313
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 145/309 (46%), Gaps = 50/309 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D +NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDITNSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG--------------- 214
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAI 178
Query: 215 --------NQL--RENPPRQVISISPAYNYSAI-----RPAQPFVEPTSA-----DYVTF 254
+QL ++ P + +PA+ + AQ + +S T
Sbjct: 179 PHPDLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTH 238
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 239 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 298
Query: 315 VDEYIYSQL 323
++ + S++
Sbjct: 299 INARLTSEV 307
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ I+ + + S TS
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED-------ITNSMSNSTA---------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|334343559|ref|XP_003341817.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Monodelphis
domestica]
Length = 367
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 41/301 (13%)
Query: 36 IEGSDPKRRAKAQ---DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
+ GSDP + + + R+I+ +++G +IGK+G +++IRE++ A I I++
Sbjct: 1 MSGSDPGLEEEPELSITLTLRMIMHGKEVGSIIGKKGETVKRIREQSSARITISEG---- 56
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIA 150
S + ++ + A+ ++I D + G ++ T+RL+I
Sbjct: 57 -------SCPERITTITGSTGAVFHAVSMIAFKLDEDLCTGPPNGGSISKPPVTLRLVIP 109
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
SQ G LIG +G I+++R S I L L +++ + G V A
Sbjct: 110 ASQCGSLIGKAGTKIKEIRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGTVTPAE 169
Query: 211 VEIGNQLRENP-PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGR 269
V QL +P P S+ P + SA +Q E L+ L+G +IGR
Sbjct: 170 VSKLQQLSGHPVPFASPSVVPGLDPSAQTSSQ-------------EFLVPNDLIGCVIGR 216
Query: 270 CGSNISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQ 326
GS IS IR SGA IK+ G GE RH+ GS +ALA +Y+ + ++
Sbjct: 217 QGSKISEIRQMSGAHIKIGNQAEGSGE---RHVTITGSPVSIALA-----QYLITACLET 268
Query: 327 A 327
A
Sbjct: 269 A 269
>gi|147790774|emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]
Length = 668
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 106/200 (53%), Gaps = 37/200 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS------- 101
D ++RI+ PS++IG VIGK G ++ +REET+A I +AD++ +ERVIII S
Sbjct: 72 DTVYRILCPSKKIGGVIGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSAPTKNPK 131
Query: 102 -------------KDNDNVVSDAENALQQIAALILKDD-------DSNSEASKVAAGHVA 141
+D+ A++AL ++ I+++D + ++E + V
Sbjct: 132 EHNSNEDPEREEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVV------ 185
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
T RLL+ + GCL+G G I++LR+ +GA I +L LP CA + SD +VQISG
Sbjct: 186 --TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMS--SDELVQISG 241
Query: 202 DVPAVLNALVEIGNQLRENP 221
AL E+ L +NP
Sbjct: 242 KPAVAKKALYEVSTLLHQNP 261
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 13/167 (7%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+I+ P+ +IG VIGK G ++++++ET A+I + DA+A EERVI +SS
Sbjct: 344 MKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAESEERVIRVSS------FEAL 397
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
N Q IL+ + SE S T RLL+ S+ GC++G G I ++R
Sbjct: 398 WNPRSQTIEAILQLQNKTSEYSD-----KGGMTTRLLVPSSKVGCILGQGGHVINEMRRR 452
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
+ A I + + P CAS + + +VQISG+ +AL EI ++LR
Sbjct: 453 TQADIRVYSKEDKPKCAS--DDEELVQISGNFGVAKDALAEIASRLR 497
>gi|413935392|gb|AFW69943.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 397
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 164/332 (49%), Gaps = 45/332 (13%)
Query: 18 EPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
+P P V ++ GE E + P+ +FR++VP+ ++G +IG+ G I+++ +
Sbjct: 69 QPAPVTAVEATKK---GEGEDARPRWPGWPGASVFRLVVPADKVGGIIGRRGDTIKRLCD 125
Query: 78 ETKATIKIADAIARHEE----RVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEA 132
ET+A +++ D A H + R++++S+++ + +S A NA +I I + +D NS+
Sbjct: 126 ETRARVRVLD--APHGDGAFSRIVLVSAREEVEAELSPAMNAAIKIFKHINEIEDINSDG 183
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ +A +++RLL+ +QA +IG G I+ ++ S+G+T+ I+ ++L +HE
Sbjct: 184 TLMAPAP-EISSVRLLVPFAQALHVIGKQGVTIKSIQESTGSTVRIMDEDEL----LSHE 238
Query: 193 S--DRVVQISGDVPAVLNALVEIGNQLRENPPRQ-VISISPAYNYSAIRPAQ-------- 241
+ +R+V+I+G VLNAL + LR+ V+ + N +P Q
Sbjct: 239 TMGERIVEINGASLEVLNALKLVLGLLRKFLVDHGVLHLFERKNPEVAQPQQSRGNPKGS 298
Query: 242 --------PFVEPTSADY----------VTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
F P S D +T M I + VG +IG G N+ IR+ SGA
Sbjct: 299 RFLYGHDPSFHAPYSRDLSQPADSLITKITRTMQIPLADVGEIIGVRGENVELIRSVSGA 358
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRV 315
++ V G + + G+ QV A Q V
Sbjct: 359 VV-VLEKIGNGQEVRVMIEGTPSQVQTAHQLV 389
>gi|339258170|ref|XP_003369271.1| putative KH domain protein [Trichinella spiralis]
gi|316966532|gb|EFV51093.1| putative KH domain protein [Trichinella spiralis]
Length = 640
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 146/341 (42%), Gaps = 72/341 (21%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR +D + S +RR+ + R+++ S+ G VIGK G I+++R + A++ I D
Sbjct: 260 KRYYQDESLHYSRKRRRSGHEGPELRLLIASKSAGAVIGKGGENIKRLRSQYCASVNIPD 319
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
+ ERV+ IS N ++D ++ LI + DD S + +R+
Sbjct: 320 SST--PERVLNISCA-NVATLTDC------VSDLIPRLDDGKSGPQEAE--------VRM 362
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ SQAG +IG +G I++LR+ +GA I + + CA ++RV+Q SGD ++
Sbjct: 363 LVHQSQAGAIIGRAGFKIKELRDITGAGIRVYSE-----CAPL-STERVIQFSGDKEKIV 416
Query: 208 NALVEIGNQLRENPPRQVISISPAYNY--------------------------------- 234
NA+ + E P + V + A NY
Sbjct: 417 NAIRHVKEICEETPIKGVERLYDANNYDMSYALDYGGYTTDRNWRSNSTTRRSSGIHSSS 476
Query: 235 -----------SAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIR 278
+ I P Q + Y T ++ I + L G +IG+ G I+RIR
Sbjct: 477 PAASTPHFTGVNEISPMQALGYSPMSLYAENLIATVQVTIPKELGGTIIGKGGERINRIR 536
Query: 279 NESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
ESGA I V + R I G+ Q+ L + + + I
Sbjct: 537 EESGAQIVVDPPTPDSDERIITISGTTSQIKLGQYLLQQCI 577
>gi|28261405|gb|AAO37829.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 836
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + +A+ EER+I +++ +N
Sbjct: 462 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNALDDCEERLIAVTASENPEC 521
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S + Q+ LI + + G ++ T RL++ SQ GC++G G + +
Sbjct: 522 QS---SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSE 578
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R ++GA I IL Q P C S E+D+VVQI+ + P V A+ I ++LR++
Sbjct: 579 MRKTTGAAIQILKVEQNPKCIS--ENDQVVQITEEFPNVREAIFHITSRLRDS 629
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
V GH A RLL S G +IG SG I++L+ S+GA I + P + D
Sbjct: 42 VPVGHAA---FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEP-------PSGSPD 91
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS---AIRPAQPFVEPTSADY 251
RV+ I + + V++G N + + + I+ + +D
Sbjct: 92 RVITIIAQADS--KSRVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT 149
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V +L S G +IG+ G + IR E+G I +
Sbjct: 150 VVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
>gi|28261403|gb|AAO37828.1| HEN4 [Arabidopsis thaliana]
Length = 869
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
QDV+F+I+ + G VIG G ++ + ET A I + +A+ EER+I +++ +N
Sbjct: 462 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNALDDCEERLIAVTASENPEC 521
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S + Q+ LI + + G ++ T RL++ SQ GC++G G + +
Sbjct: 522 QS---SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSE 578
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+R ++GA I IL Q P C S E+D+VVQI+ + P V A+ I ++LR++
Sbjct: 579 MRKTTGAAIQILKVEQNPKCIS--ENDQVVQITEEFPNVREAIFHITSRLRDS 629
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 37/189 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVV-- 108
FR++ P +G VIGK G+ I+++++ T A I++ + + +RVI II+ D+ + V
Sbjct: 49 FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKL 108
Query: 109 -------------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
S A+ AL ++ L+ + DS++ RLL
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTV------------VCRLLT 156
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AG +IG GQ + +R +G I I N LP+CA D +V++ G+ AV A
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIEN-LPICADT--DDEMVEVEGNAIAVKKA 213
Query: 210 LVEIGNQLR 218
LV I L+
Sbjct: 214 LVSISRCLQ 222
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
V GH A RLL S G +IG SG I++L+ S+GA I + P + D
Sbjct: 42 VPVGHAA---FRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEP-------PSGSPD 91
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS---AIRPAQPFVEPTSADY 251
RV+ I + + V++G N + + + I+ + +D
Sbjct: 92 RVITIIAQADS--KSRVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDT 149
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V +L S G +IG+ G + IR E+G I +
Sbjct: 150 VVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
>gi|226528431|ref|NP_001149906.1| nucleic acid binding protein [Zea mays]
gi|195635381|gb|ACG37159.1| nucleic acid binding protein [Zea mays]
Length = 448
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR++VP ++G +IG++G I+++ EETKA ++I + ER++++S K D D
Sbjct: 45 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPDLE 104
Query: 108 VSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A +AL ++ + + D + + AA RLL+ G+QA LIG G I
Sbjct: 105 LPPAMDALMRVFKXVTGITDGAAEXTQAAATPDVCAA---RLLVPGAQAINLIGKQGATI 161
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ S+ ATI +++ ++ + +R+V+I GD VL AL + N LR+
Sbjct: 162 KAIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRK 215
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 113/274 (41%), Gaps = 41/274 (14%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++VP Q +IGK+G I+ I+E T ATI++ ++ HE + + + D E
Sbjct: 142 RLLVPGAQAINLIGKQGATIKAIQESTSATIRVI-SVDEHERPFYVTDDERIVEIQGDTE 200
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
L+ + A+ +N +R + L + + + RN
Sbjct: 201 KVLKALQAV--------------------SNHLRKFLVDHSVLPLFEKTNTTVSQDRNGD 240
Query: 173 GAT------IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
G + I NQLP D ++Q+ D P L E + + N R +
Sbjct: 241 GWSDMSRPSIGSAQVNQLPSVLD----DYILQVKRD-PLYL----ERESLVDHNIHRSGV 291
Query: 227 SI---SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
S+ PA S +RP+ + +T M I + +IG G+NI+ IR SGA
Sbjct: 292 SLYGRDPAL--STLRPSAVHGAGSLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGA 349
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDE 317
++ + G ++ G++ QV A+Q + +
Sbjct: 350 VVTIQESLGSPDDITVEIKGTSSQVQAAQQLIQD 383
>gi|326517934|dbj|BAK07219.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 632
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 125/261 (47%), Gaps = 48/261 (18%)
Query: 26 SGKR--RREDGEIEGSDPKRR--------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
SGKR + D + E D KRR A+ V++RI+ P + IG VIGK G I I
Sbjct: 4 SGKRTGQHRDHDREDRDQKRRPAHTQETSGMAELVVYRILCPDKVIGSVIGKGGKVINSI 63
Query: 76 REETKATIKIADAIARHEERVIIISS--KDNDNVVSD--------------AENALQQ-- 117
R++T A +K+ D ++RVI++ K D ++SD A+NAL +
Sbjct: 64 RQQTNAKVKVVDPYPGADKRVILVYCYVKHRDVMLSDINADDDDDREPVCAAQNALLKVH 123
Query: 118 ---IAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
+ AL + DD + EA+ +L+ SQA +IG SG I+KLR+ S +
Sbjct: 124 DAIVGALAVTDDSDDKEAN-------------ILVPASQAASVIGKSGSVIKKLRSVSKS 170
Query: 175 TIVILAPNQLPLCAS-AHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
I + + + S A D VQI+GD AV AL + + + P ++ I + + +
Sbjct: 171 FIKVKPKDPSDVTHSCAMSFDNFVQITGDARAVKKALFAVSTIMYKCPSKENIPLETSID 230
Query: 234 Y---SAIRPAQPFVEPTSADY 251
+ I P++ V P S+ Y
Sbjct: 231 ELPPTIILPSELPVYPASSLY 251
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 17/173 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD-NDNV 107
++L R++ P +IG VIGK G I+ IR+E+ A + + DA EE +I +SS + D+V
Sbjct: 311 ELLLRVVCPGDKIGLVIGKAGMTIKNIRKESGARVDVDDAKNDKEESIITVSSTEATDDV 370
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S A A+ + A I +D++ +RLL+ G+ GCLIG G I
Sbjct: 371 KSAAVEAVLLLQAKI--NDETEDRMH-----------LRLLVPGNVIGCLIGKGGSIIND 417
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+RN S A I+ ++ P AS+ SD +V++ G+V + +ALV+I +LRE+
Sbjct: 418 MRNKSKA-IIHISKGTKPRKASS--SDELVEVFGEVDKLRDALVQIVLRLRED 467
>gi|495128|emb|CAA53546.1| mCBP [Mus musculus]
Length = 331
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 151/329 (45%), Gaps = 74/329 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175
Query: 227 -------SISP-------AYN---------------------------------YSAIRP 239
S SP AY +S I
Sbjct: 176 IPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIES 235
Query: 240 AQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE 293
+ P V+ SA + E+ I L+G +I R G+ I+ IR SGA IK+
Sbjct: 236 SSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIRRQGAKINEIRQMSGAQIKIANPVEG 295
Query: 294 QKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 296 STDRQVTITGSAASISLAQYLINVRLSSE 324
>gi|308321889|gb|ADO28082.1| poly(rc)-binding protein 2 [Ictalurus furcatus]
Length = 318
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 147/315 (46%), Gaps = 59/315 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S S A T+R+++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV-I 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V I
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTI 176
Query: 227 SISPAYNYSAIRPA----------------------------QPF-VEPTSADYV----- 252
P + S + A PF + P+S +
Sbjct: 177 PYRPKPSGSPVTFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPLAPSSQGFTAGMDA 236
Query: 253 -----TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
+ E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 237 TTQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSPAS 296
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 ISLAEYLINARLSSE 311
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 25/159 (15%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S + G TIRLL+ G + G +IG G++++K+R SGA I I +
Sbjct: 2 DSSVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEG 52
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+ +R++ ++G A+ A I ++L E+ IS + + S TS
Sbjct: 53 NCPERIITLAGPTTAIFKAFSMIIDKLEED-------ISSSMSNSTA---------TSKP 96
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ G I IR +GA ++V G
Sbjct: 97 PVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 135
>gi|213511793|ref|NP_001133381.1| poly(rC)-binding protein 2 [Salmo salar]
gi|209152662|gb|ACI33123.1| PolyrC-binding protein 2 [Salmo salar]
Length = 327
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 152/324 (46%), Gaps = 68/324 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AY-------------NYSAIRP-----------AQPF-VEPT- 247
S SP AY + ++I P PF + P
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDSSSASISPQLTKLHQLAMQQSPFPMGPNN 236
Query: 248 ---------SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRH 298
SA + EM I L+G +IGR GS I+ IR SGA IK+ R
Sbjct: 237 PGFQGGMDASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVEGSADRQ 296
Query: 299 IQFGGSAQQVALAKQRVDEYIYSQ 322
+ GSA ++LA+ ++ + S+
Sbjct: 297 VTITGSAASISLAEYLINARLSSE 320
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 245 ASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVEGSADRQVTIT 300
>gi|317418810|emb|CBN80848.1| PolyrC-binding protein 2 [Dicentrarchus labrax]
Length = 306
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 148/308 (48%), Gaps = 58/308 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AY----NYSAIRP-----------AQPF-VEPT---------S 248
S SP AY ++ +P PF + P+ S
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPIAPSNQGFTGIDAS 236
Query: 249 ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
A + EM I L+G +IGR G+ I+ IR SGA IK+ R + GS +
Sbjct: 237 AQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTITGSPASI 296
Query: 309 ALAKQRVD 316
+LA+ ++
Sbjct: 297 SLAEYLIN 304
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 235 ASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTIT 290
>gi|348507477|ref|XP_003441282.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 434
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 60/312 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSSPERIVTITGPTEGIF-- 72
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A IA +D + S V + T+RL+ GSQ G LIG G I+++R
Sbjct: 73 ---RAFSMIAQKFEEDITAAMTNSNVTSK--PPVTLRLVFPGSQCGSLIGKGGSKIKEIR 127
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI--- 226
++GA + + A + LP ++R V ISG A+ + I + + E+PP+
Sbjct: 128 ETTGAQVQV-AGDMLP-----DSTERAVTISGTPQAITQCVRHICSVMLESPPKGATIPY 181
Query: 227 --SISPAYNYSAIRP---AQPFVEP----------------------------------- 246
+ PA ++ + P AQ F P
Sbjct: 182 RPKVIPAGTHAVLAPQHSAQAFAIPGQYAFAHQDLTKLHQLAMQHIPLPSLGQSNPTFPG 241
Query: 247 --TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGS 304
SA + E+ I +G +IGR GS I+ IR SGA IK+ R + GS
Sbjct: 242 LDASAPTSSQELAIPNDFIGCIIGRQGSKINEIRQVSGAHIKIASATDGSAMRQVTITGS 301
Query: 305 AQQVALAKQRVD 316
+++A+ ++
Sbjct: 302 PASISVAQYLIN 313
>gi|388511497|gb|AFK43810.1| unknown [Lotus japonicus]
Length = 279
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ ++ R++ P+ IG VIGK G I +IR+++ ATIK+ + ++ +I
Sbjct: 3 SAPRDEGSMREFSVRVVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIA 62
Query: 99 ISSKD--NDNVVSDAENA--LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
IS+K+ +D+ E A LQ + ++ D + + T RLL+ S+
Sbjct: 63 ISTKEFFDDSFSPTIEAAVRLQPRCSDKVERDSG-----------IVSFTTRLLVPSSRI 111
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCLIG G I ++R + A I IL LP AS E D +VQISGD+ +ALV++
Sbjct: 112 GCLIGKGGTIITEMRRLTKANIRILPKEDLPKIAS--EDDEMVQISGDLDVAKDALVQVL 169
Query: 215 NQLREN 220
+L+ N
Sbjct: 170 TRLKAN 175
>gi|410900550|ref|XP_003963759.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 434
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 66/315 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SSPERIVTIT--------- 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A A+ + A+I + ++D ++ S + T+RL+ GSQ G LIG G I++
Sbjct: 66 GATEAIFRAFAMIAQKFEEDISAAMSNSSVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKE 125
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR---- 223
+R ++GA + + A + LP ++R V ISG A+ + I + + E+PP+
Sbjct: 126 IRETTGAQVQV-AGDMLP-----DSTERAVTISGTPQAITQCVRHICSVMLESPPKGATI 179
Query: 224 ---------------------QVISISPAYNYS----------AIR-----------PAQ 241
+I Y ++ A++ P
Sbjct: 180 PYRPKAVTVGVHAVLAPQQSAHAFAIPGQYTFAHQDLTKLHQLAMQHIPLPSLGQSNPTF 239
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQF 301
P ++P SA + EM I +G +IGR GS I+ IR SGA IK+ R +
Sbjct: 240 PGLDP-SAPTSSQEMAIPNDFIGCIIGRQGSKINEIRQVSGAHIKIASTTDGSAVRQVTI 298
Query: 302 GGSAQQVALAKQRVD 316
GS + +A+ ++
Sbjct: 299 TGSPASINVAQYLIN 313
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 20/174 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
+ + G DP +Q+ + +P+ IG +IG++G +I +IR+ + A IKIA
Sbjct: 234 QSNPTFPGLDPSAPTSSQE----MAIPNDFIGCIIGRQGSKINEIRQVSGAHIKIASTTD 289
Query: 91 RHEER-VIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
R V I S + NV NA ++A ++ S A + L +
Sbjct: 290 GSAVRQVTITGSPASINVAQYLINASLEMAKYTMQAASS-------------ATPVDLNL 336
Query: 150 AGSQAGCLIGMSGQNIEKL--RNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
SQ+ + ++ L N + TI + +P+ LP + H + V + G
Sbjct: 337 GFSQSAPTASTAATSMAVLAAANPAPTTINVHSPSTLPAIQNPHYAIPVSSLLG 390
>gi|41055221|ref|NP_957486.1| poly(rC)-binding protein 2 [Danio rerio]
gi|28279638|gb|AAH45508.1| Poly(rC) binding protein 2 [Danio rerio]
gi|37681899|gb|AAQ97827.1| poly(rC) binding protein 2 [Danio rerio]
gi|42744604|gb|AAH66603.1| Pcbp2 protein [Danio rerio]
Length = 318
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 151/315 (47%), Gaps = 59/315 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S S A T+R+++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AY----NYSAIRP-----------AQPF-VEPTSADYV----- 252
S SP AY ++ +P PF + P+S +
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPLAPSSQGFTAGMDA 236
Query: 253 -----TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
+ E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 237 SAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTITGSPAS 296
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 ISLAEYLINARLSSE 311
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTIT 291
>gi|255583245|ref|XP_002532387.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223527911|gb|EEF29999.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 688
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 132/304 (43%), Gaps = 78/304 (25%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---------- 99
V FR++ + IG +IG+ G I +IR +T T+ + + + RVI I
Sbjct: 25 VAFRVVCHASIIGGLIGRSGSAISQIRRDTGCTVHCDEQVQGSDHRVITIVGPASPGKRI 84
Query: 100 ------------SSKDNDNVVSDAENALQQIAALILKDD---------DSNSEASKVAAG 138
+ ++ +VS A+ A+ ++ + + D D+NS S + G
Sbjct: 85 TLNSTTCHDHNGAEEEEKELVSVAQEAVIRVCERMWEVDGQRERRGGVDNNSNNSGLGEG 144
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
+ LL +Q G ++G G+N+ ++R SGA I L P P CAS + D+++Q
Sbjct: 145 YCG-----LLADTTQIGAVVGKGGKNVLRMRRESGADIRFLPP---PHCAS--KDDQLIQ 194
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQ---VISISPAYNYSAIRPAQPFVE---------- 245
I+G + AV ALV + + L + PP + + + P S + + P E
Sbjct: 195 ITGSILAVKKALVAVTDCLHDCPPYEKDPTLLMRPLERASHLASSDPHAEFFPHLSSLLP 254
Query: 246 ----------PTSADY--------------VTFEMLISESLVGGLIGRCGSNISRIRNES 281
P S+D V+F +L S G +IG+ G+ + ++NE+
Sbjct: 255 PLSGNSGTSHPLSSDAGEDPNQDAEAVRHEVSFRLLCSNGAAGSIIGKKGTIVRTLQNET 314
Query: 282 GAMI 285
GA I
Sbjct: 315 GASI 318
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 11/203 (5%)
Query: 38 GSDPKRRAKA--QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
G DP + A+A +V FR++ + G +IGK+G ++ ++ ET A+I A ++ ER
Sbjct: 271 GEDPNQDAEAVRHEVSFRLLCSNGAAGSIIGKKGTIVRTLQNETGASIMFAAPMSMSGER 330
Query: 96 VIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
V+ IS+ +N ++ S A+NA + A ++ D S + G A T RLL+A
Sbjct: 331 VVTISALENLESWHSPAQNAAILVFARSVEHDIEKGHPSGLIEG--ATVTARLLVASDAV 388
Query: 155 GCLI--GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
CLI G +G ++ SGA I IL Q+ CAS E D V++I+G+ V NAL
Sbjct: 389 CCLIEKGGTGNIDSEMIEVSGADIRILDGEQIMACAS--EDDVVIEITGEYKNVQNALFM 446
Query: 213 IGNQLRENPP--RQVISISPAYN 233
+ +LR P Q S++ A N
Sbjct: 447 VTGKLRGLSPDSDQETSLTRAMN 469
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GK E+E KR + + ++VP IG V G++G + ++R+ + A +++
Sbjct: 594 GKTFGRGAELESYSRKRSPIVVNTIIELVVPEDTIGSVYGEDGSNLARLRQISGAKVEVR 653
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIA-ALILKD 125
+ + R+++IS D NA Q + A IL D
Sbjct: 654 EPSSGKSGRIVVISG------TPDQTNAAQSLLQAFILAD 687
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
V F ++ S++GGLIGR GS IS+IR ++G + HR I G A
Sbjct: 25 VAFRVVCHASIIGGLIGRSGSAISQIRRDTGCTVHCDEQVQGSDHRVITIVGPA 78
>gi|291327528|ref|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus musculus]
gi|348581081|ref|XP_003476306.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cavia porcellus]
gi|74149644|dbj|BAE36444.1| unnamed protein product [Mus musculus]
gi|194378584|dbj|BAG63457.1| unnamed protein product [Homo sapiens]
gi|417398924|gb|JAA46495.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 322
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 151/320 (47%), Gaps = 65/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQVI-------SISP-------AYN----YSAIRP----------AQPFVEPT------- 247
+ V S SP AY Y+ +P Q T
Sbjct: 176 KGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 235
Query: 248 -----SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFG 302
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R +
Sbjct: 236 AGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 295
Query: 303 GSAQQVALAKQRVDEYIYSQ 322
GSA ++LA+ ++ + S+
Sbjct: 296 GSAASISLAQYLINVRLSSE 315
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 240 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 295
>gi|193083112|ref|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo sapiens]
gi|66911068|gb|AAH97410.1| Pcbp2 protein [Rattus norvegicus]
gi|78395095|gb|AAI07689.1| PCBP2 protein [Homo sapiens]
gi|417399138|gb|JAA46599.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 335
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 78/333 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQVI-------SISP-------AYN---------------------------------YS 235
+ V S SP AY +S
Sbjct: 176 KGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 235
Query: 236 AIRPAQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
I + P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 236 GIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 295
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 296 PVEGSTDRQVTITGSAASISLAQYLINVRLSSE 328
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 243 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 302
Query: 95 RVIIIS 100
R + I+
Sbjct: 303 RQVTIT 308
>gi|318054596|ref|NP_001188110.1| poly(rC)-binding protein 2 [Ictalurus punctatus]
gi|308322769|gb|ADO28522.1| poly(rc)-binding protein 2 [Ictalurus punctatus]
Length = 318
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 150/315 (47%), Gaps = 59/315 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S S A T+R+++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AY----NYSAIRP-----------AQPF-VEPTSADYV----- 252
S SP AY ++ +P PF + P+S +
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPLAPSSQGFTAGMDA 236
Query: 253 -----TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
+ E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 237 TTQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSPAS 296
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 ISLAEYLINARLSSE 311
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 25/159 (15%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S + G TIRLL+ G + G +IG G++++K+R SGA I I +
Sbjct: 2 DSSVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEG 52
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+ +R++ ++G A+ A I ++L E+ IS + + S TS
Sbjct: 53 NCPERIITLAGPTTAIFKAFSMIIDKLEED-------ISSSMSNSTA---------TSKP 96
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ G I IR +GA ++V G
Sbjct: 97 PVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 135
>gi|224127654|ref|XP_002329331.1| predicted protein [Populus trichocarpa]
gi|222870785|gb|EEF07916.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 24/194 (12%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII-SSKDNDNV 107
D ++RI+ PSR+IG VIGK G+ ++ +REET++ I +AD++ +ERVIII SS D
Sbjct: 43 DTVYRILCPSRKIGGVIGKGGNIVKALREETQSKITVADSVQGSDERVIIIYSSSDKPPR 102
Query: 108 VSD--------------------AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
D A++AL ++ I+++D AS + T RL
Sbjct: 103 KMDGDEGLPAGNGQQEAFEPHCAAQDALLKVHDRIVEEDLFGGMASDDDNDNNVV-TARL 161
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ + GC++G G I++LR+ +GA I +L + LP C A ++D +VQISG
Sbjct: 162 LVPNNMVGCVLGKRGDVIQRLRSETGANIRVLPADHLPSC--AMDTDELVQISGKPAVAK 219
Query: 208 NALVEIGNQLRENP 221
AL EI L +NP
Sbjct: 220 RALYEISILLHQNP 233
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 72 IQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
++ +++ET A+I + DA A EER I +S+ + N Q IL+ D S+
Sbjct: 333 VKIVQQETGASIHVEDASAESEERAIRVSAFEG------LWNPRSQTIDAILQLQDKTSD 386
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
S+ G + RLL+ S+ GC++G GQ I ++R A I + N P CAS
Sbjct: 387 FSE--KGMI---ITRLLVPSSKVGCILGQGGQVINEMRRRLQADIRVYPKNDKPKCAS-- 439
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLR 218
+ + +VQISG+ +AL EI ++LR
Sbjct: 440 DDEELVQISGNYGVAKDALAEIASRLR 466
>gi|15236863|ref|NP_193572.1| KH domain-containing protein [Arabidopsis thaliana]
gi|15214341|sp|P58223.1|Y4837_ARATH RecName: Full=KH domain-containing protein At4g18375
gi|22136632|gb|AAM91635.1| unknown protein [Arabidopsis thaliana]
gi|332658636|gb|AEE84036.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 606
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 150/322 (46%), Gaps = 68/322 (21%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSK 102
+++++++F+++ P I +VIGK G I++IRE + + I++ D+ + +E VII+++
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
++ D ++ A L+L++ ++ +A V ++LL++ GC+IG SG
Sbjct: 367 ES----PDDMKSMAVEAVLLLQEYINDEDAENV--------KMQLLVSSKVIGCVIGKSG 414
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN-- 220
I ++R + A I C S + D +V++SG+V +V +AL++I +LRE+
Sbjct: 415 SVINEIRKRTNANI----------CISKGKKDDLVEVSGEVSSVRDALIQIVLRLREDVL 464
Query: 221 ----------PPRQ-----------------------VISISPAYNYSAIRPAQPFVEPT 247
PP + + S S + Y + PA V +
Sbjct: 465 GDKDSVATRKPPARTDNCSFLSGSSNAGYTLPSFMSSMASTSGFHGYGSF-PAGDNVLGS 523
Query: 248 SADY--------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
+ Y E+LI + ++G+ G N+ IR SGAMI++ K
Sbjct: 524 TGPYSYGRLPSSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIA 583
Query: 300 QFGGSAQQVALAKQRVDEYIYS 321
G+ +Q+ A+ V ++ S
Sbjct: 584 LLSGTLEQMRCAENLVQAFVMS 605
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS--------- 100
V++RI+ P +G VIGK G I IR TKA IK+ D + +RVI I
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95
Query: 101 ---SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+K + + A++AL ++ I+ D+ N+ + V RLL+ SQ+ L
Sbjct: 96 IGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDD--NKECRLLVPFSQSSSL 153
Query: 158 IGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
IG +G+NI+++R + A++ +++ + P A E D VV ISG+ +V AL +
Sbjct: 154 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAI 213
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ + PR+ I P + S PA + P+
Sbjct: 214 MYKINPRENI---PLDSTSQDVPAASVIVPS 241
>gi|297804330|ref|XP_002870049.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297315885|gb|EFH46308.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 605
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 152/324 (46%), Gaps = 72/324 (22%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSK 102
+++++++ +++ P I +VIGK G I++IRE + + I++ D+ + +E VII+++
Sbjct: 306 SRSKELVLKVLCPLSNITRVIGKGGSTIKRIRETSGSCIEVNDSRTKCGDDECVIIVTAT 365
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
++ D ++ A L+L++ ++ +A KV ++L ++ GC+IG SG
Sbjct: 366 ES----PDDMKSMAVEAVLLLQEYINDEDAEKV--------KMQLFVSSKDIGCVIGKSG 413
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN-- 220
I ++R + A I C S + D +V+++G++ +V NA+++I +LRE+
Sbjct: 414 SVINEIRKRTNANI----------CISKGKKDDLVEVAGEISSVRNAIIQIVLRLREDVL 463
Query: 221 -----------PPRQVISIS------------------------------PAYN--YSAI 237
PP + + S PA + + ++
Sbjct: 464 GDRDSVAASRKPPARTDNYSLFSGSSNAGYTLPSFMSSASSSGFHGYGSFPAGDNVFGSV 523
Query: 238 RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHR 297
P P+S+ E+LI + + ++G+ G N+ IR SGAMI++ K Q
Sbjct: 524 SPYSFGRLPSSS---ALEILIPANAMSKVMGKGGGNLENIRRISGAMIEISDSKTSQGDH 580
Query: 298 HIQFGGSAQQVALAKQRVDEYIYS 321
G+ +Q+ A+ V +I S
Sbjct: 581 IALLSGTLEQMRCAENLVQAFIMS 604
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS-------- 101
V++RI+ P +G VIGK G I IR TKA IK+ D + +RVI I
Sbjct: 38 VIYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKKEE 97
Query: 102 -----KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
K + A++AL ++ I+ D+ N + LL+ SQ+
Sbjct: 98 EIDFMKSETEPLCCAQDALLKVYDAIVASDEEN-----IKIDRDDKKECLLLVPSSQSFS 152
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
LIG +G+NI+++R+++ A++ +++ + P A + D +V ISG+ +V AL +
Sbjct: 153 LIGKAGENIKRIRSTTRASVKVVSKDVSDPSHVCAMDYDNIVVISGEPESVKKALFAVSA 212
Query: 216 QLRENPPRQVISI 228
L + PR+ I +
Sbjct: 213 ILYKINPREHIPL 225
>gi|344266065|ref|XP_003405101.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Loxodonta
africana]
Length = 293
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 141/291 (48%), Gaps = 36/291 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E Q
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLEAYTIQGQ 175
Query: 227 SISPAYNYSAIRPAQ------PFVE---------PTSADYVTFEMLISESLVGGLIGRCG 271
P + + + P SA + E+ I L+G +IGR G
Sbjct: 176 YAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQG 235
Query: 272 SNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
+ I+ IR SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 236 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 286
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 211 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 266
>gi|327265639|ref|XP_003217615.1| PREDICTED: poly(rC)-binding protein 4-like [Anolis carolinensis]
Length = 422
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 65/321 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ ER+ I+ +
Sbjct: 28 LTLRMLMHGKEVGSIIGKKGETVKRIREQSTARITISE--GSCPERITTITGS------T 79
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEK 167
DA + A L++D + G V+ T+RL+I SQ G LIG +G I++
Sbjct: 80 DAVFRAVSMIAFKLEEDLGT---GAINGGTVSKPPVTLRLVIPASQCGSLIGKAGAKIKE 136
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV-- 225
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 137 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIIQCVRQICAVILESPPKGATI 190
Query: 226 -----ISISPAY-----------NYSAIRPAQ-PFVEPTSADYVTF-------------- 254
+S+ P Y I A+ ++ S V+F
Sbjct: 191 PYHPNLSLGPVLLSANQGFSMQGQYGGISQAEVAKLQQLSGHPVSFSSLGQTPSIVAGLD 250
Query: 255 --------EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
E L+ L+G +IGR GS IS IR SGA IK+ RH+ G+
Sbjct: 251 TNSQNSSQEFLVPNDLIGCIIGRQGSKISEIRQMSGAHIKIGNQTEGSAERHVTITGTPV 310
Query: 307 QVALAKQRVDEYIYSQLIQQA 327
+ LA +Y+ S ++ A
Sbjct: 311 SITLA-----QYLISACLETA 326
>gi|242078463|ref|XP_002444000.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
gi|241940350|gb|EES13495.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
Length = 629
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 148/336 (44%), Gaps = 85/336 (25%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSD 110
FR++ PS +IG VIG+ G I+ IR+E+ A I + DA EE +I I+S + D+V S
Sbjct: 312 FRVLCPSGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDREESIITITSTEAIDDVKSA 371
Query: 111 AENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A A+ + A I +DD N +RLL+ GCLIG G + +
Sbjct: 372 AVEAVLLLQAKINDYEDDRMN---------------LRLLVPNKVIGCLIGRGGSIVNDM 416
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ---- 224
R + A I+I ++ P AS+ SD +V++SG+ + +ALV+I +LRE+ ++
Sbjct: 417 RKKTKANILISKGDK-PRRASS--SDELVEVSGEADKLRDALVQIILRLREDVLKESVES 473
Query: 225 ----------VISISPAYNYS----AIRPAQPFVEPTSAD-----------------YVT 253
V + Y S A+ P P + P S D Y
Sbjct: 474 QNSDRDGKLTVATSDSLYGSSLSLPALLPHNPQIAPLSYDRRGESERALEVFPRTSSYGY 533
Query: 254 FEMLISESLVGGL---------------------------IGRCGSNISRIRNESGAMIK 286
M +++ GGL +G+ G+N+ IR SGA I+
Sbjct: 534 SSMQVTDDGYGGLPSYTSKAYEEHLPRDEMTIPASGLSKVMGKRGTNLDNIRKISGAHIE 593
Query: 287 VYGGKGEQKHRHIQF-GGSAQQVALAKQRVDEYIYS 321
+ K +H HI + G+++Q A+ + +I S
Sbjct: 594 IIESKS-SRHDHIAYISGTSEQRQSAENLIKAFIMS 628
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 146/353 (41%), Gaps = 87/353 (24%)
Query: 26 SGKRRREDGEIEGSDPKRRAK-----AQD-------VLFRIIVPSRQIGKVIGKEGHRIQ 73
+GKR R+ E E + K + K AQ+ VL+RI+ P IG VIGK G+ I
Sbjct: 5 TGKRPRQHREYEREERKDQHKRPFPHAQESSNNDGLVLYRILCPDSLIGSVIGKNGNVIN 64
Query: 74 KIREETKATIKIADAIARHEERVIII----------SSKDNDNVVSDAENALQQIAALIL 123
IR++T A +K+ D ++RVI++ + D++ V A++AL ++ I+
Sbjct: 65 AIRQQTSAKVKVVDPYPGADKRVILVYCYVKHRDLDAEVDDNEPVCAAQDALLRVHNAIV 124
Query: 124 KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
N S A +L+ SQA +IG SG I+ LR++S A I + +
Sbjct: 125 DTLHRNRRDSDKKNTEEA----NILVPASQASNVIGKSGAVIKHLRSTSRAFIKVSPKDP 180
Query: 184 LPLCAS-AHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------------- 229
S A D VQI+G AV AL + + ++P ++ I +
Sbjct: 181 SDATHSCAMSFDNFVQITGGAEAVKKALFGVSTIIYKHPSKENIPLETSIPEPTPSIIIP 240
Query: 230 ------PAYN-YSAIRPAQPFVEPT-----SADYVT------------------------ 253
PA N YSA A P V P+ S +V
Sbjct: 241 SELPVYPASNFYSAPDAAIPSVHPSLSILGSTHHVPELALPADDHGRLPIYPSILPVIPT 300
Query: 254 -----------FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK 295
F +L +G +IGR G+ I IR ESGA I V K +++
Sbjct: 301 YSAPKCSGELEFRVLCPSGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDRE 353
>gi|28317389|tpe|CAD29864.1| TPA: hnRNP-E2 b [Xenopus laevis]
Length = 319
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 148/316 (46%), Gaps = 60/316 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERII---------TLA 62
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
NA+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 63 GPTNAIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AYN----YSAIRP---------AQPFVEP-------------- 246
S SP AY Y+ +P Q P
Sbjct: 177 PYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHSGNTGFSGGID 236
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 237 ASAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTA 296
Query: 307 QVALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 SISLAQYLINVRLSSE 312
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 237 ASAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 292
>gi|224121400|ref|XP_002330818.1| predicted protein [Populus trichocarpa]
gi|222872620|gb|EEF09751.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 5/174 (2%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
D +FR+IVP ++G +IG+ G ++K+ +ET+A I+I + +R+++IS K+
Sbjct: 10 DNVFRLIVPLSKVGSIIGRRGELVKKMCDETRARIRILEGPLGISDRIVLISGKEEPEAP 69
Query: 109 -SDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
S A +A+ ++ + L + ++ S AA A +IRLL+A SQA LIG G I
Sbjct: 70 QSPAMDAVMRVFKRVSGLSPGEGDNTGSAAAAAGSAFCSIRLLVASSQAINLIGKQGSII 129
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+ ++ ++GA + ++A ++LP A++ E R+V+I G+ V AL + QLR+
Sbjct: 130 KSIQENTGAAVHVMAEDELPSYATSDE--RIVEIHGEAMKVFKALEAVIGQLRK 181
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
VT M + S +IG GSNI+ IR S A++ + +G ++ G+ QV +A
Sbjct: 287 VTQTMQVPLSYAEDIIGVAGSNIAYIRRTSRAILSIQESRGLPDEITVEIKGTGAQVQMA 346
Query: 312 KQRVDEYI 319
+Q + E+I
Sbjct: 347 QQLIQEFI 354
>gi|255557235|ref|XP_002519648.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223541065|gb|EEF42621.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 462
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 79/345 (22%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SD K + K + RI+VPS Q +IGK G I+K+R +T+ATIK+ A
Sbjct: 134 SDRKMKDKEE---CRILVPSSQSANIIGKAGTTIKKLRSKTRATIKVTPKDASDPTHSCA 190
Query: 99 ISSKDNDNVVSDAENALQQIA--ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+ D DN + ++ L+ +A A++L N E +IRLL+ GC
Sbjct: 191 M---DFDNFIMSPDD-LKSMAVEAILLLQGKINDEDDDTV-------SIRLLVPCKVIGC 239
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+IG SG I ++R + A I I + Q P CA + SD +V++ G+V +V +ALV+I +
Sbjct: 240 IIGKSGSIINEIRRRTKADIRI-SKGQKPKCADS--SDELVEVLGEVGSVRDALVQIVLR 296
Query: 217 LRENPPRQ-------VISISPAY------NYSAIRPAQPFVEPTSAD------------- 250
LR++ ++ + P Y + ++ + P V P + D
Sbjct: 297 LRDDALKEKDGSHNPSVGADPLYSGGSGISVPSLLSSVPPVTPLAYDQRPETGSGLGLLS 356
Query: 251 ------YVTFEM----------------------------LISESLVGGLIGRCGSNISR 276
Y + M L+ + VG ++G+ G+NI+
Sbjct: 357 SSNLYGYGSLTMGDNGYDSMSSYSSSKLYGGLPPPSTLEMLVPANAVGKVLGKGGANIAN 416
Query: 277 IRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
IR SGAMI++ K + R G+ +Q A+ + +I +
Sbjct: 417 IRKISGAMIEISDAKSARGDRIAHISGTPEQKRAAENLIQAFIMA 461
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 129/294 (43%), Gaps = 62/294 (21%)
Query: 27 GKRRR-----EDGEIEGSDPKRRAKAQD--------VLFRIIVPSRQIGKVIGKEGHRIQ 73
GKR R DG+ + KRR +D V +RI+ P IG VIGK G I
Sbjct: 5 GKRNRLQRDHHDGD--NKNQKRRVNDKDERGNNDELVAYRILCPDEVIGSVIGKNGKVIN 62
Query: 74 KIREETKATIKIADAIARHEERVIIISS--KDNDNVVSD-----------AENALQQIAA 120
IR+ET+A +K+ D +RVI I K ++V D A++AL ++ +
Sbjct: 63 SIRQETRAKVKVVDPFPGPNDRVITIYCYVKKKEDVELDDEFHDHQPFCAAQDALLRVHS 122
Query: 121 LILKDDDSNSEASKVAAGHVAANT--IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
I SN+ +S + + + R+L+ SQ+ +IG +G I+KLR+ + ATI +
Sbjct: 123 AI-----SNAVSSVLDSDRKMKDKEECRILVPSSQSANIIGKAGTTIKKLRSKTRATIKV 177
Query: 179 LAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAI 237
+ P + A + D + D+ ++ AI
Sbjct: 178 TPKDASDPTHSCAMDFDNFIMSPDDLKSMA--------------------------VEAI 211
Query: 238 RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
Q + D V+ +L+ ++G +IG+ GS I+ IR + A I++ G+
Sbjct: 212 LLLQGKINDEDDDTVSIRLLVPCKVIGCIIGKSGSIINEIRRRTKADIRISKGQ 265
>gi|327263854|ref|XP_003216732.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Anolis
carolinensis]
Length = 331
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 151/328 (46%), Gaps = 72/328 (21%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTI 176
Query: 227 ------SISP-------AYN----YSAIRPAQ-------------PF---------VEPT 247
S SP AY Y+ +P P VE +
Sbjct: 177 PYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVESS 236
Query: 248 SAD-------------YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ 294
S D + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 237 SPDEKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGS 296
Query: 295 KHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 297 TDRQVTITGSAASISLAQYLINVRLSSE 324
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E G G D A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 240 EKGYWAGLD----ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 295
Query: 92 HEERVIIIS 100
+R + I+
Sbjct: 296 STDRQVTIT 304
>gi|449492545|ref|XP_004159029.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 31/216 (14%)
Query: 18 EPEPR-----HDVSGKRRREDGEIEGSDP----KRRAKAQDVLFRIIVPSRQIGKVIGKE 68
EP PR H + R R I G + R A +DV+FR++ ++G +IGK
Sbjct: 303 EPSPRRRYGSHHNADYRSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQPDKVGSLIGKG 362
Query: 69 GHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDD 127
G ++ ++ ET A+IKI D +ER+++IS+++ + S A+ A+ + I
Sbjct: 363 GTVVRALQNETGASIKIVDT-PDLDERLVVISARETLEQTYSPAQEAVIRAHCRI----- 416
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL--- 184
+++ AA RLL+ G Q G L+G G I +R +G +I I +Q+
Sbjct: 417 -----AEIGYEPGAAVVARLLVHGQQIGYLVGRGGHIINDMRRGTGTSIQIFPRDQIQNG 471
Query: 185 -PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
P+ SD VVQ+ G++P+V +AL I N++R+
Sbjct: 472 GPM------SDEVVQVIGNLPSVQDALFHITNRIRD 501
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 134/328 (40%), Gaps = 92/328 (28%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--- 99
+ + D LFR++ P+ ++ ++ + +R+ A I + + + EE V++I
Sbjct: 61 KPSSPSDTLFRLLCPASKVSSIL-------RHLRDIPGARIHVDEPLPSCEECVLVILAG 113
Query: 100 -------SSKDND----------NVVSD-----------AENALQQIAALILK---DDDS 128
++ ND NV SD A+ AL + I++ D
Sbjct: 114 SPSKPTHTNPGNDREFREHDVHRNVSSDTVAGDSDERSQAQQALLRTFESIVRMNEDSGE 173
Query: 129 NSEASKVAAGHVAANTI-----------RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
N E K A + I RLL Q G ++G G+ +EK+R S A +
Sbjct: 174 NQEIQKKNADSAPNDRISGGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVK 233
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP------PRQVISISPA 231
I +Q P CAS D ++QISG+ AV+ AL + + L+++P S+ P
Sbjct: 234 IFPKDQNPACASPQ--DELIQISGNFSAVMKALSSVSSCLQDSPRVDSSNSSSTKSLGPT 291
Query: 232 YNYSAI-------RPAQPFVEPTSADY-------------------------VTFEMLIS 259
+ S++ P + + +ADY V F +L
Sbjct: 292 SHASSMSVQDEEPSPRRRYGSHHNADYRSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQ 351
Query: 260 ESLVGGLIGRCGSNISRIRNESGAMIKV 287
VG LIG+ G+ + ++NE+GA IK+
Sbjct: 352 PDKVGSLIGKGGTVVRALQNETGASIKI 379
>gi|296213265|ref|XP_002753197.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Callithrix
jacchus]
Length = 342
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 144/309 (46%), Gaps = 59/309 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERII---------TLA 62
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
NA+ + A+I+ ++D S + A T+ L++ SQ G LIG G I++
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDIRSSMTNSTAASRPPVTLSLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQIFVVMLESPPKGVTI 176
Query: 227 ------SISP-------AYN----YSAIRP----------AQPFVEPT------------ 247
S SP AY Y+ +P Q T
Sbjct: 177 PYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAIQQSHFPMTHGNTGFSAGLDA 236
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 237 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 296
Query: 308 VALAKQRVD 316
++LA+ ++
Sbjct: 297 ISLAQYLIN 305
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|354490197|ref|XP_003507246.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cricetulus
griseus]
Length = 322
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 150/320 (46%), Gaps = 65/320 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQVI-------SISP-------AYN----YSAIRP----------AQPFVEPT------- 247
+ V S SP AY Y+ +P Q T
Sbjct: 176 KGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 235
Query: 248 -----SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFG 302
SA + E+ I L+G +IGR G+ I+ IR SGA IK R +
Sbjct: 236 AGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTIT 295
Query: 303 GSAQQVALAKQRVDEYIYSQ 322
GSA ++LA+ ++ + S+
Sbjct: 296 GSAASISLAQYLINVRLSSE 315
>gi|449448150|ref|XP_004141829.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 31/216 (14%)
Query: 18 EPEPR-----HDVSGKRRREDGEIEGSDP----KRRAKAQDVLFRIIVPSRQIGKVIGKE 68
EP PR H + R R I G + R A +DV+FR++ ++G +IGK
Sbjct: 303 EPSPRRRYGSHHNADYRSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQPDKVGSLIGKG 362
Query: 69 GHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDD 127
G ++ ++ ET A+IKI D +ER+++IS+++ + S A+ A+ + I
Sbjct: 363 GTVVRALQNETGASIKIVDT-PDLDERLVVISARETLEQTYSPAQEAVIRAHCRI----- 416
Query: 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL--- 184
+++ AA RLL+ G Q G L+G G I +R +G +I I +Q+
Sbjct: 417 -----AEIGYEPGAAVVARLLVHGQQIGYLVGRGGHIINDMRRGTGTSIQIFPRDQIQNG 471
Query: 185 -PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
P+ SD VVQ+ G++P+V +AL I N++R+
Sbjct: 472 GPM------SDEVVQVIGNLPSVQDALFHITNRIRD 501
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 134/328 (40%), Gaps = 92/328 (28%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--- 99
+ + D LFR++ P+ ++ ++ + +R+ A I + + + EE V++I
Sbjct: 61 KPSSPSDTLFRLLCPASKVSSIL-------RHLRDIPGARIHVDEPLPSCEECVLVILAG 113
Query: 100 -------SSKDND----------NVVSD-----------AENALQQIAALILK---DDDS 128
++ ND NV SD A+ AL + I++ D
Sbjct: 114 SPSKPAHTNPGNDREFREHDVHRNVSSDTVAGDSDERSQAQQALLRTFESIVRMNEDSGE 173
Query: 129 NSEASKVAAGHVAANTI-----------RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
N E K A + I RLL Q G ++G G+ +EK+R S A +
Sbjct: 174 NQEIQKKNADSAPNDRISGGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVK 233
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP------PRQVISISPA 231
I +Q P CAS D ++QISG+ AV+ AL + + L+++P S+ P
Sbjct: 234 IFPKDQNPACASPQ--DELIQISGNFSAVMKALSSVSSCLQDSPRVDSSNSSSTKSLGPT 291
Query: 232 YNYSAI-------RPAQPFVEPTSADY-------------------------VTFEMLIS 259
+ S++ P + + +ADY V F +L
Sbjct: 292 SHASSMSVQDEEPSPRRRYGSHHNADYRSRSYSSIPGHENAGAGPRAAMEEDVVFRLLCQ 351
Query: 260 ESLVGGLIGRCGSNISRIRNESGAMIKV 287
VG LIG+ G+ + ++NE+GA IK+
Sbjct: 352 PDKVGSLIGKGGTVVRALQNETGASIKI 379
>gi|225707620|gb|ACO09656.1| PolyrC-binding protein 2 [Osmerus mordax]
Length = 318
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 150/315 (47%), Gaps = 59/315 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I++ ++D +S + A T+R+++ SQ G LIG G I++
Sbjct: 66 ---TAIFKAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG-NQLRENPPRQVI 226
+R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLEQSPPKGVT 176
Query: 227 -------SISP-------AY----NYSAIRP-----------AQPF-VEPT--------- 247
S SP AY ++ +P PF + P
Sbjct: 177 IPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPIAPNNQGFTGMDA 236
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + EM I L+G +IGR GS I+ IR SGA IK+ R + GS
Sbjct: 237 SAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVDGSADRQVTITGSPAS 296
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 ISLAEYLINARLSSE 311
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTSSHEMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVDGSADRQVTIT 291
>gi|357476219|ref|XP_003608395.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355509450|gb|AES90592.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 616
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
ED + DP+ A Q+V FRI+ +IG V+GK G ++ ++ ET A I + +
Sbjct: 250 EDNRVSSLDPE--ALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGPPVVE 307
Query: 92 HEERVIIISSKDN-DNVVSDAENAL-----QQIAALILK--DDDSNSEASKVAAGHVAAN 143
E+R+I I++ +N ++ S A+ A+ + I I K D SN E+S A
Sbjct: 308 CEDRLITITALENPESRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTA------- 360
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+L++ +Q G L+G G + ++R ++ +I I ++P CAS + D+VVQISG++
Sbjct: 361 --QLVVPSNQVGVLLGKGGAIVSEMRKATWTSIRITRNGEVPKCASFN--DQVVQISGEL 416
Query: 204 PAVLNALVEIGNQLREN 220
P V +AL +LR++
Sbjct: 417 PNVRDALYNATRRLRDH 433
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 129/294 (43%), Gaps = 68/294 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI--IISSKDNDNV 107
V+FR++ + +IG IGK G I+ +++ T A I+I DA ERVI I++ + +V
Sbjct: 20 VVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDGDV 79
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + AL ++ IL + S+ + V V+ RLL+ QAG +IG G + K
Sbjct: 80 SLNPQEALLKVFERILDVAAAESDGNGVGDRVVSC---RLLVNAGQAGGVIGKGGMVVAK 136
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R +G I +L ++LP C SD +++I G +V ALV + +L++ PP
Sbjct: 137 IRADTGCRIRVLN-DKLPAC--TKPSDEIIEIQGIASSVKKALVAVAGRLQDCPPLDRTK 193
Query: 228 ISPAYNYSAIRPAQPFVEPTSA-----------DY------------------------- 251
+ RP + F TSA D+
Sbjct: 194 M------MGTRPYEAFQNETSAVPHEGLTDLNMDFRLQRSSAISTSSIRSNGVPSKSHPL 247
Query: 252 ------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
VTF +L S +G ++G+ GS + ++NE+GA I V
Sbjct: 248 SVEDNRVSSLDPEALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISV 301
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 128 SNSEASKVAA-----GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
SN+E S GHV RLL S+ G IG SG I+ L+ +GA I I +
Sbjct: 3 SNTEESSFTTFKRNNGHV---VFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRI---D 56
Query: 183 QLPLCASAHESDRVVQISGDVPAVLN---ALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
P+ +V ++GD LN AL+++ ++ + +
Sbjct: 57 DAPVDCPERVIVVIVNLNGDGDVSLNPQEALLKVFERILD-----------------VAA 99
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
A+ V+ +L++ GG+IG+ G +++IR ++G I+V K
Sbjct: 100 AESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVVAKIRADTGCRIRVLNDK 151
>gi|221114013|ref|XP_002155770.1| PREDICTED: poly(rC)-binding protein 3-like [Hydra magnipapillata]
Length = 313
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 30/269 (11%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNVVS 109
I+ S+ G +IGKEG I+++R+E+ A I ++ + ER++ I +S + + V
Sbjct: 8 LHFIILSQDAGGIIGKEGRNIRQMRDESGANINVSGSTG--VERILNIKGTSSEVKSAVR 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
LQ+I + SN+E +V T+RLL+ SQ G LIG GQ I+++R
Sbjct: 66 MVAEKLQEILS------GSNNE-------YVPPVTLRLLVPNSQCGPLIGKGGQRIKEIR 112
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ-VISI 228
+SGATI I + LP S+R V ++G A+ + +I + E P RQ +
Sbjct: 113 EASGATITIPS-ETLP-----GSSERSVTLAGSPEALGLCIAKIWDIFEEFPARQNNVQY 166
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVTF------EMLISESLVGGLIGRCGSNISRIRNESG 282
P ++ P Q V + ++ + +++G LIG+ G +I+ IR SG
Sbjct: 167 FPNMYPRSMGPHQLSVMSGQLSFTGLSRRSEQKVRLPSNVIGSLIGKGGCHINEIRQFSG 226
Query: 283 AMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
A + V K + + + G+ + V+ A
Sbjct: 227 ATVHVEESKKDNRMSDVIIAGTPEAVSCA 255
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVIIIS 100
V R++VP+ Q G +IGK G RI++IRE + ATI I ++ + ER + ++
Sbjct: 86 VTLRLLVPNSQCGPLIGKGGQRIKEIREASGATITIPSETLPGSSERSVTLA 137
>gi|328712758|ref|XP_003244898.1| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 150/331 (45%), Gaps = 80/331 (24%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
D RI++ SR++G VIG G ++ IR ++ A + I++ ER++IIS N +
Sbjct: 27 DFTIRILLNSREVGNVIGIRGETVKNIRSQSGARVLISNG--STPERIVIISG----NTI 80
Query: 109 SDAENALQQIAALI-LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + LI LK ++ + + G T++L++ SQ G +IG +G I +
Sbjct: 81 -----AICRATELIGLKVEEFSERLNGNWIGPKTPLTLKLIVPASQCGFIIGKNGSKIRE 135
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R+SS A I++ N LP + ++R+V I+G + + + + N L ++PP S
Sbjct: 136 IRDSSRAAILV-GSNMLP-----NSTERLVSITGTTGTISHCVYLVCNVLLDSPPPNCES 189
Query: 228 IS-------------------------PAYNYSA----------IRPA------------ 240
I+ P N +A I PA
Sbjct: 190 IAYHPCKEISVFETCTVIKDLGTEHNIPLTNLAALGSGTATNGGINPAALTALAGSQLRA 249
Query: 241 ----------QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG 290
Q + + +++D T + + + L+G +IGR GS I++IR SGA + ++
Sbjct: 250 SNRLNNNVSGQQYDKNSNSDIDTTTISVPDDLIGCIIGRRGSKIAKIRQISGATVHIFRS 309
Query: 291 KG-----EQKHRHIQFGGSAQQVALAKQRVD 316
+G E+ R I G+ + V++AK ++
Sbjct: 310 QGTIENREKVDRRITITGNKESVSVAKYLIE 340
>gi|356528011|ref|XP_003532599.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 433
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 108/195 (55%), Gaps = 9/195 (4%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
K E + DPK A Q+V FRII + ++G VIGK G ++ ++ E+ A I +
Sbjct: 93 KLSAEVNRVSALDPK--AYQQEVTFRIICSNDRVGAVIGKGGSIVRALQNESGAIISVGP 150
Query: 88 AIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEAS-KVAAGHVAANTI 145
++ E+R++ I++ +N ++ S A+ A + + K ++ E ++ + T
Sbjct: 151 SLVECEDRLVTITASENPESTYSPAQKA---VVLVFSKSVEAGVEKGLELGSKKEPYVTA 207
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RL++ +Q GCL+G G + ++R ++GA I ++ +Q+P+C S ++D++VQISG
Sbjct: 208 RLVVPSNQVGCLLGKGGAIVSEMRKATGANIRVIGNDQVPMCVS--DNDQLVQISGVFSN 265
Query: 206 VLNALVEIGNQLREN 220
V A+ +LR++
Sbjct: 266 VQAAIHNATGRLRDH 280
>gi|224115590|ref|XP_002332094.1| predicted protein [Populus trichocarpa]
gi|222874914|gb|EEF12045.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 81/348 (23%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV- 107
D +FR+IVP ++G +IG++G ++K+ +ET+A I+I + +R+++IS K+
Sbjct: 52 DNVFRLIVPVSKVGSIIGRKGELVKKMCDETRARIRILEGPLGITDRIVLISGKEEPEAP 111
Query: 108 VSDAENA----LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+S A +A ++++ L + D+ A+ AA A +IRLL+A SQA LIG G
Sbjct: 112 LSPAMDAVLRVFKRVSGLSPGEGDNTGSAAAAAAAGSAFCSIRLLVASSQAINLIGKQGS 171
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I+ ++ ++G + ++A + +P A++ E R+V+I G+ V AL + LR+
Sbjct: 172 IIKSIQENTGVVVRVMAEDDIPTYATSDE--RIVEIHGEAMKVFKALEAVIGHLRKFLVD 229
Query: 224 QVISISPAY--NYSAI----RP-------AQP-------FVEPTSADY------------ 251
S+ P + Y+A RP AQP F +DY
Sbjct: 230 H--SVIPIFEKTYNATISLERPADACADNAQPSLHSAPAFSSGIISDYSLSLKRDPSIYE 287
Query: 252 --VTFEMLISE---SLVG--GLIGRCGSNISR---------------------------- 276
FE IS+ SL G GL+G + + R
Sbjct: 288 HETHFEHKISQPGFSLYGDPGLVGLRSTGLGRATAPIVTQVTQTMQVPLSYAEDIIGVAG 347
Query: 277 -----IRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
IR SGA++ + +G ++ G++ QV +A+Q + E+I
Sbjct: 348 SNIAYIRRTSGAILSIQESRGLPDEITVEIKGTSSQVQMAQQLIQEFI 395
>gi|195029383|ref|XP_001987553.1| GH21981 [Drosophila grimshawi]
gi|193903553|gb|EDW02420.1| GH21981 [Drosophila grimshawi]
Length = 512
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 31/208 (14%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
+RE + +G ++R + + + RI++PS G VIGK G IQK+R + KAT+ + D+
Sbjct: 2 KRESNDGDGPQDQKRNRRNEDMVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS- 60
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
+ ER I IS+ D ++ L+ I ++ ++ + E +RLLI
Sbjct: 61 -QGPERTIQISA--------DIDSTLEIITEMLKYFEERDDEFD-----------VRLLI 100
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V++A
Sbjct: 101 HQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQTQVIDA 155
Query: 210 LVEIGNQLRENPPRQVISISPAYNYSAI 237
+ E+ R+ P + P +NY +
Sbjct: 156 VREVITLTRDTPIK-----GPIHNYDPM 178
>gi|224095794|ref|XP_002310483.1| predicted protein [Populus trichocarpa]
gi|222853386|gb|EEE90933.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 145/300 (48%), Gaps = 71/300 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNV- 107
VLFR++ +IG +IGK G+ I+ ++++T A I+I DA +RVI I+ S +V
Sbjct: 58 VLFRLLCHDSRIGGIIGKGGNIIKGLQQQTGAKIRIEDAPLESPDRVITIVGSVTQSSVV 117
Query: 108 ---------VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
VS + AL ++ IL + +E+ VA G V+ RLL S G +I
Sbjct: 118 FSGIGSAIEVSKGQEALVRVFERIL---EVAAESDSVAGGLVSC---RLLAEISSVGAVI 171
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+ +EK+R G + +L ++LP CAS++E +++I GDV AV LV + ++L+
Sbjct: 172 GKGGKTVEKIRKDCGCKVKVLI-DKLPACASSNE--EMIEIEGDVSAVKKGLVAVSHRLQ 228
Query: 219 ENPP---RQVISISPAY----------------NYSAIRP-------AQPFVEPTSADY- 251
+ P +VIS P +SA+RP A P V +S DY
Sbjct: 229 DCQPVDKTRVISSKPVEAVSRVSFPEVGVEILPQHSAVRPTIAQHSVAPPTVTNSSIDYA 288
Query: 252 ------------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V F +L + VGG+IG+ G+ ++ ++NE+GA I +
Sbjct: 289 SGTHLFSLESERVSTLDTSTPQQQVVFRILCNNDRVGGVIGKGGNIVTALQNETGATISI 348
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 103/181 (56%), Gaps = 18/181 (9%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
Q V+FRI+ + ++G VIGK G+ + ++ ET ATI I +A +ER+I +++ +N ++
Sbjct: 311 QQVVFRILCNNDRVGGVIGKGGNIVTALQNETGATISIGPKVAGCDERLITVTASENPES 370
Query: 107 VVSDAENALQQIAALILKD------DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
S A+ + + + +++ D +SE S V ++RL+++ +Q GCL+G
Sbjct: 371 RYSAAQKTVVLVFSRVVESVIEKGLDPGSSEGSPV--------SVRLVVSPNQVGCLLGK 422
Query: 161 SGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I ++R ++ +I I+ +Q P C E+D VV+I GD V +++ I +LR+
Sbjct: 423 GGTIISEMRKATSTSIRIIGRDQGNPKCVP--ENDHVVEILGDFLNVKDSIYHITGRLRD 480
Query: 220 N 220
N
Sbjct: 481 N 481
>gi|194306633|ref|NP_001123613.1| poly(rC)-binding protein 3 isoform 2 [Homo sapiens]
gi|119629728|gb|EAX09323.1| poly(rC) binding protein 3, isoform CRA_a [Homo sapiens]
Length = 345
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 144/309 (46%), Gaps = 50/309 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG--------------- 214
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAI 210
Query: 215 --------NQL--RENPPRQVISISPAYNYSAI-----RPAQPFVEPTSA-----DYVTF 254
+QL ++ P + +PA+ + AQ + +S T
Sbjct: 211 PHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTH 270
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 271 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 330
Query: 315 VDEYIYSQL 323
++ + S++
Sbjct: 331 INARLTSEV 339
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
>gi|348581995|ref|XP_003476762.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Cavia porcellus]
Length = 360
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 129/290 (44%), Gaps = 50/290 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R S I L L +++ + G AV A V QL +
Sbjct: 127 IRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGH------- 179
Query: 228 ISPAYNYSAIRPAQPFVEPT-------SADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
A PF P+ +A + E L+ L+G +IGR GS IS IR
Sbjct: 180 ------------AVPFASPSVVPGLDPAAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 227
Query: 281 SGAMIKVYG---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
SGA IK+ G GE RHI GS +ALA +Y+ + ++ A
Sbjct: 228 SGAHIKIGNQAEGAGE---RHITITGSPVSIALA-----QYLITACLETA 269
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPAAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
I I+
Sbjct: 245 HITIT 249
>gi|15082311|gb|AAH12061.1| PCBP3 protein [Homo sapiens]
Length = 313
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 144/309 (46%), Gaps = 50/309 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG--------------- 214
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAI 178
Query: 215 --------NQL--RENPPRQVISISPAYNYSAI-----RPAQPFVEPTSA-----DYVTF 254
+QL ++ P + +PA+ + AQ + +S T
Sbjct: 179 PHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTH 238
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 239 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 298
Query: 315 VDEYIYSQL 323
++ + S++
Sbjct: 299 INARLTSEV 307
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|426218395|ref|XP_004003432.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Ovis aries]
Length = 345
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 144/309 (46%), Gaps = 50/309 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG--------------- 214
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAI 210
Query: 215 --------NQL--RENPPRQVISISPAYNYSAI-----RPAQPFVEPTSA-----DYVTF 254
+QL ++ P + +PA+ + AQ + +S T
Sbjct: 211 PHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTH 270
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 271 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 330
Query: 315 VDEYIYSQL 323
++ + S++
Sbjct: 331 INARLTSEV 339
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
>gi|338714774|ref|XP_003363150.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Equus
caballus]
Length = 360
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 50/290 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPTNGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R S I L L +++ + G AV +A V QL +
Sbjct: 127 IRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTSAEVTKLQQLSGH------- 179
Query: 228 ISPAYNYSAIRPAQPFVEPT-------SADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
A PF P+ A + E L+ L+G +IGR GS IS IR
Sbjct: 180 ------------AVPFASPSMVPGLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 227
Query: 281 SGAMIKVYG---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
SGA IK+ G GE RH+ GS +ALA +Y+ + ++ A
Sbjct: 228 SGAHIKIGNQAEGAGE---RHVTITGSPVSIALA-----QYLITACLETA 269
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
+ I+
Sbjct: 245 HVTIT 249
>gi|324505572|gb|ADY42393.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
Length = 415
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 150/348 (43%), Gaps = 71/348 (20%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+GKR+R DG E A R++VPSR G VIGK G I+++R E AT+ I
Sbjct: 87 TGKRQRADGYQEA------LAAGKYELRLLVPSRGAGAVIGKGGESIKRLRAECDATLTI 140
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D ++ ER++ I + + DNV+ + ++ LK DS+ E S A G + +
Sbjct: 141 PD--SQTPERIVTIVA-EIDNVIRCVNEIIPRLDEC-LKTRDSDDEGS--ARGE---SEL 191
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLL+ S AG +IG G I++LR + + + + ++RV+QI G
Sbjct: 192 RLLVHQSHAGAIIGRGGYRIKELREETSTQLKVYSQ------CCPQSTERVIQIIGVPEK 245
Query: 206 VLNALVEIGNQLRENP------PRQVISISPAY--NYSAIRPAQPF-------------V 244
++ ++ I N L+E P P + + P + Y P + + +
Sbjct: 246 IIACVILIINMLKEIPIKGPSRPYESMFYDPNFVHEYGGFPPDRNYRGMGPRGGMYGGGL 305
Query: 245 EPTSADYV-----------------------TFEMLISESLVGGLIGRCGSNISRIRNES 281
P + + T ++ I L G +IG+ G I+RIR ES
Sbjct: 306 PPRAPRFPYGGRGMGMGVSPFPPAPFGGPMQTTQVTIPNELGGTIIGKGGERINRIREES 365
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQAGA 329
GA I V + R I GS Q+ A +Y+ Q ++ + A
Sbjct: 366 GAHI-VVEPQQPNSERIITISGSHAQIQTA-----QYLLQQCVRTSMA 407
>gi|224141139|ref|XP_002323932.1| predicted protein [Populus trichocarpa]
gi|222866934|gb|EEF04065.1| predicted protein [Populus trichocarpa]
Length = 722
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 97/184 (52%), Gaps = 24/184 (13%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q ++FRI+ + +IG VIGK G+ ++ ++ ET A I + ++ +ER+I +++ +N
Sbjct: 298 QQLVFRILCTTDRIGGVIGKGGNIVRALQNETGAAISVGPTVSECDERLITVTASENPE- 356
Query: 108 VSDAENALQQIAALILKD----------DDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+A Q+ L+ D +S S V A RL+++ SQ GCL
Sbjct: 357 --SRYSAAQKTIVLVFSRAVESGIEKGLDPGSSRGSPVTA--------RLVVSPSQVGCL 406
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+G G I ++R ++ +I I+ +Q P C E+D VV+ISGD V +A+ + +
Sbjct: 407 LGKGGTIISEMRKATSTSIRIIVGDQRNPKCVP--ETDHVVEISGDFVNVKDAIYHVTGR 464
Query: 217 LREN 220
LR+N
Sbjct: 465 LRDN 468
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 146/326 (44%), Gaps = 80/326 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-----------I 98
V FR++ + +IG VIGK G+ I+ ++++T A ++I DA + +RVI +
Sbjct: 36 VSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKVRIEDAPSDSPDRVITVIGPITQSAVV 95
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S ++ VS + AL ++ IL + +E+ VA G V+ R+L S G +I
Sbjct: 96 FSRIESAVEVSKGQEALVRVFERIL---EVAAESDSVADGVVSC---RMLAEVSSVGAVI 149
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+ +EK+R G I +L ++LP CA+++E +++I GDV AV LV + L+
Sbjct: 150 GKGGKVVEKIRKDCGCRIKVLV-DKLPDCAASNE--EMIEIEGDVSAVKKGLVAVSRCLQ 206
Query: 219 ENPP---RQVISISPAY----------------NYSAIRP--AQ---------------P 242
+ P +V + PA +SA+ P AQ P
Sbjct: 207 DCQPVDKTRVTNSKPAEAVSRVSLSDVRVEIHPRHSAVLPTIAQNSSVLPTIPQHSLGLP 266
Query: 243 FVEPTSADY------------------------VTFEMLISESLVGGLIGRCGSNISRIR 278
+ +S +Y + F +L + +GG+IG+ G+ + ++
Sbjct: 267 TIPKSSINYASRVHPLSLESDRVVTPDTNIPQQLVFRILCTTDRIGGVIGKGGNIVRALQ 326
Query: 279 NESGAMIKVYGGKGEQKHRHIQFGGS 304
NE+GA I V E R I S
Sbjct: 327 NETGAAISVGPTVSECDERLITVTAS 352
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSA 305
P + +V+F +L S +GG+IG+ G+ I ++ ++GA +++ + R I G
Sbjct: 30 PVPSGHVSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKVRIEDAPSDSPDRVITVIGPI 89
Query: 306 QQVALAKQRVDEYI 319
Q A+ R++ +
Sbjct: 90 TQSAVVFSRIESAV 103
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 32/166 (19%)
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL-APNQLPLCASAHES 193
V +GHV + RLL S+ G +IG +G I+ L+ +GA + I AP+ P
Sbjct: 31 VPSGHV---SFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKVRIEDAPSDSP-------- 79
Query: 194 DRVVQISGDVP--AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTS--- 248
DRV+ + G + AV+ + +E ++ + + +R + +E +
Sbjct: 80 DRVITVIGPITQSAVVFSRIESAVEVSKG------------QEALVRVFERILEVAAESD 127
Query: 249 --AD-YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
AD V+ ML S VG +IG+ G + +IR + G IKV K
Sbjct: 128 SVADGVVSCRMLAEVSSVGAVIGKGGKVVEKIRKDCGCRIKVLVDK 173
>gi|67969673|dbj|BAE01185.1| unnamed protein product [Macaca fascicularis]
Length = 324
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 64/304 (21%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G ++K+REE+ A I I++ ER+I ++ N A+ +
Sbjct: 4 KEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN---------AIFKA 52
Query: 119 AALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT 175
A+I L++D S+S + AA T+RL++ SQ G LIG G I+++R S+GA
Sbjct: 53 FAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 111
Query: 176 IVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVI----- 226
+ + A + LP + ++R + I+G +++ + +I L ++PP+ V
Sbjct: 112 VQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRP 165
Query: 227 --SISP-------AYN----YSAIRP----------AQPFVEPT-----------SADYV 252
S SP AY Y+ +P Q T SA
Sbjct: 166 KPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGLDASAQTT 225
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
+ E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA ++LA+
Sbjct: 226 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ 285
Query: 313 QRVD 316
++
Sbjct: 286 YLIN 289
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 25/139 (17%)
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
G + G +IG G++++K+R SGA I I + + +R++ ++G A+ A
Sbjct: 3 GKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPTNAIFKAF 53
Query: 211 VEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRC 270
I ++L E+ IS S + +A RP VT +++ S G LIG+
Sbjct: 54 AMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQCGSLIGKG 97
Query: 271 GSNISRIRNESGAMIKVYG 289
G I IR +GA ++V G
Sbjct: 98 GCKIKEIRESTGAQVQVAG 116
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 79 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 130
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 220 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 275
>gi|432866565|ref|XP_004070866.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 318
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 145/315 (46%), Gaps = 59/315 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + + +I L++D SNS + A T+RL++ SQ G LIG G I++
Sbjct: 67 ---SIFKAFSMIIEKLEEDISNSMTNSTATSKPPV-TMRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV-I 226
+R S+GA + + A + LP + ++R + ++G +++ + +I + E+PP+ V I
Sbjct: 123 IRESAGAQVQV-AGDMLP-----NSTERAITVAGTPQSIIECVKQICIVMLESPPKGVTI 176
Query: 227 SISPAYNYS----------AIRPAQPFVEP-----------------------------T 247
P + S A++ +P
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPIAHSNQGFQAGMDA 236
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 237 SAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSHAS 296
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 ISLAEYLINARLSSE 311
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S V G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DSSLVEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+R++ ++G ++ A I +L E+ IS + S TS
Sbjct: 56 ---ERIITLAGPTTSIFKAFSMIIEKLEED-------ISNSMTNSTA---------TSKP 96
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQV 308
VT +++ S G LIG+ G I IR +GA ++V G R I G+ Q +
Sbjct: 97 PVTMRLVVPASQCGSLIGKGGCKIKEIRESAGAQVQVAGDMLPNSTERAITVAGTPQSI 155
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|413917022|gb|AFW56954.1| hypothetical protein ZEAMMB73_179405 [Zea mays]
Length = 632
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 149/334 (44%), Gaps = 81/334 (24%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDNDNVVSD 110
FR++ P +IG VIG+ G I+ IR+E+ A I + DA EE +I IIS++ D+V S
Sbjct: 315 FRVLCPGGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDKEESIITIISTESTDDVKSA 374
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
A A+ L+L+ ++SE ++ +RLL+ GCLIG G + +R
Sbjct: 375 AVEAV-----LLLQAKINDSEDDRM--------NLRLLVPNKVIGCLIGRGGSIVNDMRK 421
Query: 171 SSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE----------N 220
+ A I+I ++ P AS+ SD +V++SG+ + +ALV+I +LRE N
Sbjct: 422 KTKANILISKGDK-PRRASS--SDELVEVSGEADKLRDALVQIILRLREAVLKESVESQN 478
Query: 221 PPRQ----VISISPAYNYSAIRPA--------QPF-------------VEPTSADYVTFE 255
R V + Y S PA P V P ++ Y
Sbjct: 479 SDRDGQLTVAASDSLYGSSLPLPALLPHNQQIAPLGYDRRGEPERALEVFPRTSSYGYSS 538
Query: 256 MLISESLVGGL---------------------------IGRCGSNISRIRNESGAMIKVY 288
M +++ GGL +G+ G+N+ IR SGA I++
Sbjct: 539 MQVTDDGYGGLPSYASKAYEEHVPRLEMTVPASGISKVMGKHGTNLDNIRKISGAHIEII 598
Query: 289 GGKGEQKHRHIQF-GGSAQQVALAKQRVDEYIYS 321
K +H HI + G+++Q A+ + +I S
Sbjct: 599 EPKS-SRHEHIAYISGTSEQRHSAENLIKAFIMS 631
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 137/325 (42%), Gaps = 88/325 (27%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---------- 99
VL+RI+ P IG VIGK G+ I IR +T A +K+ D ++RVI++
Sbjct: 41 VLYRILCPDSLIGSVIGKHGNVINAIRHQTSAKVKVVDPYPGADKRVILVYCYVKHRDLD 100
Query: 100 SSKDNDNVVSDAENALQQIAALIL--------KDDDSNSEASKVAAGHVAANTIRLLIAG 151
+ D++ V A++AL ++ I+ DS+ ++++ A +L+
Sbjct: 101 AEGDDNEPVCAAQDALLRVHNAIVDALQTLHKNHKDSDKKSTEEA---------NILVPA 151
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL-PLCASAHESDRVVQISGDVPAVLNAL 210
SQA +IG SG I+ LR++S A I + + P + A D VQI+G AV AL
Sbjct: 152 SQASNVIGKSGAVIKHLRSTSRAFIKVSPKDPSDPTHSCAMSFDNFVQITGGAEAVKKAL 211
Query: 211 VEIGNQLRENPPRQVISIS-------------------PAYN-YSAIRPAQPFVEPTSA- 249
+ + ++P ++ I + PA N YSA A P V P+ +
Sbjct: 212 FGVSTIIYKHPSKENIPLETSIPDPTPSIIIPSELPVYPASNFYSAPDAAIPSVHPSMSV 271
Query: 250 ---------------DY------------------------VTFEMLISESLVGGLIGRC 270
D+ + F +L +G +IGR
Sbjct: 272 LGSTRHVPELAVPADDHGRLPIYQSILPVIPTYSAPKCSGELEFRVLCPGGKIGLVIGRG 331
Query: 271 GSNISRIRNESGAMIKVYGGKGEQK 295
G+ I IR ESGA I V K +++
Sbjct: 332 GATIKNIRQESGARIDVDDAKNDKE 356
>gi|291575150|ref|NP_065151.2| poly(rC)-binding protein 4 isoform a [Homo sapiens]
gi|114587204|ref|XP_001170813.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan troglodytes]
gi|16877720|gb|AAH17098.1| PCBP4 protein [Homo sapiens]
gi|119585570|gb|EAW65166.1| poly(rC) binding protein 4, isoform CRA_b [Homo sapiens]
Length = 360
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 129/284 (45%), Gaps = 38/284 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP-PRQVI 226
+R S I L L +++ + G AV A V QL + P
Sbjct: 127 IRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATP 186
Query: 227 SISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
S+ P + +Q E L+ L+G +IGR GS IS IR SGA IK
Sbjct: 187 SVVPGLDPGTQTSSQ-------------EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIK 233
Query: 287 VYG---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
+ G GE RH+ GS +ALA +Y+ + ++ A
Sbjct: 234 IGNQAEGAGE---RHVTITGSPVSIALA-----QYLITACLETA 269
>gi|301767224|ref|XP_002919001.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
Length = 360
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 50/290 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R S I L L +++ + G AV A V QL +
Sbjct: 127 IRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGH------- 179
Query: 228 ISPAYNYSAIRPAQPFVEPT-------SADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
A PF P+ A + E L+ L+G +IGR GS IS IR
Sbjct: 180 ------------AVPFASPSMVPGLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 227
Query: 281 SGAMIKVYG---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
SGA IK+ G GE RH+ GS +ALA +Y+ + ++ A
Sbjct: 228 SGAHIKIGNQAEGAGE---RHVTITGSPVSIALA-----QYLITACLETA 269
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 189 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 244
Query: 96 VIIIS 100
+ I+
Sbjct: 245 HVTIT 249
>gi|195401727|ref|XP_002059464.1| GJ17213 [Drosophila virilis]
gi|194142470|gb|EDW58876.1| GJ17213 [Drosophila virilis]
Length = 511
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 31/208 (14%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
+RE + +G ++R + + RI++PS G VIGK G IQK+R + KAT+ + D+
Sbjct: 2 KRESNDGDGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS- 60
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
+ ER I IS+ D ++ L+ I ++ ++ + E +RLLI
Sbjct: 61 -QGPERTIQIST--------DIDSTLEIITEMLKYFEERDEEFD-----------VRLLI 100
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V++A
Sbjct: 101 HQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIDA 155
Query: 210 LVEIGNQLRENPPRQVISISPAYNYSAI 237
+ E+ R+ P + P +NY +
Sbjct: 156 VREVITLTRDTPIK-----GPIHNYDPM 178
>gi|324518489|gb|ADY47116.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
gi|324519835|gb|ADY47493.1| Heterogeneous nuclear ribonucleoprotein K, partial [Ascaris suum]
Length = 361
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 145/336 (43%), Gaps = 66/336 (19%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR+R DG E A R++VPSR G VIGK G I+++R E AT+ I D
Sbjct: 22 KRQRADGYQEA------LAAGKYELRLLVPSRGAGAVIGKGGESIKRLRAECDATLTIPD 75
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
++ ER++ I + + DNV+ + ++ LK DS+ E S A G + +RL
Sbjct: 76 --SQTPERIVTIVA-EIDNVIRCVNEIIPRLDEC-LKTRDSDDEGS--ARGE---SELRL 126
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ S AG +IG G I++LR + + + + ++RV+QI G ++
Sbjct: 127 LVHQSHAGAIIGRGGYRIKELREETSTQLKVYSQ------CCPQSTERVIQIIGVPEKII 180
Query: 208 NALVEIGNQLRENP------PRQVISISPAY--NYSAIRPAQPF-------------VEP 246
++ I N L+E P P + + P + Y P + + + P
Sbjct: 181 ACVILIINMLKEIPIKGPSRPYESMFYDPNFVHEYGGFPPDRNYRGMGPRGGMYGGGLPP 240
Query: 247 TSADYV-----------------------TFEMLISESLVGGLIGRCGSNISRIRNESGA 283
+ + T ++ I L G +IG+ G I+RIR ESGA
Sbjct: 241 RAPRFPYGGRGMGMGVSPFPPAPFGGPMQTTQVTIPNELGGTIIGKGGERINRIREESGA 300
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
I V + R I GS Q+ A+ + ++I
Sbjct: 301 HI-VVEPQQPNSERIITISGSHAQIQTAQYLLQQWI 335
>gi|357447239|ref|XP_003593895.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|357447243|ref|XP_003593897.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482943|gb|AES64146.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482945|gb|AES64148.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 631
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 108/176 (61%), Gaps = 15/176 (8%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ PS +IG++IGK G I+++R+ + A I++ D+ ARH+E +I I++ ++
Sbjct: 307 SQSEELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATES 366
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
SD ++ + A L+L++ ++ + + V +IRLL+ GC+IG SG
Sbjct: 367 ---TSDLKSVAVE-AVLLLQEKINDEDDAPV--------SIRLLVPSKVIGCIIGRSGAI 414
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I I N+ A ++D +V++ G+V V +AL++I +LRE+
Sbjct: 415 INEIRKRTKADIQISRSNKPKY---ADDNDELVEVVGEVDCVRDALIQIVLRLRED 467
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 144/359 (40%), Gaps = 94/359 (26%)
Query: 26 SGKRRRE--DGEIEG------------SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHR 71
+GKR R+ DG+ G +D R K + + +RI+ P+ IG VIGK G
Sbjct: 4 NGKRNRQQRDGDRGGRNWDNKNQKRRVNDRDERDKGELIAYRILCPNEVIGSVIGKNGKV 63
Query: 72 IQKIREETKATIKIADAIARHEERVIII-------------SSKDNDNVVSDAENALQQI 118
I IR+E++A +K+ D + RVI I DN+ + A++AL ++
Sbjct: 64 INSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEIEDEFDNEKPLCAAQDALIKV 123
Query: 119 AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
+ I ++ ++ K + ++L+ SQ+ LIG +G I++LR + I +
Sbjct: 124 HSAISNSIETAGDSEKKRKNK---DECQILVPSSQSAILIGKAGATIKQLRVKTRTNIKV 180
Query: 179 LAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS-------- 229
+ + P + A E D V + G+ AV AL + + + P++ I +
Sbjct: 181 VPKDAADPEHSCAMEFDNFVLV-GESEAVKRALFAVSTIMYKFSPKEDIPLDTTVPETPH 239
Query: 230 --------PAYNYSAIRPA-QPFVEPTS-------------------------------- 248
P Y + PA P V+P S
Sbjct: 240 SIIIPSELPIYPPGGLYPASDPIVQPRSFPQLIGATTMQDLHGGYADTGNTWPLYSSPLP 299
Query: 249 ---------ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRH 298
++ + ML +G LIG+ G I R+R SGA I+V + K RH
Sbjct: 300 VVSSLGASQSEELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEV----DDSKARH 354
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
++VP+ +GKV+GK G + IR+ + AT++I+++ + +RV +IS + A
Sbjct: 563 LEMVVPANAVGKVMGKGGANLANIRKISGATVEISESKSYRGDRVALISGTSEEKRA--A 620
Query: 112 ENALQ 116
EN +Q
Sbjct: 621 ENLIQ 625
>gi|410900025|ref|XP_003963497.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 318
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 144/315 (45%), Gaps = 59/315 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + + +I L++D S S + A TIRL++ SQ G LIG G I++
Sbjct: 67 ---SIFKAFSMIIEKLEEDISTSMTNSTATSKPPV-TIRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV-I 226
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V I
Sbjct: 123 IRESAGAQVQV-AGDMLP-----NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTI 176
Query: 227 SISPAYNYS----------AIRPAQPFVEP-----------------------------T 247
P + S A++ +P
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPIAHSNQGFQAGMDA 236
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 237 SAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSHAS 296
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 297 ISLAEYLINARLSSE 311
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 26/179 (14%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S V G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DSSLVEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+R++ ++G ++ A I +L E+ IS S N +A TS
Sbjct: 56 ---ERIITLAGPTTSIFKAFSMIIEKLEED-----ISTS-MTNSTA----------TSKP 96
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQV 308
VT +++ S G LIG+ G I IR +GA ++V G R I G+ Q +
Sbjct: 97 PVTIRLVVPASQCGSLIGKGGCKIKEIRESAGAQVQVAGDMLPNSTERAITIAGTPQSI 155
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 236 ASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 291
>gi|224135123|ref|XP_002321989.1| predicted protein [Populus trichocarpa]
gi|222868985|gb|EEF06116.1| predicted protein [Populus trichocarpa]
Length = 685
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 18/186 (9%)
Query: 38 GSDPKRRAK----AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+DP + +D++FRI+ P ++ +V+G+ + ++ E +K+AD ++ +
Sbjct: 336 GADPNADSAQPFYVEDLVFRILCPIDKVNRVVGESDGLVDLLQNEIGVDVKVADPVSGSD 395
Query: 94 ERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
E++I I S++ D+ + A+ AL I I+ + A T RLL+ S
Sbjct: 396 EQIITICSEEGPDDELFPAQEALLHIQTRIV----------DLVADKDNIITTRLLVPSS 445
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
+ GCL G G ++ ++ + +GATI IL LP S +D +VQI G+V A +ALVE
Sbjct: 446 EIGCLEGRDG-SLSEMESLTGATIEILPKEMLPTYLSG--TDELVQIQGEVKAARDALVE 502
Query: 213 IGNQLR 218
+ ++LR
Sbjct: 503 VTSRLR 508
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +D +
Sbjct: 88 YRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 147
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI---------RLLIAGSQAGC 156
S A+ AL I IL++D S A G + RL+++ GC
Sbjct: 148 PSFSPAQEALFLIHDRILENDLQYGVVSSGAGGFEEDEYVGRGGNRVATRLVVSRMHVGC 207
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I +
Sbjct: 208 LLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSV--SEEIVQVIGDVNAVKNAVAIISS 265
Query: 216 QLREN 220
+LRE+
Sbjct: 266 RLRES 270
>gi|297262518|ref|XP_001105618.2| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Macaca mulatta]
Length = 335
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 151/333 (45%), Gaps = 78/333 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
NA+ + A+I L++ S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 66 ---NAIFKAFAMIIDKLEEVFSSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQVI-------SISP-------AYN---------------------------------YS 235
+ V S SP AY +S
Sbjct: 176 KGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 235
Query: 236 AIRPAQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
I + P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 236 GIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 295
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 296 PVEGSTDRQVTITGSAASISLAQYLINVRLSSE 328
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 243 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 302
Query: 95 RVIIIS 100
R + I+
Sbjct: 303 RQVTIT 308
>gi|443685583|gb|ELT89137.1| hypothetical protein CAPTEDRAFT_171528 [Capitella teleta]
Length = 398
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 29/230 (12%)
Query: 28 KRRREDGEIEGSDP--KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
KR E+ G P K R + +V RI++ S+ G +IGK G I+++R + AT+ +
Sbjct: 2 KRSLEEDNTIGDVPLKKTRGEGPNVELRILLQSKNAGAIIGKGGANIKRLRSDYNATVTV 61
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D+ ERV+ + + N+ + E L I +L E K +
Sbjct: 62 PDSSG--PERVLTVGA----NLGTALEILLDVIPSL---------EDYKRFKDLEFECEM 106
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
R LI SQAGC+IG G I++LR+ +GA I + + CA S+R+VQ++G
Sbjct: 107 RWLIHQSQAGCVIGRGGNKIKELRDETGAQIKVYSQ-----CA-PQSSERIVQLTGKPRV 160
Query: 206 VLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
V+N+L I + L+ PP+ + N+ F P Y FE
Sbjct: 161 VVNSLATIFDLLQTAPPKGFNNPYDPNNFDE------FYAPEYGGYTQFE 204
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 31/144 (21%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G NI++LR+ AT+ + + +RV+ + ++
Sbjct: 28 LRILLQSKNAGAIIGKGGANIKRLRSDYNATVTV---------PDSSGPERVLTVGANLG 78
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
L L+++ I +Y + + E LI +S G
Sbjct: 79 TALEILLDV--------------IPSLEDYKRFKDLEFECE--------MRWLIHQSQAG 116
Query: 265 GLIGRCGSNISRIRNESGAMIKVY 288
+IGR G+ I +R+E+GA IKVY
Sbjct: 117 CVIGRGGNKIKELRDETGAQIKVY 140
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR+E+ A I I + + ++R+I I+ + + +A+
Sbjct: 327 QVSIPKDLAGAIIGKGGSRIRQIRQESGAGINIDEPMQGSQDRIITITGSQDQ--IQNAQ 384
Query: 113 NALQ 116
LQ
Sbjct: 385 YLLQ 388
>gi|256083129|ref|XP_002577802.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230296|emb|CCD76467.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 368
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 31/209 (14%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +V+ L+++ + +DD + +RLL+ SQAGC+IG +G
Sbjct: 59 DLGSVIEIFRENLEKMQS--NRDDGVD---------------LRLLVHQSQAGCVIGRAG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC + +DRV+Q+ GDV VL+ L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPCS--TDRVIQLVGDVGKVLDCLRSIAELLEGAPP 156
Query: 223 RQVISISPAYNYSAIRPAQPFVEPTSADY 251
+ NY A R A F+ P +
Sbjct: 157 K-----GSRQNYDA-RNADEFISPEYGGW 179
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 37/145 (25%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R LI+ AG +IG G+NI+K+R + I ++ +RV+ + GD
Sbjct: 11 LRFLISTKAAGVIIGKGGENIKKIREEYSVKVTI---------PDSNGPERVLVLDGD-- 59
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
L +++EI REN + ++ D V +L+ +S G
Sbjct: 60 --LGSVIEI---FRENLEK--------------------MQSNRDDGVDLRLLVHQSQAG 94
Query: 265 GLIGRCGSNISRIRNESGA-MIKVY 288
+IGR G I +R +SG +KVY
Sbjct: 95 CVIGRAGYKIKELREQSGLHTLKVY 119
>gi|195119576|ref|XP_002004307.1| GI19683 [Drosophila mojavensis]
gi|193909375|gb|EDW08242.1| GI19683 [Drosophila mojavensis]
Length = 509
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 31/208 (14%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
+RE + +G ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KRESNDGDGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD-- 59
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
++ ER I IS +D ++ L+ I ++ ++ + E +RLLI
Sbjct: 60 SQGPERTIQIS--------TDIDSTLEIITEMLKYFEERDEEYD-----------VRLLI 100
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+ A
Sbjct: 101 HQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIEA 155
Query: 210 LVEIGNQLRENPPRQVISISPAYNYSAI 237
+ E+ R+ P + P +NY +
Sbjct: 156 VREVITLTRDTPIK-----GPIHNYDPM 178
>gi|426249910|ref|XP_004018689.1| PREDICTED: poly(rC)-binding protein 4 [Ovis aries]
Length = 425
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 67/298 (22%)
Query: 72 IQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
+++IRE++ A I I++ S + ++ + A+ ++I D +
Sbjct: 62 VKRIREQSSARITISEG-----------SCPERITTITGSTAAVFHAVSMIAFKLDEDLC 110
Query: 132 ASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
A+ G+V+ T+RL+I SQ G LIG +G I+++R ++GA + + A + LP
Sbjct: 111 AAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV-AGDLLP---- 165
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPAYN--------------- 233
+ ++R V +SG A++ + +I + E+PP+ I P+ +
Sbjct: 166 -NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSTNQGFSVQ 224
Query: 234 --YSAIRPAQ------------PFVEPT-------SADYVTFEMLISESLVGGLIGRCGS 272
Y A+ PA+ PF P+ S + E L+ L+G +IGR GS
Sbjct: 225 GQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLDPSTQTSSQEFLVPNDLIGCVIGRQGS 284
Query: 273 NISRIRNESGAMIKVYG---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
IS IR SGA IK+ G GE RH+ GS +ALA +Y+ + ++ A
Sbjct: 285 KISEIRQMSGAHIKIGNQAEGAGE---RHVTITGSPVSIALA-----QYLITACLETA 334
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 124 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 183
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 184 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSTNQGFSVQGQYGAVTPAE 234
Query: 165 IEKLRNSSGATIVILAPNQLP 185
+ KL+ SG + +P+ +P
Sbjct: 235 VTKLQQLSGHAVPFASPSMVP 255
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 254 VPGLDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 309
Query: 96 VIIIS 100
+ I+
Sbjct: 310 HVTIT 314
>gi|256083125|ref|XP_002577800.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230298|emb|CCD76469.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 371
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 31/209 (14%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +V+ L+++ + +DD + +RLL+ SQAGC+IG +G
Sbjct: 59 DLGSVIEIFRENLEKMQS--NRDDGVD---------------LRLLVHQSQAGCVIGRAG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC + +DRV+Q+ GDV VL+ L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPCS--TDRVIQLVGDVGKVLDCLRSIAELLEGAPP 156
Query: 223 RQVISISPAYNYSAIRPAQPFVEPTSADY 251
+ NY A R A F+ P +
Sbjct: 157 K-----GSRQNYDA-RNADEFISPEYGGW 179
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 37/145 (25%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R LI+ AG +IG G+NI+K+R + I ++ +RV+ + GD
Sbjct: 11 LRFLISTKAAGVIIGKGGENIKKIREEYSVKVTI---------PDSNGPERVLVLDGD-- 59
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
L +++EI REN + ++ D V +L+ +S G
Sbjct: 60 --LGSVIEI---FRENLEK--------------------MQSNRDDGVDLRLLVHQSQAG 94
Query: 265 GLIGRCGSNISRIRNESGA-MIKVY 288
+IGR G I +R +SG +KVY
Sbjct: 95 CVIGRAGYKIKELREQSGLHTLKVY 119
>gi|223947189|gb|ACN27678.1| unknown [Zea mays]
gi|223950255|gb|ACN29211.1| unknown [Zea mays]
gi|414868821|tpg|DAA47378.1| TPA: KH domain containing protein [Zea mays]
Length = 508
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP+ ++G VIG++G I+K+ EE++A IK+ + ER ++I
Sbjct: 97 DKKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMI 156
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D + A + L ++ I D +E + V RLL+ SQAG LI
Sbjct: 157 SAKDEPDTELPPAVDGLLRVHRRIT--DGLETETDQPQRATVNTGPTRLLVPASQAGSLI 214
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ ++++S + I+ N P+ A DRVV+I G+ A+ I + LR
Sbjct: 215 GKQGATIKSIQDASKCVLRIVE-NVPPV---ALNDDRVVEIQGEPHDSHKAVELIASHLR 270
Query: 219 E 219
+
Sbjct: 271 K 271
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD- 87
RR DG +D +RA R++VP+ Q G +IGK+G I+ I++ +K ++I +
Sbjct: 178 RRITDGLETETDQPQRATVNTGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIVEN 237
Query: 88 --AIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
+A +++RV+ I + + D+ A++ IA+ + K
Sbjct: 238 VPPVALNDDRVVEIQGEPH-----DSHKAVELIASHLRK 271
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY-GGKGEQKHRHIQFGGSAQQVAL 310
VT M + S +IG G++IS IR SGA I + G GE ++ GSA QV
Sbjct: 382 VTHSMQVPLSYADAVIGAAGASISYIRRHSGATISIQEGAPGEMT---VEITGSASQVQT 438
Query: 311 AKQRVDEYI 319
A+Q + ++
Sbjct: 439 AQQLIKNFM 447
>gi|256083131|ref|XP_002577803.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230295|emb|CCD76466.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 322
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 31/209 (14%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +V+ L+++ + +DD + +RLL+ SQAGC+IG +G
Sbjct: 59 DLGSVIEIFRENLEKMQS--NRDDGVD---------------LRLLVHQSQAGCVIGRAG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC + +DRV+Q+ GDV VL+ L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPCS--TDRVIQLVGDVGKVLDCLRSIAELLEGAPP 156
Query: 223 RQVISISPAYNYSAIRPAQPFVEPTSADY 251
+ NY A R A F+ P +
Sbjct: 157 K-----GSRQNYDA-RNADEFISPEYGGW 179
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 37/145 (25%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R LI+ AG +IG G+NI+K+R + I ++ +RV+ + GD
Sbjct: 11 LRFLISTKAAGVIIGKGGENIKKIREEYSVKVTI---------PDSNGPERVLVLDGD-- 59
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
L +++EI REN + ++ D V +L+ +S G
Sbjct: 60 --LGSVIEI---FRENLEK--------------------MQSNRDDGVDLRLLVHQSQAG 94
Query: 265 GLIGRCGSNISRIRNESGA-MIKVY 288
+IGR G I +R +SG +KVY
Sbjct: 95 CVIGRAGYKIKELREQSGLHTLKVY 119
>gi|147817258|emb|CAN62067.1| hypothetical protein VITISV_030085 [Vitis vinifera]
Length = 288
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 39/190 (20%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII----- 99
AK Q VLFRI+ P+ + G VIGK G I++ RE+T A I+I D++ +ERVI+I
Sbjct: 96 AKPQ-VLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVADAV 154
Query: 100 -------------------------SSKD----NDNVVSDAENALQQIAALILK-DDDSN 129
SS + +D+ S A+ AL ++ ILK D++
Sbjct: 155 KSKREASAICGAEANDGEESANLRNSSPNPVAVDDDESSPAQQALVRVFERILKVDEERE 214
Query: 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
+ K G+VA RLL +Q GC++G G+ +EK+R SGA I +L + +P CAS
Sbjct: 215 EKEKKEDLGNVAV-CCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACAS 273
Query: 190 AHESDRVVQI 199
D ++Q+
Sbjct: 274 --PGDELIQV 281
>gi|335299140|ref|XP_003358506.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Sus scrofa]
Length = 360
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 128/290 (44%), Gaps = 50/290 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R S I L L +++ + G AV A V QL +
Sbjct: 127 IRESPPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGH------- 179
Query: 228 ISPAYNYSAIRPAQPFVEPT-------SADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
A PF P+ + E L+ L+G +IGR GS IS IR
Sbjct: 180 ------------AVPFASPSMVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 227
Query: 281 SGAMIKVYG---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
SGA IK+ G GE RH+ GS +ALA +Y+ + ++ A
Sbjct: 228 SGAHIKIGNQAEGAGE---RHVTITGSPVSIALA-----QYLITACLETA 269
>gi|414868822|tpg|DAA47379.1| TPA: hypothetical protein ZEAMMB73_380288 [Zea mays]
Length = 499
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP+ ++G VIG++G I+K+ EE++A IK+ + ER ++I
Sbjct: 97 DKKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMI 156
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D + A + L ++ I D +E + V RLL+ SQAG LI
Sbjct: 157 SAKDEPDTELPPAVDGLLRVHRRIT--DGLETETDQPQRATVNTGPTRLLVPASQAGSLI 214
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ ++++S + I+ N P+ A DRVV+I G+ A+ I + LR
Sbjct: 215 GKQGATIKSIQDASKCVLRIVE-NVPPV---ALNDDRVVEIQGEPHDSHKAVELIASHLR 270
Query: 219 E 219
+
Sbjct: 271 K 271
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD- 87
RR DG +D +RA R++VP+ Q G +IGK+G I+ I++ +K ++I +
Sbjct: 178 RRITDGLETETDQPQRATVNTGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIVEN 237
Query: 88 --AIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
+A +++RV+ I + + D+ A++ IA+ + K
Sbjct: 238 VPPVALNDDRVVEIQGEPH-----DSHKAVELIASHLRK 271
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY-GGKGEQKHRHIQFGGSAQQVAL 310
VT M + S +IG G++IS IR SGA I + G GE ++ GSA QV
Sbjct: 382 VTHSMQVPLSYADAVIGAAGASISYIRRHSGATISIQEGAPGEMT---VEITGSASQVQT 438
Query: 311 AKQRV 315
A+Q +
Sbjct: 439 AQQLI 443
>gi|256083127|ref|XP_002577801.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230297|emb|CCD76468.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 363
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 31/209 (14%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +V+ L+++ + +DD + +RLL+ SQAGC+IG +G
Sbjct: 59 DLGSVIEIFRENLEKMQS--NRDDGVD---------------LRLLVHQSQAGCVIGRAG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC + +DRV+Q+ GDV VL+ L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPCS--TDRVIQLVGDVGKVLDCLRSIAELLEGAPP 156
Query: 223 RQVISISPAYNYSAIRPAQPFVEPTSADY 251
+ NY A R A F+ P +
Sbjct: 157 K-----GSRQNYDA-RNADEFISPEYGGW 179
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 37/145 (25%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R LI+ AG +IG G+NI+K+R + I ++ +RV+ + GD
Sbjct: 11 LRFLISTKAAGVIIGKGGENIKKIREEYSVKVTI---------PDSNGPERVLVLDGD-- 59
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
L +++EI REN + ++ D V +L+ +S G
Sbjct: 60 --LGSVIEI---FRENLEK--------------------MQSNRDDGVDLRLLVHQSQAG 94
Query: 265 GLIGRCGSNISRIRNESGA-MIKVY 288
+IGR G I +R +SG +KVY
Sbjct: 95 CVIGRAGYKIKELREQSGLHTLKVY 119
>gi|226494805|ref|NP_001148654.1| KH domain containing protein [Zea mays]
gi|195621126|gb|ACG32393.1| KH domain containing protein [Zea mays]
Length = 529
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K + +FRI+VP+ ++G VIG++G I+K+ EE++A IK+ + ER ++I
Sbjct: 97 DKKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMI 156
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+KD D + A + L ++ I D +E + V RLL+ SQAG LI
Sbjct: 157 SAKDEPDTELPPAVDGLLRVHRRIT--DGLETETDQPQRATVNTGPTRLLVPASQAGSLI 214
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I+ ++++S + I+ N P+ A DRVV+I G+ A+ I + LR
Sbjct: 215 GKQGATIKSIQDASKCVLRIVE-NVPPV---ALNDDRVVEIQGEPHDSHKAVELIASHLR 270
Query: 219 E 219
+
Sbjct: 271 K 271
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD- 87
RR DG +D +RA R++VP+ Q G +IGK+G I+ I++ +K ++I +
Sbjct: 178 RRITDGLETETDQPQRATVNTGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRIVEN 237
Query: 88 --AIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
+A +++RV+ I + + D+ A++ IA+ + K
Sbjct: 238 VPPVALNDDRVVEIQGEPH-----DSHKAVELIASHLRK 271
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY-GGKGEQKHRHIQFGGSAQQVAL 310
VT M + S +IG G++IS IR SGA I + G GE ++ GSA QV
Sbjct: 382 VTHSMQVPLSYADAVIGAAGASISYIRRHSGATISIQEGAPGEMT---VEITGSASQVQT 438
Query: 311 AKQRVDEYI 319
A+Q + ++
Sbjct: 439 AQQLIKNFM 447
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 45/179 (25%)
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL-AP 181
+K D+ K G + R+L+ ++ G +IG G I+K+ S A I +L P
Sbjct: 87 VKQHDATVPDDKKWPGWPGESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGP 146
Query: 182 NQLPLCASAHESDRVVQISG------DVPAVLNALVEIGNQL-------RENPPRQVISI 228
+P +R V IS ++P ++ L+ + ++ + P R ++
Sbjct: 147 PAVP--------ERAVMISAKDEPDTELPPAVDGLLRVHRRITDGLETETDQPQRATVNT 198
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P +L+ S G LIG+ G+ I I++ S ++++
Sbjct: 199 GPT-----------------------RLLVPASQAGSLIGKQGATIKSIQDASKCVLRI 234
>gi|410970837|ref|XP_003991883.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Felis catus]
Length = 493
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 130/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 273
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A VEI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 274 AEVEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPF--PHHHSYPEQEIVNLFIPTQ 331
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 332 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 362
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 310 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 369
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 370 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 417
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 418 VIGKGGKTVNELQNLTSAEVIV 439
>gi|426340777|ref|XP_004034304.1| PREDICTED: poly(rC)-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
Length = 360
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP-PRQVI 226
+R S I L L +++ + G AV V QL + P
Sbjct: 127 IRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPTEVTKLQQLSSHAVPFATP 186
Query: 227 SISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
S+ P + +Q E L+ L+G +IGR GS IS IR SGA IK
Sbjct: 187 SVVPGLDPGTQTSSQ-------------EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIK 233
Query: 287 VYG---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
+ G GE RH+ GS +ALA +Y+ + ++ A
Sbjct: 234 IGNQAEGAGE---RHVTITGSPVSIALA-----QYLITACLETA 269
>gi|410951301|ref|XP_003982336.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Felis catus]
Length = 360
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 128/290 (44%), Gaps = 50/290 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R S I L L +++ + G AV A V QL +
Sbjct: 127 IRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGH------- 179
Query: 228 ISPAYNYSAIRPAQPFVEPT-------SADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
A PF P+ + E L+ L+G +IGR GS IS IR
Sbjct: 180 ------------AVPFASPSMVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 227
Query: 281 SGAMIKVYG---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
SGA IK+ G GE RH+ GS +ALA +Y+ + ++ A
Sbjct: 228 SGAHIKIGNQAEGAGE---RHVTITGSPVSIALA-----QYLITACLETA 269
>gi|328781397|ref|XP_392536.4| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Apis
mellifera]
Length = 482
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 30/213 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR + G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 56 KREADAGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 115
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 116 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 159
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+R+L+ SQAGC+IG G I++LR +GA I I + H +DR++ I G
Sbjct: 160 --DVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSH------CCPHSTDRLISICG 211
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+ + E+ ++ +P + V + +N+
Sbjct: 212 KPTTCIECIRELIATIKTSPLKGVNNPYDPHNF 244
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 32/144 (22%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D+P
Sbjct: 84 LRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSDLP 134
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
VL L E+ L EN R +D + ML+ +S G
Sbjct: 135 TVLQVLNEVVPNLEENGSRH-----------------------GSDEIDVRMLVHQSQAG 171
Query: 265 GLIGRCGSNISRIRNESGAMIKVY 288
+IG+ G I +R ++GA IK+Y
Sbjct: 172 CIIGKGGLKIKELREKTGARIKIY 195
>gi|195336152|ref|XP_002034707.1| GM22026 [Drosophila sechellia]
gi|194126677|gb|EDW48720.1| GM22026 [Drosophila sechellia]
Length = 345
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|345796407|ref|XP_003434167.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2
isoform 1 [Canis lupus familiaris]
Length = 488
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 130/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 109 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 166
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 167 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 212
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 213 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 268
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A VEI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 269 AEVEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPF--PHHHSYPEQEIVNLFIPTQ 326
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 327 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 357
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 305 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 364
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 365 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 412
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 413 VIGKGGKTVNELQNLTSAEVIV 434
>gi|147818880|emb|CAN73780.1| hypothetical protein VITISV_042181 [Vitis vinifera]
Length = 637
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 117/220 (53%), Gaps = 30/220 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ P +IG+VIG+ G I+ +RE + A +++ D A +E +I ++S ++
Sbjct: 302 SRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTES 361
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
D++ S A A+ + A I +DD IRLL+ GC+IG SG
Sbjct: 362 VDDLKSMAVEAVLLLQAKINDEDDDTV-------------AIRLLVPSKIIGCIIGKSGS 408
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R + A + I + ++ P CA A+ D ++++ G+V +V +ALV+I +LR++ +
Sbjct: 409 IINEIRKRTRADVRI-SKSERPKCADAN--DELIEVVGEVGSVRDALVQIVLRLRDDALK 465
Query: 224 Q-------------VISISPAYNYSAIRPAQPFVEPTSAD 250
+ S + S++ P+ P V P S D
Sbjct: 466 DRDTGHNTSAGTDSLYSGGAGLSVSSVLPSAPPVAPLSYD 505
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 122/262 (46%), Gaps = 33/262 (12%)
Query: 26 SGKRRREDGEIEGSDP--KRRAKAQD-------VLFRIIVPSRQIGKVIGKEGHRIQKIR 76
+GKR R + +G + KRR +D +++RI+ P IG VIGK G I IR
Sbjct: 4 TGKRFRSQRDQDGDNKIQKRRVNERDEKGSDELIVYRILCPDGVIGSVIGKSGKVINSIR 63
Query: 77 EETKATIKIADAIARHEERVIIISSK-------------DNDNVVSDAENALQQIAALIL 123
++T+A IK+ D ++RVI I ++ + A++AL ++ A I+
Sbjct: 64 QDTRAKIKVVDPFPGAKDRVITIYCYVKEKEEVEVDDEFNDKQPLCPAQDALLKVHAAIV 123
Query: 124 KDDDSNSEAS--KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
N+ AS ++L+ SQ+ +IG +G I++LR+ + A I I A
Sbjct: 124 -----NAVASLENSDKKKKDKEECQILVPSSQSANVIGKAGATIKRLRSKTRANIKITAK 178
Query: 182 NQL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS---PAYNYSAI 237
+ P + A E D V I+GD AV AL I + + PR+ I + P S I
Sbjct: 179 DSTDPSHSCAMEFDNFVLIAGDSEAVKKALFAISAIMYKFTPREEIPLDTTVPEAPPSII 238
Query: 238 RPAQPFVEPTSADYVTFEMLIS 259
P+ + P Y + + ++S
Sbjct: 239 IPSDVPIYPAGGFYPSADSIVS 260
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
TF+M+I + VG ++G+ G+NI+ IR SGA+I++ K + R G+ +Q A+
Sbjct: 568 TFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALISGTPEQKRTAE 627
Query: 313 QRVDEYIYS 321
+ +I +
Sbjct: 628 NLIQAFIMA 636
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
F +++P+ +GKV+GK G I IR+ + A I+I+D+ + +RV +IS
Sbjct: 569 FDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALIS 617
>gi|426258298|ref|XP_004022751.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
Length = 330
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 123/286 (43%), Gaps = 44/286 (15%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 24 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 83
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 84 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 141
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + +DR
Sbjct: 142 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPQSTDR 195
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 196 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 244
Query: 256 MLIS--------------ESLVGGLIGRCGSNISRIRNESGAMIKV 287
M+ E L G +IG+ G I +IR+ESGA IK+
Sbjct: 245 MMFDDRRGRPVGFPMRGREDLAGSIIGKGGQRIKQIRHESGASIKI 290
>gi|350409768|ref|XP_003488838.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
impatiens]
Length = 439
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 30/213 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR + G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 49 KREADAGTMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 108
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 109 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 152
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+R+L+ SQAGC+IG G I++LR +GA I I + H +DR++ I G
Sbjct: 153 --DVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSH------CCPHSTDRLISICG 204
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+ + E+ ++ +P + V + +N+
Sbjct: 205 KPNTCIECIRELIATIKTSPLKGVNNPYDPHNF 237
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 32/144 (22%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D+P
Sbjct: 77 LRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSDLP 127
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
VL L E+ L EN R +D + ML+ +S G
Sbjct: 128 TVLQVLNEVVPNLEENGSRH-----------------------GSDEIDVRMLVHQSQAG 164
Query: 265 GLIGRCGSNISRIRNESGAMIKVY 288
+IG+ G I +R ++GA IK+Y
Sbjct: 165 CIIGKGGLKIKELREKTGARIKIY 188
>gi|8699624|gb|AAF78762.1|AF275629_1 bancal protein [Drosophila melanogaster]
Length = 508
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|340718655|ref|XP_003397779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
terrestris]
Length = 466
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 30/213 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR + G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 35 KREADAGTMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 94
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 95 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 138
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+R+L+ SQAGC+IG G I++LR +GA I I + H +DR++ I G
Sbjct: 139 --DVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSH------CCPHSTDRLISICG 190
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+ + E+ ++ +P + V + +N+
Sbjct: 191 KPNTCIECIRELIATIKTSPLKGVNNPYDPHNF 223
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 32/144 (22%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D+P
Sbjct: 63 LRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSDLP 113
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
VL L E+ L EN R +D + ML+ +S G
Sbjct: 114 TVLQVLNEVVPNLEENGSRH-----------------------GSDEIDVRMLVHQSQAG 150
Query: 265 GLIGRCGSNISRIRNESGAMIKVY 288
+IG+ G I +R ++GA IK+Y
Sbjct: 151 CIIGKGGLKIKELREKTGARIKIY 174
>gi|281363839|ref|NP_001163216.1| bancal, isoform E [Drosophila melanogaster]
gi|272432584|gb|ACZ94488.1| bancal, isoform E [Drosophila melanogaster]
Length = 493
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|291402366|ref|XP_002717547.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 334
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 79/333 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G + K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESV-KMREESGARINISEG--NCPERIITLAGPTN----- 65
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 66 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 120
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 121 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 174
Query: 223 RQVI-------SISP-------AYN---------------------------------YS 235
+ V S SP AY +S
Sbjct: 175 KGVTIPYWPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFS 234
Query: 236 AIRPAQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
I + P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 235 GIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 294
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 295 PVEGSTDRQVTITGSAASISLAQYLINVRLSSE 327
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 242 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 301
Query: 95 RVIIIS 100
R + I+
Sbjct: 302 RQVTIT 307
>gi|45552763|ref|NP_995906.1| bancal, isoform C [Drosophila melanogaster]
gi|45445681|gb|AAM68389.2| bancal, isoform C [Drosophila melanogaster]
gi|261338783|gb|ACX70073.1| RE05515p [Drosophila melanogaster]
Length = 502
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 8 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 66
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 67 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 106
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 107 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 161
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 162 AVREVITLTRDTPIKGAIHNYDPMNFDRV 190
>gi|6006748|gb|AAF00596.1|AF142631_1 hnRNP K protein homolog [Drosophila melanogaster]
Length = 490
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|195585141|ref|XP_002082349.1| GD11524 [Drosophila simulans]
gi|194194358|gb|EDX07934.1| GD11524 [Drosophila simulans]
Length = 496
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|449525363|ref|XP_004169687.1| PREDICTED: KH domain-containing protein At4g18375-like, partial
[Cucumis sativus]
Length = 531
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 123/263 (46%), Gaps = 41/263 (15%)
Query: 25 VSGKR----RREDGEIEGSDPKRRAKAQD-------VLFRIIVPSRQIGKVIGKEGHRIQ 73
VSGKR R +G+ +G KRR QD V++RI+ P IG VIGK G I
Sbjct: 2 VSGKRPYGQRDYNGDNKGY--KRRITEQDDWVSDELVVYRILCPDEVIGSVIGKSGKVIN 59
Query: 74 KIREETKATIKIADAIARHEERVIIISS--KDNDNV-VSDAENALQQIAA---LILK--- 124
IR+ET+A IK+ D ++RVI I KD ++V V D N Q + A +LK
Sbjct: 60 SIRQETRAKIKVVDPFPGAKDRVITIFCFVKDKEDVEVDDEFNDRQTLCAAQDALLKVHA 119
Query: 125 -DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
++ + A + ++LI SQ+ +IG +G I+KLR+ + +I I +
Sbjct: 120 AIANALASAGDLDRKQRDKEQCQILIPSSQSANVIGKAGSTIKKLRSKTRTSIKISPKDA 179
Query: 184 L-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------------- 229
P+ + A + D I+G+ V AL I + + + PPR+ I +
Sbjct: 180 TDPIHSCAMDFDNFAVIAGEPEGVRRALFAISSIMYKFPPREEIPLDTNVNEAPPNIIIP 239
Query: 230 ---PAYNYSAIRP-AQPFVEPTS 248
P Y+ + P A P + P S
Sbjct: 240 SDVPLYSAGGLYPSADPILPPRS 262
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 20/187 (10%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G I G P +++++ R++ P IG+VIGK G I+ IR+ + A +++ D +
Sbjct: 297 GGISGHPP-----SEELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCD 351
Query: 94 ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
E +I ISS ++ D ++ L+L++ ++ E V +RLLI
Sbjct: 352 ECIITISSFES----LDDLKSMAVETVLLLQEKINDDEGGTV--------IMRLLIPSKV 399
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
GC+IG SG I ++R S+ A I I ++L CAS+ SD +V+++G V V +ALV+I
Sbjct: 400 IGCIIGKSGSIINEIRKSTRADIRISKGDKLK-CASS--SDELVEVTGKVGCVRDALVQI 456
Query: 214 GNQLREN 220
+LR++
Sbjct: 457 VLRLRDD 463
>gi|45552765|ref|NP_995907.1| bancal, isoform A [Drosophila melanogaster]
gi|442624312|ref|NP_001261102.1| bancal, isoform F [Drosophila melanogaster]
gi|21626883|gb|AAF57450.2| bancal, isoform A [Drosophila melanogaster]
gi|189182182|gb|ACD81867.1| LP16172p [Drosophila melanogaster]
gi|440214543|gb|AGB93634.1| bancal, isoform F [Drosophila melanogaster]
Length = 496
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|301759725|ref|XP_002915743.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Ailuropoda melanoleuca]
Length = 556
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 130/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A VEI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 337 AEVEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPF--PHHHSYPEQEIVNLFIPTQ 394
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 395 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 425
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|449433573|ref|XP_004134572.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 625
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 123/263 (46%), Gaps = 41/263 (15%)
Query: 25 VSGKR----RREDGEIEGSDPKRRAKAQD-------VLFRIIVPSRQIGKVIGKEGHRIQ 73
VSGKR R +G+ +G KRR QD V++RI+ P IG VIGK G I
Sbjct: 2 VSGKRPYGQRDYNGDNKGY--KRRITEQDDWVSDELVVYRILCPDEVIGSVIGKSGKVIN 59
Query: 74 KIREETKATIKIADAIARHEERVIIISS--KDNDNV-VSDAENALQQIAA---LILK--- 124
IR+ET+A IK+ D ++RVI I KD ++V V D N Q + A +LK
Sbjct: 60 SIRQETRAKIKVVDPFPGAKDRVITIFCFVKDKEDVEVDDEFNDRQTLCAAQDALLKVHA 119
Query: 125 -DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
++ + A + ++LI SQ+ +IG +G I+KLR+ + +I I +
Sbjct: 120 AIANALASAGDLDRKQRDKEQCQILIPSSQSANVIGKAGSTIKKLRSKTRTSIKISPKDA 179
Query: 184 L-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------------- 229
P+ + A + D I+G+ V AL I + + + PPR+ I +
Sbjct: 180 TDPIHSCAMDFDNFAVIAGEPEGVRRALFAISSIMYKFPPREEIPLDTNVNEAPPNIIIP 239
Query: 230 ---PAYNYSAIRP-AQPFVEPTS 248
P Y+ + P A P + P S
Sbjct: 240 SDVPLYSAGGLYPSADPILPPRS 262
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 22/188 (11%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G I G P +++++ R++ P IG+VIGK G I+ IR+ + A +++ D +
Sbjct: 297 GGISGHPP-----SEELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCD 351
Query: 94 ERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
E +I ISS ++ D++ S A + L+L++ ++ E V +RLLI
Sbjct: 352 ECIITISSFESLDDLKSMAVETV-----LLLQEKINDDEGGTV--------IMRLLIPSK 398
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
GC+IG SG I ++R S+ A I I ++L CAS+ SD +V+++G V V +ALV+
Sbjct: 399 VIGCIIGKSGSIINEIRKSTRADIRISKGDKLK-CASS--SDELVEVTGKVGCVRDALVQ 455
Query: 213 IGNQLREN 220
I +LR++
Sbjct: 456 IVLRLRDD 463
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
+ EMLI + G +IG+ G+NI+ IR SGA+I++ K + R G+++Q A+
Sbjct: 556 SLEMLIPANAAGKVIGKGGANIANIRKISGALIEISDSKSSRGDRIALISGTSEQKRTAE 615
Query: 313 QRVDEYIYS 321
+ +I +
Sbjct: 616 NLIQAFIMA 624
>gi|6687391|emb|CAB64936.1| heterogeneous nuclear ribonucleoprotein (hnRNP) [Drosophila
melanogaster]
Length = 496
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 26/209 (12%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R + E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMNDEGEGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD- 60
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
++ ER I IS +D E+ L+ I ++ ++ + + +RLL
Sbjct: 61 -SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLL 100
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 IHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIE 155
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 AVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|383849051|ref|XP_003700160.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Megachile rotundata]
Length = 460
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 30/213 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR + G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 21 KREADAGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 80
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 81 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 124
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+R+L+ SQAGC+IG G I++LR +GA I I + C H +DR++ I G
Sbjct: 125 --DVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYS-----HCC-PHSTDRLISICG 176
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
++ + E+ ++ +P + + + +N+
Sbjct: 177 KPSTCIDCIRELIATIKTSPLKGMNNPYDPHNF 209
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 32/144 (22%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D+P
Sbjct: 49 LRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSDLP 99
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
VL L E+ L EN R +D + ML+ +S G
Sbjct: 100 TVLQVLNEVVPNLEENGSRH-----------------------GSDEIDVRMLVHQSQAG 136
Query: 265 GLIGRCGSNISRIRNESGAMIKVY 288
+IG+ G I +R ++GA IK+Y
Sbjct: 137 CIIGKGGLKIKELREKTGARIKIY 160
>gi|194753778|ref|XP_001959187.1| GF12183 [Drosophila ananassae]
gi|190620485|gb|EDV36009.1| GF12183 [Drosophila ananassae]
Length = 511
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 27/210 (12%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR D E EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KREMIDTE-EGPQDQKRNRRTEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD 60
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
++ ER I IS +D E+ L+ I ++ ++ + + +RL
Sbjct: 61 --SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRL 99
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
LI S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 100 LIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVI 154
Query: 208 NALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P R I N+ +
Sbjct: 155 EAVREVITLTRDTPIRGAIHNYDPMNFDRV 184
>gi|296491333|tpg|DAA33396.1| TPA: insulin-like growth factor 2 mRNA binding protein 2 isoform 2
[Bos taurus]
Length = 556
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 130/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A +EI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPF--PHHHSYPEQEIVNLFIPTQ 394
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 395 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 425
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|386771593|ref|NP_730700.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|442634089|ref|NP_001262197.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
gi|383292066|gb|AAN12194.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|440216174|gb|AGB94890.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
Length = 359
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 150/341 (43%), Gaps = 78/341 (22%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
VS NA+ LI K + ++ KV + IRL++ SQ G L
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEFNDVGKVGKTQIP---IRLIVPASQCGSL 117
Query: 158 IGMSGQNIEKLRNSSGATIVI---LAPNQ----LPLCASAHESDRVV------------- 197
IG SG I+++R ++G +I + + PN + L SA + + +
Sbjct: 118 IGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAEQITQCIYQICLVMLESPPR 177
Query: 198 ----------QISGDVPAVL---NALVEIGN------QLRENPPRQVIS-----ISPA-- 231
Q++G P +L A GN ++ +NP + + ++PA
Sbjct: 178 GATIPYRPKPQVTG--PVILANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPAST 235
Query: 232 --YNYSAI--------RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
N++A+ R A P A EM +S L+G +IG+ G+ I+ IR S
Sbjct: 236 GGINHTALAALAGSQLRTANPA---NRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQIS 292
Query: 282 GAMIKVYGG---KGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
GAMI++ +G R I G+ VALA+ ++ I
Sbjct: 293 GAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMRI 333
>gi|302143921|emb|CBI23026.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 76/351 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E G +D ++ +D++FRI+ P ++ V+G+ I+ ++ E +K+AD +A
Sbjct: 234 ESGAAPIADNAQQFLGEDIVFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAG 293
Query: 92 HEERVIIISSKDN-DNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLL 148
E++I+I+S++ D+ + A+ AL I I L D N T RLL
Sbjct: 294 SNEQIIVITSEEGPDDELFPAQEALLHIQTRIVNLLPDKEN------------VITTRLL 341
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
+ S+ GC G ++ ++R +GA I I+ QLP S +D +++I G++ A +
Sbjct: 342 VPSSEIGCFEGRDC-SLSEMRRLTGANIQIVPREQLPAFISG--TDELLEIVGEIKAARD 398
Query: 209 ALVEIGNQLR----------ENPPRQV-----ISISPAYNYSAIRPAQPFVEPTSADY-- 251
ALVE+ ++LR + PP + + S N + R +P + +Y
Sbjct: 399 ALVEVTSRLRSYLYREFFPKDMPPPSISAPGSLEASSPNNITPAREGHTASDPPTTNYQN 458
Query: 252 -----------------------------------------VTFEMLISESLVGGLIGRC 270
T E++I E V LI R
Sbjct: 459 VQAIASVQPSKDSGGTGGETVKQNETVPSVLNRIPVTLVTRSTLEVVIPEHAVPKLITRS 518
Query: 271 GSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
+ +++I SGA + + + E + IQ G+ +Q A+ + +I S
Sbjct: 519 KNKLAQISEWSGANVTLLEDRLEATGKIIQISGTPEQTEKAQSLLQGFILS 569
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 23/176 (13%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDNVV 108
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +D + +
Sbjct: 6 YRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 65
Query: 109 ---SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
S A+ AL I IL+ D V+ HV GCL+G G+ I
Sbjct: 66 PQFSPAQEALFMIHDRILESDAGFGNGMVVSRMHV--------------GCLLGKGGKII 111
Query: 166 EKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
E++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I ++LRE+
Sbjct: 112 EQMRIETKTQIRILPRDHNLPRCVSM--SEEIVQVVGDVNAVKNAIANISSRLRES 165
>gi|356522258|ref|XP_003529764.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 559
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 109/202 (53%), Gaps = 16/202 (7%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E G R +DV+F+++ ++G +IGK G ++ ++ ET A+I+I +A +E
Sbjct: 179 ESAGHSSHRMFLEEDVVFKLLCHHEKVGSLIGKGGSVVRALQNETGASIQIVEAGPDSDE 238
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
RV++IS+++ S+ +++ Q A + + + +++ AA +LL+ Q
Sbjct: 239 RVVVISARE----TSEQKHSPAQEAVIRV-----HCRLTEIGFEPSAAVVAKLLVRSPQV 289
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCL+G G I ++R +GA+I I + Q+ + +++ VVQ+ G + +V +AL I
Sbjct: 290 GCLLGKGGLVISEMRRVTGASIRIFSKEQIKYIS---QNEEVVQVIGSLQSVQDALFHIT 346
Query: 215 NQLRENPPRQVISISPAYNYSA 236
+++RE + I N+SA
Sbjct: 347 SRIRET----IFPIRTPPNFSA 364
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 121/259 (46%), Gaps = 50/259 (19%)
Query: 42 KRR---AKAQDVLFRIIVPSRQIGKV--IGKEGHRIQKIREETKATIKIADAIARHEERV 96
KRR A D +FRI+ P+ + V IG +G +I + + + EERV
Sbjct: 8 KRRHAPPAAPDAVFRIVCPAAKTEDVATIGGDGAKI------------LVEDLVSAEERV 55
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
++I ++ S A+ AL ++ + ++ NS S +L+ Q GC
Sbjct: 56 VVIVGEE-----SAAQVALVRVFERTVDEETKNSTVS-----------CKLVAPSYQVGC 99
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
++G G+ +EK+R +GA I +L +Q PL E +QI+G+ AV A++ +
Sbjct: 100 VLGRGGKIVEKIRQDTGAHIRVLPKDQPPLPPPPGE--EFIQITGNFGAVKKAVLSVSAC 157
Query: 217 LRENPPRQVISISP-------AYNYSAIRPAQ-PFVEPTSADYVTFEMLISESLVGGLIG 268
+N + P Y+ SA + F+E + V F++L VG LIG
Sbjct: 158 FYDN---NSGAFKPLDHHSRGCYSESAGHSSHRMFLE----EDVVFKLLCHHEKVGSLIG 210
Query: 269 RCGSNISRIRNESGAMIKV 287
+ GS + ++NE+GA I++
Sbjct: 211 KGGSVVRALQNETGASIQI 229
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 126/302 (41%), Gaps = 54/302 (17%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
K V +++ PS Q+G V+G+ G ++KIR++T A I++ + + + + ++
Sbjct: 81 TKNSTVSCKLVAPSYQVGCVLGRGGKIVEKIRQDTGAHIRV---LPKDQPPLPPPPGEEF 137
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKV-----------AAGHVAAN-------TIR 146
+ + + + ++ D+NS A K +AGH + +
Sbjct: 138 IQITGNFGAVKKAVLSVSACFYDNNSGAFKPLDHHSRGCYSESAGHSSHRMFLEEDVVFK 197
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LL + G LIG G + L+N +GA+I I+ A +RVV IS
Sbjct: 198 LLCHHEKVGSLIGKGGSVVRALQNETGASIQIVE-------AGPDSDERVVVISAR---- 246
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGL 266
E Q VI + R + EP++A V ++L+ VG L
Sbjct: 247 -----ETSEQKHSPAQEAVIRVH-------CRLTEIGFEPSAA--VVAKLLVRSPQVGCL 292
Query: 267 IGRCGSNISRIRNESGAMIKVYGGKG----EQKHRHIQFGGSAQQVALA----KQRVDEY 318
+G+ G IS +R +GA I+++ + Q +Q GS Q V A R+ E
Sbjct: 293 LGKGGLVISEMRRVTGASIRIFSKEQIKYISQNEEVVQVIGSLQSVQDALFHITSRIRET 352
Query: 319 IY 320
I+
Sbjct: 353 IF 354
>gi|348518109|ref|XP_003446574.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 349
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 140/331 (42%), Gaps = 80/331 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+RE++ A I I++ ER++ I+ +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEG--NCPERIVTITGP------T 67
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 68 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI---------------- 213
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGAPEAIIQCVKQICVVLLESPPKGATIPY 180
Query: 214 ------------GNQLRENP---------------PRQVISI------------------ 228
G Q+R +P P +I
Sbjct: 181 RPKPASTPVIFSGGQVRADPLGASTANLSLLLQHQPLPAYTIQGQYAIPHPDLSKLHQLA 240
Query: 229 ---SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMI 285
+P PA P ++ S T E+ I L+G +IGR G+ I+ IR SGA I
Sbjct: 241 MQQTPFTPLGQTTPAFPGLD-ASNQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 299
Query: 286 KVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
K+ R I G+ ++LA+ ++
Sbjct: 300 KIANAMEGSSERQITITGTPANISLAQYLIN 330
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+ + P A Q + +P+ IG +IG++G +I +IR+ + A IKIA+A+
Sbjct: 250 GQTTPAFPGLDASNQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSS 309
Query: 94 ERVIIIS 100
ER I I+
Sbjct: 310 ERQITIT 316
>gi|356516077|ref|XP_003526723.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 647
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 25/250 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS----------- 100
+RI+ + G VIGK G I+ IR+ T A I + + + EER+I IS
Sbjct: 63 YRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRM 122
Query: 101 ---SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
S + ++ E L+ AA + +DD A + RL+++ GCL
Sbjct: 123 PSFSPAQEALLLIHERILESDAAFGVAEDDEEYGAGRGGGAGRDRVATRLVVSRMHVGCL 182
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NALV I ++
Sbjct: 183 LGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSM--SEEIVQVVGDVNAVKNALVIISSR 240
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE--SLVGGLIGRCGSNI 274
LRE+ R ++ + + + F P DYV S S+ G G GSN
Sbjct: 241 LRESQHRDR-----SHFHGRVHSPERFFSPDD-DYVPHVTSGSRRSSVDGASFGSRGSNT 294
Query: 275 SRIRNESGAM 284
+ N ++
Sbjct: 295 NSRNNNHPSL 304
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 101/188 (53%), Gaps = 22/188 (11%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++++FRI+ P ++ +IG+ ++ ++ E +K+ D + +E++III+S++ D+
Sbjct: 325 EELVFRILCPVEKVDLIIGESDGIVEFLQSEVGVDVKVTDPVGGSDEQIIIITSEEGPDD 384
Query: 107 VVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+ A+ AL +I L+L D++ T RL++ S+ CL G
Sbjct: 385 ELFPAQEALLHIQTRIVDLVLDKDNT--------------ITTRLVVPSSEIECLDG-KD 429
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
++ ++R +GA I IL + LPLC + ++D +VQI G++ A +A+VE+ ++LR
Sbjct: 430 VSLSEIRRLTGANIQILPRDDLPLCVA--KTDELVQIVGEIKAARDAVVEVTSRLRSYLY 487
Query: 223 RQVISISP 230
R P
Sbjct: 488 RDFFQRDP 495
>gi|225455340|ref|XP_002272224.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 661
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 76/351 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E G +D ++ +D++FRI+ P ++ V+G+ I+ ++ E +K+AD +A
Sbjct: 320 ESGAAPIADNAQQFLGEDIVFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAG 379
Query: 92 HEERVIIISSKDN-DNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLL 148
E++I+I+S++ D+ + A+ AL I I L D N T RLL
Sbjct: 380 SNEQIIVITSEEGPDDELFPAQEALLHIQTRIVNLLPDKEN------------VITTRLL 427
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
+ S+ GC G ++ ++R +GA I I+ QLP S +D +++I G++ A +
Sbjct: 428 VPSSEIGCFEGRDC-SLSEMRRLTGANIQIVPREQLPAFISG--TDELLEIVGEIKAARD 484
Query: 209 ALVEIGNQLR----------ENPPRQV-----ISISPAYNYSAIRPAQPFVEPTSADY-- 251
ALVE+ ++LR + PP + + S N + R +P + +Y
Sbjct: 485 ALVEVTSRLRSYLYREFFPKDMPPPSISAPGSLEASSPNNITPAREGHTASDPPTTNYQN 544
Query: 252 -----------------------------------------VTFEMLISESLVGGLIGRC 270
T E++I E V LI R
Sbjct: 545 VQAIASVQPSKDSGGTGGETVKQNETVPSVLNRIPVTLVTRSTLEVVIPEHAVPKLITRS 604
Query: 271 GSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
+ +++I SGA + + + E + IQ G+ +Q A+ + +I S
Sbjct: 605 KNKLAQISEWSGANVTLLEDRLEATGKIIQISGTPEQTEKAQSLLQGFILS 655
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 18/185 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDNVV 108
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +D + +
Sbjct: 69 YRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 128
Query: 109 ---SDAENALQQIAALILKDDDSNSEASKVAAGHVAAN---------TIRLLIAGSQAGC 156
S A+ AL I IL+ D R++++ GC
Sbjct: 129 PQFSPAQEALFMIHDRILESDAGFGNGFGGNGDDDDDFGPRGGGNRVATRMVVSRMHVGC 188
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I +
Sbjct: 189 LLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSM--SEEIVQVVGDVNAVKNAIANISS 246
Query: 216 QLREN 220
+LRE+
Sbjct: 247 RLRES 251
>gi|30684386|ref|NP_849406.1| KH domain-containing protein [Arabidopsis thaliana]
gi|24762211|gb|AAN64172.1| putative KH domain protein [Arabidopsis thaliana]
gi|332658635|gb|AEE84035.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 532
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS--------- 100
V++RI+ P +G VIGK G I IR TKA IK+ D + +RVI I
Sbjct: 36 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95
Query: 101 ---SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+K + + A++AL ++ I+ D+ N+ + V RLL+ SQ+ L
Sbjct: 96 IGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDD--NKECRLLVPFSQSSSL 153
Query: 158 IGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
IG +G+NI+++R + A++ +++ + P A E D VV ISG+ +V AL +
Sbjct: 154 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAI 213
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ + PR+ I P + S PA + P+
Sbjct: 214 MYKINPRENI---PLDSTSQDVPAASVIVPS 241
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 102/178 (57%), Gaps = 24/178 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSK 102
+++++++F+++ P I +VIGK G I++IRE + + I++ D+ + +E VII+++
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
++ D ++ A L+L++ ++ +A V ++LL++ GC+IG SG
Sbjct: 367 ES----PDDMKSMAVEAVLLLQEYINDEDAENVK--------MQLLVSSKVIGCVIGKSG 414
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I C S + D +V++SG+V +V +AL++I +LRE+
Sbjct: 415 SVINEIRKRTNANI----------CISKGKKDDLVEVSGEVSSVRDALIQIVLRLRED 462
>gi|297821485|ref|XP_002878625.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297324464|gb|EFH54884.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 633
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 70/296 (23%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV-- 107
R++ + IG +IG G+ + K+R ET I + + V+ I S+ N +V
Sbjct: 27 IRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNKSVLL 86
Query: 108 -------------------VSDAENALQQI---AALILKDDDSNSEASKVAAGHVAANTI 145
VS A+ AL ++ + ++L D V G
Sbjct: 87 TDRVGDFSGGEHEDWVTCDVSAAQTALIRVLERSWVVLAAKDGGG----VVDGEDEEAYC 142
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
+L +Q G ++G+ G+N+E +R SSGA I +L P P+C + +D ++QI+GDV A
Sbjct: 143 GILADRNQIGAVLGLGGKNVEWMRRSSGAMIRVLPP---PICGT--NTDELIQITGDVLA 197
Query: 206 VLNALVEIGNQLRENPP----RQVISISPAYN----------YSAIRPAQPFVEPTSADY 251
V ALV + +++NPP Q + I AY +S P P ++D
Sbjct: 198 VKKALVMVSTCIQDNPPVNGYPQPLCIK-AYESSTDGNSEDPHSEFFPNLRSSVPNASDS 256
Query: 252 --------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V F+++ + + GG+IG+ G+ I ++NE+GA I +
Sbjct: 257 ASSNRHLPAVYDEGNGTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISI 312
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 14/192 (7%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
EG+ +R+ V+F+II S G +IGK+G I+ ++ ET A+I I + ERV
Sbjct: 269 EGNGTERK-----VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISIGAPLKVSGERV 323
Query: 97 IIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
+ IS+++N ++ S A+NAL + A ++ D + G V +LL+ A
Sbjct: 324 VTISARENLESRYSHAQNALALVFARSVEIDVEKGLRPGLHNGAVVKT--KLLVPSQFAN 381
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G N E + ++GA + I NQ+ S E++ V++I G+ V AL + +
Sbjct: 382 SLVG--NGNREAII-ATGADVHIPVDNQILEWIS--ENEVVIEIKGEYGHVQKALTHVSS 436
Query: 216 QLREN-PPRQVI 226
+LREN P++V+
Sbjct: 437 KLRENLLPKKVL 448
>gi|194881635|ref|XP_001974928.1| GG22043 [Drosophila erecta]
gi|190658115|gb|EDV55328.1| GG22043 [Drosophila erecta]
Length = 498
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 26/201 (12%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D ++ ER
Sbjct: 10 EGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD--SQGPERT 67
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
I IS +D E+ L+ I ++ ++ + + +RLLI S AGC
Sbjct: 68 IQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLLIHQSLAGC 108
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+IG GQ I+++R+ G + + N P +DRVVQ G V++A+ E+
Sbjct: 109 VIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIDAVREVITL 163
Query: 217 LRENPPRQVISISPAYNYSAI 237
R+ P + I N+ +
Sbjct: 164 TRDTPIKGAIHNYDPMNFDRV 184
>gi|255561850|ref|XP_002521934.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538859|gb|EEF40458.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 704
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 98/173 (56%), Gaps = 18/173 (10%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FR++ P+ ++ KV+G+ + ++ + +K++D ++ +E++IIISS++ D+
Sbjct: 343 DLVFRMLCPADKVNKVVGESDGILDLLQNDIGVDVKVSDPVSGSDEQMIIISSEEGPDDE 402
Query: 108 VSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A+ AL I I L D N +K L+++ + GCL G G ++
Sbjct: 403 LFPAQEALLHIQTHIIDLVPDSDNIIKTK------------LIVSSGEIGCLEGRDG-SL 449
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ +GA I IL +LP C S E+D +VQI G++ A +ALVE+ ++LR
Sbjct: 450 SEMERLTGAKIQILPREKLPACVS--EADELVQIEGEIKAARDALVEVTSRLR 500
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN----- 106
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +
Sbjct: 77 YRILCHDMKAGGVIGKSGTIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 136
Query: 107 -VVSDAENALQQIAALILKDDD------SNSEASKVAAGHVAANT---IRLLIAGSQAGC 156
S A+ AL I IL+ D +N E G +N RL+++ GC
Sbjct: 137 PAFSPAQEALFLIHDRILESDGQFGMSYANEEDEYGGRGINNSNNRVATRLVVSRMHVGC 196
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I +
Sbjct: 197 LLGKGGKIIEQMRIETKTQIRILPRDHTLPRCVSM--SEEIVQVVGDVNAVKNAIAIISS 254
Query: 216 QLREN 220
+LRE+
Sbjct: 255 RLRES 259
>gi|195486812|ref|XP_002091665.1| GE12124 [Drosophila yakuba]
gi|194177766|gb|EDW91377.1| GE12124 [Drosophila yakuba]
Length = 497
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 26/201 (12%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
EG ++R + + RI++PS G VIGK G IQK+R + KAT+ + D ++ ER
Sbjct: 10 EGPQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD--SQGPERT 67
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
I IS +D E+ L+ I ++ ++ + + +RLLI S AGC
Sbjct: 68 IQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLLIHQSLAGC 108
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
+IG GQ I+++R+ G + + N P +DRVVQ G V++A+ E+
Sbjct: 109 VIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIDAVREVITL 163
Query: 217 LRENPPRQVISISPAYNYSAI 237
R+ P + I N+ +
Sbjct: 164 TRDTPIKGAIHNYDPMNFDRV 184
>gi|224097168|ref|XP_002310861.1| predicted protein [Populus trichocarpa]
gi|222853764|gb|EEE91311.1| predicted protein [Populus trichocarpa]
Length = 404
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 126/270 (46%), Gaps = 40/270 (14%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKDNDNVV 108
V FR++ + +IG +IG G I +IR ET + +A+ E R I+++ S + +
Sbjct: 26 VAFRVVCHASKIGALIGHSGSVISQIRLETGCLVHCEEAVKGSEHRAIVVAGSASPERKI 85
Query: 109 SDAENALQQIAA---LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ E+ +++A +++ + E V G LL SQ G ++G G+NI
Sbjct: 86 AVGEDETVEVSAAQEAVVRVLERMWEVDAVKDGGDCEGYCGLLANTSQIGAVVGREGRNI 145
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG-DVPAVLNALVEIGNQLRENPPRQ 224
++++ +SGA I IL PLCA + D+++QI+G AV A++ I + L++ PP +
Sbjct: 146 KRMKRASGAHIWILPA---PLCAL--KEDQLIQITGSSTVAVKKAVIAITSCLQDCPPYE 200
Query: 225 -----------------------------VISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
+ S+ P Y+ + I + +P V F
Sbjct: 201 KDEVDLSLEAVRRRRSGSSGDPHAEFFPHLCSLLPTYSEN-IATDKDHKKPNEQLQVQFR 259
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMI 285
M+ G +IG+ GS + ++N++GA I
Sbjct: 260 MICPHGAAGSIIGKGGSVVRALQNQTGASI 289
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 5/161 (3%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K+ + V FR+I P G +IGK G ++ ++ +T A+I +A I + R++ +
Sbjct: 246 DHKKPNEQLQVQFRMICPHGAAGSIIGKGGSVVRALQNQTGASIILAPPITNSDGRLVTV 305
Query: 100 SSKDN-DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
S+ +N ++ S A+NAL + A ++ D A + T LL+ ++ CLI
Sbjct: 306 SALENLESSHSPAQNALLLVFARSIEHDIER--ARSLGLIEEITVTATLLLPSNRVSCLI 363
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
G+ ++ ++GA I IL +Q CAS +D V+Q+
Sbjct: 364 ERGGRIDSEMIETTGADIQILQGDQFFYCAS--NNDVVLQV 402
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 239 PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRH 298
P QP +E V F ++ S +G LIG GS IS+IR E+G ++ +HR
Sbjct: 14 PRQPLIE-LQPGQVAFRVVCHASKIGALIGHSGSVISQIRLETGCLVHCEEAVKGSEHRA 72
Query: 299 IQFGGSA 305
I GSA
Sbjct: 73 IVVAGSA 79
>gi|449456987|ref|XP_004146230.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449517605|ref|XP_004165836.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 666
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 14/173 (8%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-D 105
+D++F+I+ P ++ VIG+ I+ +R + IK++D + E+++IISS + D
Sbjct: 331 GEDLVFKILCPIEKVDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNEQILIISSDEGPD 390
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ + A+ AL I I+ D + + T RLL+ S GCL G G +
Sbjct: 391 DELFPAQEALLHIQTRIV---DLVPDKENIV-------TTRLLVPSSDIGCLEGRDGSLL 440
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
E ++ +GA + I+ LP+ S +D +VQI GD+ A +ALVE+ ++LR
Sbjct: 441 E-MKRLTGANVHIVPREDLPMFVSG--ADELVQIIGDIKAARDALVELTSRLR 490
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
R + S P+ ++ +RI+ + G VIGK G I+ IR+ T A I + + +
Sbjct: 40 RHRGNAVRPSKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELV 99
Query: 90 ARHEERVIIISS---KDNDN---VVSDAENALQQIAALIL-----------------KDD 126
EER+I IS +D + S A+ AL I IL ++D
Sbjct: 100 PGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEED 159
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LP 185
D G RL+++ GCL+G G+ IE++R + I IL + LP
Sbjct: 160 DYGGVRGGGGGGCGGRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLP 219
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
C S S+ +VQI GD AV A+ + ++LRE+
Sbjct: 220 RCISM--SEEIVQIVGDTNAVKKAIAIVSSRLRES 252
>gi|7486302|pir||T04533 hypothetical protein F28J12.30 - Arabidopsis thaliana
gi|2832642|emb|CAA16717.1| putative protein [Arabidopsis thaliana]
gi|7268630|emb|CAB78839.1| putative protein [Arabidopsis thaliana]
Length = 846
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS--------- 100
V++RI+ P +G VIGK G I IR TKA IK+ D + +RVI I
Sbjct: 344 VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 403
Query: 101 ---SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+K + + A++AL ++ I+ D+ N+ + V RLL+ SQ+ L
Sbjct: 404 IGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDD--NKECRLLVPFSQSSSL 461
Query: 158 IGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
IG +G+NI+++R + A++ +++ + P A E D VV ISG+ +V AL +
Sbjct: 462 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAI 521
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ + PR+ I P + S PA + P+
Sbjct: 522 MYKINPRENI---PLDSTSQDVPAASVIVPS 549
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 104/188 (55%), Gaps = 30/188 (15%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSK 102
+++++++F+++ P I +VIGK G I++IRE + + I++ D+ + +E VII+++
Sbjct: 615 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 674
Query: 103 D-------NDNVVSDAENALQQI---AALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
+ V + + ++ + A L+L++ ++ +A V ++LL++
Sbjct: 675 EILFCCLSTPFVFMQSPDDMKSMAVEAVLLLQEYINDEDAENVK--------MQLLVSSK 726
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
GC+IG SG I ++R + A I C S + D +V++SG+V +V +AL++
Sbjct: 727 VIGCVIGKSGSVINEIRKRTNANI----------CISKGKKDDLVEVSGEVSSVRDALIQ 776
Query: 213 IGNQLREN 220
I +LRE+
Sbjct: 777 IVLRLRED 784
>gi|348502908|ref|XP_003439009.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 324
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 146/321 (45%), Gaps = 65/321 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTT----- 66
Query: 110 DAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + + +I L++D S S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ---SIFKAFSMIIEKLEEDISTSMTNSTATSKPPV-TMRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV-I 226
+R S+GA + + A + LP + ++R + ++G +++ + +I + E+PP+ V I
Sbjct: 123 IRESAGAQVQV-AGDMLP-----NSTERAITVAGTPQSIIECVKQICIVMLESPPKGVTI 176
Query: 227 SISPAYNYSAIRPA--------------QPFVE--PT----------------------- 247
P + S + A QP V P+
Sbjct: 177 PYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDVSEGPSLTKLHQLAMQQSPFPIAHSNQGF 236
Query: 248 ------SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQF 301
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R +
Sbjct: 237 QAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 296
Query: 302 GGSAQQVALAKQRVDEYIYSQ 322
GS ++LA+ ++ + S+
Sbjct: 297 TGSHASISLAEYLINARLSSE 317
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 26/179 (14%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
++S V G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DSSLVEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+R++ ++G ++ A I +L E+ IS S N +A TS
Sbjct: 56 ---ERIITLAGPTTSIFKAFSMIIEKLEED-----ISTS-MTNSTA----------TSKP 96
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQV 308
VT +++ S G LIG+ G I IR +GA ++V G R I G+ Q +
Sbjct: 97 PVTMRLVVPASQCGSLIGKGGCKIKEIRESAGAQVQVAGDMLPNSTERAITVAGTPQSI 155
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 242 ASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 297
>gi|395839831|ref|XP_003792779.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 4 [Otolemur garnettii]
Length = 574
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 45/276 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+ V I ++
Sbjct: 186 QARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHAT 245
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ D A ++ +++L G LIG
Sbjct: 246 PEGTS------EACRMILEIMQKEADETKLAEEIP--------LKILAHNGLVGRLIGKE 291
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + +G I I + L S + +R + + G V A NA +EI +LRE
Sbjct: 292 GRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACANAEIEIMKKLREAF 347
Query: 222 PRQVISIS------PAYNYSAI-----------RPAQPFVEPTSADYVTF--------EM 256
+++++ P N SA+ P+ P P +A Y F +
Sbjct: 348 ENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPSGPRGAPPAAPYHPFAYPEQEIVNL 407
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
I VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 408 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG 443
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVS 109
+ + +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 404 IVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF-- 461
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +I + +++ N + H+ + S AG +IG G+ + +L+
Sbjct: 462 ---KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQ 511
Query: 170 NSSGATIVI 178
N + A +++
Sbjct: 512 NLTSAEVIV 520
>gi|115475229|ref|NP_001061211.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|38636959|dbj|BAD03220.1| putative KH domain protein [Oryza sativa Japonica Group]
gi|113623180|dbj|BAF23125.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|215695475|dbj|BAG90642.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 441
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 149/336 (44%), Gaps = 79/336 (23%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
+++ R++ P+ +IG VIGK G I+ IR+E+ A I + D+ EE +I I+S +
Sbjct: 121 ELVLRVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNE---AT 177
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA++A + A L+L+ SK+ + +RLL+ G GCLIG G + +
Sbjct: 178 DDAKSAAVE-AVLLLQ--------SKINDDNEGKMNLRLLVPGKVIGCLIGKGGSIVNDM 228
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ---- 224
R+ + A I I + + P AS+ SD +V++ G+V + +ALV+I +LR++ R
Sbjct: 229 RSKTKAAIYI-SKGEKPRKASS--SDELVEVFGEVENLRDALVQIVLRLRDDVLRDSVDR 285
Query: 225 ----------VISISPAYNYSAIRPA-QPF--------------------VEPTSADY-- 251
V + P Y S PA P+ V P S+ Y
Sbjct: 286 QNSEKDGKLTVATTDPLYASSYPLPALLPYRQQITPLGYDHRGDIERGLEVYPHSSLYGY 345
Query: 252 -------------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
EM I S + ++G+ G+N+ I SGA I+
Sbjct: 346 SSLQAIDDGYSAVSSYASKGYGGRPPHMEMTIPASGLSKVMGKHGTNLDNIIKISGAHIE 405
Query: 287 VYGGKGEQKHRHI-QFGGSAQQVALAKQRVDEYIYS 321
+ K +H H+ + G+ +Q A+ + +I S
Sbjct: 406 IIESK-SSRHGHVARISGTTEQKQSAENLIKAFIMS 440
>gi|388500506|gb|AFK38319.1| unknown [Lotus japonicus]
Length = 437
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 141/305 (46%), Gaps = 78/305 (25%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+++++++ R++ PS +IG+VIG+ G I+ +R+ + I++ D+ A H+E +III++ ++
Sbjct: 115 SQSEELIIRMLCPSNKIGRVIGRGGSTIKSMRQASGTRIEVDDSKANHDECLIIITTTES 174
Query: 105 -DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
++ S A A+ I I +DD+ +I+LL+ GC+IG SG
Sbjct: 175 PSDLKSMAVEAVLLIQGKISDEDDTEV-------------SIQLLVPSKVIGCIIGKSGS 221
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I ++R + A I I ++ P CA + D +V++ G + V +AL++I +LR++ R
Sbjct: 222 IINEIRKRTRADIRISKGDK-PKCADVN--DELVEVGGAIDCVRDALIQIILRLRDDVLR 278
Query: 224 Q-------------VISISPAYNYSAIRP-----AQPFVEPTSADYVT------------ 253
+ + S AY+ + P A P V A+ T
Sbjct: 279 ERDTGHNPTIGGESLYSGGAAYSLPPMLPSVSSVAAPMVYDQRAESATGMGMLSSSSLYG 338
Query: 254 -------------------------------FEMLISESLVGGLIGRCGSNISRIRNESG 282
++LI + VG ++G+ G+NI+ IR SG
Sbjct: 339 YGSLSQMWESGYGSISSYPTKLYGSLPPPSTLDILIPANAVGKVLGKGGANIANIRKISG 398
Query: 283 AMIKV 287
A I++
Sbjct: 399 ATIEI 403
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
I++P+ +GKV+GK G I IR+ + ATI+I+DA AR +R+ +IS + A
Sbjct: 370 LDILIPANAVGKVLGKGGANIANIRKISGATIEISDARARG-DRIALISGTPEEKRA--A 426
Query: 112 ENALQ 116
EN +Q
Sbjct: 427 ENLIQ 431
>gi|395839827|ref|XP_003792777.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Otolemur garnettii]
Length = 554
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+ V I ++
Sbjct: 186 QARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHAT 245
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ D A ++ +++L G LIG
Sbjct: 246 PEGTS------EACRMILEIMQKEADETKLAEEIP--------LKILAHNGLVGRLIGKE 291
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + +G I I + L S + +R + + G V A NA +EI +LRE
Sbjct: 292 GRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACANAEIEIMKKLREAF 347
Query: 222 PRQVISISPAYNY-SAIRPAQPFVE-PTSADYVTFE---MLISESLVGGLIGRCGSNISR 276
+++++ Y S++ P F P Y E + I VG +IG+ G++I +
Sbjct: 348 ENDMLAVNTHSGYFSSLYPHHQFSPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQ 407
Query: 277 IRNESGAMIKVYGGKG 292
+ +GA IK+ +G
Sbjct: 408 LARFAGASIKIAPAEG 423
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIII 99
P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER++II
Sbjct: 374 PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVII 433
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+ A +I + +++ N + H+ + S AG +IG
Sbjct: 434 TGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIG 481
Query: 160 MSGQNIEKLRNSSGATIVI 178
G+ + +L+N + A +++
Sbjct: 482 KGGKTVNELQNLTSAEVIV 500
>gi|125555220|gb|EAZ00826.1| hypothetical protein OsI_22856 [Oryza sativa Indica Group]
Length = 693
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 150/335 (44%), Gaps = 70/335 (20%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FRI+ PS ++ ++G ++ ++E+ I++ D++ +ER+III+S++ D+
Sbjct: 338 DIIFRILCPSDKVNSLVGTRDGLLEMLQEDVGVDIRLTDSLDGSDERIIIITSREGPDHE 397
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL + I+ D + + T RLL+ S+ C G G ++
Sbjct: 398 LFPAQEALLHLQTHIV---DLGPDKDNII-------TTRLLVPSSEIACFEGRDG-SLSD 446
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI- 226
++ + A + IL LP CA ESD ++QI G++ A +ALV+I +LR R++
Sbjct: 447 IQRQTSANVQILPRQALPSCAL--ESDELIQIVGEIRAARDALVQITAKLRSYFYREIPG 504
Query: 227 -----------SISPA-------YNYSAI-RPAQPFVEPTSADY--------VTFE---- 255
SISPA Y S I P+ + A + ++FE
Sbjct: 505 PNQLGNITVHGSISPAKGSPRGPYQGSDIPMPSYQQAQHVPASWKDSGGGANMSFEQGSN 564
Query: 256 ------------------------MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
++I +S V L R GS +++I SGA + + +
Sbjct: 565 INDDMRQSAAKRFAVPLVTRSTLEVVIPKSAVASLTMRAGSKLAQISEMSGATVTLADER 624
Query: 292 GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQ 326
+ + ++ G+ +Q A+ + +I S +++
Sbjct: 625 PDAIEKVVRISGTPEQADKAQSLLQGFILSSKVKE 659
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
FRI+ P KV G I K+R++T A + I RVI S ++ D
Sbjct: 87 FRILCPQ---SKVYGFPPSFIAKVRDDTNAVVTIHLPYPGDAVRVIETSDGARREADGRP 143
Query: 107 -VVSDAENALQQIAALILK----DDDSNSEASKVA--AGHVAANTIRLLIAGSQAGCLIG 159
S A+ AL + IL+ D D + E A A T RL++ GCL+G
Sbjct: 144 PSFSPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLG 203
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL +Q P C S S+ VVQ+ G+ V A+ I ++L+
Sbjct: 204 KGGKIIEQMRAETKTHIRILPRDQHTPRCVSL--SEEVVQVVGEGNCVKKAVAIISDRLK 261
Query: 219 EN 220
E+
Sbjct: 262 ES 263
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 32 EDGEIEGSDPKRRAKAQD---VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+DG+ +G R A+D V R+IVP +G ++GK G I+++R ETK I+I
Sbjct: 166 DDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLGKGGKIIEQMRAETKTHIRILPR 225
Query: 89 IARHEERVIIIS 100
+H R + +S
Sbjct: 226 -DQHTPRCVSLS 236
>gi|395839829|ref|XP_003792778.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Otolemur garnettii]
Length = 575
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 129/277 (46%), Gaps = 46/277 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+ V I ++
Sbjct: 186 QARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHAT 245
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ D A ++ +++L G LIG
Sbjct: 246 PEGTS------EACRMILEIMQKEADETKLAEEIP--------LKILAHNGLVGRLIGKE 291
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + +G I I + L S + +R + + G V A NA +EI +LRE
Sbjct: 292 GRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACANAEIEIMKKLREAF 347
Query: 222 PRQVISIS------PAYNYSAI-----------RPAQPFVEPTSADYVTF---------E 255
+++++ P N SA+ P+ P P +A Y F
Sbjct: 348 ENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPSGPRGAPPAAPYHPFAQYPEQEIVN 407
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
+ I VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 408 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG 444
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVS 109
+ + +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 405 IVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF-- 462
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +I + +++ N + H+ + S AG +IG G+ + +L+
Sbjct: 463 ---KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQ 512
Query: 170 NSSGATIVI 178
N + A +++
Sbjct: 513 NLTSAEVIV 521
>gi|328720738|ref|XP_001949210.2| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 144/330 (43%), Gaps = 79/330 (23%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
++ RI+ R++G VIGK G ++ IR+++ A + I+D ER++ I+
Sbjct: 20 NLTIRILFHGREVGNVIGKGGETVKNIRDQSGARVLISDG--STPERIVTITG------- 70
Query: 109 SDAENALQQIAALI-LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
NA+ + LI LK ++ + G A T +L++ SQ G +IG G I++
Sbjct: 71 --TTNAICKATELIGLKVEEFFERQNGDWNGPKAPLTFKLIVPASQCGFIIGKGGCKIKE 128
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-------VPAVLNALVE-------- 212
+R SSGA I + A + LP + ++R+V I+G V V N L++
Sbjct: 129 IRESSGAAIQV-ASDMLP-----NSTERLVSITGTTGTISQCVYQVCNVLLDSPPRSATI 182
Query: 213 ---------------IGNQL---RENPPRQVISISPAY-NYSAIRPAQPFV--------- 244
+GN R NP + ++ + I PA
Sbjct: 183 PYDPRSKTSGFASSAVGNDFGRQRTNPLASLAALGLGTASTGGINPAALAALAGSQLRTG 242
Query: 245 -------------EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
+ ++++ T M + L+G +IGR GS I+ IR SGA++ + G+
Sbjct: 243 NRQNRNGSGEHKNQNSNSNTETISMTVPNDLIGCVIGRRGSKIAEIRQISGALVHIAKGE 302
Query: 292 -----GEQKHRHIQFGGSAQQVALAKQRVD 316
GE + RHI G+ +++AK ++
Sbjct: 303 GTHENGENEDRHITITGNKDSISVAKYLIE 332
>gi|54290950|dbj|BAD61631.1| putative HEN4 [Oryza sativa Japonica Group]
Length = 662
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FRI+ PS ++ ++G ++ ++E+ I++ D++ +ER+III+S++ D+
Sbjct: 338 DIIFRILCPSDKVNSLVGTRDGLLEMLQEDVGVDIRLTDSLDGSDERIIIITSREGPDHE 397
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL + I+ D + + T RLL+ S+ C G G ++
Sbjct: 398 LFPAQEALLHLQTHIV---DLGPDKDNII-------TTRLLVPSSEIACFEGRDG-SLSD 446
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ + A + IL LP CA ESD ++QI G++ A +ALV+I +LR
Sbjct: 447 IQRQTSANVQILPRQALPSCAL--ESDELIQIVGEIRAARDALVQITAKLR 495
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
FRI+ P KV G I K+R++T A + I RVI S ++ D
Sbjct: 87 FRILCPQ---SKVYGFPPSFIAKVRDDTNAVVTIHLPYPGDAVRVIETSDGARREADGRP 143
Query: 107 -VVSDAENALQQIAALILK----DDDSNSEASKVA--AGHVAANTIRLLIAGSQAGCLIG 159
S A+ AL + IL+ D D + E A A T RL++ GCL+G
Sbjct: 144 PSFSPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLG 203
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL +Q P C S S+ VVQ+ G+ V A+ I ++L+
Sbjct: 204 KGGKIIEQMRAETKTHIRILPRDQHTPRCVSL--SEEVVQVVGEGNCVKKAVAIISDRLK 261
Query: 219 EN 220
E+
Sbjct: 262 ES 263
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 32 EDGEIEGSDPKRRAKAQD---VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+DG+ +G R A+D V R+IVP +G ++GK G I+++R ETK I+I
Sbjct: 166 DDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLGKGGKIIEQMRAETKTHIRILPR 225
Query: 89 IARHEERVIIISSK 102
+H R + +S +
Sbjct: 226 -DQHTPRCVSLSEE 238
>gi|356526304|ref|XP_003531758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Glycine
max]
Length = 565
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 104/186 (55%), Gaps = 12/186 (6%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E G R ++V+F+++ ++G +IGK G ++ ++ ET A+I+I +A +E
Sbjct: 185 ESAGHSSHRMFVEEEVVFKLLCRHDKVGSLIGKGGSVVRALQNETGASIQIVEAGPDSDE 244
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
RV++IS+++ S+ +++ Q A + + + +++ AA +LL+ Q
Sbjct: 245 RVVVISAQE----TSEQKHSPAQEAVIRV-----HCRLTEIGFEPSAAVVAKLLVRSPQV 295
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
GCL+G G I ++R ++GA+I I + Q+ + +++ VVQ+ G + +V +AL I
Sbjct: 296 GCLLGKGGLVISEMRRATGASIRIFSKEQIKYIS---QNEEVVQVIGSLQSVQDALFHIT 352
Query: 215 NQLREN 220
N++RE
Sbjct: 353 NRIRET 358
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 122/264 (46%), Gaps = 54/264 (20%)
Query: 42 KRR---AKAQDVLFRIIVPSRQIGKV--IGKEGHRIQKIREETKATIKIADAIARHEERV 96
KRR A D +FRI+ P+ + V IG +G A I + D + EERV
Sbjct: 8 KRRHAPPAAPDAVFRIVCPAAKTADVAAIGGDG-----------AKILVEDLVGA-EERV 55
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
++I + S A+ AL ++ + ++ NS S +L+ Q GC
Sbjct: 56 VVIVGDE-----SAAQVALIRVLERTMDEETKNSTVS-----------CKLVAPSYQVGC 99
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
++G G+ +EK+R SGA I +L +Q D +QI+G+ AV A++ +
Sbjct: 100 VLGRGGKIVEKIRQDSGAHIRVLPKDQ----PPPPPGDEFIQITGNFGAVKKAVLSVSAC 155
Query: 217 LREN-----PPRQVISISP-------AYNYSAIRPAQ-PFVEPTSADYVTFEMLISESLV 263
L EN P S +P AY+ SA + FVE + V F++L V
Sbjct: 156 LHENNYGAFKPSGGGSYAPPDHHSRGAYSESAGHSSHRMFVE----EEVVFKLLCRHDKV 211
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ GS + ++NE+GA I++
Sbjct: 212 GSLIGKGGSVVRALQNETGASIQI 235
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 54/268 (20%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-----------------IADA 88
K V +++ PS Q+G V+G+ G ++KIR+++ A I+ I
Sbjct: 82 KNSTVSCKLVAPSYQVGCVLGRGGKIVEKIRQDSGAHIRVLPKDQPPPPPGDEFIQITGN 141
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE-ASKVAAGHVAAN---- 143
++ V+ +S+ ++N A + D +S A +AGH +
Sbjct: 142 FGAVKKAVLSVSACLHEN----NYGAFKPSGGGSYAPPDHHSRGAYSESAGHSSHRMFVE 197
Query: 144 ---TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+LL + G LIG G + L+N +GA+I I+ A +RVV IS
Sbjct: 198 EEVVFKLLCRHDKVGSLIGKGGSVVRALQNETGASIQIVE-------AGPDSDERVVVIS 250
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
E Q VI + R + EP++A V ++L+
Sbjct: 251 AQ---------ETSEQKHSPAQEAVIRVH-------CRLTEIGFEPSAA--VVAKLLVRS 292
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVY 288
VG L+G+ G IS +R +GA I+++
Sbjct: 293 PQVGCLLGKGGLVISEMRRATGASIRIF 320
>gi|297791069|ref|XP_002863419.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297309254|gb|EFH39678.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 643
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII--ISSK 102
+K++ ++ ++I S +IG+VIGK G I+ IR+ + + I++ D+ A H++ +I +++
Sbjct: 311 SKSEKLVIKVICSSSKIGRVIGKGGSTIKGIRQASGSHIEVNDSRANHDDDCVITVTATE 370
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D++ S A A+ L+L++ ++ + KV ++LL+ GC+IG SG
Sbjct: 371 SPDDLKSMAVEAV-----LLLQEKINDEDEEKVK--------MQLLVPSKVIGCIIGKSG 417
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I I N P CA + D +V+ISG+V V +AL++I +LR++
Sbjct: 418 SIISEIRKRTKANIHISKGNNKPKCADPN--DELVEISGEVSDVRDALIQIVLRLRDD 473
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 134/311 (43%), Gaps = 75/311 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV 107
V++RI+ PS +G VIGK G I IR+ET+A IK+ D ERVI I S + ++
Sbjct: 43 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVTEKKDI 102
Query: 108 V-------------SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
+ A++AL ++ I+ + +E +K+ + RLL+ SQ
Sbjct: 103 IDIEHSELNYSIPLCSAQDALLKVHDAIVASLATAAENTKIDRDDI--RECRLLVPSSQC 160
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEI 213
+IG SG I+K+R+ + A + +++ + P A + D +V ISG+ +V AL +
Sbjct: 161 SNVIGKSGSIIKKIRSRTRANVKVVSKDVSDPSHTCAMDFDNIVLISGESESVKKALFAV 220
Query: 214 GNQLRENPPRQVI-------------------SISP------------------------ 230
+ + PR+ I SI P
Sbjct: 221 SAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQGGLYPNQDPIFQHGANVSSFIGT 280
Query: 231 ---AYNYSAIRP-------AQPFVE----PTSADYVTFEMLISESLVGGLIGRCGSNISR 276
Y SA P A P V + ++ + +++ S S +G +IG+ GS I
Sbjct: 281 LPQGYGESAANPMPVFSASALPVVHGFGGSSKSEKLVIKVICSSSKIGRVIGKGGSTIKG 340
Query: 277 IRNESGAMIKV 287
IR SG+ I+V
Sbjct: 341 IRQASGSHIEV 351
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
T E+ I + VG ++GR G N+ IR SGAMI++ K R G+ +Q A
Sbjct: 573 TTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRIALISGTPEQKRTA 632
Query: 312 KQRVDEYIYS 321
+ +I S
Sbjct: 633 ENLFQAFIMS 642
>gi|195430448|ref|XP_002063267.1| GK21481 [Drosophila willistoni]
gi|194159352|gb|EDW74253.1| GK21481 [Drosophila willistoni]
Length = 505
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 30 RREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
+RE + + + ++R + + RI++PS G VIGK G IQK+R + KAT+ + D
Sbjct: 2 KRESSDGDAAQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD-- 59
Query: 90 ARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
++ ER I IS +D E+ L+ I ++ ++ + + +RLLI
Sbjct: 60 SQGPERTIQIS--------ADIESTLEIITEMLKYFEERDEDFD-----------VRLLI 100
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+ A
Sbjct: 101 HQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQSQVIEA 155
Query: 210 LVEIGNQLRENPPRQVISISPAYNYSAI 237
+ E+ R+ P + I N+ +
Sbjct: 156 VREVITLTRDTPIKGAIHNYDPMNFDRV 183
>gi|281366597|ref|NP_001163493.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|386771584|ref|NP_001246873.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
gi|134085557|gb|ABO52837.1| IP17311p [Drosophila melanogaster]
gi|272455272|gb|ACZ94764.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|383292063|gb|AFH04544.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
Length = 557
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
VS NA+ LI K + ++ KV + IRL++ SQ G L
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEFNDVGKVGKTQIP---IRLIVPASQCGSL 117
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG SG I+++R ++G +I + A LP + ++R V +SG + + +I +
Sbjct: 118 IGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVM 171
Query: 218 RENPPR 223
E+PPR
Sbjct: 172 LESPPR 177
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALA 311
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VALA
Sbjct: 289 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 348
Query: 312 KQRVD---EYIYSQLIQQAGAQ 330
+ ++ E + L++QA +Q
Sbjct: 349 QYLINMSVELQKANLLEQAQSQ 370
>gi|348503027|ref|XP_003439068.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 446
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 150/344 (43%), Gaps = 89/344 (25%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A + I++ ER+I I+ D+V
Sbjct: 16 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEG--SCPERIITITG-STDSVF- 71
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIE 166
A I + +D + VA G +++ T+RL+I SQ G LIG G I+
Sbjct: 72 ---RAFTMITYKLEED-----LTALVANGTISSKPPVTLRLVIPASQCGSLIGKGGAKIK 123
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN------------------ 208
++R S+GA I + A + LP + ++R V ISG+ +V+
Sbjct: 124 EIRESTGAQIQV-AGDLLP-----NSTERGVTISGNQDSVIQCVKLICTVILESPPKGAT 177
Query: 209 ----------ALVEIGNQL---RENPPRQVISISP-------AYNY-------------- 234
AL+ GNQ+ E P + S++ AY
Sbjct: 178 IPYRPSPSPAALLIAGNQVFEASEFAPHPLYSVAQGGLDLQQAYTLQNQYGIPHSELAKL 237
Query: 235 ---SAIRPAQPFVEPTSA--------DYVTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
S + P +P SA + E+LI L+G +IGR G+ I+ IR SGA
Sbjct: 238 HQLSVQQGLSPIAQPASAVIPGMDSNSQTSQELLIPNDLIGSIIGRQGTKINEIRQVSGA 297
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
IK+ RH+ G+ + LA +Y+ + ++ A
Sbjct: 298 QIKIGSQLDGTSDRHVTITGTPVSINLA-----QYLITSCLETA 336
>gi|344232044|gb|EGV63923.1| hypothetical protein CANTEDRAFT_104592 [Candida tenuis ATCC 10573]
Length = 408
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 131/306 (42%), Gaps = 60/306 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R+++ S++ G +IG+ G I IR+ET I+ +A +ER++ +S + +
Sbjct: 99 YRLLISSKESGCLIGQSGSVINSIRQETDTKAGISKLLAHTQERILTVS-----GTLDNC 153
Query: 112 ENALQQIAALILKDDDSNSEASKVA--------------------------AGHVAANTI 145
A+ + +++ ++A+ A AGH + +
Sbjct: 154 SKAISYFSQALIEAQQHEADAASTASAGPMPSSVEEYPHFPLRQLSIHKNIAGH--STVL 211
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLLI SQ G +IG G I++++ G ++ I + + LP ++R+V++ G VP
Sbjct: 212 RLLIPNSQMGTIIGAKGARIQRIQQVFGVSM-IASKSFLP-----GSNERLVELQGSVPE 265
Query: 206 VLNALVEIGNQLREN-------------PPRQVISISPAYNYSAIRPAQPFVEPTS---- 248
+ AL I L E+ P R + + SA PA P P S
Sbjct: 266 LYAALRVISRCLIEDFGGVVGTSYYVPRPRRPDVPVVAPLPVSA--PAAPGTGPASDSSS 323
Query: 249 --ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
A VT M S+ +VG LIG+ GS I +R SGA+I + R GS
Sbjct: 324 SPARLVTTSMAFSKDIVGALIGKSGSRIQGVRKISGAIIGISDELEGSSERIFTISGSTY 383
Query: 307 QVALAK 312
V AK
Sbjct: 384 AVDKAK 389
>gi|332215033|ref|XP_003256641.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 4 [Nomascus leucogenys]
gi|397470079|ref|XP_003806661.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Pan paniscus]
gi|179479950|gb|ACB86627.1| insulin-like 2 growth factor 2-binding protein 2 [Homo sapiens]
Length = 493
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 130/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 273
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A +EI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 274 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPF--PHHHSYPEQEIVNLFIPTQ 331
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 332 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 362
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 310 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 369
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 370 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 417
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 418 VIGKGGKTVNELQNLTSAEVIV 439
>gi|198430105|ref|XP_002128022.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K,
like [Ciona intestinalis]
Length = 323
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 31/221 (14%)
Query: 24 DVSGKRRREDGEIEGSD---PKRRAKAQD-VLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
D S KR ++ E EG D P +RA+ Q + R +VP++ G +IGK G I+ +R+
Sbjct: 29 DQSFKRPYDETE-EGGDEYSPSKRARHQTHIQMRCLVPAKCAGGIIGKGGTNIKDMRDTF 87
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGH 139
KA I I D+ +R ERV+ IS+ +++ ++L+ +EA+ G
Sbjct: 88 KAQINIPDSDSR--ERVLRISA------------SIESCGEILLRTLPVINEAALNGPGR 133
Query: 140 VAAN-----TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
+ +I+LL+ SQAG +IG+ G I++LR +GATI + Q C ++ +D
Sbjct: 134 FGRDPKDDMSIKLLVHQSQAGGIIGVKGFKIKELREKTGATIKV----QQDCCPNS--TD 187
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVI-SISPAYNY 234
RV ++G + + +V I L PP+ I + +P + +
Sbjct: 188 RVCMVAGSAEIISSCVVLILELLETIPPKGPIQNFNPGFGF 228
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 27/152 (17%)
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
A H +R L+ AG +IG G NI+ +R++ A I I + +RV
Sbjct: 52 ARHQTHIQMRCLVPAKCAGGIIGKGGTNIKDMRDTFKAQINI---------PDSDSRERV 102
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIR-PAQPFVEPTSADYVTFE 255
++IS A + + EI ++ P N +A+ P + +P D ++ +
Sbjct: 103 LRIS----ASIESCGEI-----------LLRTLPVINEAALNGPGRFGRDP--KDDMSIK 145
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+L+ +S GG+IG G I +R ++GA IKV
Sbjct: 146 LLVHQSQAGGIIGVKGFKIKELREKTGATIKV 177
>gi|297806983|ref|XP_002871375.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
gi|297317212|gb|EFH47634.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
Length = 525
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 25 VSGKRRREDGEIEG-----SDPKRRAK--AQDVLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
VS + RE +E S P++ ++ Q V+ +I+ +IG+VIG I+ ++
Sbjct: 243 VSRLKHRELDPLESLHRNLSQPRKDSEDNKQQVVLKILCSKERIGRVIGNGRATIRDLQS 302
Query: 78 ETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIA-ALILKDDDSNSEASKVA 136
ET A I + +E + I++ ++ N A+N+ Q A L+ N+ A +
Sbjct: 303 ETGAFITLGSNRLDCDEGLFTITASEDPN----AKNSPSQRALVLVFSKMYENTTAKVLD 358
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
+G ++ T RL++ +Q CL+G G ++ +GA I +L Q P C S E++++
Sbjct: 359 SGLTSSITARLVVRSNQINCLMGEEGHIKSTIQQRTGAFITVLNVEQNPKCVS--ENNQI 416
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY--NY--SAIRPAQPF---VEPTS 248
VQISG P V A+ ++ + LRE+ Q + + NY IRP F PT+
Sbjct: 417 VQISGAFPNVKEAINQVTSMLREDLINQSFQMGSHFPVNYFNPCIRPEDSFPNWFSPTT 475
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 17/192 (8%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII- 99
P++ VLFRI+ Q+G VIGK+G I++++E T + I + A RVI I
Sbjct: 15 PRQSPPEGYVLFRILGHVSQVGDVIGKDGRVIRQLKESTNSQIWVEKAPLDSLYRVITII 74
Query: 100 -----SSKDNDNVVSDAENALQQIAALILKDDDSNS--------EASKVAAGHVAANTIR 146
+S+ V+ + + ++ + + S + EA V G + + R
Sbjct: 75 ADVGSTSRVKLGVIVNNASNRKKEEVQEQEVEVSRAQGALIRVFEALNVRFGTSSTVSSR 134
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LL+ +IG G+ +E +R +G + I N LP CA D +V+I G+V AV
Sbjct: 135 LLMEACHVVTVIGKGGELMEMIRKETGCNVEICQYN-LPSCADP--DDVMVKIEGNVFAV 191
Query: 207 LNALVEIGNQLR 218
LV I ++L+
Sbjct: 192 KKVLVSISSRLQ 203
>gi|386771588|ref|NP_001246874.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
gi|383292064|gb|AFH04545.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
Length = 539
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
VS NA+ LI K + ++ KV + IRL++ SQ G L
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEFNDVGKVGKTQIP---IRLIVPASQCGSL 117
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG SG I+++R ++G +I + A LP + ++R V +SG + + +I +
Sbjct: 118 IGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVM 171
Query: 218 RENPPR 223
E+PPR
Sbjct: 172 LESPPR 177
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALA 311
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VALA
Sbjct: 271 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 330
Query: 312 KQRVD---EYIYSQLIQQAGAQ 330
+ ++ E + L++QA +Q
Sbjct: 331 QYLINMSVELQKANLLEQAQSQ 352
>gi|413953982|gb|AFW86631.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 581
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FRI+ P+ ++ ++ ++ ++ + ++++D IA +ERV+II+S++ D+
Sbjct: 341 DIIFRILCPNDKVDNLVATNDGILEMLQADVGVDVRLSDIIAGSDERVVIITSREGPDHE 400
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ A+ I I+ D + + T RLL+ S+ C G G ++
Sbjct: 401 LFPAQEAVLHIQTHIV---DLGPDKDNII-------TTRLLVPSSEIACFDGREG-SLSD 449
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ + A + IL LPLCA ESD ++QI G++ A NAL+++ +LR
Sbjct: 450 IQRQTSANVQILPKEDLPLCAL--ESDELIQIVGEISAARNALIQVTTKLR 498
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---SSKDNDN-- 106
FRI+ P K G + K+R+++ A + + A RVI + ++ D
Sbjct: 91 FRILCPE---CKAYGFPPGFVAKVRDDSGALVTVHPPFAGDYVRVIETVDGARREADGRP 147
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAGH------VAANTIRLLIAGSQAGCLIG 159
+ S A+ AL + IL+ D + + T RL++ GCL+G
Sbjct: 148 PMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKDSRDRGKTTTRLIVPKMHVGCLLG 207
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL +Q P C S S+ VVQ+ GD V A+ I ++L+
Sbjct: 208 KGGKIIEQMRMETKTHIRILPRDQHTPRCVSL--SEEVVQVVGDGNCVKKAVAIITDRLK 265
Query: 219 EN 220
E+
Sbjct: 266 ES 267
>gi|226470354|emb|CAX70457.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 370
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 25/181 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
RR + V R ++ ++ G +IGK G I+KIREE + I D + ERV+++
Sbjct: 2 RRGEGPKVELRFLISTKAAGVIIGKGGENIKKIREEYSVKVTIPD--SNGPERVLVLDG- 58
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D +++ L+++ N+ V +RLL+ SQAGC+IG G
Sbjct: 59 DLGSIIEIFRENLEKM---------QNNRDEGV--------DLRLLVHYSQAGCVIGRGG 101
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++LR SG + L Q+ LC S+ +DRV+Q+ GDV VLN L I L PP
Sbjct: 102 YKIKELREQSG--LHTLKVYQM-LCPSS--TDRVIQLVGDVGKVLNCLQSIAELLEGAPP 156
Query: 223 R 223
+
Sbjct: 157 K 157
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 37/145 (25%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R LI+ AG +IG G+NI+K+R + I ++ +RV+ + GD
Sbjct: 11 LRFLISTKAAGVIIGKGGENIKKIREEYSVKVTI---------PDSNGPERVLVLDGD-- 59
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
L +++EI REN + ++ + V +L+ S G
Sbjct: 60 --LGSIIEI---FRENLEK--------------------MQNNRDEGVDLRLLVHYSQAG 94
Query: 265 GLIGRCGSNISRIRNESGA-MIKVY 288
+IGR G I +R +SG +KVY
Sbjct: 95 CVIGRGGYKIKELREQSGLHTLKVY 119
>gi|427784321|gb|JAA57612.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Rhipicephalus
pulchellus]
Length = 334
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 24 DVSGKRRRE---DGEIEGSDPKRRAK----AQDVLFRIIVPSRQIGKVIGKEGHRIQKIR 76
D SG +RE DG +G P +R + + V R ++ SR G +IGK G I +R
Sbjct: 5 DGSGSNKRESTDDGRADGEAPSKRPRNTGGGRAVDVRFLLQSRNAGAIIGKGGSNINSLR 64
Query: 77 EETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK-DDDSNSEASKV 135
+E KA+I + D ER++ ++V+D + + + +I K DD S A
Sbjct: 65 KEFKASISVPDCPG--PERIL--------SIVADLDTLGEILLNIIPKLDDRSMQFAQHT 114
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+ + +RLL+ S AGC+IG +G I++LR S+GA I + C + E R
Sbjct: 115 GQNGGSESEMRLLMHQSHAGCIIGRAGCRIKELRESTGANIKVHG----SCCPGSTE--R 168
Query: 196 VVQISGDVPAVLNALVEI 213
+V+++G V++ + +I
Sbjct: 169 IVKVTGSPSVVVDCIKQI 186
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
D ++ S+ + G A + +R L+ AG +IG G NI LR A+I +
Sbjct: 21 DGEAPSKRPRNTGGGRAVD-VRFLLQSRNAGAIIGKGGSNINSLRKEFKASISV------ 73
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFV 244
P C +R++ I D L+ L EI +++I P + +++ AQ
Sbjct: 74 PDCPGP---ERILSIVAD----LDTLGEI-----------LLNIIPKLDDRSMQFAQ-HT 114
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+L+ +S G +IGR G I +R +GA IKV+G
Sbjct: 115 GQNGGSESEMRLLMHQSHAGCIIGRAGCRIKELRESTGANIKVHG 159
>gi|363747261|ref|XP_003643959.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Gallus
gallus]
Length = 348
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 143/347 (41%), Gaps = 94/347 (27%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVI---LAPNQ---------LP---------LCASAHES------------ 193
++R S+GA + + + PN +P +C ES
Sbjct: 122 EIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPK 181
Query: 194 ------------DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY--------- 232
DR S P ++ N E PP++ +I Y
Sbjct: 182 PSSSPVIFAGGQDRYSSGSASYPHTAPSMCL--NSDLEGPPQEAYTIQGQYAIPQPDLTK 239
Query: 233 ------------------NYSAIRPAQPFVE-----PTSADYVTFEMLISESLVGGLIGR 269
+S I + P V+ SA + E+ I L+G +IGR
Sbjct: 240 LHQLAMQQSHFPMSHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGR 299
Query: 270 CGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
G+ I+ IR SGA IK+ R + GSA ++LA+ ++
Sbjct: 300 QGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 346
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 262 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 321
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 322 EGSTDRQVTIT 332
>gi|413953981|gb|AFW86630.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 667
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D++FRI+ P+ ++ ++ ++ ++ + ++++D IA +ERV+II+S++ D+
Sbjct: 341 DIIFRILCPNDKVDNLVATNDGILEMLQADVGVDVRLSDIIAGSDERVVIITSREGPDHE 400
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ A+ I I+ D + + T RLL+ S+ C G G ++
Sbjct: 401 LFPAQEAVLHIQTHIV---DLGPDKDNII-------TTRLLVPSSEIACFDGREG-SLSD 449
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ + A + IL LPLCA ESD ++QI G++ A NAL+++ +LR
Sbjct: 450 IQRQTSANVQILPKEDLPLCAL--ESDELIQIVGEISAARNALIQVTTKLR 498
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---SSKDNDN-- 106
FRI+ P K G + K+R+++ A + + A RVI + ++ D
Sbjct: 91 FRILCPE---CKAYGFPPGFVAKVRDDSGALVTVHPPFAGDYVRVIETVDGARREADGRP 147
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAGH------VAANTIRLLIAGSQAGCLIG 159
+ S A+ AL + IL+ D + + T RL++ GCL+G
Sbjct: 148 PMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKDSRDRGKTTTRLIVPKMHVGCLLG 207
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL +Q P C S S+ VVQ+ GD V A+ I ++L+
Sbjct: 208 KGGKIIEQMRMETKTHIRILPRDQHTPRCVSL--SEEVVQVVGDGNCVKKAVAIITDRLK 265
Query: 219 EN 220
E+
Sbjct: 266 ES 267
>gi|449524744|ref|XP_004169381.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 224
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 89/149 (59%), Gaps = 11/149 (7%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SD K D +FR+IVP ++G +IG++G I+K+ EET+A I++ D +RV++
Sbjct: 70 SDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVL 129
Query: 99 ISSKDN-DNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
IS K+ ++ +S A +A+ ++ + L +++ ++AS +IRLL+A +QA
Sbjct: 130 ISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFC--------SIRLLVASTQAI 181
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQL 184
LIG G I+ ++ S+GA++ +L+ L
Sbjct: 182 NLIGKQGSLIKSIQESTGASVRVLSGGML 210
>gi|56118219|ref|NP_001007226.1| insulin-like growth factor 2 mRNA-binding protein 2 isoform b [Homo
sapiens]
gi|4883681|gb|AAD31596.1|AF057352_1 hepatocellular carcinoma autoantigen [Homo sapiens]
gi|119598615|gb|EAW78209.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_a
[Homo sapiens]
gi|410223072|gb|JAA08755.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410251294|gb|JAA13614.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410302888|gb|JAA30044.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410342485|gb|JAA40189.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
Length = 556
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 130/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A +EI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPF--PHHHSYPEQEIVNLFIPTQ 394
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 395 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 425
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|109042331|ref|XP_001095005.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Macaca mulatta]
gi|402860701|ref|XP_003894761.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Papio anubis]
Length = 556
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 130/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A +EI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPF--PHHHSYPEQEVVNLFIPTQ 394
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 395 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 425
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|356509231|ref|XP_003523354.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 644
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 101/176 (57%), Gaps = 22/176 (12%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
++++FRI+ P ++ ++IG+ ++ ++ E +K+ D + +E++III+S++ D+
Sbjct: 322 EELVFRILCPIEKVDRIIGESEGIVEFLQNEVGVDVKVTDPVGGSDEQIIIITSEEGPDD 381
Query: 107 VVSDAENAL----QQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+ A+ AL +I L+L D++ T RL++ S+ CL G
Sbjct: 382 ELFPAQEALLHVQTRIVDLVLDKDNT--------------ITTRLVVPSSEIECLDG-KD 426
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ ++R +GA I IL ++LPLC + ++D +VQI G++ A +A+VE+ ++LR
Sbjct: 427 VSLSEIRRLTGANIQILPRDELPLCVA--KTDELVQIVGEIKAARDAVVEVTSRLR 480
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 114/247 (46%), Gaps = 22/247 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN----- 106
+RI+ + G VIGK G I+ IR+ T A I + + + EER+I IS +
Sbjct: 63 YRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRM 122
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGCLIGM 160
S A+ AL I IL+ D + A + RL+++ GCL+G
Sbjct: 123 PSFSPAQEALLLIHERILESDAAFGVAEEDEEYGGRGGGRDRIATRLVVSRMHVGCLLGK 182
Query: 161 SGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G+ IE++R + I IL + LP C S S+ +VQ+ G+V AV NALV I ++LRE
Sbjct: 183 GGKIIEQMRMETKTQIRILPRDHNLPRCVSM--SEEIVQVVGNVNAVKNALVIISSRLRE 240
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE--SLVGGLIGRCGSNISRI 277
+ R ++ + + + F P DYV S S+ G G GSN +
Sbjct: 241 SQHRDR-----SHFHGRVHSPERFFSPDD-DYVPHVTSGSRRSSVDGASFGSRGSNTNSR 294
Query: 278 RNESGAM 284
N ++
Sbjct: 295 NNNHPSL 301
>gi|197101075|ref|NP_001125573.1| insulin-like growth factor 2 mRNA-binding protein 2 [Pongo abelii]
gi|75041981|sp|Q5RB68.1|IF2B2_PONAB RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2;
Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName:
Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ
family member 2
gi|55728499|emb|CAH90992.1| hypothetical protein [Pongo abelii]
Length = 556
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 130/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A +EI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPF--PHHHSYPEQEIVNLFIPTQ 394
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 395 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 425
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|392573629|gb|EIW66768.1| hypothetical protein TREMEDRAFT_65168 [Tremella mesenterica DSM
1558]
Length = 350
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 141/338 (41%), Gaps = 72/338 (21%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P + + R +V +++ G +IGK G I IR +T ++ + ++RV
Sbjct: 14 SSPNGHSDEPQLSLRALVSTKEAGILIGKGGQTIADIRAKTNVKAGVSKVVPGVQDRVFS 73
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+S V A ++A L+L+ S+S G A ++RLLI+ + G +I
Sbjct: 74 VS-----GAVDHVAAAFAEVARLLLETPLSDSSLPPPPVG--AFTSVRLLISHNLMGTVI 126
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G SG I+++++ SGA +V + LP ++RVV+I G V A+ A++EIG L
Sbjct: 127 GRSGAKIKQIQDESGARMVA-SKEMLP-----QSTERVVEIQGSVEAIKTAVLEIGKCLM 180
Query: 219 ENPPR------------------------QVI----------SISPAYNYSAIR------ 238
E+ R Q + S++P++ + R
Sbjct: 181 EDWERNTGTVLYHPGAAGDAGVLAGGLGAQTVTGGLGGIRRSSVAPSFGFGGERRMSGRP 240
Query: 239 ------------PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
A P V + T + I +VG +IGR G+ I+ IR SG+ I
Sbjct: 241 SISAPSETRRVSDAPPMV--NDPNLRTQNISIPSDMVGCIIGRGGTKITEIRRLSGSRIS 298
Query: 287 VYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
+ E R G+A A +R +YSQL
Sbjct: 299 IAKAPHDETGERMFTIVGTAD----ATERALMLLYSQL 332
>gi|332215031|ref|XP_003256640.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Nomascus leucogenys]
Length = 556
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 33/288 (11%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPT 247
+R + + G V A +A +EI +LRE +++++ Y S++ P PF P
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPF--PH 377
Query: 248 SADYVTFE---MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
Y E + I VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 378 HHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG 425
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|74215286|dbj|BAE41861.1| unnamed protein product [Mus musculus]
Length = 530
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 139/327 (42%), Gaps = 75/327 (22%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 98 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 150
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 151 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 204
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 205 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 252
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI---------- 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 253 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVL 312
Query: 238 -RPAQPFVEPTSADYVTF-------------------------------EMLISESLVGG 265
PA P P S Y F + I VG
Sbjct: 313 PPPAGPRGVPPSPPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGA 372
Query: 266 LIGRCGSNISRIRNESGAMIKVYGGKG 292
+IG+ G++I ++ +GA IK+ +G
Sbjct: 373 IIGKKGAHIKQLARFAGASIKIAPAEG 399
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 363 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 417
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 418 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 470
Query: 173 GATIVI 178
A +++
Sbjct: 471 SAEVIV 476
>gi|321455064|gb|EFX66209.1| hypothetical protein DAPPUDRAFT_332423 [Daphnia pulex]
Length = 384
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 24/211 (11%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G +R DGE G KR D R++V S+ G +IGK G I K+R E ATI +
Sbjct: 11 GMKRNSDGET-GPAAKRLRPMGDTELRLLVYSKVAGSIIGKGGSNISKLRTENHATILLP 69
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA---GHVAAN 143
D ER++ I + D V++ +N L + E SK+ G V +
Sbjct: 70 DCPG--PERILTIQG-NLDAVINVLQNVLPSL-----------EEVSKIRGERTGRVGDS 115
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
RLL+ SQ GC+IG G +++LR S+G I + + +C +DR+VQI G
Sbjct: 116 DARLLVHQSQIGCIIGRGGAKVKELRESTGTRITVYS-----VCC-PRSTDRIVQILGKP 169
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+ +I ++E+ + I YNY
Sbjct: 170 SDCGECIKQIIALVKESQVKGPIDQYNPYNY 200
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 116/300 (38%), Gaps = 45/300 (15%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA-RHEERVIIIS 100
+R + D R++V QIG +IG+ G +++++RE T I + R +R++ I
Sbjct: 107 ERTGRVGDSDARLLVHQSQIGCIIGRGGAKVKELRESTGTRITVYSVCCPRSTDRIVQIL 166
Query: 101 SKDNDNVVSDAENALQQIAALILKD--------------DDSNSEASKVAAGHVAANTIR 146
K SD ++QI AL+ + D+S ++ +
Sbjct: 167 GKP-----SDCGECIKQIIALVKESQVKGPIDQYNPYNYDESFAQEYGGYGEGGVLVGMG 221
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
G G G R T+V P PL H R D+P
Sbjct: 222 AGGGGGGMRNPGGPRGPE----RELKIPTLVRDVPR--PLSPPRHRGYRAGSYERDLPP- 274
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGL 266
+L+ +G +R P Y+ I F E T ++ I + L G +
Sbjct: 275 -PSLMGVGQPVRGGP-------GGMYHDERI-----FREDDRGHTETTQVSIPKDLAGAI 321
Query: 267 IGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQ 326
IG+ G+ I +IR +SGA I + + R I GS+ Q+ A +Y+ Q +++
Sbjct: 322 IGKGGARIRKIRGDSGASITIDEPRPGSTERIITISGSSHQIWKA-----QYLLQQSVRE 376
>gi|241025456|ref|XP_002406183.1| poly(rc) binding protein, putative [Ixodes scapularis]
gi|215491885|gb|EEC01526.1| poly(rc) binding protein, putative [Ixodes scapularis]
Length = 398
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 132/304 (43%), Gaps = 67/304 (22%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G I+K REE+ A I I+D ER++ V+ + A+ +
Sbjct: 2 QEVGSIIGKKGDNIKKFREESGAKINISDGSC--PERIV---------TVTGSTEAILKA 50
Query: 119 AALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
+LI + + S +S H+ T+RL++ SQ G LIG G I+++R + +
Sbjct: 51 FSLIARKFEEVSTSSHSNGSHLPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREARAS-- 108
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR------------- 223
+ +A LP + ++R V +SG A+ + +I + E+PP+
Sbjct: 109 IQVASEMLP-----NSTERAVTVSGTADAITKCIYQICCVMMESPPKGATIPYRPKPAMP 163
Query: 224 -------------------------------QVISISPAYNYSAIRPAQPFVEPTSADYV 252
Q + P ++ AI P +A
Sbjct: 164 PVIFAGGQAYTVQGQYAIPHPDLTKLHQLALQHAPLLPGHSVGAINPQA---AIATASTT 220
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T EM I L+G +IG+ GS I+ IR SGA IK+ + K R + G+ + + LA+
Sbjct: 221 TTEMTIPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEEGSKDRTVTISGTPEAINLAQ 280
Query: 313 QRVD 316
++
Sbjct: 281 YLIN 284
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R+IVP+ Q G +IGK G +I++IR E +A+I++A + + ER + +S
Sbjct: 77 VTLRLIVPASQCGSLIGKGGSKIKEIR-EARASIQVASEMLPNSTERAVTVS 127
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS-SKDNDNVVSDAENA 114
+P+ IG +IGK G +I +IR+ + ATIKI+++ ++R + IS + + N+ N
Sbjct: 226 IPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEEGSKDRTVTISGTPEAINLAQYLINT 285
Query: 115 LQQIAALILKDDDSNSEAS 133
++ + D SN AS
Sbjct: 286 SMELHKNLTLDLTSNHPAS 304
>gi|242024312|ref|XP_002432572.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
gi|212518032|gb|EEB19834.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
Length = 365
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 32/207 (15%)
Query: 29 RRREDGEIEGSDPKRRAKAQD-VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
+R DG +G P++R K D R+++PS+ G +IGK GH I K+R E A++ + D
Sbjct: 2 KREIDGP-QGGGPQKRYKNSDGNEIRLLIPSKVAGSIIGKGGHNISKLRTEHNASVTVPD 60
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
ER++ V +D + L+ ++ ++ +D IR+
Sbjct: 61 CPG--PERIL--------TVAADLDTMLRVVSEILPNLED--------------VIDIRM 96
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
L+ SQAGC+IG G I++LR +GA I I + N P +DR+VQI+G +
Sbjct: 97 LVHQSQAGCIIGKGGLKIKELREKTGARIKIYS-NCCP-----QSTDRIVQINGKGNLCV 150
Query: 208 NALVEIGNQLRENPPRQVISISPAYNY 234
+A+ E L+ +P + + + +N+
Sbjct: 151 DAIRECMELLKTSPIKGMNNPYDPHNF 177
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 41/185 (22%)
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
N IRLLI AG +IG G NI KLR A++ + P C +R++ ++
Sbjct: 22 GNEIRLLIPSKVAGSIIGKGGHNISKLRTEHNASVTV------PDCPGP---ERILTVAA 72
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISES 261
D+ +L + EI P D + ML+ +S
Sbjct: 73 DLDTMLRVVSEI-------------------------------LPNLEDVIDIRMLVHQS 101
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAKQRVDEYIY 320
G +IG+ G I +R ++GA IK+Y Q R +Q G A + E +
Sbjct: 102 QAGCIIGKGGLKIKELREKTGARIKIYSNCCPQSTDRIVQINGKGNLCVDAIRECMELLK 161
Query: 321 SQLIQ 325
+ I+
Sbjct: 162 TSPIK 166
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI+KIR E+ A I I + + +R+I IS N + A+
Sbjct: 294 QVTIPKDLAGAIIGKGGSRIRKIRMESGAAITIDEPLPGSNDRIITISGTPNQ--IQMAQ 351
Query: 113 NALQQ 117
LQQ
Sbjct: 352 YLLQQ 356
>gi|224118310|ref|XP_002317787.1| predicted protein [Populus trichocarpa]
gi|222858460|gb|EEE96007.1| predicted protein [Populus trichocarpa]
Length = 655
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
+RI+ + G VIGK G I+ IR+ T A I + + I EER+I IS +D +
Sbjct: 62 YRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRM 121
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI---------RLLIAGSQAGC 156
S A+ AL I IL++D S G + RL+++ GC
Sbjct: 122 PSFSPAQEALFLIHDRILENDLQYGVVSSGVGGLEEDEYVGRGGNRVATRLVVSRMHVGC 181
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQ+ GDV AV NA+ I +
Sbjct: 182 LLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSM--SEEIVQVVGDVSAVKNAVAIISS 239
Query: 216 QLREN 220
+LRE+
Sbjct: 240 RLRES 244
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 24/177 (13%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
+D++FRI+ P ++ +V+G+ + ++ E +K+AD ++ +E++I I S++ D+
Sbjct: 324 EDLVFRILCPIDKLNRVVGESDGIVDLLQNEIGVDVKVADPVSGSDEQIITIFSEEGPDD 383
Query: 107 VVSDAENALQQIAALILK---DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG--MS 161
+ A+ AL I I+ D+D H+ T RLL+ S+ GCL G S
Sbjct: 384 ELFPAQEALLHIQTRIVDLVPDND-----------HI--TTTRLLVRSSEIGCLEGRDAS 430
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
IE+L +GATI IL +LP S D +VQI G++ A +ALVE+ ++LR
Sbjct: 431 LSEIERL---TGATIEILPKEKLPSYLSG--IDEIVQIEGEIRAARDALVEVTSRLR 482
>gi|363747263|ref|XP_003643960.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Gallus
gallus]
Length = 349
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 143/348 (41%), Gaps = 95/348 (27%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVI---LAPNQ---------LP---------LCASAHES------------ 193
++R S+GA + + + PN +P +C ES
Sbjct: 122 EIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPK 181
Query: 194 ------------DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY--------- 232
DR S P ++ N E PP++ +I Y
Sbjct: 182 PSSSPVIFAGGQDRYSSGSASYPHTAPSMCL--NSDLEGPPQEAYTIQGQYAIPQPDLTK 239
Query: 233 ------------------NYSAIRPAQPFVE------PTSADYVTFEMLISESLVGGLIG 268
+S I + P V+ SA + E+ I L+G +IG
Sbjct: 240 LHQLAMQQSHFPMSHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIG 299
Query: 269 RCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
R G+ I+ IR SGA IK+ R + GSA ++LA+ ++
Sbjct: 300 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 347
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 268 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 327
Query: 95 RVIIIS 100
R + I+
Sbjct: 328 RQVTIT 333
>gi|363737066|ref|XP_003641794.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Gallus gallus]
Length = 564
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 137/320 (42%), Gaps = 58/320 (18%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRRREDGEIEG--SDPKRRAKAQDVLFRIIVPSRQIG 62
+++ P V + P P R G RE G G S PK+ D R++VP++ +G
Sbjct: 138 KVSYIPDEEVSSPPPPQRSRRGGHASREQGSSPGGSSQPKQL----DFPLRMLVPTQFVG 193
Query: 63 KVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAA 120
+IGKEG I+ + ++T++ + I + E+ + I ++ + A + I
Sbjct: 194 AIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG------CSEACRMILD 247
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
++ K+ D A ++ +++L S G LIG G+N++K+ +G I I
Sbjct: 248 IMQKEADETKSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISP 299
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNY 234
L + + +R + + G A NA VEI +LRE +++++ P N
Sbjct: 300 LQDL----TIYNPERTITVKGSTEACSNAEVEIMKKLREAYENDIVAVNQQANLIPGLNL 355
Query: 235 SAI----------------------RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGS 272
SA+ P PF P + + I VG +IG+ G
Sbjct: 356 SALGIFSTGLSMLPSSAGARGAAAAAPYHPFALP---EQEVVNLFIPTQAVGAIIGKKGQ 412
Query: 273 NISRIRNESGAMIKVYGGKG 292
+I ++ +GA IK+ +G
Sbjct: 413 HIKQLARFAGASIKIAPAEG 432
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 396 LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQF----- 450
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + AG +IG G+ + +L+N +
Sbjct: 451 KAQGRIFGKLKEENFFNPKEEVKLEAHIKVPSF-------AAGRVIGKGGKTVNELQNLT 503
Query: 173 GATIVI 178
A +++
Sbjct: 504 SAEVIV 509
>gi|148665205|gb|EDK97621.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_b
[Mus musculus]
Length = 564
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 139/327 (42%), Gaps = 75/327 (22%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 178 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 230
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 231 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 284
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 285 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 332
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI---------- 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 333 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVL 392
Query: 238 -RPAQPFVEPTSADYVTF-------------------------------EMLISESLVGG 265
PA P P S Y F + I VG
Sbjct: 393 PPPAGPRGVPPSPPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGA 452
Query: 266 LIGRCGSNISRIRNESGAMIKVYGGKG 292
+IG+ G++I ++ +GA IK+ +G
Sbjct: 453 IIGKKGAHIKQLARFAGASIKIAPAEG 479
>gi|326925691|ref|XP_003209044.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Meleagris gallopavo]
Length = 502
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 57/314 (18%)
Query: 11 PTVSVVTEPEP-RHDVSGKRRREDGEIEG-SDPKRRAKAQDVLFRIIVPSRQIGKVIGKE 68
P V + P P R G RE G G S PK+ D R++VP++ +G +IGKE
Sbjct: 82 PDEEVSSPPPPQRSRRGGHASREQGSSPGGSQPKQL----DFPLRMLVPTQFVGAIIGKE 137
Query: 69 GHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126
G I+ + ++T++ + I + E+ + I ++ + A + I ++ K+
Sbjct: 138 GLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG------CSEACRMILDIMQKEA 191
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
D A ++ +++L S G LIG G+N++K+ +G I I L
Sbjct: 192 DETKSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDL-- 241
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI--- 237
+ + +R + + G A NA VEI +LRE +++++ P N SA+
Sbjct: 242 --TIYNPERTITVKGSTEACSNAEVEIMKKLREAYENDIVAVNQQANLIPGLNLSALGIF 299
Query: 238 -------------------RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
P PF P + + I VG +IG+ G +I ++
Sbjct: 300 STGLSMLPSSVGARGAAAAAPYHPFALP---EQEVVNLFIPTQAVGAIIGKKGQHIKQLA 356
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 357 RFAGASIKIAPAEG 370
>gi|148665204|gb|EDK97620.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_a
[Mus musculus]
Length = 596
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 139/327 (42%), Gaps = 75/327 (22%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 164 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 216
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 217 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 270
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 271 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 318
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI---------- 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 319 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVL 378
Query: 238 -RPAQPFVEPTSADYVTF-------------------------------EMLISESLVGG 265
PA P P S Y F + I VG
Sbjct: 379 PPPAGPRGVPPSPPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGA 438
Query: 266 LIGRCGSNISRIRNESGAMIKVYGGKG 292
+IG+ G++I ++ +GA IK+ +G
Sbjct: 439 IIGKKGAHIKQLARFAGASIKIAPAEG 465
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 429 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 483
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 484 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 536
Query: 173 GATIVI 178
A +++
Sbjct: 537 SAEVIV 542
>gi|148665206|gb|EDK97622.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_c
[Mus musculus]
Length = 543
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 139/327 (42%), Gaps = 75/327 (22%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 111 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 163
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 164 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 217
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 218 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 265
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI---------- 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 266 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVL 325
Query: 238 -RPAQPFVEPTSADYVTF-------------------------------EMLISESLVGG 265
PA P P S Y F + I VG
Sbjct: 326 PPPAGPRGVPPSPPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGA 385
Query: 266 LIGRCGSNISRIRNESGAMIKVYGGKG 292
+IG+ G++I ++ +GA IK+ +G
Sbjct: 386 IIGKKGAHIKQLARFAGASIKIAPAEG 412
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 376 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 430
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 431 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 483
Query: 173 GATIVI 178
A +++
Sbjct: 484 SAEVIV 489
>gi|116007842|ref|NP_001036619.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
gi|113194920|gb|ABI31266.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
Length = 539
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 158/357 (44%), Gaps = 80/357 (22%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVI---LAPNQ----LPLCASAHESDRVV------------ 197
LIG SG I+++R ++G +I + + PN + L SA + + +
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAEQITQCIYQICLVMLESPP 180
Query: 198 -----------QISGDVPAVL---NALVEIGN------QLRENPPRQVIS-----ISPA- 231
Q++G P +L A GN ++ +NP + + ++PA
Sbjct: 181 RGATIPYRPKPQVTG--PVILANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPAS 238
Query: 232 ---YNYSA---------IRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRN 279
N++A +R A P A EM +S L+G +IG+ G+ I+ IR
Sbjct: 239 TGGINHTAALAALAGSQLRTANP---ANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQ 295
Query: 280 ESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALAKQRVD---EYIYSQLIQQAGAQ 330
SGAMI++ +G R I G+ VALA+ ++ E + L++QA +Q
Sbjct: 296 ISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSVELQKANLLEQAQSQ 352
>gi|148665207|gb|EDK97623.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_d
[Mus musculus]
Length = 603
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 139/327 (42%), Gaps = 75/327 (22%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 171 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 223
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 224 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 277
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 278 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 325
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI---------- 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 326 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVL 385
Query: 238 -RPAQPFVEPTSADYVTF-------------------------------EMLISESLVGG 265
PA P P S Y F + I VG
Sbjct: 386 PPPAGPRGVPPSPPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGA 445
Query: 266 LIGRCGSNISRIRNESGAMIKVYGGKG 292
+IG+ G++I ++ +GA IK+ +G
Sbjct: 446 IIGKKGAHIKQLARFAGASIKIAPAEG 472
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 436 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 490
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 491 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 543
Query: 173 GATIVI 178
A +++
Sbjct: 544 SAEVIV 549
>gi|145207996|ref|NP_898850.2| insulin-like growth factor 2 mRNA-binding protein 2 [Mus musculus]
gi|81889459|sp|Q5SF07.1|IF2B2_MOUSE RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2;
Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName:
Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ
family member 2
gi|46577878|gb|AAT01428.1| insulin-like growth factor 2 mRNA-binding protein 2 [Mus musculus]
Length = 592
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 139/327 (42%), Gaps = 75/327 (22%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V+ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 160 VSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 212
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 213 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 266
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 267 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 314
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI---------- 237
+R + + G + A NA +EI +LRE +++++ P N SA+
Sbjct: 315 ERTITVRGTIEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVL 374
Query: 238 -RPAQPFVEPTSADYVTF-------------------------------EMLISESLVGG 265
PA P P S Y F + I VG
Sbjct: 375 PPPAGPRGVPPSPPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAVGA 434
Query: 266 LIGRCGSNISRIRNESGAMIKVYGGKG 292
+IG+ G++I ++ +GA IK+ +G
Sbjct: 435 IIGKKGAHIKQLARFAGASIKIAPAEG 461
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 425 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 479
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 480 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 532
Query: 173 GATIVI 178
A +++
Sbjct: 533 SAEVIV 538
>gi|357140452|ref|XP_003571781.1| PREDICTED: uncharacterized protein LOC100836040 [Brachypodium
distachyon]
Length = 587
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
+FR+++ S ++G +IG++G R++++ EETKA++++ ERV++I +K+ D +
Sbjct: 62 TVFRMLISSTKVGAIIGQKGERVRRLCEETKASVRVIGGHFAAAERVVLIFAKEQPDEPI 121
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A +AL ++ I+ DD + G +A R+LI QA LIG G I +
Sbjct: 122 PPAMDALLRVYQNIVNDD-------GLGMGSDSAVVTRILIPSEQALNLIGEQGSMINLI 174
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S I +L N P +A + DR+V+I G V AL + LR+
Sbjct: 175 EEASQTDIRVLDCNLPP---AALDEDRIVEIWGQPTRVRKALELVARHLRK 222
>gi|302816563|ref|XP_002989960.1| hypothetical protein SELMODRAFT_428421 [Selaginella moellendorffii]
gi|300142271|gb|EFJ08973.1| hypothetical protein SELMODRAFT_428421 [Selaginella moellendorffii]
Length = 393
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 29/175 (16%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR+IVP ++G +IG++G ++++ EET++ IKI D + ER++++S+K D +
Sbjct: 48 DNVFRLIVPLHKVGAIIGRKGEFVKRMCEETRSRIKILDGVPGTLERIVLVSAKEDPEAT 107
Query: 108 VSDAENALQQIAALILKDDDSNSEASK---VAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+S A + L ++ + + + E + + +G V + RLL+ +QAG LIG
Sbjct: 108 ISPAMDGLLRVHRRVTEGSSGDGEPVEHIILPSGLVQS---RLLVTATQAGSLIGRQ--- 161
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+LPLCA A DR+V++ G++ V A+ + + LR+
Sbjct: 162 -----------------EELPLCALA--DDRMVEVQGEILKVQKAMELVVSHLRK 197
>gi|363735768|ref|XP_003641607.1| PREDICTED: poly(rC)-binding protein 3-like [Gallus gallus]
gi|449506326|ref|XP_002191682.2| PREDICTED: poly(rC)-binding protein 3 [Taeniopygia guttata]
Length = 339
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 96/174 (55%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D +NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDITNSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ I+ + + S TS
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED-------ITNSMSNSTA---------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 157 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 208
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 209 LTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 254
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 255 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 285
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 286 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 333
>gi|291400301|ref|XP_002716510.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2-like
isoform 2 [Oryctolagus cuniculus]
Length = 556
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 129/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A EI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 337 AEAEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPF--PHHHSYPEQEIVNLFIPTQ 394
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 395 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 425
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|302770987|ref|XP_002968912.1| hypothetical protein SELMODRAFT_409630 [Selaginella moellendorffii]
gi|300163417|gb|EFJ30028.1| hypothetical protein SELMODRAFT_409630 [Selaginella moellendorffii]
Length = 393
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 29/175 (16%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D +FR+IVP ++G +IG++G ++++ EET++ IKI D + ER++++S+K D +
Sbjct: 48 DNVFRLIVPLHKVGAIIGRKGEFVKRMCEETRSRIKILDGVPGTLERIVLVSAKEDPEAT 107
Query: 108 VSDAENALQQIAALILKDDDSNSEASK---VAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+S A + L ++ + + + E + + +G V + RLL+ +QAG LIG
Sbjct: 108 ISPAMDGLLRVHRRVTEGSSGDGEPVEHIILPSGLVQS---RLLVTATQAGSLIGRQ--- 161
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+LPLCA A DR+V++ G++ V A+ + + LR+
Sbjct: 162 -----------------EELPLCALA--DDRMVEVQGEILKVQKAMELVVSHLRK 197
>gi|327267261|ref|XP_003218421.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Anolis carolinensis]
Length = 576
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 135/306 (44%), Gaps = 59/306 (19%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEG--SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHR 71
V+ P+P R G RE G G S PK+ D RI+VP++ +G +IGKEG
Sbjct: 159 VSSPQPPQRSRRGGHSSREQGPSPGGSSQPKQL----DFPLRILVPTQFVGAIIGKEGLT 214
Query: 72 IQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSN 129
I+ + ++T++ + I + E+ + I ++ + A + I ++ K+ +
Sbjct: 215 IKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG------CSEACRMILDIMQKEAEET 268
Query: 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
A ++ +++L S G LIG G+N++K+ +G I I L +
Sbjct: 269 KSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDL----T 316
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI------ 237
+ +R + + G + A NA EI N+LRE +++++ P N +A+
Sbjct: 317 IYNPERTITVKGSIEACSNAEAEIMNKLREAYENDIVTVNQQANLIPGLNLNALGIFSTG 376
Query: 238 -----------RPA-----QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
RPA PF P + + I VG +IG+ G +I ++ +
Sbjct: 377 LSMLPSGTGVRRPAVSTPYNPFAVP---EQEVVNLFIPTQAVGAIIGKKGQHIKQLARFA 433
Query: 282 GAMIKV 287
GA IK+
Sbjct: 434 GASIKI 439
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 408 LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPEASERMVIITGPPEAQF----- 462
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 463 KAQGRIFGKLKEENFFNPKEEVKLEAHIK-------VPSSAAGRVIGKGGKTVNELQNLT 515
Query: 173 GATIVI 178
A +++
Sbjct: 516 SAEVIV 521
>gi|257831439|gb|ACV71020.1| UPA21 [Capsicum annuum]
Length = 433
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 102/172 (59%), Gaps = 6/172 (3%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK-DNDNV 107
D ++R++VP ++G +IG++G ++K+ E+T A I++ + + +R+++IS + D D
Sbjct: 53 DNVYRLVVPLVKVGSIIGRKGELVKKMCEQTGARIRVLEGPLGNADRIVLISGREDPDAQ 112
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
VS A +A+ ++ + + + A+ A + +LL+A SQA LIG G I++
Sbjct: 113 VSPAMDAVFRVFKRVAGLEGGDPGAAAAGF---AFCSFKLLMASSQAVHLIGRHGSTIKE 169
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
++ SGA++ +L+ + + A+A E R+V+I G+ VL+A + QLR+
Sbjct: 170 IQERSGASLRVLSEDDVVPYATADE--RIVEIRGEGLKVLDAFEAVVRQLRK 219
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Query: 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197
G N RL++ + G +IG G+ ++K+ +GA I +L + PL +DR+V
Sbjct: 49 GWPGDNVYRLVVPLVKVGSIIGRKGELVKKMCEQTGARIRVL---EGPL----GNADRIV 101
Query: 198 QISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN--------YSAIRPAQPFVEPTSA 249
ISG RE+P QV SPA + + + P
Sbjct: 102 LISG----------------REDPDAQV---SPAMDAVFRVFKRVAGLEGGDPGAAAAGF 142
Query: 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ +F++L++ S LIGR GS I I+ SGA ++V
Sbjct: 143 AFCSFKLLMASSQAVHLIGRHGSTIKEIQERSGASLRV 180
>gi|354542956|emb|CCE39674.1| hypothetical protein CPAR2_600900 [Candida parapsilosis]
Length = 375
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 121/267 (45%), Gaps = 27/267 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG+ G I IREET I+ IA ER++ +S K + D
Sbjct: 111 YRVLVSAKEAGCLIGQNGKVIDSIREETNTKAGISRLIAGTHERILTVSGK-----LDDC 165
Query: 112 ENALQQIAALILKDDDSN------SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
AL A +L + S +RLLI SQ G LIG G I
Sbjct: 166 AKALSYFAQALLGSSIETYNYFPLKQLSSTPCVEHETTILRLLIPNSQMGTLIGAKGARI 225
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++++++ G ++ I + + LP ++R+V++ G V + +AL I L E+ V
Sbjct: 226 QQIQHNFGISM-IASKSFLP-----GSNERLVELQGTVDDLYDALRIISRCLIEDFSSSV 279
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMI 285
+ + Y + Q + T+ ++F +VG LIG+ GS I +R SGAMI
Sbjct: 280 GTTT----YYVPKSHQSTRKSTAT--ISF----PNDMVGALIGKNGSRIQGVRKVSGAMI 329
Query: 286 KVYGGKGEQKHRHIQFGGSAQQVALAK 312
+ R G+ Q V AK
Sbjct: 330 GIGEAVEGSDERVFTITGTQQAVEKAK 356
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK-ATIKIADAIARHEERVIIISSKDNDN 106
+ + R+++P+ Q+G +IG +G RIQ+I+ + I + ER++ +
Sbjct: 201 ETTILRLLIPNSQMGTLIGAKGARIQQIQHNFGISMIASKSFLPGSNERLVEL-----QG 255
Query: 107 VVSDAENALQQIAALILKDDDSN--SEASKVAAGHVAA--NTIRLLIAGSQAGCLIGMSG 162
V D +AL+ I+ +++D S+ + V H + +T + G LIG +G
Sbjct: 256 TVDDLYDALRIISRCLIEDFSSSVGTTTYYVPKSHQSTRKSTATISFPNDMVGALIGKNG 315
Query: 163 QNIEKLRNSSGATIVI 178
I+ +R SGA I I
Sbjct: 316 SRIQGVRKVSGAMIGI 331
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
PK + I P+ +G +IGK G RIQ +R+ + A I I +A+ +ERV I+
Sbjct: 287 PKSHQSTRKSTATISFPNDMVGALIGKNGSRIQGVRKVSGAMIGIGEAVEGSDERVFTIT 346
>gi|189234912|ref|XP_969611.2| PREDICTED: similar to AGAP004942-PA [Tribolium castaneum]
Length = 446
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 24/178 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ V+
Sbjct: 17 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIV---------TVT 65
Query: 110 DAENALQQIAALILKD----DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ NA+ + LI K D NS S V + T+RL++ SQ G LIG G I
Sbjct: 66 GSTNAIFKAFTLICKKFEEFQDINSGGSGVPRPPI---TLRLIVPASQCGSLIGKGGSKI 122
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+++R +GA+I + A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 123 KEIREVTGASIQV-ASEMLP-----NSTERAVTISGTGEAITQCIYHICTVMLESPPK 174
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK---HRHIQFGGSAQQVA 309
T EM + L+G +IG+ G+ I+ IR SGAMI++ + R I G+ VA
Sbjct: 267 THEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCDDRESGVTDRTITISGNPDAVA 326
Query: 310 LAKQRVD 316
LA+ ++
Sbjct: 327 LAQYLIN 333
>gi|409045569|gb|EKM55049.1| hypothetical protein PHACADRAFT_95060 [Phanerochaete carnosa
HHB-10118-sp]
Length = 409
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 123/267 (46%), Gaps = 45/267 (16%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+ A ++ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++
Sbjct: 105 SPAANIHMRCLIVTQDASIIIGKAGTHVNEIREKSGARVMVSESIPGNPERIL------- 157
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
NV + + ++ + +D + V A TI+ +I S+ G +IG G
Sbjct: 158 -NVSGPLDAVSKAFGLIVRRINDEPFDKPSVPGSR--AVTIKFMIPNSRMGSVIGKGGAK 214
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I++++++SGA + + LP ++RV+ +SG A+ A IGN L E R
Sbjct: 215 IKEIQDASGARLN-ASEGMLP-----GSTERVLSVSGVADAIHIATYYIGNILIEANERM 268
Query: 225 VISISPAYNYSAIRPA------------------------QPFVEPTSADYVTFEMLISE 260
P+Y S+ RP+ QP P A T ++ I
Sbjct: 269 -----PSYQNSSYRPSSTSRSRAPYQGSSYVPIGHASALLQPHAPPPGAQLQTQQIYIPN 323
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKV 287
LVG +IG+ GS I+ IR+ S + IK+
Sbjct: 324 DLVGCIIGKGGSKINEIRHVSASQIKI 350
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 48/194 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDNDNVV 108
V + ++P+ ++G VIGK G +I++I++ + A + ++ + ERV+ +S V
Sbjct: 193 VTIKFMIPNSRMGSVIGKGGAKIKEIQDASGARLNASEGMLPGSTERVLSVSG------V 246
Query: 109 SDAEN-ALQQIAALILKDDD---------------SNSEA-----SKVAAGHVAA----- 142
+DA + A I ++++ ++ S S A S V GH +A
Sbjct: 247 ADAIHIATYYIGNILIEANERMPSYQNSSYRPSSTSRSRAPYQGSSYVPIGHASALLQPH 306
Query: 143 --------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP-------NQLPLC 187
T ++ I GC+IG G I ++R+ S + I I+ P N P
Sbjct: 307 APPPGAQLQTQQIYIPNDLVGCIIGKGGSKINEIRHVSASQIKIMEPGAVGVGMNGQPAP 366
Query: 188 ASAHESDRVVQISG 201
A+AHE +R+V I+G
Sbjct: 367 AAAHEGERLVVITG 380
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 31/157 (19%)
Query: 137 AGHVAANT-IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+G AAN +R LI A +IG +G ++ ++R SGA +++ +P +R
Sbjct: 103 SGSPAANIHMRCLIVTQDASIIIGKAGTHVNEIREKSGARVMVS--ESIP-----GNPER 155
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT--SADYVT 253
++ +SG + AV A I ++ + +PF +P+ + VT
Sbjct: 156 ILNVSGPLDAVSKAFGLIVRRIND---------------------EPFDKPSVPGSRAVT 194
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG 290
+ +I S +G +IG+ G+ I I++ SGA + G
Sbjct: 195 IKFMIPNSRMGSVIGKGGAKIKEIQDASGARLNASEG 231
>gi|344276217|ref|XP_003409905.1| PREDICTED: poly(rC)-binding protein 4-like [Loxodonta africana]
Length = 362
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 58/281 (20%)
Query: 91 RHEERVIII--SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIR 146
R R+ I S + ++ + A+ ++I D + A+ G+++ T+R
Sbjct: 5 RSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNISRPPVTLR 64
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
L+I SQ G LIG +G I+++R ++GA + + A + LP + ++R V +SG A+
Sbjct: 65 LVIPASQCGSLIGKAGTKIKEIRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAI 118
Query: 207 LNALVEIGNQLRENPPR-QVISISPAYN-----------------YSAIRPAQ------- 241
+ + +I + E+PP+ I P+ + Y A+ PA+
Sbjct: 119 ILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQL 178
Query: 242 -----PFVEPT-------SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
PF P+ S + E L+ L+G +IGR GS IS IR SGA IK+
Sbjct: 179 SGHTVPFASPSVVAGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGN 238
Query: 290 ---GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
G GE RH+ GS +ALA +Y+ + ++ A
Sbjct: 239 QAEGAGE---RHVTITGSPVSIALA-----QYLITACLETA 271
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 61 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 120
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 121 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGAVTPAE 171
Query: 165 IEKLRNSSGATIVILAPN 182
+ KL+ SG T+ +P+
Sbjct: 172 VTKLQQLSGHTVPFASPS 189
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 191 VAGLDPSTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 246
Query: 96 VIIIS 100
+ I+
Sbjct: 247 HVTIT 251
>gi|198458337|ref|XP_002138531.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
gi|198136305|gb|EDY69089.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
Length = 505
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 27/210 (12%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR D D KR + +D + RI++PS G VIGK G IQK+R + KA + + D
Sbjct: 2 KREMNDAGDGPQDQKRNRRNEDTV-RILIPSSIAGAVIGKGGQHIQKMRTQYKAAVSVDD 60
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
++ ER I IS +D E L+ I ++ ++ + + +RL
Sbjct: 61 --SQGPERTIQIS--------ADIEATLEIITEMLKYFEERDEDFD-----------VRL 99
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
LI S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 100 LIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQAQVI 154
Query: 208 NALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 155 EAVREVITLTRDTPIKGAIHNYDPMNFDRV 184
>gi|45553235|ref|NP_996145.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|194876029|ref|XP_001973701.1| GG16232 [Drosophila erecta]
gi|195496648|ref|XP_002095782.1| GE22592 [Drosophila yakuba]
gi|16648354|gb|AAL25442.1| LD32520p [Drosophila melanogaster]
gi|45446078|gb|AAS65095.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|190655484|gb|EDV52727.1| GG16232 [Drosophila erecta]
gi|194181883|gb|EDW95494.1| GE22592 [Drosophila yakuba]
gi|220951950|gb|ACL88518.1| mub-PC [synthetic construct]
Length = 364
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 150/343 (43%), Gaps = 77/343 (22%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVI---LAPNQ----LPLCASAHESDRVV------------ 197
LIG SG I+++R ++G +I + + PN + L SA + + +
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAEQITQCIYQICLVMLESPP 180
Query: 198 -----------QISGDVPAVL---NALVEIGN------QLRENPPRQVIS-----ISPA- 231
Q++G P +L A GN ++ +NP + + ++PA
Sbjct: 181 RGATIPYRPKPQVTG--PVILANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPAS 238
Query: 232 ---YNYSA---------IRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRN 279
N++A +R A P A EM +S L+G +IG+ G+ I+ IR
Sbjct: 239 TGGINHTAALAALAGSQLRTANP---ANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQ 295
Query: 280 ESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
SGAMI++ +G R I G+ VALA+ ++ I
Sbjct: 296 ISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMRI 338
>gi|387915508|gb|AFK11363.1| alphaCP-3 [Callorhinchus milii]
Length = 349
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 19/187 (10%)
Query: 40 DPKRRAKAQDVLF--RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
DPK +V R+++ +++G +IGK+G ++K+REE+ A I I++ ER++
Sbjct: 2 DPKVTEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIV 59
Query: 98 IISSKDNDNVVSDAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
I+ +DA + A + K ++D N+ + A T+RL++ SQ G
Sbjct: 60 TITGP------TDA--IFKAFAMIAFKFEEDINNSMTNSPATSKPPVTLRLVVPASQCGS 111
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG G I+++R S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 112 LIGKGGSKIKEIRESTGAQVQV-AGDMLP-----NSTERAVTISGMPDAIIQCVKQICVV 165
Query: 217 LRENPPR 223
+ E+PP+
Sbjct: 166 MLESPPK 172
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I + + +R+V I+G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGNCPERIVTITGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I + E+ ++ SPA TS VT +++ S
Sbjct: 66 DAIFKAFAMIAFKFEED-INNSMTNSPA---------------TSKPPVTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I IR +GA ++V G
Sbjct: 110 GSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 121/288 (42%), Gaps = 56/288 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGMP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEAS---KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
++QI ++L+ + K A+ V + AG QA + G
Sbjct: 157 ----QCVKQICVVMLESPPKGATIPYRPKPASAPV-------IFAGGQAYTIQGQ----- 200
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
CA H D + +S + L + + QL +P Q+
Sbjct: 201 ---------------------CAIPHPDDACL-LSAEYKTALTSTLWRSPQL-AHPSSQL 237
Query: 226 ISISPAYNYSAIR----------PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
A+ ++R ++ + + T E+ I L+G +IGR G+ I+
Sbjct: 238 KEA--AWRPESLRGKMELKNCNEESENWGMDANPQASTHELTIPNDLIGCIIGRQGTKIN 295
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I GS ++LA+ ++ + S++
Sbjct: 296 EIRQMSGAQIKIANATEGSTERQITITGSPANISLAQYLINARLTSEV 343
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
R + K E+ E G D A Q + +P+ IG +IG++G +I +IR+ + A
Sbjct: 248 RGKMELKNCNEESENWGMD----ANPQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGA 303
Query: 82 TIKIADAIARHEERVIIIS 100
IKIA+A ER I I+
Sbjct: 304 QIKIANATEGSTERQITIT 322
>gi|15237393|ref|NP_199431.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|9757739|dbj|BAB08264.1| unnamed protein product [Arabidopsis thaliana]
gi|14532588|gb|AAK64022.1| unknown protein [Arabidopsis thaliana]
gi|21280941|gb|AAM44907.1| unknown protein [Arabidopsis thaliana]
gi|332007968|gb|AED95351.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 644
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 102/178 (57%), Gaps = 17/178 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII--ISSK 102
++++ + ++I S +IG+VIGK G I+ IR+ + + I++ D+ H++ +I +++
Sbjct: 312 SRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D++ S A A+ L+L++ ++ + KV ++LL++ GC+IG SG
Sbjct: 372 SPDDLKSMAVEAV-----LLLQEKINDEDEDKVK--------MQLLVSSKVIGCIIGKSG 418
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I I N P CA + D +V+ISG+V V +AL++I +LR++
Sbjct: 419 SIISEIRKRTKADIHISKGNNTPKCADPN--DELVEISGEVSNVRDALIQIVLRLRDD 474
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV 107
V++RI+ PS +G VIGK G I IR+ET+A IK+ D ERVI I S + ++
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 108 VS------DAENALQQIAALILKDDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGC 156
V D L A +LK D+ + AA + + RLL+ SQ
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG SG I+ +R + A + +++ + P A + D +V ISG+ +V AL +
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 216 QLRENPPRQVISI 228
+ + PR+ I +
Sbjct: 224 IMYKVSPREQIPL 236
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I + VG ++GR G N+ IR SGAMI++ K R G+++Q A+
Sbjct: 575 TMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAE 634
Query: 313 QRVDEYIYS 321
+I S
Sbjct: 635 NLFQAFIMS 643
>gi|426217762|ref|XP_004003121.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Ovis aries]
Length = 556
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 129/271 (47%), Gaps = 31/271 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A +EI +LRE +++ + Y S++ P PF P Y E + I
Sbjct: 337 AEIEIMKKLREAFENDMLAANTHSGYFSSLCPPHQFGPF--PHHHSYPEQEIVNLFIPTQ 394
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 395 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 425
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 373 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 432
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 433 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 480
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 481 VIGKGGKTVNELQNLTSAEVIV 502
>gi|13605589|gb|AAK32788.1|AF361620_1 AT5g46190/MCL19_25 [Arabidopsis thaliana]
Length = 640
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 102/178 (57%), Gaps = 17/178 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII--ISSK 102
++++ + ++I S +IG+VIGK G I+ IR+ + + I++ D+ H++ +I +++
Sbjct: 312 SRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D++ S A A+ L+L++ ++ + KV ++LL++ GC+IG SG
Sbjct: 372 SPDDLKSMAVEAV-----LLLQEKINDEDEDKVK--------MQLLVSSKVIGCIIGKSG 418
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I I N P CA + D +V+ISG+V V +AL++I +LR++
Sbjct: 419 SIISEIRKRTKADIHISKGNNTPKCADPN--DELVEISGEVSNVRDALIQIVLRLRDD 474
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV 107
V++RI+ PS +G VIGK G I IR+ET+A IK+ D ERVI I S + ++
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 108 VS------DAENALQQIAALILKDDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGC 156
V D L A +LK D+ + AA + + RLL+ SQ
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPN-QLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG SG I+ +R + A + +++ + P A + D +V ISG+ +V AL +
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 216 QLRENPPRQVISI 228
+ + PR+ I +
Sbjct: 224 IMYKVSPREQIPL 236
>gi|291409713|ref|XP_002721143.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
Length = 340
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 148/338 (43%), Gaps = 83/338 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPLV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN------ 220
++R S+GA + + A + LP + ++R + I+G +++ + I + E+
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKHICVVMLESPPKGVT 175
Query: 221 -PPRQVISISP----------------AYN------------------------------ 233
P R S SP AY
Sbjct: 176 IPYRPKPSSSPVIFAGGQDRYSTGSDKAYTIQGQYAIPQPDLTKLHQLAVQQSHFPMTHG 235
Query: 234 ---YSAIRPAQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAM 284
+S I + P V+ SA + E+ I L+G +IG G+ I+ I SGA+
Sbjct: 236 NTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGCQGAKINEICQMSGAL 295
Query: 285 IKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
IK+ R + GSA ++LA+ ++ + S+
Sbjct: 296 IKIANTVEGSTDRQVTITGSAASISLAQYLINVRLSSE 333
>gi|291240053|ref|XP_002739934.1| PREDICTED: far upstream element-binding protein-like [Saccoglossus
kowalevskii]
Length = 767
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 129/284 (45%), Gaps = 33/284 (11%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G VIG+ G +I +++ E+ I+IA +R+ ++ A+
Sbjct: 131 VPDKLVGLVIGRGGEQITRLQAESGCKIQIAQDSGGLPDRMCTLTGN---------PQAI 181
Query: 116 QQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG 173
++ ALI + + + + G + TI L+I ++ G +IG G+ I+KL+ +G
Sbjct: 182 ERAKALIDRIIERGQGPAVGSDGGLGDGNTTIELMIPSNKVGLVIGKGGEMIKKLQERAG 241
Query: 174 ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL---RENPPRQVIS--I 228
+V++ ++ SD+ +++SGD P E+ N+L ++NP ++ +
Sbjct: 242 VKMVMIQ-----DATTSGTSDKPLRVSGD-PQKCKHARELVNELIGDKDNPGMEMFGERM 295
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVT-----------FEMLISESLVGGLIGRCGSNISRI 277
Y+ DY FEML+ VG +IGR G I +I
Sbjct: 296 DGGYDRERDDDRDFERRGGRGDYGPRMGGPPGGGGGFEMLVPRFAVGIVIGRGGDMIKKI 355
Query: 278 RNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
+NE+GA I+ G R GS ++ A++++DE I S
Sbjct: 356 QNETGARIQFRPDDGHSPERLAVISGSDDKIDHAREKIDELIDS 399
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
F ++VP +G VIG+ G I+KI+ ET A I+ ER+ +IS D+
Sbjct: 332 FEMLVPRFAVGIVIGRGGDMIKKIQNETGARIQFRPDDGHSPERLAVISGSDD 384
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
++ E + + LVG +IGR G I+R++ ESG I++ G R G+ Q + A
Sbjct: 125 LSEEYAVPDKLVGLVIGRGGEQITRLQAESGCKIQIAQDSGGLPDRMCTLTGNPQAIERA 184
Query: 312 KQRVDEYI 319
K +D I
Sbjct: 185 KALIDRII 192
>gi|395752934|ref|XP_002830848.2| PREDICTED: poly(rC)-binding protein 3 [Pongo abelii]
Length = 432
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 26/218 (11%)
Query: 10 NPTVSVVTEP--EPRHDVSGKRRREDG--EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVI 65
P+ V EP P V G + G E+ G R A ++L+ ++G +I
Sbjct: 7 GPSAPTVLEPATSPAAPVCGGMFWKPGCMELLGCRGSRAAVGPELLW-------EVGSII 59
Query: 66 GKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125
GK+G ++K+REE+ A I I++ ER++ I+ +DA + A ++
Sbjct: 60 GKKGETVKKMREESGARINISEG--NCPERIVTITGP------TDAIFKAFAMIAYKFEE 111
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
D NS ++ A T+RL++ SQ G LIG G I+++R S+GA + + A + LP
Sbjct: 112 DIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP 169
Query: 186 LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ ++R V ISG A++ + +I + E+PP+
Sbjct: 170 -----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 202
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
+ G +IG G+ ++K+R SGA I I + + +R+V I+G A+ A
Sbjct: 54 EVGSIIGKKGETVKKMREESGARINI---------SEGNCPERIVTITGPTDAIFKAFAM 104
Query: 213 IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGS 272
I + E+ N + PA TS VT +++ S G LIG+ GS
Sbjct: 105 IAYKFEED----------IINSMSNSPA------TSKPPVTLRLVVPASQCGSLIGKGGS 148
Query: 273 NISRIRNESGAMIKVYG 289
I IR +GA ++V G
Sbjct: 149 KIKEIRESTGAQVQVAG 165
>gi|148229933|ref|NP_001086212.1| MGC84166 protein [Xenopus laevis]
gi|49256273|gb|AAH74333.1| MGC84166 protein [Xenopus laevis]
Length = 225
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
+KV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 AKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ I+ N +A TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED------IINSMSNSTA----------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|345320820|ref|XP_001521752.2| PREDICTED: poly(rC)-binding protein 3-like [Ornithorhynchus
anatinus]
Length = 261
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ I+ N +A TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED------IINSMSNSTA----------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|328702411|ref|XP_003241892.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Acyrthosiphon pisum]
Length = 428
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R DG + + D+ R+++PS+ G +IGK G I ++R + AT+ + D
Sbjct: 4 KRFNDGHSNAPFKRPKMGPDDIELRVLIPSKVAGSIIGKGGFNISRLRTDYNATVTVPDC 63
Query: 89 IARHEERVI-IISSKDND-NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ER++ IISS DN V+ + L+ + + + + G +R
Sbjct: 64 PG--PERILTIISSNDNALKVLGEVMGNLEDGGSRFKRGGAGGGQGNNDNQGGETDVDVR 121
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
+L+ SQAGC+IG G +++LR +G+ I I +DRVVQI+G
Sbjct: 122 MLVHQSQAGCIIGKGGLKVKELREKTGSRIKIYT------SCCPMSTDRVVQITGKPNTC 175
Query: 207 LNALVEIGNQLRENP 221
+ + E+ + L+ P
Sbjct: 176 SDCVREVLDLLKTAP 190
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR+++ A I I + +ER+I I+ D+ + A+
Sbjct: 350 QVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITINGTDSQ--IQMAQ 407
Query: 113 NALQQ 117
LQQ
Sbjct: 408 YLLQQ 412
>gi|328702409|ref|XP_001943097.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Acyrthosiphon pisum]
gi|328702413|ref|XP_003241893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Acyrthosiphon pisum]
Length = 426
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+R DG + + D+ R+++PS+ G +IGK G I ++R + AT+ + D
Sbjct: 2 KRFNDGHSNAPFKRPKMGPDDIELRVLIPSKVAGSIIGKGGFNISRLRTDYNATVTVPDC 61
Query: 89 IARHEERVI-IISSKDND-NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ER++ IISS DN V+ + L+ + + + + G +R
Sbjct: 62 PG--PERILTIISSNDNALKVLGEVMGNLEDGGSRFKRGGAGGGQGNNDNQGGETDVDVR 119
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
+L+ SQAGC+IG G +++LR +G+ I I +DRVVQI+G
Sbjct: 120 MLVHQSQAGCIIGKGGLKVKELREKTGSRIKIYT------SCCPMSTDRVVQITGKPNTC 173
Query: 207 LNALVEIGNQLRENP 221
+ + E+ + L+ P
Sbjct: 174 SDCVREVLDLLKTAP 188
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR+++ A I I + +ER+I I+ D+ + A+
Sbjct: 348 QVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITINGTDSQ--IQMAQ 405
Query: 113 NALQQ 117
LQQ
Sbjct: 406 YLLQQ 410
>gi|449493846|ref|XP_002188887.2| PREDICTED: poly(rC)-binding protein 3-like [Taeniopygia guttata]
Length = 352
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 97/175 (55%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGTC--PERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + + T+RL++ SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSSVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 38/272 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 159
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L +S + + + A+ ++ AG Q + +
Sbjct: 160 ----QCVKQICVVML---ESPPKGATIPYRPKPASA-PIIFAGGQV---------RADTI 202
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
S+G V+ P P I G L ++ ++PP
Sbjct: 203 LASAGNHTVLAQPQPAP----------AFTIQGQYAIPHPDLTKLHQLAMQHPP-----F 247
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+P + P PTS+ E+ I L+G +IGR GS I+ IR SGA IK+
Sbjct: 248 TPLGQTTPGFPGLDATTPTSSH----ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIA 303
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320
R + GS ++LA+ ++ IY
Sbjct: 304 NATEGSAERQVTITGSPANISLAQYLINASIY 335
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N++ KV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NTKDGKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ +R+V I+G A+ A I + E+ I+ + S++ T
Sbjct: 53 SEGTCPERIVTITGPTDAIFKAFSMIALKFEED-------INASMTNSSV---------T 96
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
S VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 97 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 138
>gi|294462548|gb|ADE76820.1| unknown [Picea sitchensis]
Length = 340
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 11/148 (7%)
Query: 74 KIREETKATIKIADAIARHEERVIIISSKDN-DNVVSDAENALQQIAALILKDDDSNSEA 132
+IR+ET A IK+ D + +ERVI++SSK+ D+ +S L+ + L K SE
Sbjct: 21 QIRQETGANIKVIDQVPDCDERVIVVSSKEFVDDRISP---TLEAVLHLQFK----TSEK 73
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
S + G T R L+ + GCL+G G I ++R + A I I++ + +P CA E
Sbjct: 74 S-IEEGKEGVITTRFLVPSNSIGCLLGKGGSIISEMRKRTRANIRIMSKDNIPKCAG--E 130
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLREN 220
++ +VQ+ G+V AL++I +LR N
Sbjct: 131 NEELVQVIGEVDVAREALIQIATRLRSN 158
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I VG ++GR GSNIS+IR SGA +K++ K R ++ G+ +Q A+
Sbjct: 262 TVEVTIPNKSVGSILGRGGSNISQIREISGAKVKLHESKPGGTDRVVEISGTPEQTHAAQ 321
Query: 313 QRVDEYIYSQLIQQAG 328
+ + S +AG
Sbjct: 322 SLLQAFAMSGQNSRAG 337
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA--DAIAR----HEERVIIISSKD 103
+ R +VPS IG ++GK G I ++R+ T+A I+I D I + +EE V +I D
Sbjct: 83 ITTRFLVPSNSIGCLLGKGGSIISEMRKRTRANIRIMSKDNIPKCAGENEELVQVIGEVD 142
Query: 104 NDNVVSDAENALQQIAAL----ILKDDDSNSEASKV 135
A AL QIA + KD D S A V
Sbjct: 143 V------AREALIQIATRLRSNVFKDQDGGSNAGSV 172
>gi|432848574|ref|XP_004066413.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 349
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 137/331 (41%), Gaps = 80/331 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+RE++ A I I++ ER++ +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEG--NCPERIVTXXXXXXXIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI---------------- 213
S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGAPEAIIQCVKQICVVMLESPPKGATIPY 180
Query: 214 ------------GNQLRENP---------------PRQVISI------------------ 228
G Q+R +P P +I
Sbjct: 181 RPKPASTPVIFSGGQVRADPLGASTANLSLLLQHQPLPAYTIQGQYAIPHPDLSKLHQLA 240
Query: 229 ---SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMI 285
+P PA P ++ S T E+ I L+G +IGR G+ I+ IR SGA I
Sbjct: 241 MQQTPFTPLGQTTPAFPGLD-ASNQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 299
Query: 286 KVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
K+ R I G+ ++LA+ ++
Sbjct: 300 KIANAMEGSSERQITITGTPANISLAQYLIN 330
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+ + P A Q + +P+ IG +IG++G +I +IR+ + A IKIA+A+
Sbjct: 250 GQTTPAFPGLDASNQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSS 309
Query: 94 ERVIIIS 100
ER I I+
Sbjct: 310 ERQITIT 316
>gi|225429818|ref|XP_002280789.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 420
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-VSD 110
FR+IVP +G +IG+EG I++I E T A I + A + +++IS+K+ ++ +S
Sbjct: 29 FRLIVPGSAVGSIIGREGKIIKRISEGTGARIHVISLPAGTTDCIVLISAKEQPHLRLSP 88
Query: 111 AENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A A+ ++ + L D N SK A V +++ L+ SQA +IG G + +
Sbjct: 89 AMEAVIEVFKRVTGLYPIDGNGMCSK--ASEVKLSSVTFLVGYSQALSIIGKEGSRVRAI 146
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
SSG T+ IL +++P S E R+++I G V V+ A+ + LR
Sbjct: 147 EESSGTTVGIL--SRVPFYVSPDE--RIIKIQGQVLKVMAAMEAVLYHLR 192
>gi|357621941|gb|EHJ73587.1| hypothetical protein KGM_22691 [Danaus plexippus]
Length = 431
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G +++ REE+ A I I+D ER++ V + + +
Sbjct: 4 KEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIV--------TVTGNTSSIFKAF 53
Query: 119 AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
+ K ++ S+ ++ G A T+RL++ SQ G LIG G I+++R+ +G V
Sbjct: 54 TLICKKFEEWCSQFNEGGGGSRAPITLRLIVPASQCGSLIGKGGSKIKEIRDVTGRLYVH 113
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 114 VASEMLP-----NSTERAVTISGTCDAITQCIYHICCVMLESPPK 153
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVA 309
+ EM + L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VA
Sbjct: 279 SHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGSTDRTITISGNPDSVA 338
Query: 310 LAKQRVD 316
LA+ ++
Sbjct: 339 LAQYLIN 345
>gi|326490983|dbj|BAK05591.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 688
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
+++FRI+ P+ + ++G I ++ E +++ D IA +ER +II+S++ D+
Sbjct: 362 EIIFRILCPNDKAISLVGSRDGIIDMLQAEVGVDVRLTDLIAGSDERTLIITSREGPDHE 421
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ AL I I+ D + + T RLL+ S+ C G G ++
Sbjct: 422 LFPAQEALLHIQTFIV---DLGPDKDNII-------TTRLLVPSSEIACFEGRDG-SLSD 470
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ + A + IL +LP C A ESD ++QI G++ A NAL+++ +LR
Sbjct: 471 IQRQTSANVQILPREELPSC--ALESDELIQIVGEIRAARNALMQVTTKLR 519
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI------IISS 101
Q FRI+ P K G I ++++ A I I RVI + +
Sbjct: 107 QTTSFRILCPE---SKAYGFPASFINNAQDDSGAIITIHPPFPGDPVRVIETADGTLREA 163
Query: 102 KDNDNVVSDAENALQQIAALIL--KDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAG 155
+ S A+ AL + IL + DD + + G A + T RL++ G
Sbjct: 164 DGRPPMFSPAQEALLMVHRRILETQPDDGDEDGEYGPRGKDARDRGKVTTRLIVPRQHVG 223
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIG 214
CL+G G+ IE++R+ + I IL Q +P C S S++VVQ+ G+ V A+ I
Sbjct: 224 CLLGKGGKIIEQMRSETKTHIRILPREQNMPRCLSL--SEKVVQVVGEGNNVKKAVAIIS 281
Query: 215 NQLREN 220
++L+E+
Sbjct: 282 DRLKES 287
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 32 EDGEI--EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
EDGE G D + R K V R+IVP + +G ++GK G I+++R ETK I+I
Sbjct: 194 EDGEYGPRGKDARDRGK---VTTRLIVPRQHVGCLLGKGGKIIEQMRSETKTHIRI 246
>gi|301604860|ref|XP_002932078.1| PREDICTED: poly(rC)-binding protein 3-like [Xenopus (Silurana)
tropicalis]
Length = 339
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I N C +R+V I+G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP-----ERIVTITGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I + E+ I+ N +A TS VT +++ S
Sbjct: 66 DAIFKAFAMIAYKFEED------IINSMSNSTA----------TSKPPVTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I IR +GA ++V G
Sbjct: 110 GSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
S+ T E+ I L+G +IGR G+ I+ IR SGA IK+ R I GS
Sbjct: 258 SSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIASAMEGSAERQITITGSPAN 317
Query: 308 VALAKQRVDEYIYSQL 323
++LA+ ++ + S++
Sbjct: 318 ISLAQYLINARLTSEV 333
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A +Q + +P+ IG +IG++G +I +IR+ + A IKIA A+ ER I I+
Sbjct: 257 ASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIASAMEGSAERQITIT 312
>gi|395536907|ref|XP_003770450.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Sarcophilus
harrisii]
Length = 339
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ I+ N +A TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED------IINSMSNSTA----------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 118/288 (40%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 157 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 208
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL H S+ + G P
Sbjct: 209 LTKLHQLAMQQTPFPPLGQTTPAFPGEKLPL----HSSEEAQNLMGQSPG---------- 254
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 255 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 285
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 286 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 333
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 TVNPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGK 67
T P + T P + E + G P A + +P+ IG +IG+
Sbjct: 220 TPFPPLGQTTPAFPGEKLPLHSSEEAQNLMGQSPGLDASPPASTHELTIPNDLIGCIIGR 279
Query: 68 EGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+G +I +IR+ + A IKIA+A ER I I+
Sbjct: 280 QGTKINEIRQMSGAQIKIANATEGSSERQITIT 312
>gi|327260862|ref|XP_003215252.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 339
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 55
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ I+ N +A TS
Sbjct: 56 --ERIVTITGPTDAIFKAFAMIAYKFEED------IINSMSNSTA----------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 157 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 208
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 209 LTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 254
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 255 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 285
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 286 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 333
>gi|17737727|ref|NP_524208.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
gi|1770212|emb|CAA67719.1| nucleic acid binding protein [Drosophila melanogaster]
gi|7296507|gb|AAF51792.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
Length = 386
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALA 311
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VALA
Sbjct: 293 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 352
Query: 312 KQRVDEYI 319
+ ++ I
Sbjct: 353 QYLINMRI 360
>gi|405957027|gb|EKC23265.1| Heterogeneous nuclear ribonucleoprotein K [Crassostrea gigas]
Length = 594
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 29/186 (15%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS 101
+RR V R ++ S+ G +IGK G I+++R++ KA++ + D+ + ERV+ I +
Sbjct: 70 RRRGDGPKVELRFLLASKNAGAIIGKGGSNIKRLRQDYKASVTVPDSTS--PERVLTIGA 127
Query: 102 KDNDNVVSDAENALQQIAAL----ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
N+ + E L I L K++D + E +RLL+ SQAGC+
Sbjct: 128 ----NLGTALECVLDIIPKLEDYKNYKNNDFDCE-------------MRLLVHQSQAGCI 170
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG +G I++LR +GA I + + C + E RVV I G V++ + I + L
Sbjct: 171 IGRAGFKIKELRERTGAQIKVYS----QCCPESTE--RVVAIGGKPKIVVDCIETIHDLL 224
Query: 218 RENPPR 223
+ PP+
Sbjct: 225 QTAPPK 230
>gi|442634098|ref|NP_001262198.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
gi|440216175|gb|AGB94891.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
Length = 368
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALA 311
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VALA
Sbjct: 275 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 334
Query: 312 KQRVDEYI 319
+ ++ I
Sbjct: 335 QYLINMRI 342
>gi|357463999|ref|XP_003602281.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355491329|gb|AES72532.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 646
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 12/182 (6%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDNVV 108
+R++ + G VIGK G I+ IR+ T A I + + +A EER+I IS +D D +
Sbjct: 65 YRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGRM 124
Query: 109 ---SDAENALQQIAALILKDD---DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
S A+ AL I +L++D + + G + RL+++ G L+G G
Sbjct: 125 PQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKGG 184
Query: 163 QNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+ IE++R + I IL + LP C S S+ +VQ++GD+ V NA + I ++LRE+
Sbjct: 185 KIIEQMRIETKTQIRILPRDSYLPRCVSM--SEEIVQVTGDIHNVKNAFLVISSRLRESQ 242
Query: 222 PR 223
R
Sbjct: 243 HR 244
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 109/206 (52%), Gaps = 25/206 (12%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN- 106
+D++FRI+ P ++ +++G+ G ++ +++ ++I+D + +E+++II+S++ N
Sbjct: 329 EDLIFRILCPVDRVDRIVGESGGILELLQDRVGVDVQISDRVGGSDEQMVIITSEEGPND 388
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ A+ AL I I+ DS T RL++ S CL G + ++
Sbjct: 389 TMFPAQEALLHIQTHIVDLSDS-------------IITTRLIVPSSDIECLDGKNA-SLS 434
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++ S+GA++ IL +LP C + +D +VQI G++ A N ++++ +LR R ++
Sbjct: 435 EIERSTGASVQILPREELPPCIA--NTDELVQIVGEIEAARNVILDVTAKLRSYVYRDIL 492
Query: 227 SISPAYNYSAIRPAQPF--VEPTSAD 250
+ + P+ P VE +S++
Sbjct: 493 ------QWDTVPPSAPLPSVEASSSN 512
>gi|409083451|gb|EKM83808.1| hypothetical protein AGABI1DRAFT_117279 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 340
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 125/280 (44%), Gaps = 55/280 (19%)
Query: 48 QDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
QD L R +V ++ G +IGK G + +RE+T ++ I ERV+
Sbjct: 22 QDSLTLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPGVHERVL--------- 72
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT-IRLLIAGSQAGCLIGMSGQNI 165
VS + +A+ + LI+ + S AS V + +T IRLLI+ + G +IG +G I
Sbjct: 73 TVSGSVDAVAKAYTLIITQLVTASPASPVVSSPSTVHTSIRLLISHNLMGTIIGRNGLKI 132
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+ ++++SGA +V + LP ++R+V++ G A+ A+ EIG L E+ R +
Sbjct: 133 KAIQDNSGARMV-ASKEMLP-----QSTERIVEVQGAPEAIGRAVEEIGKCLLEDWERGL 186
Query: 226 ----------------------ISISPAYNYS------------AIRPAQPFVEPTS--- 248
S SP Y A PA P P S
Sbjct: 187 GTVLFHPGTVDDRSGGNRRQGSYSASPQYGAQRRANGDGNVRARASPPASPTHSPISSQP 246
Query: 249 -ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
A+ T + I +VG +IGR G+ I+ IR SG+ I +
Sbjct: 247 PANLRTQNISIPSDMVGCIIGRSGTKITEIRRLSGSKISI 286
>gi|270001418|gb|EEZ97865.1| hypothetical protein TcasGA2_TC000237 [Tribolium castaneum]
Length = 415
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 28/182 (15%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ V+
Sbjct: 15 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIV---------TVT 63
Query: 110 DAENALQQIAALILKD--------DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ NA+ + LI K D NS S V + T+RL++ SQ G LIG
Sbjct: 64 GSTNAIFKAFTLICKKFEEWCSQFQDINSGGSGVPRPPI---TLRLIVPASQCGSLIGKG 120
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+P
Sbjct: 121 GSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTGEAITQCIYHICTVMLESP 174
Query: 222 PR 223
P+
Sbjct: 175 PK 176
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQK---HRHIQFGGSAQQVA 309
T EM + L+G +IG+ G+ I+ IR SGAMI++ + R I G+ VA
Sbjct: 320 THEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCDDRESGVTDRTITISGNPDAVA 379
Query: 310 LAKQRVDEYI 319
LA+ ++ I
Sbjct: 380 LAQYLINMRI 389
>gi|395536909|ref|XP_003770451.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Sarcophilus
harrisii]
Length = 361
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ I+ N +A TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED------IINSMSNSTA----------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 124/290 (42%), Gaps = 48/290 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L +S + + + A+T ++ AG Q + L
Sbjct: 157 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQV---------RADPL 199
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV-LNALVEIGNQLRENPPRQVIS 227
S+ ++L LP +Q +P L L ++ Q PP +
Sbjct: 200 AASTANLSLLLQHQPLP--------AYTIQGQYAIPHPDLTKLHQLAMQQTPFPP--LGQ 249
Query: 228 ISPAY--------------NYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSN 273
+PA+ N P P S T E+ I L+G +IGR G+
Sbjct: 250 TTPAFPGEKLPLHSSEEAQNLMGQSPGLDASPPAS----THELTIPNDLIGCIIGRQGTK 305
Query: 274 ISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
I+ IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 306 INEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 355
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 8 TVNPTVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGK 67
T P + T P + E + G P A + +P+ IG +IG+
Sbjct: 242 TPFPPLGQTTPAFPGEKLPLHSSEEAQNLMGQSPGLDASPPASTHELTIPNDLIGCIIGR 301
Query: 68 EGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+G +I +IR+ + A IKIA+A ER I I+
Sbjct: 302 QGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|388582172|gb|EIM22478.1| eukaryotic type KH-domain (KH-domain type I) [Wallemia sebi CBS
633.66]
Length = 319
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 133/301 (44%), Gaps = 43/301 (14%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V +++ G +IGK G + +RE T ++ IA ERV+ I+ S
Sbjct: 21 LTLRALVSTKEAGIIIGKGGKNVADLRERTGVKAGVSKVIAGVHERVLSITGS-----TS 75
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+A IA IL D+ N + + + A IRLLI+ + G +IG G I++++
Sbjct: 76 AIADAFSIIAQTIL-DNPLNPSTAPLQSPPSATTAIRLLISHNLMGTVIGRQGIKIKQIQ 134
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN--------- 220
++SG +V + LP ++R+V++ G V ++ A+ +I L E+
Sbjct: 135 DTSGVRMV-ASKELLP-----QSTERIVEVQGTVESIHIAINDIAKCLLEDWDRYSGTIL 188
Query: 221 ----PPRQVISISPAYNYSAIRPAQPFVEPTSA-------------DYVTFEMLISESLV 263
PP + + ++N S+IR P + D T + I +V
Sbjct: 189 YTPAPPNEHSLFNSSFNNSSIRSINSVRRPDNFNMQSLNSALPQPRDVRTQHISIPSDMV 248
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG-GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G +IGR GS IS IR S A I + E R G+ + A ++ +YSQ
Sbjct: 249 GPIIGRAGSRISEIRRLSTAKIIIAKQPHDETGERLFTIIGTPE----ANEKALILLYSQ 304
Query: 323 L 323
L
Sbjct: 305 L 305
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 23/176 (13%)
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196
A + T+R L++ +AG +IG G+N+ LR +G + + A HE RV
Sbjct: 15 ADEIDTLTLRALVSTKEAGIIIGKGGKNVADLRERTGVKAGVSK-----VIAGVHE--RV 67
Query: 197 VQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEM 256
+ I+G A+ +A I + +NP ++P+ P P SA +
Sbjct: 68 LSITGSTSAIADAFSIIAQTILDNP------LNPS--------TAPLQSPPSA-TTAIRL 112
Query: 257 LISESLVGGLIGRCGSNISRIRNESGA-MIKVYGGKGEQKHRHIQFGGSAQQVALA 311
LIS +L+G +IGR G I +I++ SG M+ + R ++ G+ + + +A
Sbjct: 113 LISHNLMGTVIGRQGIKIKQIQDTSGVRMVASKELLPQSTERIVEVQGTVESIHIA 168
>gi|327275209|ref|XP_003222366.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 461
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 96/175 (54%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + T+RL+I SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 123/272 (45%), Gaps = 30/272 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 101 VTLRLVIPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 159
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ--AGCLIGMSGQNIE 166
++QI ++L +S + + + A+ ++ AG Q A L+ +G +
Sbjct: 160 ----QCVKQICVVML---ESPPKGATIPYRPKPASA-PIIFAGGQVRADTLLASAGNHAV 211
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+ + I +P H + + + ++L +L ++ ++PP +
Sbjct: 212 LAQPQTAPAFTIQGQYAIP-----HPDVSSMHVLYFLYSLLPSLTKLHQLAMQHPPFTPL 266
Query: 227 S-ISPAY-NYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAM 284
+P + A PA + E+ I L+G +IGR GS I+ IR SGA
Sbjct: 267 GQTTPGFPGLDASTPAS-----------SHELTIPNDLIGCIIGRQGSKINEIRQMSGAQ 315
Query: 285 IKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
IK+ R + GS ++LA+ ++
Sbjct: 316 IKIANATEGSAERQVTITGSPANISLAQYLIN 347
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 26/162 (16%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N++ +KV G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NTKDTKVTEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ +R+V I+G A+ A I + E+ I+ + S + T
Sbjct: 53 SEGSCPERIVTITGPTDAIFKAFSMIALKFEED-------INASMTNSTV---------T 96
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
S VT ++I S G LIG+ GS I IR +GA ++V G
Sbjct: 97 SKPPVTLRLVIPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 138
>gi|30681758|ref|NP_850026.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|330252232|gb|AEC07326.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 632
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 68/295 (23%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV-- 107
R++ + IG +IG G+ + K+R ET I + + V+ I S+ N ++
Sbjct: 27 IRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQSILL 86
Query: 108 -------------------VSDAENALQQI---AALILKDDDSNSEASKVAAGHVAANTI 145
VS A+ AL ++ + ++L D V G
Sbjct: 87 TDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGG----VVDGEDEEAYC 142
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
+L +Q G ++G+ G+N+E +R +SGA I +L P P+C + ++D ++QI+GDV A
Sbjct: 143 GILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGT--KNDELIQITGDVLA 197
Query: 206 VLNALVEIGNQLREN------PPRQVI--------------------------SISPAYN 233
V ALV + + ++ N PP I S+S A
Sbjct: 198 VKKALVMVSSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRSSSLSNATE 257
Query: 234 YSAIRPAQPFVEPTSAD-YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
A P+ S + V F+++ + + GG+IG+ G+ I ++NE+GA I V
Sbjct: 258 IVASNRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV 312
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
V+F+II S G +IGK+G I+ ++ ET A+I + + ERV+ +S+++N ++
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRY 336
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NAL + A ++ D + G + +LL+ A G N E +
Sbjct: 337 SHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKT--KLLVPSHFANSFNG--NGNREAI 392
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN-PPRQVI 226
++GA + I NQ+ S E++ V++I G+ V AL + ++LREN P++V+
Sbjct: 393 I-ATGADVHISVGNQVLEWIS--ENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVL 448
>gi|402862114|ref|XP_003895414.1| PREDICTED: poly(rC)-binding protein 3-like, partial [Papio anubis]
Length = 327
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
>gi|386771595|ref|NP_001246876.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
gi|383292067|gb|AFH04547.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
Length = 433
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALA 311
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VALA
Sbjct: 340 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 399
Query: 312 KQRVDEYI 319
+ ++ I
Sbjct: 400 QYLINMRI 407
>gi|224116392|ref|XP_002317286.1| predicted protein [Populus trichocarpa]
gi|222860351|gb|EEE97898.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 144/351 (41%), Gaps = 87/351 (24%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQD--------VLFRIIVPSRQIGKVIGKEGHRIQKIRE 77
SGKR R + +G ++ D +++RI+ P IG VIGK G I IR
Sbjct: 4 SGKRSRPQRDYDGDTNNQKRHKDDKGTNNDGLIVYRILCPDGVIGSVIGKSGKVINSIRH 63
Query: 78 ETKATIKIADAIARHEERVIIISSK-------------DNDNVVSDAENALQQIAALILK 124
E++A +K+ D ++R+I I ++ N + A++AL ++ A I
Sbjct: 64 ESRARVKVVDPFPGAKDRIITIYCHIKEKEDVDVDDDFNHTNPLCAAQDALLKVHAAI-- 121
Query: 125 DDDSNSEASKVAAGHVAANT--IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
SN+ AS + + ++L+ SQ+ +IG +G I++LR+ + +I I+A +
Sbjct: 122 ---SNAVASLGDSDKRLRDKEECQILVPASQSANIIGKAGATIKRLRSKTRTSIKIIAKD 178
Query: 183 QL-PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------------ 229
P + A + D + I+G+ AV AL + + + P++ I +
Sbjct: 179 STDPTHSCAMDFDNFLLITGESEAVKKALFAVSAIMYKFNPKEEIPLEATVPEPPPSIII 238
Query: 230 ----PAYNYSAIRP-AQPFVE------------------------------------PTS 248
P Y P A+P V P+
Sbjct: 239 PSDVPIYQPGGFYPNAEPIVSSRSVPPILGATHIPELQGYGDMGSSWPVYTSTLPVVPSF 298
Query: 249 ADYVTFEMLISESL-----VGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ 294
+ +E LI L +G +IG+ GS I IR SGA I+V K ++
Sbjct: 299 GNVSRYEELIIRVLCPFDKIGRVIGKGGSTIKSIRQASGARIEVDDTKADR 349
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 39/59 (66%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
++ ++++ R++ P +IG+VIGK G I+ IR+ + A I++ D A +E +I +++ +
Sbjct: 302 SRYEELIIRVLCPFDKIGRVIGKGGSTIKSIRQASGARIEVDDTKADRDECIITVTATE 360
>gi|4314357|gb|AAD15568.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 649
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 68/295 (23%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV-- 107
R++ + IG +IG G+ + K+R ET I + + V+ I S+ N ++
Sbjct: 27 IRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQSILL 86
Query: 108 -------------------VSDAENALQQI---AALILKDDDSNSEASKVAAGHVAANTI 145
VS A+ AL ++ + ++L D V G
Sbjct: 87 TDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGG----VVDGEDEEAYC 142
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
+L +Q G ++G+ G+N+E +R +SGA I +L P P+C + ++D ++QI+GDV A
Sbjct: 143 GILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGT--KNDELIQITGDVLA 197
Query: 206 VLNALVEIGNQLREN------PPRQVI--------------------------SISPAYN 233
V ALV + + ++ N PP I S+S A
Sbjct: 198 VKKALVMVSSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRSSSLSNATE 257
Query: 234 YSAIRPAQPFVEPTSAD-YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
A P+ S + V F+++ + + GG+IG+ G+ I ++NE+GA I V
Sbjct: 258 IVASNRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV 312
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNVV 108
V+F+II S G +IGK+G I+ ++ ET A+I + + ERV+ +S+++N ++
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRY 336
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NAL + A ++ D + G + +LL+ A G N E +
Sbjct: 337 SHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKT--KLLVPSHFANSFNG--NGNREAI 392
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN-PPRQVI 226
++GA + I NQ+ S E++ V++I G+ V AL + ++LREN P++V+
Sbjct: 393 I-ATGADVHISVGNQVLEWIS--ENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVL 448
>gi|74141926|dbj|BAE41029.1| unnamed protein product [Mus musculus]
Length = 278
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
>gi|326917277|ref|XP_003204927.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 448
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 97/175 (55%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + + T+RL++ SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSSVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 115/268 (42%), Gaps = 38/268 (14%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 159
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L +S + + + A+ ++ AG Q + +
Sbjct: 160 ----QCVKQICVVML---ESPPKGATIPYRPKPASA-PIIFAGGQV---------RADTI 202
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
S+G V+ P P I G L ++ ++PP
Sbjct: 203 LASAGNHTVLAQPQPAP----------AFTIQGQYAIPHPDLTKLHQLAMQHPP-----F 247
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+P + P PTS+ E+ I L+G +IGR GS I+ IR SGA IK+
Sbjct: 248 TPLGQTTPGFPGLDATSPTSSH----ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIA 303
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVD 316
R + GS ++LA+ ++
Sbjct: 304 NATEGSAERQVTITGSPANISLAQYLIN 331
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N + SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NPKDSKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ +R+V I+G A+ A I + E+ I+ + S++ T
Sbjct: 53 SEGSCPERIVTITGPTDAIFKAFSMIALKFEED-------INASMTNSSV---------T 96
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
S VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 97 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 138
>gi|147903491|ref|NP_001091320.1| poly(rC) binding protein 1 [Xenopus laevis]
gi|124481736|gb|AAI33216.1| LOC100037147 protein [Xenopus laevis]
Length = 221
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+G+ + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGSQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
+KV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 AKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ I+ N +A TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED------IINSMSNSTA----------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +G+ ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGSQVQVAG 135
>gi|426201505|gb|EKV51428.1| hypothetical protein AGABI2DRAFT_182391 [Agaricus bisporus var.
bisporus H97]
Length = 340
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 125/280 (44%), Gaps = 55/280 (19%)
Query: 48 QDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
QD L R +V ++ G +IGK G + +RE+T ++ I ERV+
Sbjct: 22 QDSLTLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPGVHERVL--------- 72
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT-IRLLIAGSQAGCLIGMSGQNI 165
VS + +A+ + LI+ + S AS V + +T IRLLI+ + G +IG +G I
Sbjct: 73 TVSGSVDAVAKAYTLIITQLVTASPASPVVSSPSTIHTSIRLLISHNLMGTIIGRNGLKI 132
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+ ++++SGA +V + LP ++R+V++ G A+ A+ EIG L E+ R +
Sbjct: 133 KAIQDNSGARMV-ASKEMLP-----QSTERIVEVQGAPEAIGRAVEEIGKCLLEDWERGL 186
Query: 226 ----------------------ISISPAYNYS------------AIRPAQPFVEPTS--- 248
S SP Y A PA P P S
Sbjct: 187 GTVLFHPGTVDDRSGGNRRQGSYSASPQYGAQRRANGDGNVRARASPPASPTHSPISSQP 246
Query: 249 -ADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
A+ T + I +VG +IGR G+ I+ IR SG+ I +
Sbjct: 247 PANLRTQNISIPSDMVGCIIGRSGTKITEIRRLSGSKISI 286
>gi|222618061|gb|EEE54193.1| hypothetical protein OsJ_01028 [Oryza sativa Japonica Group]
Length = 748
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 109/203 (53%), Gaps = 17/203 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-NVV 108
+ FR++ S ++G +IGK G+ I+ I+ +T IK+ D + + E+R++ IS + + +
Sbjct: 414 LTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGDGI 473
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NA+ + I+ SN++ RL+++ +Q GCL+G G I ++
Sbjct: 474 SPAQNAILHVQRKIVP--TSNTKEGPAIC--------RLIVSPNQVGCLLGKGGSIIAEM 523
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
R SGA I++L+ +++P E+D VVQISG A+ AL++I +LR + R +
Sbjct: 524 RKLSGAHIIVLSKDKIP--KGVPENDEVVQISGASEAIQEALMQITARLRNHLFRDRM-- 579
Query: 229 SPAYNYSAIRPAQPFVEPTSADY 251
A ++P V+P Y
Sbjct: 580 --ASTVPNVQPPFGLVDPQFGSY 600
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+FRI+ P+ + G VIGK G I KIR+ET I++ + + +ERVI+I++ D D VS
Sbjct: 89 IFRILCPTSKSGNVIGKGGGIIAKIRQETGVKIRVDEVVPGCDERVIVITAIDKDREVS 147
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
A+G ++RLL+ SQ G L+G +G I+++ S I + + ++LPLCA D
Sbjct: 268 ASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDSCCEIRV-SKDKLPLCALPR--DE 324
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQ 224
+ QI+G++ +V L + L +PP++
Sbjct: 325 LCQITGELDSVRKGLNTVAQLLFTHPPKE 353
>gi|218187831|gb|EEC70258.1| hypothetical protein OsI_01061 [Oryza sativa Indica Group]
Length = 722
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 109/203 (53%), Gaps = 17/203 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-NVV 108
+ FR++ S ++G +IGK G+ I+ I+ +T IK+ D + + E+R++ IS + + +
Sbjct: 388 LTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGDGI 447
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S A+NA+ + I+ SN++ RL+++ +Q GCL+G G I ++
Sbjct: 448 SPAQNAILHVQRKIVP--TSNTKEGPAIC--------RLIVSPNQVGCLLGKGGSIIAEM 497
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
R SGA I++L+ +++P E+D VVQISG A+ AL++I +LR + R +
Sbjct: 498 RKLSGAHIIVLSKDKIP--KGVPENDEVVQISGASEAIQEALMQITARLRNHLFRDRM-- 553
Query: 229 SPAYNYSAIRPAQPFVEPTSADY 251
A ++P V+P Y
Sbjct: 554 --ASTVPNVQPPFGLVDPQFGSY 574
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+FRI+ P+ + G VIGK G I KIR+ET I++ + + +ERVI+I++ D D VS
Sbjct: 89 IFRILCPTSKSGNVIGKGGGIIAKIRQETGVKIRVDEVVPGCDERVIVITAIDKDREVS 147
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 12/179 (6%)
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
A+G ++RLL+ SQ G L+G +G I+++ S I + + ++LPLCA D
Sbjct: 268 ASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDSCCEIRV-SKDKLPLCALPR--DE 324
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQP-FVE-------PT 247
+ QI+G++ +V L + L +PP++ + A+N P F E
Sbjct: 325 LCQITGELDSVRKGLNTVAQLLFTHPPKESDVLG-AHNSGPNVAHLPNFPEALMHGHGSV 383
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
+ +TF +L S VGG+IG+ G+NI I+N++G IKV + + R + G A
Sbjct: 384 PPEPLTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAH 442
>gi|9957161|gb|AAG09238.1|AF176327_1 alphaCP-3 [Mus musculus]
Length = 339
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A+ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIFQCVKQICVVMLESPPK 172
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 117/288 (40%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAIF 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A T ++ AG QA + G
Sbjct: 157 ----QCVKQICVVML---ESPPKGATIPYRPKPACT-PVIFAGGQAYTIQGQYAIPHPDQ 208
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 209 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 254
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 255 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 285
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 286 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 333
>gi|449265657|gb|EMC76819.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 343
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + T+RL++ SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 32/270 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 159
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ--AGCLIGMSGQNIE 166
++QI ++L +S + + + A+ ++ AG Q A ++ +G + E
Sbjct: 160 ----QCVKQICVVML---ESPPKGATIPYRPKPASA-PIIFAGGQVRADTILASAGNHTE 211
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
LR S LC + + I G L ++ ++PP
Sbjct: 212 -LRLSYLTD----------LCLNCACCFQAFTIQGQYAIPHPDLTKLHQLAMQHPP---- 256
Query: 227 SISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
+P + P PTS+ E+ I L+G +IGR GS I+ IR SGA IK
Sbjct: 257 -FTPLGQTTPGFPGLDATTPTSSH----ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIK 311
Query: 287 VYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
+ R + GS ++LA+ ++
Sbjct: 312 IANATEGSAERQVTITGSPANISLAQYLIN 341
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 26/162 (16%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N++ +K G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NTKDTKATEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ +R+V I+G A+ A I + E+ I+ + S + T
Sbjct: 53 SEGSCPERIVTITGPTDAIFKAFSMIALKFEED-------INASMTNSTV---------T 96
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
S VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 97 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 138
>gi|9931476|gb|AAG02185.1| RNA binding protein MCG10 [Homo sapiens]
gi|119585575|gb|EAW65171.1| poly(rC) binding protein 4, isoform CRA_d [Homo sapiens]
gi|119585578|gb|EAW65174.1| poly(rC) binding protein 4, isoform CRA_d [Homo sapiens]
gi|119585579|gb|EAW65175.1| poly(rC) binding protein 4, isoform CRA_d [Homo sapiens]
Length = 369
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 56/270 (20%)
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCL 157
S + ++ + A+ ++I D + A+ G+V+ T+RL+I SQ G L
Sbjct: 23 SCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSL 82
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG +G I+++R ++GA + + A + LP + ++R V +SG A++ + +I +
Sbjct: 83 IGKAGTKIKEIRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVI 136
Query: 218 RENPPR-QVISISPAYN-----------------YSAIRPAQ------------PFVEPT 247
E+PP+ I P+ + Y A+ PA+ PF P+
Sbjct: 137 LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPS 196
Query: 248 -------SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG---GKGEQKHR 297
+ E L+ L+G +IGR GS IS IR SGA IK+ G GE R
Sbjct: 197 VVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE---R 253
Query: 298 HIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
H+ GS +ALA +Y+ + ++ A
Sbjct: 254 HVTITGSPVSIALA-----QYLITACLETA 278
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 68 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 127
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL+
Sbjct: 128 -----CVRQICAVILES 139
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 198 VPGLDPGTQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 253
Query: 96 VIIIS 100
+ I+
Sbjct: 254 HVTIT 258
>gi|149236405|ref|XP_001524080.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452456|gb|EDK46712.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 399
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 28/279 (10%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
D K A A + +R++V +++ G +IG+ G I IR ET I+ ER++ +
Sbjct: 115 DDKSNADAL-INYRVLVSAKEAGCLIGQNGGVIDSIRNETNTKAGISRLTPGTHERILTV 173
Query: 100 SSKDNDNVVSDAENALQQIA------ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
S K + D+ AL A A+ L + + S IRLLI SQ
Sbjct: 174 SGK-----LDDSAKALSYFAQALCDSAIELYNYFPLKQLSSTPCVEGETTIIRLLIPNSQ 228
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G LIG G I++++ S G +++ ++L L S ++R+V++ G V + ++L I
Sbjct: 229 MGTLIGSKGARIQQIQQSFGVSMI---ASKLFLPGS---NERLVELQGTVDDLYDSLRVI 282
Query: 214 GNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSN 273
L E+ V + + Y R Q + T+ + F +VG LIG+ GS
Sbjct: 283 SRCLIEDFSSSVGTTT----YYVPRSHQMTRKSTAT--INFP----NDMVGALIGKNGSR 332
Query: 274 ISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
I +R SGAMI + + R G+ Q V AK
Sbjct: 333 IQGVRKVSGAMIGISEAEDGSDERVFTITGTQQAVEKAK 371
>gi|14141166|ref|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapiens]
gi|157041229|ref|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus musculus]
gi|73996203|ref|XP_534789.2| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Canis lupus
familiaris]
gi|149714829|ref|XP_001504573.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Equus caballus]
gi|297692024|ref|XP_002823365.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pongo abelii]
gi|301775803|ref|XP_002923308.1| PREDICTED: poly(rC)-binding protein 2-like [Ailuropoda melanoleuca]
gi|332206039|ref|XP_003252097.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Nomascus
leucogenys]
gi|332839234|ref|XP_003313706.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pan troglodytes]
gi|395541533|ref|XP_003772697.1| PREDICTED: poly(rC)-binding protein 2 [Sarcophilus harrisii]
gi|403296804|ref|XP_003939285.1| PREDICTED: poly(rC)-binding protein 2 [Saimiri boliviensis
boliviensis]
gi|410964553|ref|XP_003988818.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Felis catus]
gi|426224368|ref|XP_004006343.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Ovis aries]
gi|426372753|ref|XP_004053282.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Gorilla gorilla
gorilla]
gi|2500577|sp|Q61990.1|PCBP2_MOUSE RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=CTBP; Short=CBP; AltName: Full=Putative
heterogeneous nuclear ribonucleoprotein X; Short=hnRNP X
gi|436894|gb|AAA03705.1| nucleic acid binding protein [Mus musculus]
gi|12654635|gb|AAH01155.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|13172240|gb|AAK14059.1| alpha-CP2 [Mus musculus]
gi|50925529|gb|AAH78909.1| Pcbp2 protein [Rattus norvegicus]
gi|119617113|gb|EAW96707.1| poly(rC) binding protein 2, isoform CRA_b [Homo sapiens]
gi|148672029|gb|EDL03976.1| poly(rC) binding protein 2, isoform CRA_c [Mus musculus]
gi|149031920|gb|EDL86832.1| rCG50739, isoform CRA_a [Rattus norvegicus]
gi|158257714|dbj|BAF84830.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 281 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 340
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 341 ISLAQYLINVRLSSE 355
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 270 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 329
Query: 95 RVIIIS 100
R + I+
Sbjct: 330 RQVTIT 335
>gi|432931639|ref|XP_004081713.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Oryzias
latipes]
Length = 343
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ + +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDTIFKA 73
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 74 FA------MIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I + + +R+V I+G
Sbjct: 17 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGNCPERIVTITGPT 67
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
+ A I + E+ N + PA TS VT +++ S
Sbjct: 68 DTIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPPVTLRLVVPASQC 111
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I +R +GA ++V G
Sbjct: 112 GSLIGKGGSKIKEMRESTGAQVQVAG 137
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 267 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQ 326
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 327 YLINARLTSEV 337
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A+ ER I I+
Sbjct: 270 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITIT 316
>gi|148223740|ref|NP_001083021.1| poly(rC)-binding protein 3 [Danio rerio]
gi|134025331|gb|AAI35089.1| Zgc:162999 protein [Danio rerio]
Length = 350
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I +++ ER++ I+ +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSE--GNCPERIVTITGP------T 67
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 68 DAIFKAFAMIAYKFEEDIINSMSNSQATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 39/269 (14%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I+++RE T A +++A D + ER + IS +
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAII- 158
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L +S + + + A T ++ +G Q + L
Sbjct: 159 ----QCVKQICVVML---ESPPKGATIPYRPKPA-TAPVIFSGGQV---------RADTL 201
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV-LNALVEIGNQLRENPPRQVIS 227
+ A + +L +Q PL A +Q +P L L ++ Q
Sbjct: 202 TAPATANLSLLLQHQ-PLPA------YTIQGQYAIPHPDLTKLHQLAMQQ---------- 244
Query: 228 ISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+P + PA P V+ S+ T E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 245 -TPFTSLGQTTPAFPGVD-ASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 302
Query: 288 YGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
R I G+ ++LA+ ++
Sbjct: 303 ANAMEGSSDRQITITGTPANISLAQYLIN 331
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R S A I + N C +R+V I+G
Sbjct: 17 TIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEGN----CP-----ERIVTITGPT 67
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I + E+ I+ N A TS VT +++ S
Sbjct: 68 DAIFKAFAMIAYKFEED------IINSMSNSQA----------TSKPPVTLRLVVPASQC 111
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I +R +GA ++V G
Sbjct: 112 GSLIGKGGSKIKEMRESTGAQVQVAG 137
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+ + P A +Q + +P+ IG +IG++G +I +IR+ + A IKIA+A+
Sbjct: 251 GQTTPAFPGVDASSQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSS 310
Query: 94 ERVIIIS 100
+R I I+
Sbjct: 311 DRQITIT 317
>gi|334187557|ref|NP_196518.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004027|gb|AED91410.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 612
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 10/184 (5%)
Query: 74 KIREETKATIKIADAIARHEERVIIISS-KDNDNVVSDAENALQQIAALILKDDDSNSEA 132
K R T A+I + D +ER++ I++ + ++ S+++ AL L+ + N+ A
Sbjct: 328 KTRSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRAL----VLVFSNMYENATA 383
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ +G ++ T RL++ +Q CL+G G+ ++ +GA I +L Q P C S E
Sbjct: 384 KVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVS--E 441
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY--NYSAIRPAQPFVEPTSAD 250
+++VVQISG+ P V A+ ++ + LRE+ Q Y NYS P PT+
Sbjct: 442 NNQVVQISGEFPNVREAINQVTSMLREDLINQSFQRGSQYAVNYSE-DPFPELFSPTAGY 500
Query: 251 YVTF 254
TF
Sbjct: 501 TPTF 504
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 30/194 (15%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI------------------ADAIAR 91
V FRI+ Q G VIGK G ++K+ + T+++I + +++R
Sbjct: 30 VTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVSR 89
Query: 92 HEERVII--ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
+ VI+ +S+++ + E + Q A + + EA + + LL+
Sbjct: 90 VKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRV------FEALNFGDCTSSTVSCNLLM 143
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-VPAVLN 208
GS +IG +G+ ++++ +G V L + L +C + D V++I G+ + AV+
Sbjct: 144 EGSHVVTVIGKNGELMQRILEETGCN-VQLRSHDLSICTNP--GDVVLKIEGNRLSAVMK 200
Query: 209 ALVEIGNQLRENPP 222
ALV I ++L+ PP
Sbjct: 201 ALVSISSRLQACPP 214
>gi|118086587|ref|XP_419049.2| PREDICTED: poly(rC)-binding protein 3 [Gallus gallus]
Length = 448
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + T+RL++ SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 115/268 (42%), Gaps = 38/268 (14%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 159
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L +S + + + A+ ++ AG Q + +
Sbjct: 160 ----QCVKQICVVML---ESPPKGATIPYRPKPASA-PIIFAGGQV---------RADTI 202
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
S+G V+ P P I G L ++ ++PP
Sbjct: 203 LASAGNHTVLAQPQPAP----------AFTIQGQYAIPHPDLTKLHQLAMQHPP-----F 247
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+P + P PTS+ E+ I L+G +IGR GS I+ IR SGA IK+
Sbjct: 248 TPLGQTTPGFPGLDATSPTSSH----ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIA 303
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVD 316
R + GS ++LA+ ++
Sbjct: 304 NATEGSAERQVTITGSPANISLAQYLIN 331
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 26/162 (16%)
Query: 129 NSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
N + SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I
Sbjct: 2 NPKDSKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--------- 52
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ +R+V I+G A+ A I + E+ I+ + S + T
Sbjct: 53 SEGSCPERIVTITGPTDAIFKAFSMIALKFEED-------INASMTNSTV---------T 96
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
S VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 97 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 138
>gi|354490191|ref|XP_003507243.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cricetulus
griseus]
gi|344239259|gb|EGV95362.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 362
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK R + GSA
Sbjct: 281 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGSAAS 340
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 341 ISLAQYLINVRLSSE 355
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IK A+ + +
Sbjct: 270 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTD 329
Query: 95 RVIIIS 100
R + I+
Sbjct: 330 RQVTIT 335
>gi|195128219|ref|XP_002008562.1| GI13561 [Drosophila mojavensis]
gi|193920171|gb|EDW19038.1| GI13561 [Drosophila mojavensis]
Length = 362
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G + + REE+ A I I+D ER++ VS
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIV---------TVS 72
Query: 110 DAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
NA+ LI K ++ S+ + V IRL++ SQ G LIG SG I+++
Sbjct: 73 GTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEI 132
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R ++G +I + A LP + ++R V +SG + + +I + E+PPR
Sbjct: 133 RQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVMLESPPR 181
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALA 311
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VALA
Sbjct: 269 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 328
Query: 312 KQRVDEYI 319
+ ++ I
Sbjct: 329 QYLINMRI 336
>gi|193083110|ref|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo sapiens]
gi|291389255|ref|XP_002711064.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
gi|348581079|ref|XP_003476305.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cavia porcellus]
gi|184186908|gb|ACC69194.1| poly(rC) binding protein 2 [Mus musculus]
gi|208967068|dbj|BAG73548.1| poly(rC) binding protein 2 [synthetic construct]
Length = 361
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 234 YSAIRPAQPFVE-----PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+S I + P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 261 FSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA 320
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 321 NPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 354
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 264 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 323
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 324 EGSTDRQVTIT 334
>gi|410969851|ref|XP_003991405.1| PREDICTED: poly(rC)-binding protein 3 [Felis catus]
Length = 361
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 344
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 345 YLINARLTSEV 355
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|384947752|gb|AFI37481.1| poly(rC)-binding protein 3 isoform 1 [Macaca mulatta]
Length = 370
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 65/287 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG---MSGQNI 165
++QI ++L +S + + + A+T ++ AG QA + G + ++
Sbjct: 189 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDL 240
Query: 166 EKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
KL + G T +LPL +S + + Q SG
Sbjct: 241 TKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG--------------- 285
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 286 LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKINE 317
Query: 277 IRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 318 IRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 364
>gi|380798665|gb|AFE71208.1| poly(rC)-binding protein 3 isoform 1, partial [Macaca mulatta]
Length = 370
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 45 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 96
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 97 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 155
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 156 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 203
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 34 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 86
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 87 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 128
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 129 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 166
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 129 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 187
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 188 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 239
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 240 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 285
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 286 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 316
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 317 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 364
>gi|9957165|gb|AAG09240.1|AF176329_1 alphaCP-3 [Homo sapiens]
Length = 339
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 157 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 208
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 209 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 254
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 255 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 285
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 286 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 333
>gi|66472276|ref|NP_001018567.1| poly(rC) binding protein 3 [Danio rerio]
gi|63101380|gb|AAH95089.1| Poly(rC) binding protein 3 [Danio rerio]
gi|182890686|gb|AAI65090.1| Pcbp3 protein [Danio rerio]
Length = 241
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 67
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 68 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEMR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQICVVMLESPPK 174
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I + + +R+V I+G
Sbjct: 17 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGNCPERIVTITGPT 67
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I + E+ N + PA TS VT +++ S
Sbjct: 68 DAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPPVTLRLVVPASQC 111
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I +R +GA ++V G
Sbjct: 112 GSLIGKGGSKIKEMRESTGAQVQVAG 137
>gi|354490195|ref|XP_003507245.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cricetulus
griseus]
Length = 349
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK R + GSA
Sbjct: 268 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGSAAS 327
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 328 ISLAQYLINVRLSSE 342
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IK A+ + +R + I+
Sbjct: 267 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTIT 322
>gi|109065035|ref|XP_001099540.1| PREDICTED: poly(rC)-binding protein 3-like isoform 4 [Macaca
mulatta]
Length = 370
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 65/287 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG---MSGQNI 165
++QI ++L +S + + + A+T ++ AG QA + G + ++
Sbjct: 189 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDL 240
Query: 166 EKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
KL + G T +LPL +S + + Q SG
Sbjct: 241 TKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG--------------- 285
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 286 LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKINE 317
Query: 277 IRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 318 IRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 364
>gi|119629730|gb|EAX09325.1| poly(rC) binding protein 3, isoform CRA_c [Homo sapiens]
Length = 370
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 65/287 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG---MSGQNI 165
++QI ++L +S + + + A+T ++ AG QA + G + ++
Sbjct: 189 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDL 240
Query: 166 EKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
KL + G T +LPL +S + + Q SG
Sbjct: 241 TKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG--------------- 285
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 286 LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKINE 317
Query: 277 IRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 318 IRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 364
>gi|332872312|ref|XP_001157899.2| PREDICTED: poly(rC)-binding protein 3 isoform 8 [Pan troglodytes]
gi|397506692|ref|XP_003823855.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Pan paniscus]
gi|426393341|ref|XP_004062983.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 371
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 240
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 241 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 286
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 287 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 317
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 318 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 365
>gi|395851184|ref|XP_003798146.1| PREDICTED: poly(rC)-binding protein 3 [Otolemur garnettii]
Length = 361
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIVNSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IVNSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 344
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 345 YLINARLTSEV 355
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|62087230|dbj|BAD92062.1| poly(rC)-binding protein 2 isoform b variant [Homo sapiens]
Length = 373
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 78
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 79 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 133
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 134 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 186
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 27 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 77
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 78 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 121
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 122 GSLIGKGGCKIKEIRESTGAQVQVAG 147
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 292 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 351
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 352 ISLAQYLINVRLSSE 366
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 276 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 335
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 336 EGSTDRQVTIT 346
>gi|148699884|gb|EDL31831.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699885|gb|EDL31832.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699886|gb|EDL31833.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699889|gb|EDL31836.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699890|gb|EDL31837.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|149043678|gb|EDL97129.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043679|gb|EDL97130.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043680|gb|EDL97131.1| rCG61051, isoform CRA_b [Rattus norvegicus]
Length = 339
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 157 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 208
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 209 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 254
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 255 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 285
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 286 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 333
>gi|126345443|ref|XP_001362482.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Monodelphis
domestica]
gi|351706147|gb|EHB09066.1| Poly(rC)-binding protein 2 [Heterocephalus glaber]
gi|440900676|gb|ELR51755.1| Poly(rC)-binding protein 2, partial [Bos grunniens mutus]
Length = 351
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 281 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 340
Query: 308 VALAKQRVD 316
++LA+ ++
Sbjct: 341 ISLAQYLIN 349
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 270 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 329
Query: 95 RVIIIS 100
R + I+
Sbjct: 330 RQVTIT 335
>gi|194306631|ref|NP_065389.2| poly(rC)-binding protein 3 isoform 1 [Homo sapiens]
gi|296439262|sp|P57721.2|PCBP3_HUMAN RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|119629729|gb|EAX09324.1| poly(rC) binding protein 3, isoform CRA_b [Homo sapiens]
Length = 371
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 240
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 241 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 286
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 287 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 317
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 318 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 365
>gi|344306639|ref|XP_003421993.1| PREDICTED: poly(rC)-binding protein 3 [Loxodonta africana]
Length = 396
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 71 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 122
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 123 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 181
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 182 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 229
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 60 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 110
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 111 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 154
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 155 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 192
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 155 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 213
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 214 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 265
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 266 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 311
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 312 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 342
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I GS ++LA+ ++ + S++
Sbjct: 343 EIRQMSGAQIKIANATEGSSERQITITGSPANISLAQYLINARLTSEV 390
>gi|115495373|ref|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus]
gi|301767382|ref|XP_002919105.1| PREDICTED: poly(rC)-binding protein 3-like [Ailuropoda melanoleuca]
gi|359323604|ref|XP_848733.3| PREDICTED: poly(rC)-binding protein 3 [Canis lupus familiaris]
gi|109659150|gb|AAI18167.1| Poly(rC) binding protein 3 [Bos taurus]
gi|296490840|tpg|DAA32953.1| TPA: poly(rC) binding protein 3 [Bos taurus]
Length = 361
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 344
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 345 YLINARLTSEV 355
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|26330216|dbj|BAC28838.1| unnamed protein product [Mus musculus]
Length = 370
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 65/287 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG---MSGQNI 165
++QI ++L +S + + + A+T ++ AG QA + G + ++
Sbjct: 189 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDL 240
Query: 166 EKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
KL + G T +LPL +S + + Q SG
Sbjct: 241 TKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG--------------- 285
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 286 LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKINE 317
Query: 277 IRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 318 IRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 364
>gi|27503479|gb|AAH42440.1| Pcbp3 protein [Mus musculus]
Length = 249
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
>gi|77736367|ref|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus]
gi|157057549|ref|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus musculus]
gi|291389257|ref|XP_002711065.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
gi|348581077|ref|XP_003476304.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cavia porcellus]
gi|426224370|ref|XP_004006344.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Ovis aries]
gi|74268197|gb|AAI03398.1| Poly(rC) binding protein 2 [Bos taurus]
gi|119617114|gb|EAW96708.1| poly(rC) binding protein 2, isoform CRA_c [Homo sapiens]
gi|148672028|gb|EDL03975.1| poly(rC) binding protein 2, isoform CRA_b [Mus musculus]
gi|149031923|gb|EDL86835.1| rCG50739, isoform CRA_d [Rattus norvegicus]
gi|296487920|tpg|DAA30033.1| TPA: poly(rC) binding protein 2 [Bos taurus]
Length = 349
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 268 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 327
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 328 ISLAQYLINVRLSSE 342
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 267 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 322
>gi|403297203|ref|XP_003939468.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 371
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 240
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 241 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 286
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 287 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 317
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 318 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 365
>gi|148699887|gb|EDL31834.1| poly(rC) binding protein 3, isoform CRA_c [Mus musculus]
Length = 373
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 49 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 100
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 101 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 159
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 207
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 38 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 90
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 91 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 132
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 133 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 170
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 65/287 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 133 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 191
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG---MSGQNI 165
++QI ++L +S + + + A+T ++ AG QA + G + ++
Sbjct: 192 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDL 243
Query: 166 EKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
KL + G T +LPL +S + + Q SG
Sbjct: 244 TKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG--------------- 288
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 289 LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKINE 320
Query: 277 IRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 321 IRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 367
>gi|194384644|dbj|BAG59482.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
>gi|440894425|gb|ELR46887.1| Poly(rC)-binding protein 3 [Bos grunniens mutus]
Length = 374
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 49 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 100
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 101 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 159
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 160 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 207
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 38 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 88
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 89 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 132
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 133 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 170
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 133 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 191
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 192 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 243
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 244 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 289
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 290 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 320
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 321 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 368
>gi|171906586|ref|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus]
gi|296439279|sp|P57722.3|PCBP3_MOUSE RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|26348076|dbj|BAC37686.1| unnamed protein product [Mus musculus]
gi|148699881|gb|EDL31828.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699882|gb|EDL31829.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699883|gb|EDL31830.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699888|gb|EDL31835.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
Length = 371
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 240
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 241 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 286
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 287 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 317
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 318 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 365
>gi|338720838|ref|XP_001488421.3| PREDICTED: poly(rC)-binding protein 3 [Equus caballus]
Length = 393
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 317 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 376
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 377 YLINARLTSEV 387
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 320 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 366
>gi|354476790|ref|XP_003500606.1| PREDICTED: poly(rC)-binding protein 3 [Cricetulus griseus]
gi|149043674|gb|EDL97125.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043675|gb|EDL97126.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043676|gb|EDL97127.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043677|gb|EDL97128.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|344241934|gb|EGV98037.1| Poly(rC)-binding protein 3 [Cricetulus griseus]
Length = 371
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 188
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 189 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 240
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 241 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 286
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 287 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 317
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 318 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 365
>gi|348554794|ref|XP_003463210.1| PREDICTED: poly(rC)-binding protein 3-like [Cavia porcellus]
Length = 384
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 59 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 110
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 111 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 169
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 170 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 217
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 48 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 98
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 99 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 142
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 143 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 180
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 66/288 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 143 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 201
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 202 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 253
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 254 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 299
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 300 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 330
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 331 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 378
>gi|348519759|ref|XP_003447397.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Oreochromis niloticus]
Length = 581
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 121/269 (44%), Gaps = 43/269 (15%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R + D R++VP++ +G +IGKEG+ I+ + ++T++ + I + E+ + I S+
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDIHRKENAGAAEKPITIHST 252
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A + I ++ K+ + + +++L S G LIG
Sbjct: 253 PEG------CSAACRMILDIMQKEANETKTTEDIP--------LKILAHNSLVGRLIGKE 298
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I + L + + +R + + G + A A VEI +LRE
Sbjct: 299 GRNLKKIEEDTGTKITISSLQDL----TIYNPERTITVKGSIDACCKAEVEITKKLREAY 354
Query: 222 PRQVISIS------PAYNYSAI----------------RPAQPFVEPTSA-DYVTFEMLI 258
+ +I+ P N +A+ R A P V P A + + I
Sbjct: 355 ENDIAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGPRSAVPAVAPQQAPEQEVVYLFI 414
Query: 259 SESLVGGLIGRCGSNISRIRNESGAMIKV 287
VG LIG+ G +I ++ + +GA IK+
Sbjct: 415 PTQAVGALIGKKGQHIKQLAHFAGASIKI 443
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 21/161 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISS 101
++A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 402 QQAPEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG 460
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A+ Q LK+++ S +V + + S AG +IG
Sbjct: 461 ------TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKG 508
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISG 201
G+ + +L+N + A +++ P + E+D V V+ISG
Sbjct: 509 GKTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISG 543
>gi|134026176|gb|AAI35317.1| LOC733863 protein [Xenopus (Silurana) tropicalis]
Length = 475
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 17/175 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITGP------T 68
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA + + + LK ++D N+ + T+RL++ SQ G LIG G I+++
Sbjct: 69 DA--IFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 126
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 RESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 175
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 54/288 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 101 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 159
Query: 109 SDAENALQQIAALILKDDDSNSEASK----------VAAGHVAANTI------RLLIAGS 152
++QI ++L+ + A G V A TI ++A
Sbjct: 160 ----QCVKQICVVMLESPPKGATIPYRPKPASGPIIFAGGQVRAETILASAGNHTVLAQP 215
Query: 153 QAGCLIGMSGQNIEKLRNSSGA----TIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
Q + GQ + S A T++ L +C H +L+
Sbjct: 216 QPAPAFAIQGQYAIPHPDVSSAHANYTLLFLF-----ICFGQH--------------LLS 256
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIG 268
L ++ ++ P +P + P PTS+ E+ I L+G +IG
Sbjct: 257 TLTKLHQLAMQHTP-----FTPLGQTTPGFPGLDATSPTSSH----ELTIPNDLIGCIIG 307
Query: 269 RCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
R GS I+ IR SGA IK+ R + GS ++LA+ ++
Sbjct: 308 RQGSKINEIRQMSGAQIKIANASEGNGERQVTITGSPANISLAQYLIN 355
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I + +R+V I+G
Sbjct: 18 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGSCPERIVTITGPT 68
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I + E+ I+ + S + TS VT +++ S
Sbjct: 69 DAIFKAFSMIALKFEED-------INASMTNSTV---------TSKPPVTLRLVVPASQC 112
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I IR +GA ++V G
Sbjct: 113 GSLIGKGGSKIKEIRESTGAQVQVAG 138
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+ P A + + +P+ IG +IG++G +I +IR+ + A IKIA+A +
Sbjct: 275 GQTTPGFPGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANASEGNG 334
Query: 94 ER-VIIISSKDNDNVVSDAENALQQIAAL 121
ER V I S N ++ NA ++A L
Sbjct: 335 ERQVTITGSPANISLAQYLINASLEMAKL 363
>gi|126345445|ref|XP_001362564.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Monodelphis
domestica]
Length = 338
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 268 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 327
Query: 308 VALAKQRVD 316
++LA+ ++
Sbjct: 328 ISLAQYLIN 336
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 267 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 322
>gi|195377361|ref|XP_002047459.1| GJ11921 [Drosophila virilis]
gi|194154617|gb|EDW69801.1| GJ11921 [Drosophila virilis]
Length = 589
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 18/175 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G + + REE+ A I I+D ER++ VS
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIV---------TVS 72
Query: 110 DAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
NA+ LI K ++ S+ + V IRL++ SQ G LIG SG I+++
Sbjct: 73 GTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEI 132
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R ++G +I + A LP + ++R V +SG + + +I + E+PPR
Sbjct: 133 RQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLVMLESPPR 181
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALA 311
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VALA
Sbjct: 269 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 328
Query: 312 KQRVD 316
+ ++
Sbjct: 329 QYLIN 333
>gi|355560220|gb|EHH16906.1| hypothetical protein EGK_13160 [Macaca mulatta]
Length = 361
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 344
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 345 YLINARLTSEV 355
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|1360003|emb|CAA66619.1| nuclear poly(C)-binding protein, splicevariant E [Mus musculus]
Length = 349
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +I R G+ I+ IR SGA IK+ R + GSA
Sbjct: 268 SAQTTSHELTIPNDLIGCIIRRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 327
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 328 ISLAQYLINVRLSSE 342
>gi|332256670|ref|XP_003277439.1| PREDICTED: poly(rC)-binding protein 3 [Nomascus leucogenys]
Length = 393
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 85
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 86 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 317 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 376
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 377 YLINARLTSEV 387
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 320 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 366
>gi|351697348|gb|EHB00267.1| Poly(rC)-binding protein 3 [Heterocephalus glaber]
Length = 427
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 89 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 140
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 141 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 199
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 200 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 247
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 123/289 (42%), Gaps = 55/289 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 173 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 231
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 232 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYA------ 277
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
P+ PL ++ ++Q L L ++ Q PP +
Sbjct: 278 -----------IPHPDPLAHGLYQPSAILQ--------LTKLHQLAMQQTPFPP--LGQT 316
Query: 229 SPAY--------------NYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
+PA+ N P P S T E+ I L+G +IGR G+ I
Sbjct: 317 NPAFPGEKLPLHSSEEAQNLMGQSPGLDASPPAS----THELTIPNDLIGCIIGRQGTKI 372
Query: 275 SRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
+ IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 373 NEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 421
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 78 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 128
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 129 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 172
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 173 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 210
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E + G P A + +P+ IG +IG++G +I +IR+ + A IKIA+A
Sbjct: 332 EAQNLMGQSPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG 391
Query: 92 HEERVIIIS 100
ER I I+
Sbjct: 392 SSERQITIT 400
>gi|119629731|gb|EAX09326.1| poly(rC) binding protein 3, isoform CRA_d [Homo sapiens]
Length = 393
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 85
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 86 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 317 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 376
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 377 YLINARLTSEV 387
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 320 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 366
>gi|380792087|gb|AFE67919.1| poly(rC)-binding protein 2 isoform g, partial [Macaca mulatta]
Length = 193
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 26/166 (15%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQV 308
G LIG+ G I IR +GA ++V G R I G Q +
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 155
>gi|297596401|ref|NP_001042525.2| Os01g0235800 [Oryza sativa Japonica Group]
gi|56783855|dbj|BAD81267.1| HEN4 -like [Oryza sativa Japonica Group]
gi|255673037|dbj|BAF04439.2| Os01g0235800 [Oryza sativa Japonica Group]
Length = 449
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 100/174 (57%), Gaps = 13/174 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-N 106
+ + FR++ S ++G +IGK G+ I+ I+ +T IK+ D + + E+R++ IS + +
Sbjct: 113 EPLTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGD 172
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+S A+NA+ + I+ ++ E + RL+++ +Q GCL+G G I
Sbjct: 173 GISPAQNAILHVQRKIVPTSNTK-EGPAIC---------RLIVSPNQVGCLLGKGGSIIA 222
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
++R SGA I++L+ +++P E+D VVQISG A+ AL++I +LR +
Sbjct: 223 EMRKLSGAHIIVLSKDKIP--KGVPENDEVVQISGASEAIQEALMQITARLRNH 274
>gi|407924223|gb|EKG17277.1| K-like protein [Macrophomina phaseolina MS6]
Length = 357
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 123/289 (42%), Gaps = 64/289 (22%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A+AQ + R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 41 AQAQ-LTLRAIVSSKEAGVIIGKAGQNVANLRDETGVRAGVSKVVPGVHDRVLTVT---- 95
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV----AANTIRLLIAGSQAGCLIGM 160
+S A +A +L+ A V G V + +RLLI+ +Q G +IG
Sbjct: 96 -GALSGISKAYHLVAKGLLEG------APSVGMGGVINTSGTHPVRLLISHNQMGTIIGR 148
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE- 219
+G I++++++SG +V LP ++R+V+I G + A EIG L +
Sbjct: 149 AGLKIKQIQDASGVRMV-AQKEMLP-----QSTERIVEIQGTPEGIEKATWEIGKCLIDD 202
Query: 220 ----------NPPRQV--------------------------ISISPAYNY-----SAIR 238
NP +V S SP Y+ +A R
Sbjct: 203 HERGYGTVLYNPAVRVQAGTTGPVTNGFTGNRSYNRTGHGNDFSDSPTYSRRSGSDAASR 262
Query: 239 PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P P + T + I +VG +IGR GS IS IR SGA I +
Sbjct: 263 PPMPTTTEDGEEIQTQNISIPSDMVGCIIGRGGSKISEIRKSSGARISI 311
>gi|391348567|ref|XP_003748518.1| PREDICTED: poly(rC)-binding protein 3-like [Metaseiulus
occidentalis]
Length = 418
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 11/177 (6%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND--NV 107
+ R+I+ +++G +IGK+G I+K RE++ A I I+D ER++ ++
Sbjct: 12 LTVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISDGTC--PERIVTVTGSTECILKA 69
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIE 166
S +++++L +S KV G T+RL++ SQ G LIG +G I
Sbjct: 70 FSLICAKFEEMSSLSGSPTESALNGQKVLPGQTPPPVTLRLIVPASQCGSLIGKAGSKIR 129
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA++ + A LP + ++R V ++G AV + +I + E PP+
Sbjct: 130 EIREITGASVQV-ASEMLP-----NSTERTVTVAGTADAVTKCIYQICCVMLECPPK 180
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 21/147 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+++ G + G +IG G NI+K R SGA I I + +R+V ++G
Sbjct: 13 TVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINI---------SDGTCPERIVTVTGST 63
Query: 204 PAVLNALVEIGNQLRENPPRQVISISP---AYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+L A I + E +S SP A N + P Q + VT +++
Sbjct: 64 ECILKAFSLICAKFEE---MSSLSGSPTESALNGQKVLPGQ------TPPPVTLRLIVPA 114
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKV 287
S G LIG+ GS I IR +GA ++V
Sbjct: 115 SQCGSLIGKAGSKIREIREITGASVQV 141
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T EM I L+G +IG+ G I+ IR SGA IK+ + K R + G+ + + LA+
Sbjct: 306 TQEMQIPNDLIGCVIGKGGQKINEIRQLSGATIKISSTEEGSKERCVSISGTPEAINLAQ 365
Query: 313 QRVD 316
++
Sbjct: 366 YLIN 369
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+P+ IG VIGK G +I +IR+ + ATIKI+ +ER + IS
Sbjct: 311 IPNDLIGCVIGKGGQKINEIRQLSGATIKISSTEEGSKERCVSIS 355
>gi|386771590|ref|NP_001246875.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
gi|383292065|gb|AFH04546.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
Length = 573
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSC--PERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS NA+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTNAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 142/323 (43%), Gaps = 44/323 (13%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-D 87
++ E+ + +D + K Q + R+IVP+ Q G +IGK G +I++IR+ T +I++A +
Sbjct: 87 KKFEEWCSQFNDVGKVGKTQ-IPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASE 145
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
+ ER + +S AE Q I + L +S + + T +
Sbjct: 146 MLPNSTERAVTLSG--------SAEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGPV 197
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL---------PLCASAHESDRVVQ 198
++A QA + G + + + LA L PL AH
Sbjct: 198 ILANGQA---FTIQGNYAVPTQETCPVFPLALATGGLHAGISGLADPLLKGAH------- 247
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQVIS-----ISPAYNYSAIRPAQPFVEPTSADYVT 253
+ G +PA + L ++ + + +NP + + ++PA A P A
Sbjct: 248 LQGAIPAHHHHLQQMPD-VAKNPLASLAALGLAGMNPASTGGINHTANPA---NRAQQQQ 303
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVAL 310
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VAL
Sbjct: 304 HEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVAL 363
Query: 311 AKQRVD---EYIYSQLIQQAGAQ 330
A+ ++ E + L++QA +Q
Sbjct: 364 AQYLINMSVELQKANLLEQAQSQ 386
>gi|21553916|gb|AAM62999.1| unknown [Arabidopsis thaliana]
Length = 644
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII--SSKDNDNV 107
V++RI+ PS +G VIGK G I IR+ET+A IK+ D ERVI I S + ++
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 108 VS------DAENALQQIAALILKDDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGC 156
V D L A +LK D+ + AA + + RLL+ SQ
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQL-PLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+IG SG I+ +R + A + +++ + P A + D +V ISG+ +V AL +
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDASDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 216 QLRENPPRQVISI 228
+ + PR+ I +
Sbjct: 224 IMYKVSPREQIPL 236
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 102/178 (57%), Gaps = 17/178 (9%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII--ISSK 102
++++ + ++I S +IG+VIGK G I+ IR+ + + I++ D+ H++ +I +++
Sbjct: 312 SRSEKLAIKVICASSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D++ S A A+ L+L++ ++ + KV ++LL++ GC+IG SG
Sbjct: 372 SPDDLKSMAVEAV-----LLLQEKINDEDEDKVK--------MQLLVSSKVIGCIIGKSG 418
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
I ++R + A I I N P SA +D +V+ISG+V V +AL++I +LR++
Sbjct: 419 SIISEIRKRTKADIHISKGNNTP--KSADPNDELVEISGEVSNVRDALIQIVLRLRDD 474
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I + VG ++GR G N+ IR SGAMI++ K R G+++Q A+
Sbjct: 575 TMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAE 634
Query: 313 QRVDEYIYS 321
+I S
Sbjct: 635 NLFQAFIMS 643
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
I+++ A S+ G +IG G I+ +R +SG+ I ++ + H+ D V+ ++
Sbjct: 319 IKVICASSKIGRVIGKGGLTIKGIRQASGSHI------EVNDSRTNHDDDCVITVTA--- 369
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
E + L+ + A+ Q + D V ++L+S ++G
Sbjct: 370 ------TESPDDLK------------SMAVEAVLLLQEKINDEDEDKVKMQLLVSSKVIG 411
Query: 265 GLIGRCGSNISRIRNESGAMIKVYGGKGEQK 295
+IG+ GS IS IR + A I + G K
Sbjct: 412 CIIGKSGSIISEIRKRTKADIHISKGNNTPK 442
>gi|390478281|ref|XP_002761548.2| PREDICTED: poly(rC)-binding protein 3 [Callithrix jacchus]
Length = 393
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 98 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 157 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 204
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I N C
Sbjct: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN----CP--- 87
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 88 --ERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 129
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 167
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 317 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 376
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 377 YLINARLTSEV 387
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 320 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 366
>gi|56566054|gb|AAV98363.1| poly(rC) binding protein 3 [Homo sapiens]
Length = 361
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 285 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 344
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 345 YLINARLTSEV 355
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 334
>gi|432112571|gb|ELK35287.1| Poly(rC)-binding protein 2 [Myotis davidii]
Length = 453
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 100/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ I SGA IK+ R + GSA
Sbjct: 268 SAQTTSHELTIPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPVEGSTDRQVTITGSAAS 327
Query: 308 VALAKQRVD 316
++LA+ ++
Sbjct: 328 ISLAQYLIN 336
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +I + + A IKIA+ + +R + I+
Sbjct: 267 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPVEGSTDRQVTIT 322
>gi|345309017|ref|XP_001516066.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Ornithorhynchus anatinus]
Length = 679
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 135/324 (41%), Gaps = 74/324 (22%)
Query: 21 PRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK 80
P+ G RE G+ GS + K D RI+VP++ +G +IGKEG I+ + ++T+
Sbjct: 245 PQRTRRGGHSREQGQYPGSS--TQPKPLDFPLRILVPTQFVGAIIGKEGLTIKNLTKQTQ 302
Query: 81 ATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
+ + I + E+ + I ++ + + A + I ++ K+ D A ++
Sbjct: 303 SKVDIHRKENAGAAEKPITIHATPEGSS------EACRLILEIMQKEADETKSAEEIP-- 354
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
+++L S G LIG G+N++K+ +G I I L + + +R +
Sbjct: 355 ------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDL----TIYNPERTIT 404
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI--------------- 237
+ G + A NA VEI +LRE V++++ P N SA+
Sbjct: 405 VKGSIEACSNAEVEIMKKLREAYENDVVAVNQQANLIPGLNLSALGIFSTGLSMLPSTAG 464
Query: 238 -------RPAQPFVEPTSADYVT----------------------FEMLISESLVGGLIG 268
P PF + + Y++ + I VG +IG
Sbjct: 465 PHGATAASPYNPFA--SHSPYLSGLYGASRVGAFPHQHSVPEQEVVNLFIPTQAVGAIIG 522
Query: 269 RCGSNISRIRNESGAMIKVYGGKG 292
+ G +I ++ +GA IK+ +G
Sbjct: 523 KKGQHIKQLARFAGASIKIAPAEG 546
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G+ P + + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 494 GAFPHQHSVPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDASERM 553
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 554 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIK-------VPSSAAGR 601
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 602 VIGKGGKTVNELQNLTSAEVIV 623
>gi|7671433|emb|CAB89374.1| putative protein [Arabidopsis thaliana]
Length = 567
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 10/184 (5%)
Query: 74 KIREETKATIKIADAIARHEERVIIISS-KDNDNVVSDAENALQQIAALILKDDDSNSEA 132
K R T A+I + D +ER++ I++ + ++ S+++ AL L+ + N+ A
Sbjct: 332 KTRSVTDASISVGDRHPDCDERLVTITAFEKTKDITSESQRAL----VLVFSNMYENATA 387
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+ +G ++ T RL++ +Q CL+G G+ ++ +GA I +L Q P C S E
Sbjct: 388 KVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVS--E 445
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY--NYSAIRPAQPFVEPTSAD 250
+++VVQISG+ P V A+ ++ + LRE+ Q Y NYS P PT+
Sbjct: 446 NNQVVQISGEFPNVREAINQVTSMLREDLINQSFQRGSQYAVNYSE-DPFPELFSPTAGY 504
Query: 251 YVTF 254
TF
Sbjct: 505 TPTF 508
>gi|194222666|ref|XP_001498933.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Equus caballus]
Length = 620
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 142/338 (42%), Gaps = 71/338 (21%)
Query: 6 EITVNPTVSVVTEPEPRHDVSGKRR-REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKV 64
+I+ P V + P P+ G RE G G +A+ D RI+VP++ +G +
Sbjct: 172 KISYIPDEEVSSPPPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAI 229
Query: 65 IGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122
IGKEG I+ I ++T++ + I + E+ V I ++ + + A + I ++
Sbjct: 230 IGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIM 283
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
K+ D A ++ +++L G LIG G+N++K+ + +G I I +
Sbjct: 284 QKEADETKLAEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQ 335
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSA 236
L S + +R + + G V A NA +EI +LRE +++++ P N SA
Sbjct: 336 DL----SIYNPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSA 391
Query: 237 I-----------RPAQPFVEPTSADYVTF------------------------------- 254
+ PA P P + Y F
Sbjct: 392 LGIFSTGLSMLPPPAGPRGVPPAPPYHPFATHSGYFSSLYPPHQFSPFPHHHSYPEQEIV 451
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
+ I VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 452 NLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG 489
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIII 99
P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER++II
Sbjct: 440 PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVII 499
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+ A +I + +++ N + H+ + S AG +IG
Sbjct: 500 TGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIG 547
Query: 160 MSGQNIEKLRNSSGATIVI 178
G+ + +L+N + A +++
Sbjct: 548 KGGKTVNELQNLTSAEVIV 566
>gi|291409711|ref|XP_002721142.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
Length = 362
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 99/179 (55%), Gaps = 21/179 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPLV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++R S+GA + + A + LP + ++R + I+G +++ + I + E+PP+ V
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKHICVVMLESPPKGV 174
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRP-----------LVTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IG G+ I+ I SGA+IK+ R + GSA
Sbjct: 281 SAQTTSHELTIPNDLIGCIIGCQGAKINEICQMSGALIKIANTVEGSTDRQVTITGSAAS 340
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 341 ISLAQYLINVRLSSE 355
>gi|195022402|ref|XP_001985568.1| GH14429 [Drosophila grimshawi]
gi|193899050|gb|EDV97916.1| GH14429 [Drosophila grimshawi]
Length = 362
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 32 EDGEIEGSDPKRRAKAQD----VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
ED GS K +D + R+I+ +++G +IGK+G + + REE+ A I I+D
Sbjct: 2 EDNNTSGSASGAPIKLEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD 61
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIR 146
ER++ VS +A+ LI K ++ S+ + V IR
Sbjct: 62 --GSCPERIV---------TVSGTTSAIFAAFTLITKKFEEWCSQFNDVGKVGKTQIPIR 110
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
L++ SQ G LIG SG I+++R ++G +I + A LP + ++R V +SG +
Sbjct: 111 LIVPASQCGSLIGKSGSKIKEIRQNTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQI 164
Query: 207 LNALVEIGNQLRENPPR 223
+ +I + E+PPR
Sbjct: 165 TQCIYQICLVMLESPPR 181
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALA 311
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VALA
Sbjct: 269 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 328
Query: 312 KQRVDEYI 319
+ ++ I
Sbjct: 329 QYLINMRI 336
>gi|302692864|ref|XP_003036111.1| hypothetical protein SCHCODRAFT_74754 [Schizophyllum commune H4-8]
gi|300109807|gb|EFJ01209.1| hypothetical protein SCHCODRAFT_74754 [Schizophyllum commune H4-8]
Length = 282
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 138/299 (46%), Gaps = 43/299 (14%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R ++ ++ +IG+ G + +IRE++ A + ++++I + ER++ NV
Sbjct: 4 MRCLIVTQDASIIIGRAGAHVNEIREKSGARVVVSESIPGNPERIL--------NVSGPL 55
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + ++ + +D + + A TI+ +I S+ G +IG G I++++++
Sbjct: 56 DAVSKAFGLIVRRINDEPFDVPSLPGSR--AVTIKFMIPNSRMGSVIGKGGSKIKEIQDA 113
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
SGA + + LP ++RV+ ++G A+ A +GN L E R P+
Sbjct: 114 SGARLN-ASEGMLP-----GSTERVLSVAGVADAIHIATYYVGNILIEAQERM-----PS 162
Query: 232 YNYSAIRPAQPFVEP-TSADYV------TFEMLISESLVGGLIGRCGSNISRIRNESGAM 284
++ RP P P T+A Y T ++ I LVG +IG+ GS I+ IR+ S +
Sbjct: 163 TANASYRPGNPTRRPITNAPYPGSTYVQTQQIYIPNDLVGCIIGKGGSKINEIRHMSASQ 222
Query: 285 IKVY-----------GGKGEQKHRHIQFGGSAQQVALAKQ----RVDEYIYSQLIQQAG 328
IK+ G G + R + G + +A Q R+++ QL Q+G
Sbjct: 223 IKIMEPGAVATGMPAGAAGSEGERLVVITGQPANIQMAVQMLYHRLEQEKQKQLRNQSG 281
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 21/191 (10%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERV- 96
S P RA V + ++P+ ++G VIGK G +I++I++ + A + ++ + ERV
Sbjct: 78 SLPGSRA----VTIKFMIPNSRMGSVIGKGGSKIKEIQDASGARLNASEGMLPGSTERVL 133
Query: 97 --------IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVA--AGHVAANTIR 146
I I++ N++ +A+ + A + + A G T +
Sbjct: 134 SVAGVADAIHIATYYVGNILIEAQERMPSTANASYRPGNPTRRPITNAPYPGSTYVQTQQ 193
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ----LPLCASAHESDRVVQISGD 202
+ I GC+IG G I ++R+ S + I I+ P +P A+ E +R+V I+G
Sbjct: 194 IYIPNDLVGCIIGKGGSKINEIRHMSASQIKIMEPGAVATGMPAGAAGSEGERLVVITGQ 253
Query: 203 VPAVLNALVEI 213
PA + V++
Sbjct: 254 -PANIQMAVQM 263
>gi|392884376|gb|AFM91020.1| poly(rC) binding protein 3, isoform CRAb [Callorhinchus milii]
Length = 349
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 40 DPKRRAKAQDVLF--RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
DPK +V R+++ +++G +IGK+G ++K+R E+ A I I++ ER++
Sbjct: 2 DPKVTEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMRVESGARINISEG--NCPERIV 59
Query: 98 IISSKDNDNVVSDAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
I+ +DA + A + K ++D N+ + A T+RL++ SQ G
Sbjct: 60 TITGP------TDA--IFKAFAMIAFKFEEDINNSMTNSPATSKPPVTLRLVVPASQCGS 111
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG G I+++R S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 112 LIGKGGSKIKEIRESTGAQVQV-AGDMLP-----NSTERAVTISGMPDAIIQCVKQICVV 165
Query: 217 LRENPPR 223
+ E+PP+
Sbjct: 166 MLESPPK 172
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I + + +R+V I+G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGETVKKMRVESGARINI---------SEGNCPERIVTITGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I + E+ ++ SPA TS VT +++ S
Sbjct: 66 DAIFKAFAMIAFKFEED-INNSMTNSPA---------------TSKPPVTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I IR +GA ++V G
Sbjct: 110 GSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I GS ++LA+
Sbjct: 273 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSTERQITITGSPANISLAQ 332
Query: 313 QRVDEYIYSQL 323
++ + S++
Sbjct: 333 YLINARLTSEV 343
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 22 RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKA 81
R + K E+ E G D A Q + +P+ IG +IG++G +I +IR+ + A
Sbjct: 248 RGKMELKNCNEESENWGMD----ANPQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGA 303
Query: 82 TIKIADAIARHEERVIIIS 100
IKIA+A ER I I+
Sbjct: 304 QIKIANATEGSTERQITIT 322
>gi|327263852|ref|XP_003216731.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Anolis
carolinensis]
Length = 360
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + ++ RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTASSRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 279 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 338
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 339 ISLAQYLINVRLSSE 353
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E G G D A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 269 EKGYWAGLD----ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 324
Query: 92 HEERVIIIS 100
+R + I+
Sbjct: 325 STDRQVTIT 333
>gi|387017714|gb|AFJ50975.1| Poly(rC)-binding protein 2-like [Crotalus adamanteus]
Length = 347
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + ++ RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTASSRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 266 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 325
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 326 ISLAQYLINVRLSSE 340
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 265 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 320
>gi|47209955|emb|CAF90944.1| unnamed protein product [Tetraodon nigroviridis]
Length = 164
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 19/167 (11%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G ++KIREE+ A I I++ ER++ I+ A A+ +
Sbjct: 6 QEVGSIIGKKGETVKKIREESGARINISEG--SSPERIVTITG---------ATEAIFRT 54
Query: 119 AALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
A+I + ++D N+ S T+RL+ GSQ G LIG G I+++R ++GA +
Sbjct: 55 FAMIAQKFEEDINAAMSNSNVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKEIRETTGAQV 114
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ A + LP ++R V ISG A+ + I + + E+PP+
Sbjct: 115 QV-AGDMLP-----DSTERAVTISGTPQAITQCVRHICSVMLESPPK 155
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
+ G +IG G+ ++K+R SGA I I + +R+V I+G A+
Sbjct: 7 EVGSIIGKKGETVKKIREESGARINI---------SEGSSPERIVTITGATEAIFRTFAM 57
Query: 213 IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGS 272
I + E+ I+ A + S + TS VT ++ S G LIG+ GS
Sbjct: 58 IAQKFEED-------INAAMSNSNV---------TSKPPVTLRLVFPGSQCGSLIGKGGS 101
Query: 273 NISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVA 309
I IR +GA ++V G + R + G+ Q +
Sbjct: 102 KIKEIRETTGAQVQVAGDMLPDSTERAVTISGTPQAIT 139
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++ P Q G +IGK G +I++IRE T A +++A D + ER + IS
Sbjct: 81 VTLRLVFPGSQCGSLIGKGGSKIKEIRETTGAQVQVAGDMLPDSTERAVTIS 132
>gi|402886179|ref|XP_003906515.1| PREDICTED: poly(rC)-binding protein 2 [Papio anubis]
Length = 340
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 140/334 (41%), Gaps = 75/334 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPT------ 65
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
NA+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 66 ---NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATI-----VILAP---NQLP-----------------LCASAHESDRVVQISG 201
++R + A + + +P +Q P + A + S
Sbjct: 122 EIREVTEAALKPYLFLFFSPLTLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSA 181
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAY---------------------------NY 234
P ++ N E PP + +I Y +
Sbjct: 182 SFPHTTPSMCL--NPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGF 239
Query: 235 SAIRPAQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
S I + P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 240 SGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA 299
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 300 NPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 333
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 248 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 307
Query: 95 RVIIIS 100
R + I+
Sbjct: 308 RQVTIT 313
>gi|297792661|ref|XP_002864215.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
gi|297310050|gb|EFH40474.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
Length = 652
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 102/198 (51%), Gaps = 30/198 (15%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD-ND 105
++++F+I+ P+ +I +V+G+ + ++ E ++++D + +E++I ISS++ D
Sbjct: 322 TEELVFQILCPADKIVRVVGESQGILDLLQNEIGVDVRVSDPVTGSDEQIITISSEEAPD 381
Query: 106 NVVSDAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
+ A+ AL I I L D D+ T RLL++ + CL G +G
Sbjct: 382 DPFFPAQEALLHIQTQIIDLLPDKDN-------------LITTRLLVSSRDSVCLEGKAG 428
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR---- 218
++ ++ +G ++ ILA ++P CAS + D V+QI+GD+ A +ALVE+ LR
Sbjct: 429 -SVSEISRLTGTSVQILAREEIPRCASIN--DVVIQITGDIRAARDALVELTLLLRSHMF 485
Query: 219 ------ENPPRQVISISP 230
E PP + P
Sbjct: 486 KELSQKETPPASTSTTGP 503
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 121/292 (41%), Gaps = 58/292 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
+RI+ + G VIGK G I+ IR+ T A I + + + ER+I IS +D D
Sbjct: 71 YRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDVERIIEISDNRRRDPDGRM 130
Query: 107 -VVSDAENALQQIAALILKDD---------DSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
S A+ AL + IL+ + E RL+++ GC
Sbjct: 131 PSFSPAQEALFNVHDRILESEPQFGYGGAQPEEEEDYGGVRPGGGRVVTRLVVSRMHVGC 190
Query: 157 LIGMSGQNIEKLRNSSGATIVILA-PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQI G++ AV NAL+ + +
Sbjct: 191 LLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSL--SEEIVQIVGELSAVKNALLIVSS 248
Query: 216 QLRE--------------NPPRQVISISPAY--------------------------NYS 235
+LRE +P RQ + Y NY+
Sbjct: 249 RLRESQHRDRSNFQGRSHSPERQFAAAGDDYIPQRRQSSDRFPRGNYRNNNFSSRQSNYA 308
Query: 236 AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
PA P E + + F++L + ++G + ++NE G ++V
Sbjct: 309 EEAPAVPVGENVYTEELVFQILCPADKIVRVVGESQGILDLLQNEIGVDVRV 360
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 53/181 (29%)
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
SK +A T R+L ++AG +IG SG I+ +R +GA I + HE
Sbjct: 59 SKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWI------------NVHE 106
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA-----------------YNYS 235
VP + ++EI + R +P ++ S SPA + Y
Sbjct: 107 L---------VPGDVERIIEISDNRRRDPDGRMPSFSPAQEALFNVHDRILESEPQFGYG 157
Query: 236 AIRPAQPFVEPTSADYVTF---------EMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
+P + DY +++S VG L+G+ G I ++R E+ I+
Sbjct: 158 GAQPEE------EEDYGGVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIR 211
Query: 287 V 287
+
Sbjct: 212 I 212
>gi|448533092|ref|XP_003870552.1| hypothetical protein CORT_0F01960 [Candida orthopsilosis Co 90-125]
gi|380354907|emb|CCG24423.1| hypothetical protein CORT_0F01960 [Candida orthopsilosis]
Length = 384
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 33/270 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG+ G I IREET I+ IA ER++ +S K + D
Sbjct: 120 YRVLVSAKEAGCLIGQNGKVIDSIREETNTKAGISRLIAGTHERILTVSGK-----LDDC 174
Query: 112 ENALQQIAALILKDDDSN------SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
AL A +L + S +RLLI SQ G LIG G I
Sbjct: 175 AKALSYFAQALLGSSIETYNYFPLKQLSSTPCVEHETTILRLLIPNSQMGTLIGARGARI 234
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++++++ A +I + + LP ++R+V++ G V + +AL ++
Sbjct: 235 QQIQHNF-AISMIASKSFLP-----GSNERLVELQGTVDDLYDAL-------------RI 275
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADYV---TFEMLISESLVGGLIGRCGSNISRIRNESG 282
IS ++S+ + P S T + +VG LIG+ GS I +R SG
Sbjct: 276 ISRCLIEDFSSSVGTTTYYVPKSHQLTRKSTATISFPNDMVGALIGKNGSRIQGVRKVSG 335
Query: 283 AMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
AMI + R G+ Q V AK
Sbjct: 336 AMIGIGEAVEGSDERVFTITGTQQAVEKAK 365
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK-ATIKIADAIARHEERVIIISSKDNDN 106
+ + R+++P+ Q+G +IG G RIQ+I+ + I + ER++ +
Sbjct: 210 ETTILRLLIPNSQMGTLIGARGARIQQIQHNFAISMIASKSFLPGSNERLVEL-----QG 264
Query: 107 VVSDAENALQQIAALILKDDDSN--SEASKVAAGH--VAANTIRLLIAGSQAGCLIGMSG 162
V D +AL+ I+ +++D S+ + V H +T + G LIG +G
Sbjct: 265 TVDDLYDALRIISRCLIEDFSSSVGTTTYYVPKSHQLTRKSTATISFPNDMVGALIGKNG 324
Query: 163 QNIEKLRNSSGATIVI 178
I+ +R SGA I I
Sbjct: 325 SRIQGVRKVSGAMIGI 340
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
PK + I P+ +G +IGK G RIQ +R+ + A I I +A+ +ERV I+
Sbjct: 296 PKSHQLTRKSTATISFPNDMVGALIGKNGSRIQGVRKVSGAMIGIGEAVEGSDERVFTIT 355
>gi|431893776|gb|ELK03594.1| Poly(rC)-binding protein 3 [Pteropus alecto]
Length = 339
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+R+E+ A I I++ ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMRDESGARINISE--GNCPERIVTITGP------T 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 66 DAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 125 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 26/158 (16%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
SKV+ G + TIRLL+ G + G +IG G+ ++K+R+ SGA I I + +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMRDESGARINI---------SEGN 53
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY 251
+R+V I+G A+ A I + E+ N + PA TS
Sbjct: 54 CPERIVTITGPTDAIFKAFAMIAYKFEED----------IINSMSNSPA------TSKPP 97
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 135
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 119/276 (43%), Gaps = 42/276 (15%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 156
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 157 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQ-------- 200
Query: 169 RNSSGATIVILAPNQLP-LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
I P+QL L A + + PA P + +S
Sbjct: 201 -------YAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAF---------------PGEKLS 238
Query: 228 ISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ + + QP S T E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 239 LHSSEEAQNLM-GQPSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 297
Query: 288 YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
R I G+ ++LA+ ++ + S++
Sbjct: 298 ANATEGSSERQITITGTPANISLAQYLINARLTSEV 333
>gi|348519763|ref|XP_003447399.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 4 [Oreochromis niloticus]
Length = 584
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 121/272 (44%), Gaps = 46/272 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R + D R++VP++ +G +IGKEG+ I+ + ++T++ + I + E+ + I S+
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDIHRKENAGAAEKPITIHST 252
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A + I ++ K+ + + +++L S G LIG
Sbjct: 253 PEG------CSAACRMILDIMQKEANETKTTEDIP--------LKILAHNSLVGRLIGKE 298
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I + L + + +R + + G + A A VEI +LRE
Sbjct: 299 GRNLKKIEEDTGTKITISSLQDL----TIYNPERTITVKGSIDACCKAEVEITKKLREAY 354
Query: 222 PRQVISIS------PAYNYSA--------------------IRPAQPFVEPTSADYVTFE 255
+ +I+ P N +A I P+ P + ++ +
Sbjct: 355 ENDIAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGPPTRIPPSSPEMSQSAPEQEVVY 414
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I VG LIG+ G +I ++ + +GA IK+
Sbjct: 415 LFIPTQAVGALIGKKGQHIKQLAHFAGASIKI 446
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 21/159 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKD 103
A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 407 APEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG-- 463
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+A+ Q LK+++ S +V + + S AG +IG G+
Sbjct: 464 ----TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKGGK 513
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISG 201
+ +L+N + A +++ P + E+D V V+ISG
Sbjct: 514 TVNELQNLTSAEVIV------PRDQTPDENDEVFVKISG 546
>gi|291221774|ref|XP_002730893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Saccoglossus kowalevskii]
Length = 437
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 41/218 (18%)
Query: 27 GKRRREDGEIEGSDPKRRAKA----QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
G +R D EI S +R K V RI++ S+ G +IGK G+ I ++R + AT
Sbjct: 21 GNKRPADEEIGNSQSSKRTKGGGDGPKVDLRILLQSKNAGAIIGKGGNNIHRLRTQYNAT 80
Query: 83 IKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--------LKDDDSNSEASK 134
+ + D ER++ V ++ E AL + +I KD D + E
Sbjct: 81 VTVPDCSG--PERIL--------TVTTNQETALSCLLDVIPVLEEYQQYKDLDFDCE--- 127
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
+R+L+ SQAG +IG +G I++LR +GA I + + +C ++ E
Sbjct: 128 ----------MRMLVHQSQAGAIIGRAGFKIKELREQTGANIKVYS----EVCPNSTE-- 171
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY 232
RVVQ++G V+N + I + L + P + + + Y
Sbjct: 172 RVVQMNGSPEVVINCMRMILDVLNQTPIKGPVQLYDPY 209
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 129 NSEASK--VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
NS++SK G +R+L+ AG +IG G NI +LR AT+ + P
Sbjct: 32 NSQSSKRTKGGGDGPKVDLRILLQSKNAGAIIGKGGNNIHRLRTQYNATVTV------PD 85
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEP 246
C+ +R++ ++ + L+ L+++ L E + +
Sbjct: 86 CSGP---ERILTVTTNQETALSCLLDVIPVLEE-----------------------YQQY 119
Query: 247 TSADY-VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
D+ ML+ +S G +IGR G I +R ++GA IKVY
Sbjct: 120 KDLDFDCEMRMLVHQSQAGAIIGRAGFKIKELREQTGANIKVY 162
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
+Q ++ +P G +IGK G RI +IRE++ A IKI + + +R+I I
Sbjct: 352 SQFTTTQVTIPKDLAGSIIGKGGSRIGQIREDSGALIKIDEPLPGSNDRIITI 404
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
++ + T ++ I + L G +IG+ GS I +IR +SGA+IK+ R I G+ +Q
Sbjct: 351 TSQFTTTQVTIPKDLAGSIIGKGGSRIGQIREDSGALIKIDEPLPGSNDRIITIKGTPEQ 410
Query: 308 VALAK 312
+ A+
Sbjct: 411 IQNAQ 415
>gi|146197849|dbj|BAF57636.1| hnRNP K protein [Dugesia japonica]
Length = 337
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 138/343 (40%), Gaps = 68/343 (19%)
Query: 33 DGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
D E S R K+Q + R ++PS+ G VIGK G I+ +R A I I+D
Sbjct: 2 DSSNESSGHSRSKKSQPCIELRFLIPSKAAGSVIGKSGENIRNLRRMFMARINISDNSG- 60
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
ER++ + + D D ++ L+++ I + + + + HV +R+L+
Sbjct: 61 -PERILSLEA-DLDTILEILTQCLEKMEGCIPLPRAGSGDCND-SINHV---DLRMLVNQ 114
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
S G LIG G I LR ++ + P +DR+VQ+ G +P V++ +
Sbjct: 115 SLVGALIGRGGGRINDLREKCDLRVLKVYQTVCP-----DSTDRIVQLVGAIPLVIDCIG 169
Query: 212 EIGNQLRENPPRQVISISPAYNY-------------SAIRP-----------AQPFVEPT 247
+I + +E P R+ A NY +AIRP ++P
Sbjct: 170 KIVDMCKETPVREPKVNYDAQNYDHAAANHYGGWAQNAIRPNNNLTTRSLGFSRPGFLKH 229
Query: 248 SADY-----------------VTF--------------EMLISESLVGGLIGRCGSNISR 276
A Y +F E+ + +VG +IG GS I +
Sbjct: 230 QASYKNEHYDYSYPNNYREMDTSFRNSHYDEQDNNEVQEIRLPHKVVGAIIGPGGSRIQQ 289
Query: 277 IRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
+R +SGA I + + R + G+ Q V A ++E +
Sbjct: 290 VRMDSGAHITISSPDRNPQERVVTISGNTQDVKRAFSMINECL 332
>gi|242021846|ref|XP_002431354.1| polyrC binding protein, putative [Pediculus humanus corporis]
gi|212516622|gb|EEB18616.1| polyrC binding protein, putative [Pediculus humanus corporis]
Length = 234
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 22/178 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ V+
Sbjct: 15 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIV---------TVT 63
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGMSGQNI 165
NA+ + +LI K + E + G + T+RL++ SQ G LIG G I
Sbjct: 64 GPTNAIFKAFSLICKKFEEFQEL-QSGGGSMGIPKPPITLRLIVPASQCGSLIGKGGSKI 122
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+++R +GA+I + A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 123 KEIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 174
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 24/144 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRL++ G + G +IG G+ +++ R SGA I I + +R+V ++G
Sbjct: 16 TIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINI---------SDGSCPERIVTVTGPT 66
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I + E Q + S P P +T +++ S
Sbjct: 67 NAIFKAFSLICKKFEEFQELQ------SGGGSMGIPKPP---------ITLRLIVPASQC 111
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ GS I IR +GA I+V
Sbjct: 112 GSLIGKGGSKIKEIREVTGASIQV 135
>gi|396578134|ref|NP_001257528.1| insulin-like growth factor 2 mRNA-binding protein 2 isoform 2
[Rattus norvegicus]
Length = 524
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 139/329 (42%), Gaps = 79/329 (24%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
++ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 92 LSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 144
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 145 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 198
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 199 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 246
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI---------- 237
+R + + G + A +A +EI +LRE +++++ P N SA+
Sbjct: 247 ERTITVKGTIEACASAEMEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVL 306
Query: 238 ------------RPAQPFVEPTSADYV----------------------TFEMLISESLV 263
P PF T + Y T + I V
Sbjct: 307 PPPAGPRGAPPSPPYHPFA--THSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAV 364
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKG 292
G +IG+ G++I ++ +GA IK+ +G
Sbjct: 365 GAIIGKKGAHIKQLARFAGASIKIAPAEG 393
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 357 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 411
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 412 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 464
Query: 173 GATIVI 178
A +++
Sbjct: 465 SAEVIV 470
>gi|326935820|ref|XP_003213964.1| PREDICTED: poly(rC)-binding protein 4-like, partial [Meleagris
gallopavo]
Length = 232
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 19/185 (10%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ + + R+++ ++IG +IGK+G +++IRE++ A I I++ ER+
Sbjct: 8 SGPREPQLSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEGSC--PERITT 65
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
I+ +DA + A L++D + AAG T+RL+I SQ G LI
Sbjct: 66 ITGS------TDAVFRAVSMIAFKLEEDLGDG----TAAGRTPV-TLRLVIPASQCGSLI 114
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G +G I ++R SSGA + + A + LP + ++R V +SG ++ + +I +
Sbjct: 115 GKAGTKIREIRESSGAQVQV-AGDLLP-----NSTERAVTVSGVPDTIIQCVRQICAVIL 168
Query: 219 ENPPR 223
E+PP+
Sbjct: 169 ESPPK 173
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 33/148 (22%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 20 TLRMLMHGKEIGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 70
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY--VTFEMLISES 261
AV A+ I +L E+ + T+A VT ++I S
Sbjct: 71 DAVFRAVSMIAFKLEED----------------------LGDGTAAGRTPVTLRLVIPAS 108
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR SGA ++V G
Sbjct: 109 QCGSLIGKAGTKIREIRESSGAQVQVAG 136
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIAR 91
DG G P V R+++P+ Q G +IGK G +I++IRE + A +++A D +
Sbjct: 90 DGTAAGRTP--------VTLRLVIPASQCGSLIGKAGTKIREIRESSGAQVQVAGDLLPN 141
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKD 125
ER + +S D ++ ++QI A+IL+
Sbjct: 142 STERAVTVSGVP-DTII----QCVRQICAVILES 170
>gi|195440454|ref|XP_002068057.1| GK10610 [Drosophila willistoni]
gi|194164142|gb|EDW79043.1| GK10610 [Drosophila willistoni]
Length = 363
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+ K + + R+I+ +++G +IGK+G + + REE+ A I I+D ER++
Sbjct: 12 GAPIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIV 69
Query: 98 IISSKDNDNVVSDAENALQQIAALILKD-DDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
VS +A+ LI K ++ S+ + V IRL++ SQ G
Sbjct: 70 ---------TVSGTTSAIFSAFTLITKKFEEWCSQFNDVGKVGKTQIPIRLIVPASQCGS 120
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG SG I+++R ++G +I + A LP + ++R V +SG + + +I
Sbjct: 121 LIGKSGSKIKEIRQTTGCSIQV-ASEMLP-----NSTERAVTLSGSAEQITQCIYQICLV 174
Query: 217 LRENPPR 223
+ E+PPR
Sbjct: 175 MLESPPR 181
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGSAQQVALA 311
EM +S L+G +IG+ G+ I+ IR SGAMI++ +G R I G+ VALA
Sbjct: 270 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 329
Query: 312 KQRVDEYI 319
+ ++ I
Sbjct: 330 QYLINMRI 337
>gi|212723602|ref|NP_001132277.1| uncharacterized protein LOC100193713 [Zea mays]
gi|194693942|gb|ACF81055.1| unknown [Zea mays]
Length = 510
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIISS 101
+ ++ RI+ S IG VIGK G ++++ ++T A IK+ DA ER+IIISS
Sbjct: 29 ETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASG---ERLIIISS 85
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ AE I ALIL D ++ + K ++ RL++ S+ GC+IG
Sbjct: 86 NE-----IPAEPISPAIEALILLHDKVSAPSEK------HHSSTRLVVPSSKVGCIIGEG 134
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ I +R +GA I + + P S D +VQ++G AL EI ++LR
Sbjct: 135 GKVITDMRRRTGAEIRVYSKADKPKYLSF--DDELVQVAGPPTIARGALTEIASRLR 189
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 40/172 (23%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD- 202
+IR+L A G +IG SG N+ ++ +GA I + ++ AS +R++ IS +
Sbjct: 34 SIRILCASELIGSVIGKSGANVRRVEQQTGARIKV---QEIDKDASG---ERLIIISSNE 87
Query: 203 VPA-----VLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEML 257
+PA + AL+ + +++ P+ + + ++
Sbjct: 88 IPAEPISPAIEALILLHDKV--------------------------SAPSEKHHSSTRLV 121
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVA 309
+ S VG +IG G I+ +R +GA I+VY K +++ F QVA
Sbjct: 122 VPSSKVGCIIGEGGKVITDMRRRTGAEIRVY--SKADKPKYLSFDDELVQVA 171
>gi|396578132|ref|NP_001257527.1| insulin-like growth factor 2 mRNA-binding protein 2 isoform 1
[Rattus norvegicus]
gi|149019899|gb|EDL78047.1| similar to IGF-II mRNA-binding protein 2 (predicted) [Rattus
norvegicus]
Length = 592
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 139/329 (42%), Gaps = 79/329 (24%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
++ P P H R RE G GS +A+ D RI+VP++ +G +IGKEG I+ I
Sbjct: 160 LSSPSPPH-----RAREQGHGPGSS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNI 212
Query: 76 REETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
++T++ + I + E+ V I ++ + + A + I ++ K+ D A
Sbjct: 213 TKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAE 266
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+V +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 267 EVP--------LKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNP 314
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI---------- 237
+R + + G + A +A +EI +LRE +++++ P N SA+
Sbjct: 315 ERTITVKGTIEACASAEMEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVL 374
Query: 238 ------------RPAQPFVEPTSADYV----------------------TFEMLISESLV 263
P PF T + Y T + I V
Sbjct: 375 PPPAGPRGAPPSPPYHPFA--THSGYFSSLYPHHHFGPFPHHHSYPEQETVSLFIPTQAV 432
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKG 292
G +IG+ G++I ++ +GA IK+ +G
Sbjct: 433 GAIIGKKGAHIKQLARFAGASIKIAPAEG 461
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 425 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 479
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 480 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 532
Query: 173 GATIVI 178
A +++
Sbjct: 533 SAEVIV 538
>gi|363746094|ref|XP_003643523.1| PREDICTED: poly(rC)-binding protein 4-like, partial [Gallus gallus]
Length = 239
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
S P+ + + R+++ ++IG +IGK+G +++IRE++ A I I++ ER+
Sbjct: 8 SGPREPQLSITLTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEG--SCPERITT 65
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
I+ +DA + A L++D + AAG T+RL+I SQ G LI
Sbjct: 66 ITGS------TDAVFRAVSMIAFKLEEDLGDG----TAAGRTPV-TLRLVIPASQCGSLI 114
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G +G I ++R SSGA + + A + LP + ++R V +SG ++ + +I +
Sbjct: 115 GKAGTKIREIRESSGAQVQV-AGDLLP-----NSTERAVTVSGVPDTIIQCVRQICAVIL 168
Query: 219 ENPPR-QVISISPAYNYSAI 237
E+PP+ I P + I
Sbjct: 169 ESPPKGATIPYHPGLSLGTI 188
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 33/148 (22%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 20 TLRMLMHGKEIGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 70
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY--VTFEMLISES 261
AV A+ I +L E+ + T+A VT ++I S
Sbjct: 71 DAVFRAVSMIAFKLEED----------------------LGDGTAAGRTPVTLRLVIPAS 108
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR SGA ++V G
Sbjct: 109 QCGSLIGKAGTKIREIRESSGAQVQVAG 136
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIAR 91
DG G P V R+++P+ Q G +IGK G +I++IRE + A +++A D +
Sbjct: 90 DGTAAGRTP--------VTLRLVIPASQCGSLIGKAGTKIREIRESSGAQVQVAGDLLPN 141
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKD 125
ER + +S D ++ ++QI A+IL+
Sbjct: 142 STERAVTVSGVP-DTII----QCVRQICAVILES 170
>gi|346473549|gb|AEO36619.1| hypothetical protein [Amblyomma maculatum]
Length = 320
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 39/261 (14%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
R D E P+ + V R ++ SR G +IGK G I +R+E KA+I + D
Sbjct: 20 RADNEAPNKRPRNSGGGRAVDVRFLLQSRNAGAIIGKGGTNINSLRKEFKASISVPDCPG 79
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIA 150
ER++ ++V+D + + +I K DD + + + +RLL+
Sbjct: 80 --PERIL--------SIVADLDTLGDILLNIIPKLDDFAQHTGQNGG---SESEMRLLMH 126
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
S AGC+IG +G I++LR S+GA I + C + E R+V+++G V++ +
Sbjct: 127 QSHAGCIIGRAGCRIKELRESTGANIKVHG----SCCPGSTE--RIVKVTGSPAVVVDCI 180
Query: 211 VEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTF-----------EMLIS 259
+I + +I ++P + F S +Y F ++
Sbjct: 181 KQICD---------IIGVAPIKGLNKPYDPHNFDPEFSQEYGGFAEGATGGASGGSGSLA 231
Query: 260 ESLVGGLIGRCGSNISRIRNE 280
+G + GR G N++ R+E
Sbjct: 232 GMAMGQIRGRSGGNVAFWRDE 252
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 30/165 (18%)
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
D+++ ++ + + G A + +R L+ AG +IG G NI LR A+I +
Sbjct: 22 DNEAPNKRPRNSGGGRAVD-VRFLLQSRNAGAIIGKGGTNINSLRKEFKASISV------ 74
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFV 244
P C +R++ I D L+ L +I +++I P + A Q
Sbjct: 75 PDCPGP---ERILSIVAD----LDTLGDI-----------LLNIIPKLDDFAQHTGQ--- 113
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+L+ +S G +IGR G I +R +GA IKV+G
Sbjct: 114 --NGGSESEMRLLMHQSHAGCIIGRAGCRIKELRESTGANIKVHG 156
>gi|348519761|ref|XP_003447398.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 3 [Oreochromis niloticus]
Length = 588
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 122/278 (43%), Gaps = 54/278 (19%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R + D R++VP++ +G +IGKEG+ I+ + ++T++ + I + E+ + I S+
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDIHRKENAGAAEKPITIHST 252
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A + I ++ K+ + + +++L S G LIG
Sbjct: 253 PEG------CSAACRMILDIMQKEANETKTTEDIP--------LKILAHNSLVGRLIGKE 298
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I + L + + +R + + G + A A VEI +LRE
Sbjct: 299 GRNLKKIEEDTGTKITISSLQDL----TIYNPERTITVKGSIDACCKAEVEITKKLREAY 354
Query: 222 PRQVISIS------PAYNYSAI----------------RPAQPFVEPTSADYVTF----- 254
+ +I+ P N +A+ R A P V P A Y F
Sbjct: 355 ENDIAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGPRSAVPAVAP--AGYNPFLQQAP 412
Query: 255 -----EMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I VG LIG+ G +I ++ + +GA IK+
Sbjct: 413 EQEVVYLFIPTQAVGALIGKKGQHIKQLAHFAGASIKI 450
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 21/161 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISS 101
++A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 409 QQAPEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG 467
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A+ Q LK+++ S +V + + S AG +IG
Sbjct: 468 ------TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKG 515
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISG 201
G+ + +L+N + A +++ P + E+D V V+ISG
Sbjct: 516 GKTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISG 550
>gi|383862493|ref|XP_003706718.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Megachile
rotundata]
Length = 466
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQSGGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|301786262|ref|XP_002928556.1| PREDICTED: RNA-binding protein Nova-2-like [Ailuropoda melanoleuca]
Length = 329
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 137/299 (45%), Gaps = 39/299 (13%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP-- 204
Query: 224 QVISISPAYNYSAIRPAQPFV--EPTSADYVT------------FEMLISESLVGGLIGR 269
S N S A P PT + Y + E+ + E+LVG ++G+
Sbjct: 205 ---QSSSCLNISYANVAGPVANSNPTGSPYASPADLAAESAKELVEIAVPENLVGAILGK 261
Query: 270 CGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVALAKQRVDEYIYSQLI 324
G + + +GA I++ KGE ++R + GS A + +Y+ SQ +
Sbjct: 262 GGKTLVEYQELTGARIQI-SKKGEFLPGTRNRRVTITGSP-----AATQAAQYLISQRV 314
>gi|213410260|ref|XP_002175900.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces japonicus yFS275]
gi|212003947|gb|EEB09607.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces japonicus yFS275]
Length = 381
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 117/270 (43%), Gaps = 44/270 (16%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q + R ++ +R+ G +IGK G + ++R T I A+ +RV+ IS
Sbjct: 84 QQLTLRALLSTREAGIIIGKSGKNVAELRSTTNVKAGITKAVPNVHDRVLTISGS----- 138
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
EN ++ +I +++ A+ A +RLLIA S G +IG +G I K
Sbjct: 139 ---LENVVRAYRFIIDIFAKNSTNANGTPVDPHAPRKLRLLIAHSLMGSIIGRNGLRI-K 194
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE-------- 219
L + +I + + LP ++R V++ G V + A+ EIG L +
Sbjct: 195 LIQDKCSCRMIASKDMLP-----QSTERTVEVHGTVENLHAAIWEIGKCLIDDWERGAGT 249
Query: 220 ---NP------PRQVISISPAYNYSAIRPA--QPFVEPTSADY-----------VTFEML 257
NP P ++ SP + PA P ++ +A Y +T +
Sbjct: 250 VFYNPVSRLTQPFPTVATSPRAVSQQMTPAIPSPMMDGGAAPYFFPPAAPQQPRITQNIS 309
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I +VG +IGR GS IS IR SG+ I +
Sbjct: 310 IPADMVGCIIGRAGSKISEIRRSSGSKISI 339
>gi|194387672|dbj|BAG61249.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 132/293 (45%), Gaps = 63/293 (21%)
Query: 75 IREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI---LKDDDSNSE 131
+REE+ A I I++ ER+I ++ N A+ + A+I L++D S+S
Sbjct: 1 MREESGARINISEG--NCPERIITLAGPTN---------AIFKAFAMIIDKLEEDISSSM 49
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
+ AA T+RL++ SQ G LIG G I+++R S+GA + + A + LP +
Sbjct: 50 TNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP-----N 102
Query: 192 ESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVI-------SISPA--------- 231
++R + I+G +++ + +I L ++PP+ V S SP
Sbjct: 103 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQLTK 162
Query: 232 -----------------YNYSAIRPAQPFVE-----PTSADYVTFEMLISESLVGGLIGR 269
+S I + P V+ SA + E+ I L+G +IGR
Sbjct: 163 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGR 222
Query: 270 CGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G+ I+ IR SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 223 QGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 275
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 59/209 (28%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISS------- 101
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 60 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 119
Query: 102 ---------------------------KDNDNVVSDAENALQQIAALILKD--------- 125
K + + V A L ++ L ++
Sbjct: 120 CVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGN 179
Query: 126 ------DDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
+ S+ E +A T L I GC+IG G I ++R SGA I
Sbjct: 180 TGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIK 239
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAV 206
I P + +DR V I+G ++
Sbjct: 240 IANPVE-------GSTDRQVTITGSAASI 261
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 185 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 244
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 245 EGSTDRQVTIT 255
>gi|148226696|ref|NP_001080123.1| poly(rC) binding protein 3 [Xenopus laevis]
gi|27370875|gb|AAH41241.1| Pcbp2b protein [Xenopus laevis]
Length = 353
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + ++ +P VT +++ S
Sbjct: 66 NAIFKAFSMIIDKLEED-----ISSSMTNSTASSKPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 272 SAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTAS 331
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 332 ISLAQYLINVRLSSE 346
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 326
>gi|147901405|ref|NP_001084264.1| poly(rC) binding protein 2 [Xenopus laevis]
gi|5459450|emb|CAB50743.1| hnRNP-E2 protein [Xenopus laevis]
Length = 353
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 25/159 (15%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+ S + G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DTSVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+R++ ++G A+ A I ++L E+ IS S + ++ +P
Sbjct: 56 ---ERIITLAGPTNAIFKAFSMIIDKLEED-----ISSSMTNSTASSKPP---------- 97
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ G I IR +GA ++V G
Sbjct: 98 -VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 272 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTAS 331
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 332 ISLAQYLINVRLSSE 346
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 326
>gi|349802451|gb|AEQ16698.1| putative poly(rC)-binding protein 2 isoform g [Pipa carvalhoi]
Length = 207
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 21/186 (11%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RL++ SQ G LIG G I+++R S+GA + + A + LP + ++R + I+G
Sbjct: 17 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP-----NSTERAITIAGIP 70
Query: 204 PAVLNALVEIGNQLRENPPRQVI-------SISP------AYNYSAIRPAQPFVEPTSAD 250
+++ + +I + E+PP+ V S SP AY QP SA
Sbjct: 71 QSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGAYTIQGQAIPQPI--DASAQ 128
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVAL 310
+ E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS ++L
Sbjct: 129 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSTASISL 188
Query: 311 AKQRVD 316
A+ ++
Sbjct: 189 AQYLIN 194
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 42/185 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ +
Sbjct: 16 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSII- 74
Query: 109 SDAENALQQIAALILKDDDSN---------SEASKVAAGHVAANTIR------------- 146
++QI ++L+ S + + AG A TI+
Sbjct: 75 ----ECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAG--GAYTIQGQAIPQPIDASAQ 128
Query: 147 -----LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
L I GC+IG G I ++R SGA I I P + +DR V I+G
Sbjct: 129 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE-------GSTDRQVTITG 181
Query: 202 DVPAV 206
++
Sbjct: 182 STASI 186
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 125 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 180
>gi|53749712|ref|NP_001005451.1| poly(rC) binding protein 3 [Xenopus (Silurana) tropicalis]
gi|49250542|gb|AAH74565.1| poly(rC) binding protein 2 [Xenopus (Silurana) tropicalis]
gi|89266917|emb|CAJ82240.1| novel protein similar to poly(rC) binding protein 2 [Xenopus
(Silurana) tropicalis]
Length = 353
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + ++ +P VT +++ S
Sbjct: 66 NAIFKAFSMIIDKLEED-----ISSSMTNSTASSKPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 272 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTAS 331
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 332 ISLAQYLINVRLSSE 346
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 326
>gi|212542979|ref|XP_002151644.1| KH domain RNA-binding protein [Talaromyces marneffei ATCC 18224]
gi|210066551|gb|EEA20644.1| KH domain RNA-binding protein [Talaromyces marneffei ATCC 18224]
Length = 367
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 138/347 (39%), Gaps = 76/347 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
E GE+E AQ VL R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 29 ESGELEDQPKTEEEYAQAVLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQ 88
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A +V G V N IR
Sbjct: 89 GVHDRVLTVTGG-----LQGCARAYSIVAKGLLEG------APQVGMGGVVQNNGTHPIR 137
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 138 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 191
Query: 207 LNALVEIGNQLRENPPRQVISI--SPAYNYSAIRPAQP---------------------- 242
A+ EIG L ++ R ++ +PA S QP
Sbjct: 192 EKAVWEIGKCLIDDWQRGTGTVLYNPAVRVSVGGSGQPSHNGDRTGGSYGGGRSYNRTGN 251
Query: 243 ---FVEPTSA----------------------DYVTFEMLISESLVGGLIGRCGSNISRI 277
F EP+ + T + I +VG +IGR GS IS I
Sbjct: 252 GADFSEPSGGYNRRGSGDNANRSIPMVTDDGEEVQTQNISIPADMVGCIIGRGGSKISEI 311
Query: 278 RNESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
R SGA I + E R GSAQ A ++ +Y L
Sbjct: 312 RRSSGARISIAKAPHDETGERMFTIMGSAQ----ANEKALYLLYENL 354
>gi|340726176|ref|XP_003401437.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus terrestris]
Length = 466
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKV-AAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G V T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A + LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASDMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|350405177|ref|XP_003487350.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus impatiens]
Length = 466
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKV-AAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G V T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A + LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASDMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|54037961|gb|AAH84195.1| Pcbp2 protein [Xenopus laevis]
Length = 353
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + ++I+ ++D +S + A T+RL++ SQ G LIG G I++
Sbjct: 67 ----AIFKAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+R S+GA + + A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 174
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 25/159 (15%)
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+ S + G TIRLL+ G + G +IG G++++K+R SGA I I N C
Sbjct: 2 DTSVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-- 55
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
+R++ ++G A+ A I ++L E+ IS S + ++ +P
Sbjct: 56 ---ERIITLAGPTNAIFKAFSMIIDKLEED-----ISSSMTNSTASSKPP---------- 97
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ G I IR +GA ++V G
Sbjct: 98 -VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GS
Sbjct: 272 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTAS 331
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 332 ISLAQYLINVRLSSE 346
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 326
>gi|328778258|ref|XP_391921.3| PREDICTED: poly(rC)-binding protein 3-like [Apis mellifera]
Length = 466
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKV-AAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G V T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A + LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASDMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
>gi|397521888|ref|XP_003831016.1| PREDICTED: poly(rC)-binding protein 1 [Pan paniscus]
Length = 455
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 140/348 (40%), Gaps = 86/348 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 113 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 165
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 166 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 221
Query: 168 ---------------LRNSSGATIVILA-PNQLPLCA-----------SAHESDRVVQIS 200
L NS+ I I P + C S RV+ I
Sbjct: 222 IRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIP 281
Query: 201 GDVPAVLNALVEIGNQLR--------------ENPPRQVISI------SP---------- 230
+ ++ G Q R E PP SI SP
Sbjct: 282 YQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVA 341
Query: 231 -----------AYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNI 274
++ I + P V+ A T E+ I +L+G +IGR G+NI
Sbjct: 342 RQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANI 401
Query: 275 SRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
+ IR SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 402 NEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 449
>gi|55742577|ref|NP_998282.1| poly(rC)-binding protein 4 [Danio rerio]
gi|33604078|gb|AAH56323.1| Zgc:65870 [Danio rerio]
gi|41946775|gb|AAH65955.1| Zgc:65870 [Danio rerio]
Length = 442
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IREE+ A I I++ ER+I I+
Sbjct: 7 LRLLMHGKEVGSIIGKKGETVKRIREESSARINISE--GSCPERIITITGA--------T 56
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIEKL 168
E + + +K ++ A+ VA G V + T+RL+I SQ G LIG G I+++
Sbjct: 57 ECVFRAFTMITIKLEE--DLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEI 114
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R +GA + + A + LP + ++R V ISG A++ + I + E+PP+
Sbjct: 115 REKTGAQVQV-AGDLLP-----NSTERGVTISGSQDAIIQCVKLICTVILESPPK 163
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A I I + +R++ I+G
Sbjct: 6 TLRLLMHGKEVGSIIGKKGETVKRIREESSARINI---------SEGSCPERIITITGAT 56
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
V A I +L E+ V N + TS VT ++I S
Sbjct: 57 ECVFRAFTMITIKLEEDLAALV------ANGTV----------TSKPPVTLRLVIPASQC 100
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I IR ++GA ++V G
Sbjct: 101 GSLIGKGGSKIKEIREKTGAQVQVAG 126
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDN 104
V R+++P+ Q G +IGK G +I++IRE+T A +++A D + ER + IS +
Sbjct: 89 VTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISGSQD 144
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 247 TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQ 306
+S+ + E+LI L+G +IGR G+ I+ IR SGA IK+ RH+ GS
Sbjct: 253 SSSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPI 312
Query: 307 QVALAKQRVDEYIYSQLIQQA 327
+ LA +Y+ + ++ A
Sbjct: 313 SINLA-----QYLITSCLETA 328
>gi|383862495|ref|XP_003706719.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Megachile
rotundata]
Length = 560
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQSGGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGS 304
+A+ T EM + L+G +IG+ G+ I+ IR SGAMI++ +G R I G+
Sbjct: 362 AANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGN 421
Query: 305 AQQVALAKQRVD 316
VALA+ +
Sbjct: 422 PDAVALAQYLIS 433
>gi|393220213|gb|EJD05699.1| hypothetical protein FOMMEDRAFT_79532 [Fomitiporia mediterranea
MF3/22]
Length = 281
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 115/236 (48%), Gaps = 18/236 (7%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R ++ ++ +IG+ G + +IRE++ A + ++++I + ER++ NV
Sbjct: 4 MRCLIVTQDASIIIGRAGKHVNEIREKSGARVVVSESIPGNPERIL--------NVSGPL 55
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + ++ + +D + V A TI+ +I S+ G +IG G I++++++
Sbjct: 56 DAVSKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFMIPNSRMGSIIGKQGAKIKEIQDA 113
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
SGA + + LP ++RV+ ++G A+ A +GN L E R S + +
Sbjct: 114 SGARLN-ASEGMLP-----GSTERVLSVAGVADAIHIATYYVGNILIECQERMPSSTNSS 167
Query: 232 YNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
Y S P P A T ++ I LVG +IG+ GS I+ IR+ S + IK+
Sbjct: 168 YRPSNRAPRPPLS--GGAQSYTQQIYIPNDLVGCIIGKGGSKINEIRHMSASQIKI 221
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVI 97
S P RA V + ++P+ ++G +IGK+G +I++I++ + A + ++ + ERV+
Sbjct: 78 SVPGSRA----VTIKFMIPNSRMGSIIGKQGAKIKEIQDASGARLNASEGMLPGSTERVL 133
Query: 98 IISSKDNDNVVSDAEN-ALQQIAALILKDDD------------SNSEASKVAAGHVAANT 144
++ V+DA + A + ++++ + SN +G + T
Sbjct: 134 SVAG------VADAIHIATYYVGNILIECQERMPSSTNSSYRPSNRAPRPPLSGGAQSYT 187
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC----ASAHESDRVVQIS 200
++ I GC+IG G I ++R+ S + I I+ P P A E++R+V I+
Sbjct: 188 QQIYIPNDLVGCIIGKGGSKINEIRHMSASQIKIMEPGVTPPGMSGPAGGTENERLVIIT 247
Query: 201 G 201
G
Sbjct: 248 G 248
>gi|119598616|gb|EAW78210.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_b
[Homo sapiens]
Length = 428
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 31/256 (12%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 336
Query: 209 ALVEIGNQLRENPPRQVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISES 261
A +EI +LRE +++++ Y S++ P PF P Y E + I
Sbjct: 337 AEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPF--PHHHSYPEQEIVNLFIPTQ 394
Query: 262 LVGGLIGRCGSNISRI 277
VG +IG+ G++I ++
Sbjct: 395 AVGAIIGKKGAHIKQL 410
>gi|293332893|ref|NP_001169297.1| uncharacterized protein LOC100383161 [Zea mays]
gi|224028485|gb|ACN33318.1| unknown [Zea mays]
Length = 664
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 91/172 (52%), Gaps = 14/172 (8%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DN 106
+D++FRI+ P+ + ++ ++ ++ + ++++D + +ERV+II+S++ D+
Sbjct: 337 EDIIFRILCPNDKADSLVATRDGILEMLQTDVGVDVRLSDITSDSDERVLIITSREGPDH 396
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ A+ A+ I I+ D + + T RLL+ S+ C G G ++
Sbjct: 397 ELFPAQEAVLHIQTHIV---DLGPDMDNII-------TTRLLVPASEIACFDGREG-SLS 445
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ + A + IL LP C A ESD ++QI G++ A NAL+++ +LR
Sbjct: 446 DIQRQTSANVQILPREDLPSC--ALESDELIQIVGEIKAARNALIQVTTKLR 495
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII---SSKDNDN-- 106
FRI+ P K + K+R+++ A + + A RVI + ++ D
Sbjct: 87 FRILCPE---CKAYSFSPGFVAKVRDDSGALVTVHPPFAGDYVRVIETVDGARREADGCP 143
Query: 107 -VVSDAENALQQIAALILKDDDSNSEASKVA------AGHVAANTIRLLIAGSQAGCLIG 159
+ S A+ AL + IL+ D + + A T RL++ GCL+G
Sbjct: 144 PMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKDARDRGKTTTRLIVPKQHVGCLLG 203
Query: 160 MSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G+ IE++R + I IL+ Q P C S+ S+ VVQ+ GD V A+ I ++L+
Sbjct: 204 KGGKIIEQMRMETKTHIRILSRGQHTPRCVSS--SEEVVQVVGDGNCVKKAVAIITDRLK 261
Query: 219 EN 220
E+
Sbjct: 262 ES 263
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G D + R K R+IVP + +G ++GK G I+++R ETK I+I + +H R
Sbjct: 178 GKDARDRGKTTT---RLIVPKQHVGCLLGKGGKIIEQMRMETKTHIRIL-SRGQHTPRC- 232
Query: 98 IISSKDNDNVVSDAENALQQIAALI 122
+ SS++ VV D N +++ A+I
Sbjct: 233 VSSSEEVVQVVGDG-NCVKKAVAII 256
>gi|332215035|ref|XP_003256642.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 5 [Nomascus leucogenys]
Length = 577
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 135/309 (43%), Gaps = 55/309 (17%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 161 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 218
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 219 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 272
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 273 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 320
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 321 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 380
Query: 238 --------------RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
P PF P + + I VG +IG+ G++I ++ +GA
Sbjct: 381 VLSPPAGPRGAPPAAPYHPFAYP---EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGA 437
Query: 284 MIKVYGGKG 292
IK+ +G
Sbjct: 438 SIKIAPAEG 446
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 410 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 464
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 465 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 517
Query: 173 GATIVI 178
A +++
Sbjct: 518 SAEVIV 523
>gi|432865686|ref|XP_004070563.1| PREDICTED: poly(rC)-binding protein 4-like [Oryzias latipes]
Length = 467
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IREE+ A + I++ ER+I I+ D+V
Sbjct: 29 LRLLMHGKEVGSIIGKKGETVKRIREESSARVNISE--GSCPERIITITG-STDSVF--- 82
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIEKL 168
A I + +D + VA G +++ T+RL+I SQ G LIG G I+++
Sbjct: 83 -RAFTMITYKLEED-----LTALVANGTISSKPPVTLRLVIPASQCGSLIGKGGAKIKEI 136
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
R S+GA I + A + LP + ++R V ISG+ +V+ + I + E+PP+
Sbjct: 137 RESTGAQIQV-AGDLLP-----NSTERGVTISGNQDSVIQCVKLICTVILESPPK 185
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A + I + +R++ I+G
Sbjct: 28 TLRLLMHGKEVGSIIGKKGETVKRIREESSARVNI---------SEGSCPERIITITGST 78
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
+V A I +L E+ ++ I P VT ++I S
Sbjct: 79 DSVFRAFTMITYKLEED-------LTALVANGTISSKPP---------VTLRLVIPASQC 122
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR +GA I+V G
Sbjct: 123 GSLIGKGGAKIKEIRESTGAQIQVAG 148
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A I++A D + ER + IS + D+V+
Sbjct: 111 VTLRLVIPASQCGSLIGKGGAKIKEIRESTGAQIQVAGDLLPNSTERGVTISG-NQDSVI 169
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ I +IL+ + AA LLIAG+Q
Sbjct: 170 ----QCVKLICTVILESPPKGATIPYRPTPSPAA----LLIAGNQ 206
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E+LI L+G +IGR G+ I+ IR SGA IK+ RH+ G+ + LA
Sbjct: 290 ELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDGTSDRHVTITGTPVSINLA--- 346
Query: 315 VDEYIYSQLIQQA 327
+Y+ + ++ A
Sbjct: 347 --QYLITSCLETA 357
>gi|395839825|ref|XP_003792776.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Otolemur garnettii]
Length = 597
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 129/299 (43%), Gaps = 68/299 (22%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+ V I ++
Sbjct: 186 QARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHAT 245
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ D A ++ +++L G LIG
Sbjct: 246 PEGTS------EACRMILEIMQKEADETKLAEEIP--------LKILAHNGLVGRLIGKE 291
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + +G I I + L S + +R + + G V A NA +EI +LRE
Sbjct: 292 GRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACANAEIEIMKKLREAF 347
Query: 222 PRQVISIS------PAYNYSAI-----------RPAQPFVEPTSADYVTF---------- 254
+++++ P N SA+ P+ P P +A Y F
Sbjct: 348 ENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPSGPRGAPPAAPYHPFATHSGYFSSL 407
Query: 255 ---------------------EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
+ I VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 408 YPHHQFSPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG 466
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIII 99
P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER++II
Sbjct: 417 PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVII 476
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+ A +I + +++ N + H+ + S AG +IG
Sbjct: 477 TGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIG 524
Query: 160 MSGQNIEKLRNSSGATIVI 178
G+ + +L+N + A +++
Sbjct: 525 KGGKTVNELQNLTSAEVIV 543
>gi|410899813|ref|XP_003963391.1| PREDICTED: poly(rC)-binding protein 4-like [Takifugu rubripes]
Length = 447
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 21/177 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A + I++ ER+I I+ D V
Sbjct: 16 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARVNISE--GSCPERIITITG-STDCVF- 71
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIE 166
A I + +D A+ VA G ++ T+RL+I SQ G LIG G I+
Sbjct: 72 ---RAFTMITHKLEED-----LAALVANGTISTKPPVTLRLVIPASQCGSLIGKGGAKIK 123
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R S+GA I + A + LP + ++R V ISG+ +V+ + I + E+PP+
Sbjct: 124 EIRESTGAQIQV-AGDLLP-----NSTERGVTISGNQDSVIQCVKLICTVILESPPK 174
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A + I + +R++ I+G
Sbjct: 17 TLRLLMHGKEVGSIIGKKGETVKRIREESSARVNI---------SEGSCPERIITITGST 67
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
V A I ++L E+ V A + +P VT ++I S
Sbjct: 68 DCVFRAFTMITHKLEEDLAALV-----ANGTISTKPP-----------VTLRLVIPASQC 111
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR +GA I+V G
Sbjct: 112 GSLIGKGGAKIKEIRESTGAQIQVAG 137
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A I++A D + ER + IS + D+V+
Sbjct: 100 VTLRLVIPASQCGSLIGKGGAKIKEIRESTGAQIQVAGDLLPNSTERGVTISG-NQDSVI 158
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
++ I +IL+ + + AA +LIAG+Q
Sbjct: 159 ----QCVKLICTVILESPPKGATIPYRPSPSPAA----VLIAGNQ 195
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E+LI L+G +IGR G+ I+ IR SGA IK+ RH+ G+ + LA
Sbjct: 270 ELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDGTSDRHVTITGTPVSINLA--- 326
Query: 315 VDEYIYSQLIQQA 327
+Y+ + ++ A
Sbjct: 327 --QYLITSCLETA 337
>gi|402225510|gb|EJU05571.1| hypothetical protein DACRYDRAFT_20011 [Dacryopinax sp. DJM-731 SS1]
Length = 413
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 33/272 (12%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
D + E D R Q++ R ++ ++ +IGK G + +IRE++ A I ++++I +
Sbjct: 105 DKDEENEDGTREPPPQNIHMRALIVTQDASIIIGKGGSHVNEIREKSGARITVSESIPGN 164
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
ER++ NV + + ++ + +D E V A TI+ +I S
Sbjct: 165 PERIL--------NVTGPLDAVAKAFGLIVRQINDEPFEQPSVPGSR--AVTIKFIIPNS 214
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
+ G LIG +G I++++ +SGA + + LP ++RV+ +SG A+ A
Sbjct: 215 RMGTLIGKAGSKIKEIQEASGAKLH-ASEGLLP-----GSTERVLNVSGVADAIHIATYY 268
Query: 213 IGNQLRENPPRQVISIS-------PAYNYSAIRPAQPFVEPTSADYV----------TFE 255
+GN L + P + + P + + P P T
Sbjct: 269 VGNSLLNSHPSYSSTHASYKQQRRPMASTTYYPPNTPVSNYGYPGPAAAPAPVSLQQTQN 328
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I LVG +IG+ G+ I+ IR+ SG IK+
Sbjct: 329 FYIPNDLVGSIIGKGGAKINEIRHVSGCQIKI 360
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 30/148 (20%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R LI A +IG G ++ ++R SGA I + +P +R++ ++G +
Sbjct: 124 MRALIVTQDASIIIGKGGSHVNEIREKSGARITVS--ESIP-----GNPERILNVTGPLD 176
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT--SADYVTFEMLISESL 262
AV A I Q+ + +PF +P+ + VT + +I S
Sbjct: 177 AVAKAFGLIVRQIND---------------------EPFEQPSVPGSRAVTIKFIIPNSR 215
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGG 290
+G LIG+ GS I I+ SGA + G
Sbjct: 216 MGTLIGKAGSKIKEIQEASGAKLHASEG 243
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 44/192 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-ARHEERVIIISSKDNDNVV 108
V + I+P+ ++G +IGK G +I++I+E + A + ++ + ERV+ +S V
Sbjct: 205 VTIKFIIPNSRMGTLIGKAGSKIKEIQEASGAKLHASEGLLPGSTERVLNVSG------V 258
Query: 109 SDAEN-ALQQIAALILKDDDSNSEA---------SKVAAGHVAANTI------------- 145
+DA + A + +L S S + + NT
Sbjct: 259 ADAIHIATYYVGNSLLNSHPSYSSTHASYKQQRRPMASTTYYPPNTPVSNYGYPGPAAAP 318
Query: 146 ---------RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA-----H 191
I G +IG G I ++R+ SG I IL P Q P S
Sbjct: 319 APVSLQQTQNFYIPNDLVGSIIGKGGAKINEIRHVSGCQIKILEPGQGPAPGSGAVQPMS 378
Query: 192 ESDRVVQISGDV 203
E++R+V I+G +
Sbjct: 379 ETERMVTITGGI 390
>gi|8809595|dbj|BAA97146.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 660
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 28/197 (14%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD-ND 105
+++++F+I+ P+ +I +V+G+ I ++ E ++++D +A +E++I ISS++ D
Sbjct: 322 SEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPD 381
Query: 106 NVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ A+ AL I I L D N T RLL+ + CL G +G
Sbjct: 382 DPFFPAQEALLHIQTQIIDLIPDKDN------------LITTRLLVPSRDSICLEGKAG- 428
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR----- 218
++ ++ +G ++ ILA ++P CAS + D V+QI+G++ A ALVE+ LR
Sbjct: 429 SVSEISRLTGTSVQILAREEIPRCASIN--DVVIQITGEIRAAREALVELTLLLRSHMFK 486
Query: 219 -----ENPPRQVISISP 230
E PP + P
Sbjct: 487 ELSQKETPPASTSTTGP 503
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
+RI+ + G VIGK G I+ IR+ T A I + + + ER+I IS +D D
Sbjct: 70 YRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGRM 129
Query: 107 -VVSDAENALQQIAALILKDD---------DSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
S A+ AL + IL+ + E RL+++ GC
Sbjct: 130 PSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGC 189
Query: 157 LIGMSGQNIEKLRNSSGATIVILA-PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQI G++ AV NAL + +
Sbjct: 190 LLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSL--SEEIVQIVGELNAVKNALAIVSS 247
Query: 216 QLREN 220
+LRE+
Sbjct: 248 RLRES 252
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 53/181 (29%)
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
SK +A T R+L ++AG +IG SG I+ +R +GA I + HE
Sbjct: 58 SKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWI------------NVHE 105
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA-----------------YNYS 235
VP ++EI + R +P ++ S SPA + Y
Sbjct: 106 L---------VPGDAERIIEISDNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYG 156
Query: 236 AIRPAQPFVEPTSADYVTF---------EMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
P + DY +++S VG L+G+ G I ++R E+ I+
Sbjct: 157 GPPPEE------EEDYGGVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIR 210
Query: 287 V 287
+
Sbjct: 211 I 211
>gi|198427864|ref|XP_002125995.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
[Ciona intestinalis]
Length = 402
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 33/208 (15%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103
R + + R+++PS G +IGK G I+ +R+E A +++ D+ ER++ +K
Sbjct: 42 REPSDKIELRVLIPSHTAGAIIGKGGANIRDLRQEFNANVQVPDSHGF--ERIVSAVAK- 98
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ DA N ++ + ++ KV +R+L+ SQAG +IG+ G
Sbjct: 99 ---TIEDAANICGKVVEAL---NERMHHPEKVGC-------LRMLVHKSQAGTIIGLKGS 145
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I++LR +GA I + NQ C + +DRV Q+ G V+ + I L++ PP+
Sbjct: 146 RIKELREMTGANIKV---NQ-ECCPES--TDRVCQVRGTADVVVKCVARILEHLQQAPPK 199
Query: 224 QVISISPAYNYSAIRPAQPFVEPTSADY 251
P NY P S DY
Sbjct: 200 -----GPIKNYD------PNCFDDSYDY 216
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P+ VIGK G RI++IRE++ A I I +A EERVI I+ N+ +A+
Sbjct: 332 QVTIPTSCAASVIGKTGQRIRQIREDSGAVIVIDEAGPGEEERVISITG--NEEQTQNAQ 389
Query: 113 NALQQIA 119
LQ+ A
Sbjct: 390 FLLQKNA 396
>gi|57093423|ref|XP_538537.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Canis lupus
familiaris]
Length = 356
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 139/348 (39%), Gaps = 86/348 (24%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI-- 165
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 166 -------------EKLRNSSGATIVILA-PNQLPLCA-----------SAHESDRVVQIS 200
+ L NS+ I I P + C S RV+ I
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIP 182
Query: 201 GDVPAVLNALVEIGNQLR--------------ENPPRQVISI------SP---------- 230
+ ++ G Q R E PP SI SP
Sbjct: 183 YQPMPASSPVICAGGQDRCGDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVA 242
Query: 231 -----------AYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNI 274
++ I + P V+ A T E+ I +L+G +IGR G+NI
Sbjct: 243 RQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANI 302
Query: 275 SRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
+ IR SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 303 NEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
>gi|328709625|ref|XP_001951678.2| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Acyrthosiphon
pisum]
Length = 411
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 45 AKAQD-----VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
AK++D + R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ I
Sbjct: 3 AKSKDDSNISLTLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD--GSCPERIVTI 60
Query: 100 SSKDNDNVVSDAENALQQIAALILKD-----DDSNSEASKVAAGHVAANTIRLLIAGSQA 154
S + A+ + +LI + N + A G T+RL++ SQ
Sbjct: 61 SG---------STEAIYKAFSLICTKVEEFIEMQNGKTGATAIGKCGM-TLRLIVPASQC 110
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G LIG G I+++R ++GA I + A + LP ++R V ++G ++ + I
Sbjct: 111 GSLIGKGGNKIKEIREATGAQIQV-ASDVLP-----QSTERAVTLTGTRDSITQCIFHIC 164
Query: 215 NQLRENPPRQV 225
+ E+PP+ V
Sbjct: 165 AVMVESPPKGV 175
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 132/311 (42%), Gaps = 65/311 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G++I++IRE T A I++A D + + ER + ++ D++
Sbjct: 99 MTLRLIVPASQCGSLIGKGGNKIKEIREATGAQIQVASDVLPQSTERAVTLTGT-RDSIT 157
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI-------RLLIAGSQAGC----- 156
+ I A++++ A + A I L AGS AGC
Sbjct: 158 ----QCIFHICAVMVESPPKGVTIPYRAKPQMGAPVILAGGQAFTLASAGSAAGCDVGTM 213
Query: 157 LIGMSGQNIEKL----RNSSGATIVILAPNQLPLCASAHESDRVVQISGDV--------- 203
++G N L + A++ ++ P PL +A ++ +++G+
Sbjct: 214 MVGGGPYNAPMLMVPPSPGAAASLGLIDPLDYPLLKNAFGPSQLGKLTGNPLAGLAALGL 273
Query: 204 -----------PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV 252
PA L AL G+QLR N I+ +
Sbjct: 274 GSLGGPANSFNPAALAALA--GSQLRSNGSGANIN-----------------SRSGGGQQ 314
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ----KHRHIQFGGSAQQV 308
T EM + L+G +IG+ G+ I+ IR SGAMI++ + + R I G+ V
Sbjct: 315 THEMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEDREGSASTDRTITITGNPDSV 374
Query: 309 ALAKQRVDEYI 319
ALA+ ++ I
Sbjct: 375 ALAQYLINMRI 385
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 23/144 (15%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RL++ G + G +IG G+ +++ R SGA I I + +R+V ISG
Sbjct: 14 TLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINI---------SDGSCPERIVTISGST 64
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++ E + ++ + +T +++ S
Sbjct: 65 EAIYKAFSLICTKVEE--------------FIEMQNGKTGATAIGKCGMTLRLIVPASQC 110
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ G+ I IR +GA I+V
Sbjct: 111 GSLIGKGGNKIKEIREATGAQIQV 134
>gi|30696273|ref|NP_200118.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|17065220|gb|AAL32764.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|30725478|gb|AAP37761.1| At5g53060 [Arabidopsis thaliana]
gi|332008915|gb|AED96298.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 652
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 28/197 (14%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD-ND 105
+++++F+I+ P+ +I +V+G+ I ++ E ++++D +A +E++I ISS++ D
Sbjct: 322 SEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPD 381
Query: 106 NVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ A+ AL I I L D N T RLL+ + CL G +G
Sbjct: 382 DPFFPAQEALLHIQTQIIDLIPDKDN------------LITTRLLVPSRDSICLEGKAG- 428
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR----- 218
++ ++ +G ++ ILA ++P CAS + D V+QI+G++ A ALVE+ LR
Sbjct: 429 SVSEISRLTGTSVQILAREEIPRCASIN--DVVIQITGEIRAAREALVELTLLLRSHMFK 486
Query: 219 -----ENPPRQVISISP 230
E PP + P
Sbjct: 487 ELSQKETPPASTSTTGP 503
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDNDN-- 106
+RI+ + G VIGK G I+ IR+ T A I + + + ER+I IS +D D
Sbjct: 70 YRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGRM 129
Query: 107 -VVSDAENALQQIAALILKDD---------DSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
S A+ AL + IL+ + E RL+++ GC
Sbjct: 130 PSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGC 189
Query: 157 LIGMSGQNIEKLRNSSGATIVILA-PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
L+G G+ IE++R + I IL + LP C S S+ +VQI G++ AV NAL + +
Sbjct: 190 LLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSL--SEEIVQIVGELNAVKNALAIVSS 247
Query: 216 QLRENPPR-----QVISISPAYNYSA 236
+LRE+ R Q S SP +++A
Sbjct: 248 RLRESQHRDRSNFQGRSHSPERSFAA 273
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 53/181 (29%)
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
SK +A T R+L ++AG +IG SG I+ +R +GA I + HE
Sbjct: 58 SKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWI------------NVHE 105
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA-----------------YNYS 235
VP ++EI + R +P ++ S SPA + Y
Sbjct: 106 L---------VPGDAERIIEISDNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYG 156
Query: 236 AIRPAQPFVEPTSADYVTF---------EMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
P + DY +++S VG L+G+ G I ++R E+ I+
Sbjct: 157 GPPPEE------EEDYGGVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIR 210
Query: 287 V 287
+
Sbjct: 211 I 211
>gi|380024759|ref|XP_003696159.1| PREDICTED: poly(rC)-binding protein 3-like [Apis florea]
Length = 560
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKV-AAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIE 166
+ + + K ++ S+ + +G V T+RL++ SQ G LIG G I+
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIK 127
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R +GA+I + A + LP + ++R V ISG A+ + I + E+PP+
Sbjct: 128 EIREVTGASIQV-ASDMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESPPK 178
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGS 304
+A+ T EM + L+G +IG+ G+ I+ IR SGAMI++ +G R I G+
Sbjct: 362 AANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGN 421
Query: 305 AQQVALAKQRVD 316
V+LA+ +
Sbjct: 422 PDAVSLAQYLIS 433
>gi|383158165|gb|AFG61431.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 15/144 (10%)
Query: 102 KDNDN-----VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
KDND+ + A++AL ++ ++I ++ S+ + A RLL+A SQ G
Sbjct: 5 KDNDDGDENEPICPAQDALLRVHSVIAQE--SSVKDKDNDADKKGQQNARLLVANSQIGS 62
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
LIG G NI+K+R SGA I I ++LP CA + D +V ISGD AV AL +
Sbjct: 63 LIGKGGNNIQKMRTESGAQIQIPRKDELPGCAFSF--DELVVISGDAKAVKKALYSVSAF 120
Query: 217 LRENPPRQVISISPAYNYSAIRPA 240
L ++PP++ I +S I PA
Sbjct: 121 LYKHPPKEQIP------WSLILPA 138
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV-----YGGKGEQKHRHIQFGGSAQQVAL 310
+L++ S +G LIG+ G+NI ++R ESGA I++ G + G A+ V
Sbjct: 53 LLVANSQIGSLIGKGGNNIQKMRTESGAQIQIPRKDELPGCAFSFDELVVISGDAKAVKK 112
Query: 311 AKQRVDEYIY 320
A V ++Y
Sbjct: 113 ALYSVSAFLY 122
>gi|115482006|ref|NP_001064596.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|78708635|gb|ABB47610.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639205|dbj|BAF26510.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|215693240|dbj|BAG88622.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222612825|gb|EEE50957.1| hypothetical protein OsJ_31513 [Oryza sativa Japonica Group]
Length = 586
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 11/170 (6%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-IADAIARHEERVIIISSKDNDNVVS 109
+FR+++P+ ++G VIG G R++++ EETKA ++ I A E VII + + D
Sbjct: 60 VFRMLIPATKVGAVIGHSGERLRRLCEETKACVRVIGGHFAAAERAVIIFAKEQPDEPKP 119
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +AL ++ I+ DD + + + R+L QA LIG G I ++
Sbjct: 120 PAIDALLRVYECIINDDGLDVRYNNIVVA-------RILTPSEQAASLIGDQGSVINYIK 172
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S I ++ + P+ A E D +++I G V AL + LR+
Sbjct: 173 KASKTNIHVIDGDLPPV---ALEDDMIIEIWGLPARVHQALELVACHLRK 219
>gi|308460519|ref|XP_003092563.1| CRE-PES-4 protein [Caenorhabditis remanei]
gi|308253083|gb|EFO97035.1| CRE-PES-4 protein [Caenorhabditis remanei]
Length = 436
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +I+KIREE+ A I I+D ER++ I+ V+
Sbjct: 73 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSC--PERIVTITG--TLGVIG 128
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A N + ++D + V + T+R+++ +Q G LIG G I+ +R
Sbjct: 129 KAFNMVCNKF-----EEDMLLLPNSVPKPPI---TMRVIVPATQCGSLIGKGGSKIKDIR 180
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
++GA+I + A LP H ++R V +SG A+ + ++ L E PP+ I+
Sbjct: 181 EATGASIQV-ASEMLP-----HSTERAVTLSGTADAINLCMTQVCQILLEAPPKGSTITY 234
Query: 229 SPAYNYSAI 237
P ++ +
Sbjct: 235 RPKPTFNPL 243
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 28/144 (19%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G I+K+R SGA I I + +R+V I+G +
Sbjct: 74 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI---------SDGSCPERIVTITGTL 124
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
+ A + N+ E+ + + P S +P +T +++ +
Sbjct: 125 GVIGKAFNMVCNKFEED-----MLLLPN---SVPKPP-----------ITMRVIVPATQC 165
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ GS I IR +GA I+V
Sbjct: 166 GSLIGKGGSKIKDIREATGASIQV 189
>gi|392894107|ref|NP_497351.3| Protein PES-4 [Caenorhabditis elegans]
gi|373220643|emb|CCD73932.1| Protein PES-4 [Caenorhabditis elegans]
Length = 432
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +I+KIREE+ A I I+D ER++ I+ V+
Sbjct: 72 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISD--GSCPERIVTITG--TLGVIG 127
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A N + ++D + V + T+R+++ +Q G LIG G I+ +R
Sbjct: 128 KAFNMVCNKF-----EEDMLLLPNSVPKPPI---TMRVIVPATQCGSLIGKGGSKIKDIR 179
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
++GA+I + A LP H ++R V +SG A+ + ++ L E PP+ I+
Sbjct: 180 EATGASIQV-ASEMLP-----HSTERAVTLSGTADAINLCMTQVCQILLEAPPKGSTITY 233
Query: 229 SPAYNYSAI 237
P ++ +
Sbjct: 234 RPKPTFNPL 242
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G I+K+R SGA I I + +R+V I+G +
Sbjct: 73 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI---------SDGSCPERIVTITGTL 123
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
+ A + N+ E+ + + P S +P +T +++ +
Sbjct: 124 GVIGKAFNMVCNKFEED-----MLLLPN---SVPKPP-----------ITMRVIVPATQC 164
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRV 315
G LIG+ GS I IR +GA I+V R + G+A + L +V
Sbjct: 165 GSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINLCMTQV 217
>gi|390604812|gb|EIN14203.1| hypothetical protein PUNSTDRAFT_95868 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 330
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 123/273 (45%), Gaps = 45/273 (16%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A + R +V ++ G +IGK G + +R++T ++ + +RV+ IS
Sbjct: 23 AGPDTLTLRALVSTKDAGVIIGKGGKNVADLRDQTGVKAGVSKVVPGVHDRVLTISG--- 79
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+ + + + LI+ +++ S ++A ++RLLI+ + G +IG G
Sbjct: 80 ------SVDRVAKAYGLIVAQLVASNPTSPISASSSTHTSLRLLISHNLMGTIIGRGGTR 133
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I+ ++++SGA +V + + LP ++RVV++ G V A+ A+ +IG L E+ R
Sbjct: 134 IKAIQDNSGARMV-ASKDMLP-----QSTERVVEVHGSVEAIERAVDDIGKSLLEDWERG 187
Query: 225 VISI-----------SPAYNYSAIR---------------PAQPFVE----PTSADYVTF 254
+ ++ + YS R P P + P + T
Sbjct: 188 LGTVLFHPGAGDERSGSSRRYSENRGSYGGSRQSNGRPGSPGSPSRQAPSSPQPTNLRTQ 247
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I +VG +IGR GS I+ IR SG+ I +
Sbjct: 248 NISIPSDMVGCIIGRGGSKITEIRRLSGSKISI 280
>gi|403299426|ref|XP_003940488.1| PREDICTED: RNA-binding protein Nova-2 [Saimiri boliviensis
boliviensis]
Length = 508
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 34/294 (11%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 216 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 275
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 276 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 335
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 336 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP-- 388
Query: 224 QVISISPAYNYSAIRPAQPFV--EPTSADYVT-------FEMLISESLVGGLIGRCGSNI 274
S N S A P PT + Y + + + E+LVG ++G+ G +
Sbjct: 389 ---QSSSCLNISYANVAGPVANSNPTGSPYASPXXXXXXXXIAVPENLVGAILGKGGKTL 445
Query: 275 SRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVALAKQRVDEYIYSQLI 324
+ +GA I++ KGE ++R + GS A + +Y+ SQ +
Sbjct: 446 VEYQELTGARIQI-SKKGEFLPGTRNRRVTITGSP-----AATQAAQYLISQRV 493
>gi|297735477|emb|CBI17917.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 82/144 (56%), Gaps = 3/144 (2%)
Query: 77 EETKATIKIADAIARHEERVIIISSKDNDNV-VSDAENALQQIAALILKDDDSNSEASKV 135
EET+A I++ D +R+++IS ++ +S A +A+ ++ + +S +
Sbjct: 3 EETRARIRVLDGAVGTSDRIVLISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAY 62
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
A VA +IRLL+A +QA LIG G I+ ++ S+GA++ +L+ +++P A+A E R
Sbjct: 63 GAAGVAFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADE--R 120
Query: 196 VVQISGDVPAVLNALVEIGNQLRE 219
+V++ G+ V AL + LR+
Sbjct: 121 IVELQGEALKVQKALEAVVGHLRK 144
>gi|449304748|gb|EMD00755.1| hypothetical protein BAUCODRAFT_60994 [Baudoinia compniacensis UAMH
10762]
Length = 333
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 67/291 (23%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A+AQ + R IV S++ G +IGK G + ++R++T ++ + +RV+ ++
Sbjct: 14 AQAQ-ITLRAIVTSKEAGVIIGKAGQNVAELRDKTGVRAGVSKVVPGVHDRVLTVTGP-- 70
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGM 160
++ A +A ++K A ++ G V AN IRLLI+ +Q G +IG
Sbjct: 71 ---LTGISEAYGLVADGLVKG------APQMGMGGVVANPNTHPIRLLISHNQMGTIIGR 121
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I++++++SG +V LP ++R+V+I G V A+ EIG L ++
Sbjct: 122 QGLKIKQIQDASGVRMVAQK-EMLP-----QSTERIVEIQGTPDGVQKAVWEIGKCLIDD 175
Query: 221 PPR-------------QVISISPAYN---YSAIR----------------PAQ------- 241
R Q + +PA N Y A R P Q
Sbjct: 176 QERGYGTVLYSPAVRVQGAAPTPAMNGTGYGAPRGYNRTGNGADFTGSGAPYQRRSTGPS 235
Query: 242 -----PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P VE D T + I +VG +IGR GS IS IR SGA I +
Sbjct: 236 DTGPPPAVE-DGEDIQTQNISIPADMVGCIIGRGGSKISEIRKSSGARISI 285
>gi|328709627|ref|XP_003244018.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Acyrthosiphon
pisum]
Length = 525
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 45 AKAQD-----VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIII 99
AK++D + R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ I
Sbjct: 3 AKSKDDSNISLTLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTI 60
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVA----ANTIRLLIAGSQAG 155
S + A+ + +LI + E G A T+RL++ SQ G
Sbjct: 61 SG---------STEAIYKAFSLICTKVEEFIEMQNGKTGATAIGKCGMTLRLIVPASQCG 111
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
LIG G I+++R ++GA I + A + LP ++R V ++G ++ + I
Sbjct: 112 SLIGKGGNKIKEIREATGAQIQV-ASDVLP-----QSTERAVTLTGTRDSITQCIFHICA 165
Query: 216 QLRENPPRQV 225
+ E+PP+ V
Sbjct: 166 VMVESPPKGV 175
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 65/308 (21%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G++I++IRE T A I++A D + + ER + ++ D++
Sbjct: 99 MTLRLIVPASQCGSLIGKGGNKIKEIREATGAQIQVASDVLPQSTERAVTLTGT-RDSIT 157
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI-------RLLIAGSQAGC----- 156
+ I A++++ A + A I L AGS AGC
Sbjct: 158 ----QCIFHICAVMVESPPKGVTIPYRAKPQMGAPVILAGGQAFTLASAGSAAGCDVGTM 213
Query: 157 LIGMSGQNIEKL----RNSSGATIVILAPNQLPLCASAHESDRVVQISGDV--------- 203
++G N L + A++ ++ P PL +A ++ +++G+
Sbjct: 214 MVGGGPYNAPMLMVPPSPGAAASLGLIDPLDYPLLKNAFGPSQLGKLTGNPLAGLAALGL 273
Query: 204 -----------PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV 252
PA L AL G+QLR N I+ +
Sbjct: 274 GSLGGPANSFNPAALAALA--GSQLRSNGSGANIN-----------------SRSGGGQQ 314
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ----KHRHIQFGGSAQQV 308
T EM + L+G +IG+ G+ I+ IR SGAMI++ + + R I G+ V
Sbjct: 315 THEMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEDREGSASTDRTITITGNPDSV 374
Query: 309 ALAKQRVD 316
ALA+ ++
Sbjct: 375 ALAQYLIN 382
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 23/144 (15%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RL++ G + G +IG G+ +++ R SGA I I + +R+V ISG
Sbjct: 14 TLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINI---------SDGSCPERIVTISGST 64
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++ E + ++ + +T +++ S
Sbjct: 65 EAIYKAFSLICTKVEE--------------FIEMQNGKTGATAIGKCGMTLRLIVPASQC 110
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ G+ I IR +GA I+V
Sbjct: 111 GSLIGKGGNKIKEIREATGAQIQV 134
>gi|212275472|ref|NP_001130567.1| uncharacterized protein LOC100191666 [Zea mays]
gi|194689502|gb|ACF78835.1| unknown [Zea mays]
gi|413934214|gb|AFW68765.1| hypothetical protein ZEAMMB73_642279 [Zea mays]
Length = 580
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 11/171 (6%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-IADAIARHEERVIIISSKDNDNVV 108
+FR+++P++++G +IG +G R++++ EET+A ++ I + E+ VII + D +
Sbjct: 55 TVFRMLIPAQKVGAIIGHKGERVRRLCEETRACVRIIGGHLCAAEQAVIIFGREQLDEPL 114
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A +AL ++ + +D + V R+L QA LIG G I +
Sbjct: 115 PPAMDALLRVYQQTINNDSLDVGPDNVIVR-------RILAPSEQAASLIGEHGVMINSI 167
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S I +L + P+ A E DRV++I G V AL + + LR+
Sbjct: 168 MEASQTDIRVLDDDLPPV---ALEEDRVIEIWGSPAGVYKALELVASHLRK 215
>gi|341891904|gb|EGT47839.1| CBN-PES-4 protein [Caenorhabditis brenneri]
Length = 438
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +I+KIREE+ A I I+D ER++ I+ V+
Sbjct: 76 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSC--PERIVTITG--TLGVIG 131
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A N + ++D + V + T+R+++ +Q G LIG G I+ +R
Sbjct: 132 KAFNMVCNKF-----EEDMLLLPNSVPKPPI---TMRVIVPATQCGSLIGKGGSKIKDIR 183
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISI 228
++GA+I + A LP H ++R V +SG A+ + ++ L E PP+ I+
Sbjct: 184 EATGASIQV-ASEMLP-----HSTERAVTLSGTADAINLCMTQVCQILLEAPPKGSTITY 237
Query: 229 SPAYNYSAI 237
P ++ +
Sbjct: 238 RPKPTFNPL 246
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G I+K+R SGA I I + +R+V I+G +
Sbjct: 77 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI---------SDGSCPERIVTITGTL 127
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
+ A + N+ E+ + + P S +P +T +++ +
Sbjct: 128 GVIGKAFNMVCNKFEED-----MLLLPN---SVPKPP-----------ITMRVIVPATQC 168
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRV 315
G LIG+ GS I IR +GA I+V R + G+A + L +V
Sbjct: 169 GSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINLCMTQV 221
>gi|443687982|gb|ELT90806.1| hypothetical protein CAPTEDRAFT_1308 [Capitella teleta]
Length = 333
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 16/174 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V R+I+ ++ G +IGK+G ++K RE++ A I I+D + ER++ ++ D +
Sbjct: 2 VTLRMIMQGKEAGSIIGKKGDNVKKFREDSGAKINISD--SSCPERIVTVTGT-TDQIF- 57
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A I +D + ++ + V T+RL++ SQ G LIG G I+++R
Sbjct: 58 ---KAFTMICKKFEEDIVNTHNSTTLPKPPV---TLRLIVPASQCGSLIGKGGAKIKEIR 111
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+GA+I + A LP + ++R V +SG A+ + I + E+PP+
Sbjct: 112 ELTGASIQV-ASEMLP-----NSTERAVTVSGQADAITQCIYNICCVMLESPPK 159
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 119/277 (42%), Gaps = 40/277 (14%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+IVP+ Q G +IGK G +I++IRE T A+I++A + + ER + +S +
Sbjct: 85 VTLRLIVPASQCGSLIGKGGAKIKEIRELTGASIQVASEMLPNSTERAVTVSGQ------ 138
Query: 109 SDA-ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+DA + I ++L+ + V +++ S G + GQ I
Sbjct: 139 ADAITQCIYNICCVMLESPPKGATIPYRPKPCVPP----VMLPSSCGGQAFSIQGQQILL 194
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDR--------VVQISGDVPAVLNALVEIGNQLRE 219
+ AT ++P+ +PL S R + I DV +NA + G + +
Sbjct: 195 PPSHPNATQPDVSPHCVPLPPPCFISLRARLQTHSLICIIIRDVYPGMNAAMAAG--IPQ 252
Query: 220 NPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRN 279
PRQ P N SA T EM I L+G +IGR G+ I+ IR
Sbjct: 253 FAPRQA---GPGANMSA---------------QTHEMTIPNDLIGCIIGRGGAKINEIRQ 294
Query: 280 ESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
SGA IK+ R + GS + + A+ ++
Sbjct: 295 LSGATIKIANADEGSSDRKVTIMGSLETIHAAQYMIN 331
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 26/144 (18%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+++ G +AG +IG G N++K R SGA I I + + +R+V ++G
Sbjct: 3 TLRMIMQGKEAGSIIGKKGDNVKKFREDSGAKINI---------SDSSCPERIVTVTGTT 53
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
+ A I + E+ I +N + + P P VT +++ S
Sbjct: 54 DQIFKAFTMICKKFEED-------IVNTHNSTTL-PKPP---------VTLRLIVPASQC 96
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ G+ I IR +GA I+V
Sbjct: 97 GSLIGKGGAKIKEIRELTGASIQV 120
>gi|321475563|gb|EFX86525.1| hypothetical protein DAPPUDRAFT_307836 [Daphnia pulex]
Length = 364
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 22/182 (12%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A + + R+++ +++G +IGK+G +++ REE+ A I I+D ER++ I+
Sbjct: 13 APSVTLTIRLLMAGKEVGSIIGKKGEIVKRFREESGARINISD--GSCPERIVTITGTT- 69
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMS 161
+A+ + LI K + E AG T+RL++ SQ G LIG
Sbjct: 70 --------DAIFKAFNLICKKLE--EEVGGPLAGTAIPRPPITLRLIMPASQCGSLIGKG 119
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA++V+ A LP + ++R V +SG A+ + I + E+P
Sbjct: 120 GSKIKEIREITGASVVV-ASEMLP-----NSTERAVTVSGTSDAITQCIYHICCVMLESP 173
Query: 222 PR 223
P+
Sbjct: 174 PK 175
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 26/144 (18%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+AG + G +IG G+ +++ R SGA I I + +R+V I+G
Sbjct: 19 TIRLLMAGKEVGSIIGKKGEIVKRFREESGARINI---------SDGSCPERIVTITGTT 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I +L E P + RP +T +++ S
Sbjct: 70 DAIFKAFNLICKKLEEE------VGGPLAGTAIPRPP-----------ITLRLIMPASQC 112
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ GS I IR +GA + V
Sbjct: 113 GSLIGKGGSKIKEIREITGASVVV 136
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQ--KHRHIQFGGSAQQVALAK 312
EM + L+G +IG+ G+ I+ IR SGAMI++ + + R I G+A+ VALA+
Sbjct: 272 EMAVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEDRESSSERTITITGTAESVALAQ 331
Query: 313 QRVD 316
++
Sbjct: 332 YLIN 335
>gi|348537598|ref|XP_003456280.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 593
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 21/177 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I I+ D V
Sbjct: 128 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISE--GSCPERIITITG-PTDCVF- 183
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQNIE 166
A I L++D + VA G V + T+RL+I SQ G LIG G I+
Sbjct: 184 ---RAFTMI-TFKLEED----LMALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIK 235
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R ++GA + + A + LP + ++R V ISG A++ + I + E+PP+
Sbjct: 236 EIRETTGAQVQV-AGDLLP-----NSTEREVTISGSQDAIIQCVKLICTVILESPPK 286
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ G + G +IG G+ ++++R S A I I + +R++ I+G
Sbjct: 129 TLRLLMHGKEVGSIIGKKGETVKRIREESSARINI---------SEGSCPERIITITGPT 179
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
V A I +L E+ ++ N + TS VT ++I S
Sbjct: 180 DCVFRAFTMITFKLEED------LMALVANGTV----------TSKPPVTLRLVIPASQC 223
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I IR +GA ++V G
Sbjct: 224 GSLIGKGGSKIKEIRETTGAQVQVAG 249
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
E+LI L+G +IGR G+ I+ IR SGA IK+ RH+ G+ + LA
Sbjct: 384 ELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQIDSTSDRHVTISGTPIAINLA--- 440
Query: 315 VDEYIYSQLIQQA 327
+Y+ + ++ A
Sbjct: 441 --QYLITSCLETA 451
>gi|302766557|ref|XP_002966699.1| hypothetical protein SELMODRAFT_85231 [Selaginella moellendorffii]
gi|300166119|gb|EFJ32726.1| hypothetical protein SELMODRAFT_85231 [Selaginella moellendorffii]
Length = 324
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 134/310 (43%), Gaps = 58/310 (18%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIIISSKDNDNVV 108
R +V + G VIGK G I + ++ A I+++ + +RV ++S +
Sbjct: 17 LRFLVTNTAAGSVIGKGGSTISDFQAQSGARIQLSRNHEYFPGTSDRVAVLSGS-----L 71
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+D A Q I + I+KDD+ + S ++LL+ + G +IG G NI+K
Sbjct: 72 ADVLTAFQLIISKIIKDDNQDDTKSI---------QVKLLVPKTVCGAIIGKGGSNIKKF 122
Query: 169 RNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
S A+I + + +Q LP DR+V I G+V ++ A+ I +L E +
Sbjct: 123 VEDSQASIKLSSQDQLLPGVI-----DRIVTIGGNVDQIIKAVTLILTKLTEESSYTETT 177
Query: 228 ISPAYNYSAIRPAQPFVE-------------------PTSADYV-----TFEMLISESLV 263
+P Y RP V P YV + + I + +
Sbjct: 178 STPLV-YPGTRPTSFIVRCVYHASPGLQNLRRNGPGPPMPVAYVGALTSSVTIGIPDEHI 236
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVALAKQRVDEYI 319
G ++GR G + ++ SGA IKV +G+ ++R + GS + + A +++
Sbjct: 237 GFILGRAGKTLQELQQSSGAKIKV-SDRGDFVTGTEYRKVTMIGSGEAIQAA-----QFL 290
Query: 320 YSQLIQQAGA 329
+Q +QQ+ A
Sbjct: 291 LTQKVQQSLA 300
>gi|427796273|gb|JAA63588.1| Putative polyc-binding alphacp-1, partial [Rhipicephalus
pulchellus]
Length = 510
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 91/178 (51%), Gaps = 15/178 (8%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND-----NV 107
R+I+ +++G +IGK+G I+K REE+ A I I+D ER++ ++ ++
Sbjct: 77 RLIMQGKEVGSIIGKKGDNIKKFREESGAKINISDGSC--PERIVTVTGSTEAILKAFSL 134
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNI 165
++ + + L ++ + + H+ T+RL++ SQ G LIG G I
Sbjct: 135 IARKFEEMLSLLCLPVQTVGPTLQELQSNGSHLPKPPVTLRLIVPASQCGSLIGKGGSKI 194
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+++R +GA+I + A LP + ++R V +SG A+ + +I + E+PP+
Sbjct: 195 KEIREVTGASIQV-ASEMLP-----NSTERAVTVSGTAEAITKCIYQICCVMMESPPK 246
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
+K G T+RL++ G + G +IG G NI+K R SGA I I +
Sbjct: 64 TKALDGPSVTLTVRLIMQGKEVGSIIGKKGDNIKKFREESGAKINI---------SDGSC 114
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY- 251
+R+V ++G A+L A I + E ++S+ P Q V PT +
Sbjct: 115 PERIVTVTGSTEAILKAFSLIARKFEE-----MLSL-------LCLPVQ-TVGPTLQELQ 161
Query: 252 ----------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
VT +++ S G LIG+ GS I IR +GA I+V
Sbjct: 162 SNGSHLPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV 207
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R+IVP+ Q G +IGK G +I++IRE T A+I++A + + ER + +S
Sbjct: 172 VTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTVS 223
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
EM I L+G +IG+ GS I+ IR SGA IK+ + K R + G+ + + LA+
Sbjct: 336 EMTIPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEEGSKDRTVTISGTPEAINLAQYL 395
Query: 315 VD 316
++
Sbjct: 396 IN 397
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IGK G +I +IR+ + ATIKI+++ ++R + IS
Sbjct: 337 MTIPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEEGSKDRTVTIS 383
>gi|14141168|ref|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapiens]
gi|47940610|gb|AAH71942.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|119617115|gb|EAW96709.1| poly(rC) binding protein 2, isoform CRA_d [Homo sapiens]
Length = 366
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 285 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 344
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 345 ISLAQYLINVRLSSE 359
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 274 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 333
Query: 95 RVIIIS 100
R + I+
Sbjct: 334 RQVTIT 339
>gi|449509689|ref|XP_002192903.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
[Taeniopygia guttata]
Length = 531
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 140/346 (40%), Gaps = 79/346 (22%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKV 64
+I+ P V + P P R G RE G G + K D R++VP++ +G +
Sbjct: 74 KISYIPDEEVSSPPPPQRSRRGGHSSRERGSSPGGS--WQPKQLDFPLRMLVPTQFVGAI 131
Query: 65 IGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122
IGKEG I+ + ++T++ + I + E+ + I ++ + A + I ++
Sbjct: 132 IGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG------CSEACRMILDIM 185
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
K+ D A +V +++L S G LIG G+N++K+ +G I I
Sbjct: 186 QKEADETKSAEEVP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQ 237
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSA 236
L + + +R + + G A NA VEI +LRE V++++ P N SA
Sbjct: 238 DL----TIYNPERTITVKGSTEACSNAEVEIMKKLREAYENDVVAVNQQANLIPGLNLSA 293
Query: 237 I----------------------RPAQPFVEPT------SADYVT--------------- 253
+ P PF + + S+ Y++
Sbjct: 294 LGIFSTGLSMLPSTPGARGAAAATPYHPFAQQSGRRRTGSSAYLSSLYGAPPAGAFPHQH 353
Query: 254 -------FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
+ I VG +IG+ G +I ++ +GA IK+ +G
Sbjct: 354 PLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEG 399
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G+ P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 347 GAFPHQHPLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDASERM 406
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + AG
Sbjct: 407 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIKVPSF-------AAGR 454
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 455 VIGKGGKTVNELQNLTSAEVIV 476
>gi|61557337|ref|NP_001013241.1| poly(rC)-binding protein 2 [Rattus norvegicus]
gi|193083108|ref|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo sapiens]
gi|6707736|sp|Q15366.1|PCBP2_HUMAN RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E2; Short=hnRNP E2
gi|460773|emb|CAA55015.1| hnRNP-E2 [Homo sapiens]
gi|50926841|gb|AAH78906.1| Poly(rC) binding protein 2 [Rattus norvegicus]
gi|119617116|gb|EAW96710.1| poly(rC) binding protein 2, isoform CRA_e [Homo sapiens]
Length = 365
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----CP-----ERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 234 YSAIRPAQPFVE-----PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+S I + P V+ SA + E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 265 FSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA 324
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 325 NPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 358
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 IEGSDPKRR------AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
IE S P+ + A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ +
Sbjct: 268 IESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 327
Query: 90 ARHEERVIIIS 100
+R + I+
Sbjct: 328 EGSTDRQVTIT 338
>gi|361066701|gb|AEW07662.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158160|gb|AFG61426.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158161|gb|AFG61427.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158162|gb|AFG61428.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158163|gb|AFG61429.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158164|gb|AFG61430.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158166|gb|AFG61432.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158167|gb|AFG61433.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158168|gb|AFG61434.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158169|gb|AFG61435.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158170|gb|AFG61436.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158171|gb|AFG61437.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158172|gb|AFG61438.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158173|gb|AFG61439.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158174|gb|AFG61440.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158175|gb|AFG61441.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158176|gb|AFG61442.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158177|gb|AFG61443.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D + + A++AL ++ ++I ++ S+ + A RLL+A SQ G LIG G
Sbjct: 11 DENEPICPAQDALLRVHSVIAQE--SSVKDKDNDADKKGQQNARLLVANSQIGSLIGKGG 68
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
NI+K+R SGA I I ++LP CA + D +V ISGD AV AL + L ++PP
Sbjct: 69 NNIQKMRTESGAQIQIPRKDELPGCAFSF--DELVVISGDAKAVKKALYSVSAFLYKHPP 126
Query: 223 RQVISISPAYNYSAIRPA 240
++ I +S I PA
Sbjct: 127 KEQIP------WSLILPA 138
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV-----YGGKGEQKHRHIQFGGSAQQVAL 310
+L++ S +G LIG+ G+NI ++R ESGA I++ G + G A+ V
Sbjct: 53 LLVANSQIGSLIGKGGNNIQKMRTESGAQIQIPRKDELPGCAFSFDELVVISGDAKAVKK 112
Query: 311 AKQRVDEYIY 320
A V ++Y
Sbjct: 113 ALYSVSAFLY 122
>gi|343427422|emb|CBQ70949.1| related to PBP2-PAB1 binding protein [Sporisorium reilianum SRZ2]
Length = 416
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 51/275 (18%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
+A + R ++ + +IGK G I +IR+++ A + I++ I + ER++
Sbjct: 109 QATQISMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERIL-------- 160
Query: 106 NVVSDAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
VS +A+ + LI++ +D+ + S + V TIR ++ S+ G +IG G
Sbjct: 161 -TVSGPLDAVSKAFGLIVRRINDEPFDQPSVPGSKSV---TIRFIVPNSRMGSVIGKQGS 216
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I++++ +SGA + LP ++RV+ ISG AV A+ +G L E+ R
Sbjct: 217 KIKEIQEASGARLT-AGEAMLP-----GSTERVLSISGVADAVHIAVYYVGTILLEHQDR 270
Query: 224 QV--ISISPAYNYSAIRPAQPFVEPTSADYVTF--------------------------- 254
+ P + RP P P +A F
Sbjct: 271 NANNLPYRPTAGGPSTRPPAPGANPYAAPQQPFGYGAPAPPFGGAPAGAGGAPQLPPGSQ 330
Query: 255 --EMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
++ I LVG +IG+ GS I+ IR+ S + IK+
Sbjct: 331 TQQIFIPNDLVGCIIGKGGSKINEIRSMSASHIKI 365
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 54/211 (25%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDND 105
++ V R IVP+ ++G VIGK+G +I++I+E + A + +A + ERV+ IS
Sbjct: 193 SKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARLTAGEAMLPGSTERVLSISG---- 248
Query: 106 NVVSDAEN-ALQQIAALILKDDDSNSE-------------------ASKVAA-----GHV 140
V+DA + A+ + ++L+ D N+ A+ AA G+
Sbjct: 249 --VADAVHIAVYYVGTILLEHQDRNANNLPYRPTAGGPSTRPPAPGANPYAAPQQPFGYG 306
Query: 141 ---------------------AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
+ T ++ I GC+IG G I ++R+ S + I I+
Sbjct: 307 APAPPFGGAPAGAGGAPQLPPGSQTQQIFIPNDLVGCIIGKGGSKINEIRSMSASHIKIM 366
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNAL 210
P + A ++R+V I+G P + A+
Sbjct: 367 EPGAG-IAAGGSGNERLVTITGPPPNIQMAV 396
>gi|406697218|gb|EKD00483.1| telomere length regulating RNA binding protein, Pbp2p [Trichosporon
asahii var. asahii CBS 8904]
Length = 793
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 124/253 (49%), Gaps = 28/253 (11%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
AQ + R ++ ++ +IG+ G + +IRE++ A + I+++I + ER++ N
Sbjct: 85 AQQISMRALIVTQDASVIIGRAGAHVNEIREKSGARVTISESIPGNPERIL--------N 136
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V + + ++ + +D + + V A TI+ +I S+ G +IG G I+
Sbjct: 137 VFGALDAVSKAFGLIVRRINDEPFDVASVPGSR--AVTIKFIIPNSRMGSVIGRGGSKIK 194
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+++++SGA L +++ L S ++R++ +SG A+ A+ IG L E R
Sbjct: 195 EIQDASGAR---LNASEVMLPGS---TERILSVSGVADAIHIAVYYIGTILLEYQERNPG 248
Query: 227 SISPAYNY-------SAIRPAQPFVEP-----TSADYVTFEMLISESLVGGLIGRCGSNI 274
S Y +A +P+ V P ++ T ++ I SLVG +IG+ GS I
Sbjct: 249 PHSGIGTYRQQPQGMAAAQPSFTGVAPGAGGASAPGSQTQQIFIPNSLVGAIIGKAGSKI 308
Query: 275 SRIRNESGAMIKV 287
+ IR +S I+V
Sbjct: 309 NEIRAQSQCQIRV 321
>gi|148223980|ref|NP_001082843.1| uncharacterized protein LOC557028 [Danio rerio]
gi|94732695|emb|CAK10813.1| novel protein similar to human IGF-II mRNA-binding protein 2
(IMP-2) [Danio rerio]
gi|167614340|gb|ABZ89742.1| IGF-II mRNA-binding protein 2b variant 1 [Danio rerio]
gi|167614342|gb|ABZ89743.1| IGF-II mRNA-binding protein 2b variant 2 [Danio rerio]
Length = 436
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 134/316 (42%), Gaps = 49/316 (15%)
Query: 25 VSGKRRREDGE--IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
V+G R +E G+ G R + Q++ RI+VP++ +G +IGKEG I+ I ++T++
Sbjct: 2 VTGSREQEFGQPGAMGGPQGPRQRQQELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSK 61
Query: 83 IKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV 140
+ I + E+ + I SSK+ Q +IL+ + + +K+ V
Sbjct: 62 VDIHRKENAGATEKAITIHSSKE----------GCSQACRMILEIMEKEANDTKI----V 107
Query: 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+++L S G LIG G+N++K+ +G I I A L + + +R + +
Sbjct: 108 EEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQDL----TVYNQERTISVR 163
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSA---------------IRPAQPFVE 245
G V A EI +LRE V S++ N A + P +
Sbjct: 164 GGVEECCKAEGEIMKKLREAHENDVASVNQQTNMMAGLNLSALGIFSSGMSVLPPASGLR 223
Query: 246 PTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY------------GGKGE 293
+ + + L+ S++GGL G S ++ G VY G KG+
Sbjct: 224 GSLSTPANYSPLLGPSIMGGLYGVPSSGALSLQQAGGEQEVVYLFIPTPAVGALIGKKGQ 283
Query: 294 QKHRHIQFGGSAQQVA 309
F G++ ++A
Sbjct: 284 HIKELAHFAGASIKIA 299
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISSKDNDN 106
Q+V++ + +P+ +G +IGK+G I+++ A+IKIA + E ER++II+
Sbjct: 262 QEVVY-LFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMVIITGP---- 316
Query: 107 VVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+A+ Q LK+++ + E K+ A H+ + + AG +IG G+
Sbjct: 317 --PEAQFKAQGRIYGKLKEENFFTAKEEVKLEA-HIK-------VPSTAAGRVIGKGGKT 366
Query: 165 IEKLRNSSGATIVI 178
+ +L+N + A +++
Sbjct: 367 VNELQNLTSAEVIV 380
>gi|401880798|gb|EJT45110.1| telomere length regulating RNA binding protein, Pbp2p [Trichosporon
asahii var. asahii CBS 2479]
Length = 793
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 124/253 (49%), Gaps = 28/253 (11%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
AQ + R ++ ++ +IG+ G + +IRE++ A + I+++I + ER++ N
Sbjct: 85 AQQISMRALIVTQDASVIIGRAGAHVNEIREKSGARVTISESIPGNPERIL--------N 136
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V + + ++ + +D + + V A TI+ +I S+ G +IG G I+
Sbjct: 137 VFGALDAVSKAFGLIVRRINDEPFDVASVPGSR--AVTIKFIIPNSRMGSVIGRGGSKIK 194
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+++++SGA L +++ L S ++R++ +SG A+ A+ IG L E R
Sbjct: 195 EIQDASGAR---LNASEVMLPGS---TERILSVSGVADAIHIAVYYIGTILLEYQERNPG 248
Query: 227 SISPAYNY-------SAIRPAQPFVEP-----TSADYVTFEMLISESLVGGLIGRCGSNI 274
S Y +A +P+ V P ++ T ++ I SLVG +IG+ GS I
Sbjct: 249 PHSGIGTYRQQPQGMAAAQPSFTGVAPGAGGASAPGSQTQQIFIPNSLVGAIIGKAGSKI 308
Query: 275 SRIRNESGAMIKV 287
+ IR +S I+V
Sbjct: 309 NEIRAQSQCQIRV 321
>gi|90652817|ref|NP_001035073.1| uncharacterized protein LOC664755 [Danio rerio]
gi|68533566|gb|AAH98540.1| Zgc:110045 [Danio rerio]
Length = 222
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I+D ER++ I+
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISD--GSSPERIVTITG-------- 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
A + + A+I + + + AS + + + T+RL+ SQ G LIG G I++
Sbjct: 67 -ASEVIFKAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKE 125
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+R S+GA + + A + LP ++R V ISG A+ + I + E+PP+
Sbjct: 126 IRESTGAQVQV-AGDLLP-----DSTERAVTISGTPHAITQCVKHICTVMLESPPK 175
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G+ ++K+R SGA I I + +R+V I+G
Sbjct: 18 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---------SDGSSPERIVTITGAS 68
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
+ A I + E+ ++ N + TS VT ++ S
Sbjct: 69 EVIFKAFAMIAEKFEED------ILASMINSTV----------TSRPPVTLRLVFPASQC 112
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ GS I IR +GA ++V G
Sbjct: 113 GSLIGKGGSKIKEIRESTGAQVQVAG 138
>gi|417410186|gb|JAA51570.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 376
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 78
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 79 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 133
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 134 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 187
Query: 223 RQV 225
+ V
Sbjct: 188 KGV 190
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 25/169 (14%)
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
++L+ N + + G TIRLL+ G + G +IG G++++K+R SGA I I
Sbjct: 4 VLLRRTLLNMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-- 61
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
+ + +R++ ++G A+ A I ++L E+ IS S + +A RP
Sbjct: 62 -------SEGNCPERIITLAGPTNAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP 109
Query: 241 QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ G I IR +GA ++V G
Sbjct: 110 -----------VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 147
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 234 YSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+S I + P V+ A T E+ I +L+G +IGR G+NI+ IR SGA IK+
Sbjct: 277 FSGIESSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA 336
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R + GSA ++LA+ ++ + S+
Sbjct: 337 NPVEGSSGRQVTITGSAASISLAQYLINARLSSE 370
>gi|354484186|ref|XP_003504271.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Cricetulus griseus]
Length = 487
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 117/251 (46%), Gaps = 25/251 (9%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDN 106
D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+ V I ++ + +
Sbjct: 124 DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS 183
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A + I ++ K+ + A +V +++L G LIG G+N++
Sbjct: 184 ------EACRMILEIMQKEAEDTKLAEEVP--------LKILAHNGLVGRLIGKEGRNLK 229
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
K+ + +G I I + L S + +R + + G + A NA +EI +LRE ++
Sbjct: 230 KIEHETGTKITISSLQDL----SIYNPERTITVKGTIDACANAEMEIMKKLREAFENDML 285
Query: 227 SISPAYN-----YSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
+++ Y + + T + I VG +IG+ G++I ++ +
Sbjct: 286 AVNSHSGYFPNMYPHHHFGPFPHHHSYPEQETVNLFIPTQAVGAIIGKKGAHIKQLARFA 345
Query: 282 GAMIKVYGGKG 292
GA IK+ +G
Sbjct: 346 GASIKIAPAEG 356
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 320 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 374
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 375 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 427
Query: 173 GATIVI 178
A +++
Sbjct: 428 SAEVIV 433
>gi|417399455|gb|JAA46731.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 351
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
T E+ I +L+G +IGR G+NI+ IR SGA IK+ R + GSA ++LA
Sbjct: 275 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLA 334
Query: 312 KQRVDEYIYSQ 322
+ ++ + S+
Sbjct: 335 QYLINARLSSE 345
>gi|313239007|emb|CBY13992.1| unnamed protein product [Oikopleura dioica]
Length = 386
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 33/197 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV--IIISSKDNDNV 107
+ R ++PS+ G +IG+ G I+ +REE +A I I + AR ERV I ++S++ +
Sbjct: 96 IWCRFLIPSKVAGAIIGRGGATIRALREEYQAIINIPE--ARAPERVLKICVNSRETLHT 153
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ + QIA ++ ++ S + G +R+L+ SQAG +IG G ++
Sbjct: 154 I------VSQIAEILKNENAKGSHNGRRKEGET---ELRILVQSSQAGAIIGTKGSTVKN 204
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI----------GNQL 217
LR ++G+ I I P C + S+RV I G V+ + I GN+
Sbjct: 205 LRETTGSRINI-----NPECC-PNSSERVAAIMGPPATVVKCISMIYDILERVPAKGNEQ 258
Query: 218 RENPPRQVISISPAYNY 234
R +P P Y+Y
Sbjct: 259 RYDP----NMFDPTYDY 271
>gi|357117002|ref|XP_003560265.1| PREDICTED: uncharacterized protein LOC100827626 [Brachypodium
distachyon]
Length = 656
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 9/173 (5%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
Q + FR++ G +IGK+G I+ ET A+I + + + ERVI IS+ ++
Sbjct: 279 QQISFRLLCHVNLAGGLIGKKGMIIKGFETETGASIDVGNPFSGCMERVITISALESPGK 338
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
S ++A+ I D E + + R+L+ SQ L+G+ G I++
Sbjct: 339 HSKVQSAILCIF-------DRMEEVERNLMFGKPECSARVLVPKSQFSSLVGLGGAIIKE 391
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ S+GA I IL +P CAS E RV+QI+G++ V +AL + +LR +
Sbjct: 392 MVKSTGARIEILDEMDVPACASNCE--RVLQITGNLVNVRDALFVVSEKLRNH 442
>gi|417410200|gb|JAA51577.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 378
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 78
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 79 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 133
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 134 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 187
Query: 223 RQV 225
+ V
Sbjct: 188 KGV 190
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 25/169 (14%)
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
++L+ N + + G TIRLL+ G + G +IG G++++K+R SGA I I
Sbjct: 4 VLLRRTLLNMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-- 61
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
+ + +R++ ++G A+ A I ++L E+ IS S + +A RP
Sbjct: 62 -------SEGNCPERIITLAGPTNAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP 109
Query: 241 QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ G I IR +GA ++V G
Sbjct: 110 -----------VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 147
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 297 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 356
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 357 ISLAQYLINVRLSSE 371
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 286 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 345
Query: 95 RVIIIS 100
R + I+
Sbjct: 346 RQVTIT 351
>gi|347300276|ref|NP_001231441.1| poly(rC) binding protein 2 [Sus scrofa]
gi|417399505|gb|JAA46755.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 353
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 272 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 331
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 332 ISLAQYLINVRLSSE 346
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 271 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 326
>gi|397521979|ref|XP_003846057.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 2 [Pan
paniscus]
Length = 465
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 102/191 (53%), Gaps = 21/191 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
++R S+GA + + A + LP + ++R + I+G +++ + +I + E+P I
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPKGVTI 175
Query: 227 SISPAYNYSAI 237
P + S +
Sbjct: 176 PYRPKPSSSPV 186
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 280 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 339
Query: 308 VALAKQRVD 316
++LA+ ++
Sbjct: 340 ISLAQYLIN 348
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 269 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 328
Query: 95 RVIIIS 100
R + I+
Sbjct: 329 RQVTIT 334
>gi|403417714|emb|CCM04414.1| predicted protein [Fibroporia radiculosa]
Length = 420
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 47/267 (17%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A A ++ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++
Sbjct: 115 APAANIHMRCLIVTQDASIIIGKGGSHVNEIREKSSARVMVSESIPGNPERIL------- 167
Query: 105 DNVVSDAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
VS +A+ + LI++ +D+ + S + V TI+ +I S+ G +IG G
Sbjct: 168 --NVSGPLDAVSKAFGLIVRRINDEPFDKPSVPGSRAV---TIKFMIPNSRMGSVIGKGG 222
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++++++SGA + + LP ++RV+ +SG A+ A IGN L E
Sbjct: 223 AKIKEIQDASGARLN-ASEGMLP-----GSTERVLSVSGVADAIHIATYYIGNILIEANE 276
Query: 223 RQVISISPAYNYSA-IRPAQPF--VEPTSADYV-------------------TFEMLISE 260
R P+YN S+ RP+ P + YV T ++ I
Sbjct: 277 RL-----PSYNNSSYYRPSSNSRRPPPNGSSYVPGYSNTYPGSSHGPPQQLQTQQIYIPN 331
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKV 287
LVG +IG+ GS I+ IR+ S + IK+
Sbjct: 332 DLVGCIIGKGGSKINEIRHMSASNIKI 358
>gi|405977635|gb|EKC42074.1| Poly(rC)-binding protein 3 [Crassostrea gigas]
Length = 439
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 19/171 (11%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+I+ +++G +IGK+G I+K RE++ A I I+D ER++ V+
Sbjct: 15 RMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISD--GSCPERIV---------TVTGTT 63
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ + +I K + + + + T+RL++ SQ G LIG G I+++R ++
Sbjct: 64 ECIHKAFTMICKKFEEDLQNTPTVPKPPV--TLRLVVPASQCGSLIGKGGSKIKEIRETT 121
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
GA+I + A LP + ++R V +SG A+ + I + + E+PP+
Sbjct: 122 GASIQV-ASEMLP-----NSTERAVTVSGTADAITLCIQNICSIMLESPPK 166
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
V+ T+R+++ G + G +IG G NI+K R SGA I I + +R+V +
Sbjct: 9 VSLLTVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINI---------SDGSCPERIVTV 59
Query: 200 SGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLIS 259
+G + A I + E+ + P P VT +++
Sbjct: 60 TGTTECIHKAFTMICKKFEED-----------LQNTPTVPKPP---------VTLRLVVP 99
Query: 260 ESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRV 315
S G LIG+ GS I IR +GA I+V R + G+A + L Q +
Sbjct: 100 ASQCGSLIGKGGSKIKEIRETTGASIQVASEMLPNSTERAVTVSGTADAITLCIQNI 156
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA- 86
K+ ED + + PK V R++VP+ Q G +IGK G +I++IRE T A+I++A
Sbjct: 75 KKFEEDLQNTPTVPK-----PPVTLRLVVPASQCGSLIGKGGSKIKEIRETTGASIQVAS 129
Query: 87 DAIARHEERVIIIS 100
+ + ER + +S
Sbjct: 130 EMLPNSTERAVTVS 143
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQR 314
EM I L+G +IGR G I+ IR SGAMIK+ + R + G+ + + LA+
Sbjct: 273 EMAIPNDLIGCIIGRGGQKINEIRQMSGAMIKISNAEEGAPDRKVTITGTPETIGLAQYL 332
Query: 315 VD 316
++
Sbjct: 333 IN 334
>gi|402593291|gb|EJW87218.1| KH domain-containing protein [Wuchereria bancrofti]
Length = 359
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 142/341 (41%), Gaps = 76/341 (22%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
SGKR+R D E A R++V SR G +IGK G I+++R E A + +
Sbjct: 21 SGKRQRPDSYQEA------LAAGKYELRLLVSSRGAGGIIGKGGENIKRLRSEYDANVTV 74
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D+ + ER+ I V+ EN L + +I K DD ++ + + +
Sbjct: 75 PDS--QTPERIATI--------VATVENVLSIVTEIIPKLDDRTLQSREGDSNRPIE--L 122
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
R+L+ S AG +IG G I++++ G + + A Q P ++RVV I G
Sbjct: 123 RVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFA--QCP----PQSTERVVSIKGAPDK 176
Query: 206 VLNALVEIGNQLRENP------PRQVISISPAYN--YSAIRPAQ---------------- 241
+L + I N L+E P P + + P+Y+ Y P +
Sbjct: 177 ILACVNHIMNMLKEIPIKGVTKPYESMFYDPSYSSEYGGYPPDRNYRGPMIRGPMAVTSY 236
Query: 242 -----------------------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
P++ P + VT I L G +IG+ G I+R+R
Sbjct: 237 GNYGRSFQRQIGGRGPLSAVALPPYMGPEESTQVT----IPNELGGTIIGKGGERINRVR 292
Query: 279 NESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
ESGA I V G + E R I G++ + A+ + +++
Sbjct: 293 EESGAQI-VVGPQQESGERIITITGTSTAIQTAQYLLQQWL 332
>gi|393907134|gb|EFO25357.2| hypothetical protein LOAG_03127 [Loa loa]
Length = 341
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 142/349 (40%), Gaps = 85/349 (24%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
SGKR+R D E R++V SR G +IGK G I+++R E A + +
Sbjct: 21 SGKRQRPDSYQEA------LAVGKYELRLLVSSRGAGGIIGKGGENIKRLRSEYDANVTV 74
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D+ + ER+ I V+ EN L + +I K DDS S +
Sbjct: 75 PDS--QTPERIATI--------VATIENVLAIVTEIIPKLDDSREGDSNRPI------EL 118
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
R+L+ S AG +IG G I++++ G + + A Q P ++RVV I G
Sbjct: 119 RVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFA--QCP----PQSTERVVSIKGAPDK 172
Query: 206 VLNALVEIGNQLRENP------PRQVISISPAY--------------------------- 232
++ + I N L+E P P + + P+Y
Sbjct: 173 IIACVNHIMNMLKEIPIKGVTKPYESMFYDPSYSAEYGGYPPDRNYRGPMIRGPMAMTSY 232
Query: 233 -NYSAIRPAQ-------------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
NY P Q P++ P + VT I L G +IG+ G I+R+R
Sbjct: 233 GNYGRNFPRQIGGRGPLSAVALPPYMGPEESTQVT----IPNELGGTIIGKGGERINRVR 288
Query: 279 NESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
ESGA I V G + E R I G++ + A +Y+ Q ++Q+
Sbjct: 289 EESGAQI-VVGPQQESGERIITITGTSTAIQTA-----QYLLQQCVRQS 331
>gi|405122865|gb|AFR97631.1| cytoplasmic protein [Cryptococcus neoformans var. grubii H99]
Length = 357
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 21/254 (8%)
Query: 39 SDPKRRAKA----QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
S+P AK Q + R ++ ++ +IG+ G + +IRE++ A + ++++I + E
Sbjct: 65 SEPTAPAKPDPGPQQISMRSLIVTQDASIIIGRGGAHVNEIREKSSARVTVSESIPGNPE 124
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
R++ NV + + ++ + +D + V A TI+ +I S+
Sbjct: 125 RIL--------NVSGPLDAVAKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFIIPNSRM 174
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G +IG G I++++ +SGA L ++ L S ++RV+ +SG AV A+ IG
Sbjct: 175 GSVIGKGGSKIKEIQEASGAR---LNASEAMLPGS---TERVLSVSGVADAVHIAVYYIG 228
Query: 215 NQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLISESLVGGLIGRCGSN 273
L E R + + +Y S R + T ++ I +LVG +IGR GS
Sbjct: 229 TILLEYQDRYPANATGSYKQSQSRGPPANSNAPPPPGMQTQQIFIPNALVGAIIGRGGSK 288
Query: 274 ISRIRNESGAMIKV 287
I+ IR++S I+V
Sbjct: 289 INEIRSQSSCQIRV 302
>gi|356528013|ref|XP_003532600.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 167
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 18/164 (10%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS- 100
+ R V FR++ + ++G +IGK G I+ ++E T A I+I DA +RVI++S
Sbjct: 17 RSRHYTTHVTFRLLCHASRVGAIIGKSGVLIKSLQEATGAKIRIVDAPPDSPDRVILVSA 76
Query: 101 -SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI---RLLIAGSQAGC 156
S D +S A+ AL ++ +L VAAG + + RLL SQ G
Sbjct: 77 PSVTEDGELSTAQEALLKVFDRVL----------DVAAGTEVGDLVVSCRLLAETSQVGA 126
Query: 157 LIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+IG +G+ +EK+R +G I +L LP A SD +V++S
Sbjct: 127 VIGKAGKVVEKIRMDTGCKIRVLN-EGLP--AGTAPSDEIVEVS 167
>gi|321258532|ref|XP_003193987.1| telomere length regulating RNA binding protein; Pbp2p [Cryptococcus
gattii WM276]
gi|317460457|gb|ADV22200.1| Telomere length regulating RNA binding protein, putative; Pbp2p
[Cryptococcus gattii WM276]
Length = 357
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 123/254 (48%), Gaps = 21/254 (8%)
Query: 39 SDPKRRAKA----QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
S+P AK Q + R ++ ++ +IG+ G + +IRE++ A + ++++I + E
Sbjct: 65 SEPTAPAKPDPGPQQISMRSLIVTQDASIIIGRGGAHVNEIREKSSARVTVSESIPGNPE 124
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
R++ NV + + ++ + +D + V A TI+ +I S+
Sbjct: 125 RIL--------NVSGPLDAVAKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFIIPNSRM 174
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G +IG G I++++ +SGA L ++ L S ++RV+ +SG AV A+ IG
Sbjct: 175 GSVIGKGGSKIKEIQEASGAR---LNASEAMLPGS---TERVLSVSGVADAVHIAVYYIG 228
Query: 215 NQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLISESLVGGLIGRCGSN 273
L E R + + +Y S R P + T ++ I +LVG +IGR GS
Sbjct: 229 TILLEYQDRYPANATGSYRQSQSRGPPPNSNAPPPPGMQTQQIFIPNALVGAIIGRGGSK 288
Query: 274 ISRIRNESGAMIKV 287
I+ IR++S I+V
Sbjct: 289 INEIRSQSSCQIRV 302
>gi|380792097|gb|AFE67924.1| poly(rC)-binding protein 2 isoform f, partial [Macaca mulatta]
Length = 197
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 100/183 (54%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPP 222
++R S+GA + + A + LP + ++R + I+G +++ + +I L ++PP
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175
Query: 223 RQV 225
+ V
Sbjct: 176 KGV 178
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q + +++ +
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLET 169
Query: 323 LIQ 325
L Q
Sbjct: 170 LSQ 172
>gi|158293685|ref|XP_557579.3| AGAP004942-PA [Anopheles gambiae str. PEST]
gi|157016566|gb|EAL40201.3| AGAP004942-PA [Anopheles gambiae str. PEST]
Length = 382
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 33/186 (17%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A + R+I+ +++G +IGK+G +++ REE+ A I I+D ER++
Sbjct: 19 AVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD--CSCPERIV--------- 67
Query: 107 VVSDAENALQQIAALILK---------DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
VS + +A+ + LI K D++N++ IRL++ SQ G L
Sbjct: 68 TVSGSRSAIYKAFTLITKKFEEWCSQFQDNANTQGKPQIP-------IRLIVPASQCGSL 120
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G I+++R +G +I + A LP + ++R V +SG A+ + I +
Sbjct: 121 IGKGGSKIKEIREITGCSIQV-ASEMLP-----NSTERAVTLSGSAEAITQCIYHICCVM 174
Query: 218 RENPPR 223
E+PP+
Sbjct: 175 LESPPK 180
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK---GEQKHRHIQFGGSAQQVA 309
+ EM + L+G +IG+ G+ I+ IR SGAMI++ + R I G+ VA
Sbjct: 287 SHEMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEERDSGNTDRTITITGNPDSVA 346
Query: 310 LAKQRVDEYI 319
LA+ ++ I
Sbjct: 347 LAQYLINMRI 356
>gi|241956728|ref|XP_002421084.1| RNA-binding protein, putative [Candida dubliniensis CD36]
gi|223644427|emb|CAX41241.1| RNA-binding protein, putative [Candida dubliniensis CD36]
Length = 377
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 123/290 (42%), Gaps = 41/290 (14%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR ET I+ I ER++ +S K + D
Sbjct: 83 YRVLVSAKEAGCLIGTNGQVIDSIRNETSTKAGISRLIPGSHERILTVSGK-----LDDC 137
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIE 166
AL A ++ + N + NT +RLLI SQ G LIG G I+
Sbjct: 138 AKALSYFAQALINGNIENYNYFPLKQLSSTPNTNDTTILRLLIPNSQMGTLIGFKGIRIQ 197
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV- 225
+L+N+ ++ I + + LP ++R+V++ G V + ++L I L E+ V
Sbjct: 198 QLQNNYNISM-IASKSFLP-----GSNERLVELQGTVDDLYDSLRIISRCLIEDFSSIVG 251
Query: 226 ----ISISPAYNYSAIRPAQPFVEPT----------------SADYVTFEMLISESLVGG 265
+ Y++S T + D ++F +VG
Sbjct: 252 TTYYVPRGNTYSHSHNHNHNHNNNSTGVGAGSGVGGGSGAGKTIDTISFP----NDIVGA 307
Query: 266 LIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRV 315
LIG+ GS I +R SGAMI + + R GS+ V AKQ +
Sbjct: 308 LIGKRGSRIDGVRKVSGAMIAISEIIEGENERIFTITGSSHSVEKAKQMI 357
>gi|307187117|gb|EFN72361.1| Far upstream element-binding protein 1 [Camponotus floridanus]
Length = 690
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 131/288 (45%), Gaps = 41/288 (14%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
I VP + +G +IG+ G +I +++ ET I++A ERV ++ +A N
Sbjct: 103 IRVPDKMVGLIIGRGGEQITRLQSETGCKIQMAPESGGLPERVCTLTGS------REAVN 156
Query: 114 ALQQIAALILKD----------DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+++ I+ + S++ AS G + + ++I G + G +IG G+
Sbjct: 157 RAKELVLSIVNQRSRSEGIGDINMSSASASGGNGGMIHPGFVEIMIPGPKVGLIIGKGGE 216
Query: 164 NIEKLRNSSGATIVIL--APNQLPLCASAHESDRVVQISGDVPAVLNA-------LVEIG 214
I++L+ SGA +V++ P+Q E ++ ++I+GD V A + E
Sbjct: 217 TIKQLQEKSGAKMVVIQEGPSQ--------EQEKPLRITGDPQKVEYAKQLVYELIAEKE 268
Query: 215 NQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
Q+ R N S+ P ++D V E+L+ + VG +IG+ G I
Sbjct: 269 MQMFHRGGRGTERTGNYSNDSSFNHG-----PANSDGV--EVLVPRAAVGVVIGKGGDMI 321
Query: 275 SRIRNESGAMIKVYGGKGE-QKHRHIQFGGSAQQVALAKQRVDEYIYS 321
+I+ ESGA ++ G+ + R G Q V A+QR+ E I S
Sbjct: 322 KKIQAESGAKVQFQQGREDGPGDRKCLLSGKHQAVEQARQRIQELIDS 369
>gi|58259741|ref|XP_567283.1| cytoplasm protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134116752|ref|XP_773048.1| hypothetical protein CNBJ3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255668|gb|EAL18401.1| hypothetical protein CNBJ3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229333|gb|AAW45766.1| cytoplasm protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 357
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 123/254 (48%), Gaps = 21/254 (8%)
Query: 39 SDPKRRAKA----QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
S+P AK Q + R ++ ++ +IG+ G + +IRE++ A + ++++I + E
Sbjct: 65 SEPTAPAKPDPGPQQISMRSLIVTQDASIIIGRGGAHVNEIREKSSARVTVSESIPGNPE 124
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
R++ NV + + ++ + +D + V A TI+ +I S+
Sbjct: 125 RIL--------NVSGPLDAVAKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFIIPNSRM 174
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G +IG G I++++ +SGA L ++ L S ++RV+ +SG AV A+ IG
Sbjct: 175 GSVIGKGGSKIKEIQEASGAR---LNASEAMLPGS---TERVLSVSGVADAVHIAVYYIG 228
Query: 215 NQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLISESLVGGLIGRCGSN 273
L E R + + +Y S R P + T ++ I +LVG +IGR GS
Sbjct: 229 TILLEYQDRYPSNATGSYKQSQSRGPPPNSNAPPPPGMQTQQIFIPNALVGAIIGRGGSK 288
Query: 274 ISRIRNESGAMIKV 287
I+ IR++S I+V
Sbjct: 289 INEIRSQSSCQIRV 302
>gi|154275678|ref|XP_001538690.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415130|gb|EDN10492.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225556762|gb|EEH05050.1| KH domain RNA-binding protein [Ajellomyces capsulatus G186AR]
Length = 363
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 127/312 (40%), Gaps = 71/312 (22%)
Query: 30 RREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R E GE EG AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RTEQGEPEGPPKTDEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 82
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---- 144
+ +RV+ ++ + A +A +L+ A ++ G VA+N
Sbjct: 83 VQGVHDRVLTVTGP-----LQGTAKAYAIVAKGLLEG------APQLGMGGVASNNGTHP 131
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 VRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPE 185
Query: 205 AVLNALVEIGNQLRENPPRQVISI--SPA---------------------------YNYS 235
+ A+ EIG L ++ R ++ +PA YN +
Sbjct: 186 GIEKAVWEIGKCLIDDWQRGTGTVLYNPAVRASVGGGPLNNSLGSGASTGGYGGRSYNRT 245
Query: 236 --------------------AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
A P V + T + I +VG +IGR GS IS
Sbjct: 246 GNGADFSDQTGGYNRRSNSDAASRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKIS 305
Query: 276 RIRNESGAMIKV 287
IR SGA I +
Sbjct: 306 EIRRSSGARISI 317
>gi|260814700|ref|XP_002602052.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
gi|229287357|gb|EEN58064.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
Length = 499
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 39/208 (18%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQD-VLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
D GKR ED EG +R + V RI++ S+ G +IGK+G I+++R E KAT
Sbjct: 19 DQEGKRPAED---EGGQSNKRPRPPPPVDLRILLQSKNAGAIIGKQGLNIKRLRSEYKAT 75
Query: 83 IKIADAIARHEERVIIISSKDNDN---------VVSDAENALQQIAALILKDDDSNSEAS 133
+ + D ER++ IS+ N V+ D + Q+ KD + N E
Sbjct: 76 VTVPDCTG--PERILTISADLNTACACLLDIIPVLEDYQKHYQE-----HKDLNFNCE-- 126
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+R+L+ SQAGC+IG +G I++LR + A I + + C +
Sbjct: 127 -----------LRMLVHQSQAGCIIGRAGFKIKELREQTEANIKVYSE-----CMPG-ST 169
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENP 221
+RVV ++G + A+ +I L++ P
Sbjct: 170 ERVVALTGKPEKCVGAIKKIIELLQKAP 197
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IG+ G RI+ IRE ++A IKI + + +R+I IS DND + +A+
Sbjct: 411 QVTIPKELAGSIIGRGGSRIRTIRERSEAQIKIDEPLPGSTDRIITISG-DNDQ-IRNAQ 468
Query: 113 NALQQIAALIL 123
LQ+ ++ L
Sbjct: 469 FLLQESCSVNL 479
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 125/278 (44%), Gaps = 57/278 (20%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
+A + R ++ + +IGK G I +IR+++ A + I++ I + ER++
Sbjct: 543 QATQISMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERIL-------- 594
Query: 106 NVVSDAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
VS +A+ + LI++ +D+ AS + V TIR ++ S+ G +IG G
Sbjct: 595 -TVSGPLDAVSKAFGLIVRRINDEPFDLASVPGSKSV---TIRFIVPNSRMGSVIGKQGS 650
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
I++++ +SGA + LP ++RV+ ISG AV A+ +G+ L E+P R
Sbjct: 651 KIKEIQEASGARLTA-GEAMLP-----GSTERVLSISGVADAVHIAVYYVGSILLEHPDR 704
Query: 224 QV--ISISPAYNYSAIR-----------PAQPF---------------------VEPTSA 249
+ P + R P QPF + P S
Sbjct: 705 NANNLPYRPTAGGPSTRAGAAGANPYAAPQQPFGYGAPAAGFGGAPAGAGGAPQLPPGSQ 764
Query: 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T ++ I LVG +IG+ GS I+ IR+ S + IK+
Sbjct: 765 ---TQQIFIPNDLVGCIIGKGGSKINEIRSMSASHIKI 799
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 54/220 (24%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDND 105
++ V R IVP+ ++G VIGK+G +I++I+E + A + +A + ERV+ IS
Sbjct: 627 SKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARLTAGEAMLPGSTERVLSISG---- 682
Query: 106 NVVSDAEN-ALQQIAALILKDDDSNSE---------ASKVAAGHVAAN------------ 143
V+DA + A+ + +++L+ D N+ AG AN
Sbjct: 683 --VADAVHIAVYYVGSILLEHPDRNANNLPYRPTAGGPSTRAGAAGANPYAAPQQPFGYG 740
Query: 144 ------------------------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
T ++ I GC+IG G I ++R+ S + I I+
Sbjct: 741 APAAGFGGAPAGAGGAPQLPPGSQTQQIFIPNDLVGCIIGKGGSKINEIRSMSASHIKIM 800
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
P + A ++R+V I+G P + A+ + +L +
Sbjct: 801 EPGAG-IAAGGSGNERLVTITGPPPNIQMAVSLLYQRLEQ 839
>gi|452846671|gb|EME48603.1| hypothetical protein DOTSEDRAFT_67594 [Dothistroma septosporum
NZE10]
Length = 361
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 120/295 (40%), Gaps = 71/295 (24%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A+AQ + R IV S++ G +IGK G + +RE+T ++ + +RV+ ++
Sbjct: 38 AQAQ-LTLRAIVTSKEAGVIIGKAGQNVADLREKTGVRAGVSKVVPGVHDRVLTVT---- 92
Query: 105 DNVVSDAENALQQIA-ALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIG 159
AL IA A L D A ++ G V N IRLLI+ +Q G +IG
Sbjct: 93 --------GALTGIADAYGLVADSLVKGAPQMGMGGVVGNPNTHPIRLLISHNQMGTIIG 144
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I++++++SG +V LP ++R+V++ G + A+ EIG L +
Sbjct: 145 RQGLKIKQIQDASGVRMVAQK-EMLP-----QSTERIVEVQGTPDGIQKAVWEIGKCLVD 198
Query: 220 N--------------------PPRQVIS--ISPAYNYSAIR---------------PAQ- 241
+ PP + P Y A R PA
Sbjct: 199 DEQRGYGTVLYSPAVRVQGGGPPLNGTGAPVGPGAGYGAPRSYNRTGNGADFTGAAPAPY 258
Query: 242 ---------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P D T + I +VG +IGR GS IS IR SGA I +
Sbjct: 259 SPRRQEGPLPTTNEDGEDIQTQNISIPADMVGCIIGRGGSKISEIRKSSGARISI 313
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 33/188 (17%)
Query: 98 IISSKDNDNVV-SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
++S++D V S +N +I AL DD + A + T+R ++ +AG
Sbjct: 1 MMSAEDASPAVDSGIDNLADKIGAL--NTDDHPRTEEEYAQAQL---TLRAIVTSKEAGV 55
Query: 157 LIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
+IG +GQN+ LR +G A + + P H DRV+ ++G + + +A +
Sbjct: 56 IIGKAGQNVADLREKTGVRAGVSKVVPG-------VH--DRVLTVTGALTGIADAYGLVA 106
Query: 215 NQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
+ L + +P + P P +LIS + +G +IGR G I
Sbjct: 107 DSL--------VKGAPQMGMGGVV-GNPNTHP-------IRLLISHNQMGTIIGRQGLKI 150
Query: 275 SRIRNESG 282
+I++ SG
Sbjct: 151 KQIQDASG 158
>gi|444519891|gb|ELV12903.1| Poly(rC)-binding protein 3 [Tupaia chinensis]
Length = 300
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 117/271 (43%), Gaps = 54/271 (19%)
Query: 94 ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
ER++ I+ +DA + A ++D NS ++ A T+RL++ SQ
Sbjct: 37 ERIVTITGP------TDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQ 89
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G LIG G I+++R S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 90 CGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQI 143
Query: 214 GNQLRENPPR-QVISISP-------------AYN----YSAIRPAQ------------PF 243
+ E+PP+ I P AY Y+ P Q PF
Sbjct: 144 CVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPF 203
Query: 244 -----VEP------TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
P S T E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 204 PPLGQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE 263
Query: 293 EQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
R I G+ ++LA+ ++ + S++
Sbjct: 264 GSSERQITITGTPANISLAQYLINARLTSEV 294
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 34 GEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
G+ + P A + +P+ IG +IG++G +I +IR+ + A IKIA+A
Sbjct: 207 GQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSS 266
Query: 94 ERVIIIS 100
ER I I+
Sbjct: 267 ERQITIT 273
>gi|327263405|ref|XP_003216510.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Anolis
carolinensis]
Length = 425
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDTEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + + +I E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H SDRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSSDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + + E+P + +P P + DY F M+ +
Sbjct: 173 DRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 218
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 350 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 407
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 408 NAQYLLQ 414
>gi|348582424|ref|XP_003476976.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Cavia porcellus]
Length = 532
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 141/340 (41%), Gaps = 75/340 (22%)
Query: 6 EITVNPTVSVVTEPEPRHDVSGKRR-REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKV 64
+I+ P V + P P+ G RE G G +A+ D RI+VP++ +G +
Sbjct: 84 KISYIPDEEVSSPPPPQGAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAI 141
Query: 65 IGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122
IGKEG I+ I ++T++ + I + E+ V I ++ + + A + I ++
Sbjct: 142 IGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIM 195
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
K+ D A ++ +++L G LIG G+N++K+ + +G I I +
Sbjct: 196 QKEADETKLAEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQ 247
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSA 236
L S + +R + + G V A +A VEI +LRE ++++ P N SA
Sbjct: 248 DL----SIYNPERTITVKGAVEACASAEVEIMKKLREAFENDMLAVHQQANLIPGLNLSA 303
Query: 237 I----------------------RPAQPFVEPTSADYVT--------------------- 253
+ P PF T + Y +
Sbjct: 304 LGIFSTGLSVLPPPAGPRGAPPTAPYHPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQE 361
Query: 254 -FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
+ I VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 362 IVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG 401
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 349 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 408
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 409 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 456
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 457 VIGKGGKTVNELQNLTSAEVIV 478
>gi|302792551|ref|XP_002978041.1| hypothetical protein SELMODRAFT_108378 [Selaginella moellendorffii]
gi|300154062|gb|EFJ20698.1| hypothetical protein SELMODRAFT_108378 [Selaginella moellendorffii]
Length = 324
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 60/311 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIIISSKDNDNVV 108
R +V + G VIGK G I + ++ A I+++ + +RV ++S +
Sbjct: 17 LRFLVTNTAAGSVIGKGGSTISDFQAQSGARIQLSRNHEYFPGTSDRVAVLSGS-----L 71
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+D A Q I + I+KDD+ + S ++LL+ + G +IG G NI+K
Sbjct: 72 ADVLTAFQLIISKIIKDDNQDDTKSI---------QVKLLVPKTVCGAIIGKGGSNIKKF 122
Query: 169 RNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
S A+I + + +Q LP DR+V I G+V ++ A+ I +L E +
Sbjct: 123 VEDSQASIKLSSQDQLLPGVI-----DRIVTIGGNVDQIIKAVTLILTKLTEESSYTETT 177
Query: 228 ISPAYNYSAIRPAQPFV--------------------EPTSADYV-----TFEMLISESL 262
+P Y P PF+ P YV + + I +
Sbjct: 178 STPLV-YPGTGPT-PFIVRCVYHASPGLQNLRRNGPGPPMPVAYVGALTSSVTIGIPDEH 235
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVALAKQRVDEY 318
+G ++GR G + ++ SGA IKV +G+ ++R + GS + + A ++
Sbjct: 236 IGFILGRAGKTLQELQQSSGAKIKV-SDRGDFVTGTEYRKVTMIGSGEAIQAA-----QF 289
Query: 319 IYSQLIQQAGA 329
+ +Q +QQ+ A
Sbjct: 290 LLTQKVQQSLA 300
>gi|113931242|ref|NP_001039068.1| poly(rC) binding protein 2 [Xenopus (Silurana) tropicalis]
gi|89273953|emb|CAJ81328.1| poly(rC) binding protein 3 [Xenopus (Silurana) tropicalis]
Length = 362
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 118/272 (43%), Gaps = 46/272 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 12 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 70
Query: 109 SDAENALQQIAALILKDDDSNSEAS---KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
++QI ++L+ + K A+G + + AG Q
Sbjct: 71 ----QCVKQICVVMLESPPKGATIPYRPKPASGPI-------IFAGGQV---------RA 110
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV-LNALVEIGNQLRENPPRQ 224
E + S+G V+ P P A +Q +P L L ++ ++ P
Sbjct: 111 ETILASAGNHTVLAQPQPAPAFA--------IQGQYAIPHPDLTKLHQLA--MQHTPFTP 160
Query: 225 VISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAM 284
+ +P + P PTS+ E+ I L+G +IGR GS I+ IR SGA
Sbjct: 161 LGQTTPGF------PGLDATSPTSSH----ELTIPNDLIGCIIGRQGSKINEIRQMSGAQ 210
Query: 285 IKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
IK+ R + GS ++LA+ ++
Sbjct: 211 IKIANASEGNGERQVTITGSPANISLAQYLIN 242
>gi|405120191|gb|AFR94962.1| cytoplasmic protein [Cryptococcus neoformans var. grubii H99]
Length = 365
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 13/183 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P + + R +V +++ G +IGK G I IR+ T ++ + ++RV+ ++
Sbjct: 22 PDAQGAEHQLSLRSLVSTKEAGIIIGKSGATIATIRDSTGVKAGVSKVVQGVQDRVLSVT 81
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
D + V S A ++A L+L+ S+S G +IRLLI+ + G +IG
Sbjct: 82 G-DLEGVAS----AYAEVARLLLETPLSDSSLPPPPVGSF--TSIRLLISHNLMGTVIGR 134
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
SG I+++++ SGA +V + LP ++RVV++ G V A+ A++EIG L E+
Sbjct: 135 SGLKIKQIQDMSGARMVA-SKEMLP-----QSTERVVEVQGSVDAIKTAVLEIGKCLLED 188
Query: 221 PPR 223
R
Sbjct: 189 WDR 191
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 23/140 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
++R L++ +AG +IG SG I +R+S+G + Q DRV+ ++GD+
Sbjct: 32 SLRSLVSTKEAGIIIGKSGATIATIRDSTGVKAGVSKVVQ-------GVQDRVLSVTGDL 84
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
V +A E+ L E P + S++ P P + + +LIS +L+
Sbjct: 85 EGVASAYAEVARLLLETP----------LSDSSLPP------PPVGSFTSIRLLISHNLM 128
Query: 264 GGLIGRCGSNISRIRNESGA 283
G +IGR G I +I++ SGA
Sbjct: 129 GTVIGRSGLKIKQIQDMSGA 148
>gi|157108094|ref|XP_001650073.1| heterogeneous nuclear ribonucleoprotein k [Aedes aegypti]
gi|108868581|gb|EAT32806.1| AAEL014959-PA [Aedes aegypti]
Length = 430
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 26/195 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
+R++ + R+++PS+ G +IGK GH IQK+R E +A + + D ERV+ I
Sbjct: 31 KRSRKDEEEVRLLIPSKMAGAIIGKAGHNIQKLRTEYQAQVNVGDCTG--PERVLTIG-- 86
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D E + + ++K D E +R+L+ S AGC+IG G
Sbjct: 87 ------GDME-TITNVVKDVMKHLDKAGENEY---------ELRILVHQSLAGCVIGRGG 130
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++L++ G + I + N P +DR+ Q+ G L AL +I ++ P
Sbjct: 131 TKIKELKDQIGCRLKIFS-NIAP-----QSTDRIAQVIGTEDQCLTALNDIIGLIQGTPI 184
Query: 223 RQVISISPAYNYSAI 237
+ + +NY +
Sbjct: 185 KGPVHNYDPHNYDDM 199
>gi|170592745|ref|XP_001901125.1| KH domain containing protein [Brugia malayi]
gi|158591192|gb|EDP29805.1| KH domain containing protein [Brugia malayi]
Length = 354
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 39/226 (17%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
+GKR+R+D S K A + L R++V SR G +IGK+G ++ I+ E AT+
Sbjct: 48 TAGKRQRQD-----SYQKALADGKYEL-RLLVTSRGAGAIIGKKGESVKNIQTECDATVS 101
Query: 85 IADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
+ D ++ ERV+ +V+ EN ++ + +I + D+ + ++ +
Sbjct: 102 VPD--SQTPERVV--------QLVAAVENVVKCVEMIIARIDEVHDNQNR-------DSE 144
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++L+ S AG +IG G I++LR +G + + + ++R++QI+G
Sbjct: 145 LKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYSE------CCPQSTERIIQINGKPE 198
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
++ LV I N L+E P + P+ Y +I F +P A+
Sbjct: 199 KIVACLVTIINTLKEIPIK-----GPSRPYESI-----FFDPMVAN 234
>gi|321257616|ref|XP_003193652.1| cytoplasm protein [Cryptococcus gattii WM276]
gi|317460122|gb|ADV21865.1| Cytoplasm protein, putative [Cryptococcus gattii WM276]
Length = 367
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 13/183 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P + + R +V +++ G +IGK G I IR+ T ++ + ++RV+ ++
Sbjct: 22 PDAQGAEHQLSLRSLVSTKEAGIIIGKSGATIAAIRDSTGVKAGVSKVVQGVQDRVLSVT 81
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
D + V S A ++A L+L+ S+S G +IRLLI+ + G +IG
Sbjct: 82 G-DLEGVAS----AYAEVARLLLETPLSDSSLPPPPVGSF--TSIRLLISHNLMGTVIGR 134
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
SG I+++++ SGA +V + LP ++RVV++ G V A+ A++EIG L E+
Sbjct: 135 SGLKIKQIQDMSGARMVA-SKEMLP-----QSTERVVEVQGSVDAIKTAVLEIGKCLLED 188
Query: 221 PPR 223
R
Sbjct: 189 WDR 191
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 23/140 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
++R L++ +AG +IG SG I +R+S+G + Q DRV+ ++GD+
Sbjct: 32 SLRSLVSTKEAGIIIGKSGATIAAIRDSTGVKAGVSKVVQ-------GVQDRVLSVTGDL 84
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
V +A E+ L E P + S++ P P + + +LIS +L+
Sbjct: 85 EGVASAYAEVARLLLETP----------LSDSSLPP------PPVGSFTSIRLLISHNLM 128
Query: 264 GGLIGRCGSNISRIRNESGA 283
G +IGR G I +I++ SGA
Sbjct: 129 GTVIGRSGLKIKQIQDMSGA 148
>gi|357124311|ref|XP_003563844.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 666
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 18/173 (10%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
+++FRI+ P+ + ++G ++ ++ E +++ D + +ER +II+S++ D+
Sbjct: 341 EIIFRILCPNDKANNLVGSRDGILEMLQVEVGVDVRLTDLVVGSDERTVIITSREGPDHE 400
Query: 108 VSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
+ A+ AL I I L D+ N T RLL+ S+ C G G ++
Sbjct: 401 LFPAQEALLHIQTHIVDLGPDNDN------------IITTRLLVPSSEVACFEGRDG-SL 447
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
++ + A + IL +LP CA ESD ++QI G + A +AL+++ ++R
Sbjct: 448 SDIQRQTSANVQILPREELPSCAL--ESDELIQIVGGIRAARSALMQVTTKIR 498
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS---KDN 104
Q FRI+ P K G I K ++++ A I I A RVI ++ +D
Sbjct: 91 QATSFRILCPE---SKTYGFPASFIIKAQDDSGAIITIHAPFAGDPVRVIEMADGVPRDV 147
Query: 105 DN---VVSDAENALQQIAALILKD--DDSNSEASKVAAGHVAAN----TIRLLIAGSQAG 155
D + S A+ AL + IL+ DD + + G A + T RL++ G
Sbjct: 148 DGRPPMFSPAQEALIMVHRRILETEPDDGDEDGEYGPRGKDARDRGKVTTRLVVPRLHVG 207
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIG 214
CL+G G+ IE++R+ + I IL +Q P C S S+ VVQI G+ V A+ I
Sbjct: 208 CLLGKGGKIIEQMRSETKTHIRILPRDQNTPRCVSL--SEEVVQIVGEGNCVKKAVAIIS 265
Query: 215 NQLREN 220
++L+E+
Sbjct: 266 DRLKES 271
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 32 EDGEI--EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
EDGE G D + R K V R++VP +G ++GK G I+++R ETK I+I
Sbjct: 178 EDGEYGPRGKDARDRGK---VTTRLVVPRLHVGCLLGKGGKIIEQMRSETKTHIRI 230
>gi|402592326|gb|EJW86255.1| hypothetical protein WUBG_02833 [Wuchereria bancrofti]
Length = 313
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 39/226 (17%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
+GKR+R+D S K A + L R++V SR G +IGK+G ++ I+ E AT+
Sbjct: 21 TAGKRQRQD-----SYQKALADGKYEL-RLLVTSRGAGAIIGKKGESVKNIQTECDATVS 74
Query: 85 IADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
+ D ++ ERV+ +V+ EN ++ + +I + D+ + + +
Sbjct: 75 VPD--SQTPERVV--------QLVAAVENVVKCVEMIIARIDEVHDNQDR-------DSE 117
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++L+ S AG +IG G I++LR +G + + + C + E R++QI+G
Sbjct: 118 LKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYS----ECCPQSTE--RIIQINGKPE 171
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
++ LV I N L+E P + P+ Y +I F +P A+
Sbjct: 172 KIVACLVTIINTLKEIPIK-----GPSRPYESI-----FFDPMVAN 207
>gi|260941532|ref|XP_002614932.1| hypothetical protein CLUG_04947 [Clavispora lusitaniae ATCC 42720]
gi|238851355|gb|EEQ40819.1| hypothetical protein CLUG_04947 [Clavispora lusitaniae ATCC 42720]
Length = 370
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 124/275 (45%), Gaps = 34/275 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
FR++V +++ G +IG+ G I IR+ET I+ ER++ +S +V A
Sbjct: 19 FRVLVSAKEAGCLIGQNGAVIDSIRDETATRAGISQLRPGTHERILTVS-----GLVDSA 73
Query: 112 ENALQQIAALILKDDDSN---------SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
AL A ++ + S++A +R+++ SQ G LIG G
Sbjct: 74 AKALSYFAQALVNASSETPFSYSYFPLKQMSRIANVEGQTTVLRMMVPNSQIGTLIGARG 133
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE--N 220
I++++ ++++ ++ L S S+R+V++ G V + +A+ +G L +
Sbjct: 134 LRIQQIQRQCNVSMIV---SKSFLAGS---SERLVELQGTVDNLYDAVRIVGRCLLSGAS 187
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ + P + A +P T+ + V+F + +VG LIG+ GS I +R
Sbjct: 188 SSEETVLYVPRPSSKAAEVPKP---ATTQETVSFR----DDIVGALIGKHGSRIQGVRKV 240
Query: 281 SGAMIKVY--GGKGEQKHRHIQFGGSAQQVALAKQ 313
SGA I + G GE R GS V AK+
Sbjct: 241 SGATIAISEEDGTGE---RSFTISGSPSAVGKAKR 272
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDN 104
+ Q + R++VP+ QIG +IG G RIQ+I+ + ++ ++ + +A ER++ +
Sbjct: 110 EGQTTVLRMMVPNSQIGTLIGARGLRIQQIQRQCNVSMIVSKSFLAGSSERLVELQ---- 165
Query: 105 DNVVSDAENALQQIAALILKDDDSNSE--------ASKVAAGHVAANTIRLL-IAGSQAG 155
V + +A++ + +L S+ E +SK A A T + G
Sbjct: 166 -GTVDNLYDAVRIVGRCLLSGASSSEETVLYVPRPSSKAAEVPKPATTQETVSFRDDIVG 224
Query: 156 CLIGMSGQNIEKLRNSSGATIVI 178
LIG G I+ +R SGATI I
Sbjct: 225 ALIGKHGSRIQGVRKVSGATIAI 247
>gi|58266068|ref|XP_570190.1| cytoplasm protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134110914|ref|XP_775921.1| hypothetical protein CNBD3280 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258587|gb|EAL21274.1| hypothetical protein CNBD3280 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226423|gb|AAW42883.1| cytoplasm protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 365
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P + R +V +++ G +IGK G I IR+ T ++ + ++RV+ ++
Sbjct: 22 PDAHGAEHQLSLRSLVSTKEAGIIIGKSGATIATIRDSTGVKAGVSKVVQGVQDRVLSVT 81
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
D + V S A ++A L+L+ S+S G +IRLLI+ + G +IG
Sbjct: 82 G-DLEGVAS----AYAEVARLLLETPLSDSSLPPPPVGSF--TSIRLLISHNLMGTVIGR 134
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
SG I+++++ SGA +V + LP ++RVV++ G V A+ A++EIG L E+
Sbjct: 135 SGLKIKQIQDMSGARMVA-SKEMLP-----QSTERVVEVQGSVDAIKTAVLEIGKCLLED 188
Query: 221 PPR 223
R
Sbjct: 189 WDR 191
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 23/140 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
++R L++ +AG +IG SG I +R+S+G + Q DRV+ ++GD+
Sbjct: 32 SLRSLVSTKEAGIIIGKSGATIATIRDSTGVKAGVSKVVQ-------GVQDRVLSVTGDL 84
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
V +A E+ L E P + S++ P P + + +LIS +L+
Sbjct: 85 EGVASAYAEVARLLLETP----------LSDSSLPP------PPVGSFTSIRLLISHNLM 128
Query: 264 GGLIGRCGSNISRIRNESGA 283
G +IGR G I +I++ SGA
Sbjct: 129 GTVIGRSGLKIKQIQDMSGA 148
>gi|225682425|gb|EEH20709.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 364
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 71/313 (22%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
R E G+ EG AQ +L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RVNEQGDPEGPPKSEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK 82
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT--- 144
+ +RV+ ++ + A A +A +L+ A ++ G V +N
Sbjct: 83 VVQGVHDRVLTVTGP-----LQGAAKAYAIVAKSLLEG------APQLGMGGVVSNNGTH 131
Query: 145 -IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 PVRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTP 185
Query: 204 PAVLNALVEIGNQLRENPPRQVISI--SPA---------------------------YN- 233
+ A+ EIG L ++ R ++ +PA YN
Sbjct: 186 EGIEKAVWEIGKCLIDDWQRGTGTVLYNPAVRASVGGAPINNSLGSGGSSGGYGGRSYNR 245
Query: 234 -------------YS------AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
YS A P V + T + I +VG +IGR GS I
Sbjct: 246 TGNGADFSDQTGGYSRRSNSDAANRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKI 305
Query: 275 SRIRNESGAMIKV 287
S IR SGA I +
Sbjct: 306 SEIRRSSGARISI 318
>gi|295660901|ref|XP_002791006.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280933|gb|EEH36499.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 364
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 71/313 (22%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
R E G+ EG AQ +L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RVNEQGDPEGPPKSEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK 82
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT--- 144
+ +RV+ ++ + A A +A +L+ A ++ G V +N
Sbjct: 83 VVQGVHDRVLTVTGP-----LQGAAKAYAIVAKSLLEG------APQLGMGGVVSNNGTH 131
Query: 145 -IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 PVRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTP 185
Query: 204 PAVLNALVEIGNQLRENPPRQVISI--SPA---------------------------YN- 233
+ A+ EIG L ++ R ++ +PA YN
Sbjct: 186 EGIEKAVWEIGKCLIDDWQRGTGTVLYNPAVRASVGGAPINNSLGSGASSGGYGGRSYNR 245
Query: 234 -------------YS------AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
YS A P V + T + I +VG +IGR GS I
Sbjct: 246 TGNGADFSDQTGGYSRRSNSDAANRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKI 305
Query: 275 SRIRNESGAMIKV 287
S IR SGA I +
Sbjct: 306 SEIRRSSGARISI 318
>gi|332019831|gb|EGI60292.1| Poly(rC)-binding protein 3 [Acromyrmex echinatior]
Length = 566
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 24/182 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--------TIRLLIAGSQAGCLIGMS 161
+ + + K ++ S+ V T+RL++ SQ G LIG
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDVPGSGAGGGGGVSRPPITLRLIVPASQCGSLIGKG 127
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+P
Sbjct: 128 GSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESP 181
Query: 222 PR 223
P+
Sbjct: 182 PK 183
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRL++ G + G +IG G+ +++ R SGA I I + +R+V ++G
Sbjct: 19 TIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINI---------SDGSCPERIVTVTGPT 69
Query: 204 PAVLNALVEIGNQLRENPPR--QVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISES 261
++ A I + E + V RP +T +++ S
Sbjct: 70 NSIFKAFTLICKKFEEWCSQFHDVPGSGAGGGGGVSRPP-----------ITLRLIVPAS 118
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ GS I IR +GA I+V
Sbjct: 119 QCGSLIGKGGSKIKEIREVTGASIQV 144
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGS 304
+A+ T EM + L+G +IG+ G+ I+ IR SGAMI++ +G R I G+
Sbjct: 367 AANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGN 426
Query: 305 AQQVALAKQRVD 316
VALA+ ++
Sbjct: 427 PDAVALAQYLIN 438
>gi|147789222|emb|CAN69137.1| hypothetical protein VITISV_022037 [Vitis vinifera]
Length = 587
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A V FR++ + +IG VIGK G +++++ +T A I++ D+ + + RVI++ + + N
Sbjct: 48 AGHVAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVN 107
Query: 107 VVSDAENALQQIAA-----LILKDDDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLIG 159
+ + +++ A +L+ + E + V G + RLL SQ G +IG
Sbjct: 108 RRIALQGSSEEVEASAAQEAVLRVFERILEVAAVVDGVPPGGVVSCRLLAETSQVGSVIG 167
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
G+ +EK+R SG+ I +L +LP CA++ +D +V+ SG +
Sbjct: 168 KGGKVVEKIRRESGSKIKVLTAEKLPTCAAS--TDEMVEHSGSL 209
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 46/168 (27%)
Query: 137 AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA--------------TIVILAPN 182
AGHVA RLL S+ G +IG SG +++L++ +GA I+++AP
Sbjct: 48 AGHVA---FRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPA 104
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNAL---VEIGNQLRENPPRQVISISPAYNYSAIRP 239
+ + S V+ S AVL +E+ + PP V+S
Sbjct: 105 SVNRRIALQGSSEEVEASAAQEAVLRVFERILEVAAVVDGVPPGGVVSC----------- 153
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+L S VG +IG+ G + +IR ESG+ IKV
Sbjct: 154 ---------------RLLAETSQVGSVIGKGGKVVEKIRRESGSKIKV 186
>gi|74177637|dbj|BAE38921.1| unnamed protein product [Mus musculus]
Length = 464
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L LK D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLKSDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLKSDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|355709455|gb|AES03597.1| poly binding protein 4 [Mustela putorius furo]
Length = 206
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 94/174 (54%), Gaps = 19/174 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 29 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 77
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 78 TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 137
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 138 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 185
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 28 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 78
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
AV +A+ I +L E+ + +PA + RP VT ++I S
Sbjct: 79 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRPP-----------VTLRLVIPASQC 122
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR +GA ++V G
Sbjct: 123 GSLIGKAGTKIKEIRETTGAQVQVAG 148
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 111 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 170
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL+
Sbjct: 171 -----CVRQICAVILES 182
>gi|395516948|ref|XP_003762645.1| PREDICTED: poly(rC)-binding protein 4 [Sarcophilus harrisii]
Length = 338
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 36 IEGSDPKRRAKAQ---DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
+ GSDP + + + R+I+ +++G +IGK+G +++IRE++ A I I++
Sbjct: 1 MSGSDPGLEEEPELSITLTLRMIMHGKEVGSIIGKKGETVKRIREQSCARITISEG---- 56
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIA 150
S + ++ + A+ ++I D + G ++ T+RL+I
Sbjct: 57 -------SCPERITTITGSTGAVFHAVSMIAFKLDEDLCTGPPNGGSISKPPVTLRLVIP 109
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
SQ G LIG +G I+++R ++GA + + A + LP + ++R V +SG A++ +
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCV 163
Query: 211 VEIGNQLRENPPR 223
+I + E+PP+
Sbjct: 164 RQICAVILESPPK 176
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+++ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMIMHGKEVGSIIGKKGETVKRIREQSCARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
AV +A+ I +L E+ + P S +P VT ++I S
Sbjct: 70 GAVFHAVSMIAFKLDED-----LCTGPPNGGSISKPP-----------VTLRLVIPASQC 113
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR +GA ++V G
Sbjct: 114 GSLIGKAGTKIKEIRETTGAQVQVAG 139
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ----N 164
++QI A+IL+ + H + + +L++ +Q + G G
Sbjct: 162 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSANQGFSVQGQYGTVTPAE 212
Query: 165 IEKLRNSSGATIVILAPNQLP-LCASAHESDRVVQISGDV 203
+ KL+ SG + +P+ +P L SA S + + DV
Sbjct: 213 VSKLQQLSGHPVPFASPSVVPGLDPSAQTSSQEFLVPNDV 252
>gi|417409319|gb|JAA51170.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 283
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 75
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 76 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 131
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 132 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 185
Query: 224 QVISI 228
+V++I
Sbjct: 186 RVMTI 190
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I + + +R++ ++G
Sbjct: 24 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI---------SEGNCPERIITLTGPT 74
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 75 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 118
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q V +++ +
Sbjct: 119 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLET 178
Query: 323 LIQ 325
L Q
Sbjct: 179 LSQ 181
>gi|387915114|gb|AFK11166.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 436
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 24/235 (10%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR ED + E + + R Q V R+++ S+ G VIGK G I+ +R + A++ + D
Sbjct: 26 KRPAEDHDEEQAFKRSRNNDQCVELRLLLQSKNAGAVIGKGGKNIKSLRTDYNASVSVPD 85
Query: 88 AIARHEERVIIISS--KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
+ ER++ I++ + +++S L+++ + E+ + G +
Sbjct: 86 SSG--PERILSINADIETIGDILSKIIPTLEEVRCVHFH---HLQESYQHYKGKDFDCEL 140
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
R+L+ SQAG +IG+ G I++LR S+ TI + H +DRVV + G
Sbjct: 141 RMLVHQSQAGSIIGVKGVKIKELRESTQTTIKLFQE------CCPHSTDRVVLLGGKPDR 194
Query: 206 VLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I L E+P + +P P + DY F M+ E
Sbjct: 195 VVECIKIIMGLLSESPVK-----------GRAQPYDPNFYDETYDYGGFTMMFDE 238
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 362 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ--IQ 419
Query: 110 DAENALQQIAALIL 123
+A+ LQ +
Sbjct: 420 NAQYLLQNSCSSFF 433
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 21/165 (12%)
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
+D +A K + + +RLL+ AG +IG G+NI+ LR A++ +
Sbjct: 30 EDHDEEQAFKRSRNNDQCVELRLLLQSKNAGAVIGKGGKNIKSLRTDYNASVSV------ 83
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFV 244
+ +R++ I+ D+ + + L +I L E + +Y +
Sbjct: 84 ---PDSSGPERILSINADIETIGDILSKIIPTLEEVRCVHFHHLQESYQHYK-------- 132
Query: 245 EPTSADY-VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
D+ ML+ +S G +IG G I +R + IK++
Sbjct: 133 ---GKDFDCELRMLVHQSQAGSIIGVKGVKIKELRESTQTTIKLF 174
>gi|261197389|ref|XP_002625097.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239595727|gb|EEQ78308.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239606718|gb|EEQ83705.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327358051|gb|EGE86908.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 363
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 127/312 (40%), Gaps = 71/312 (22%)
Query: 30 RREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R + GE +G AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RNDQGEADGPPKTEEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 82
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---- 144
+ +RV+ ++ + A +A +L+ A ++ G V +NT
Sbjct: 83 VQGVHDRVLTVTGP-----LQGTAKAYAIVAKGLLEG------APQLGMGGVVSNTGTHP 131
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 VRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPE 185
Query: 205 AVLNALVEIGNQLRENPPRQVISI--SPA---------------------------YNYS 235
+ A+ EIG L ++ R ++ +PA YN +
Sbjct: 186 GIEKAVWEIGKCLIDDWQRGTGTVLYNPAVRASVGGGPMNNSLGSGTAAGGYGGRSYNRT 245
Query: 236 --------------------AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
A P V + T + I +VG +IGR GS IS
Sbjct: 246 GNGADFSDQTGGYNRRSNSDAANRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKIS 305
Query: 276 RIRNESGAMIKV 287
IR SGA I +
Sbjct: 306 EIRRSSGARISI 317
>gi|440907529|gb|ELR57670.1| RNA-binding protein Nova-2, partial [Bos grunniens mutus]
Length = 298
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 139/291 (47%), Gaps = 26/291 (8%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 4 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 63
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 64 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 123
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP-P 222
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 124 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDPQS 178
Query: 223 RQVISISPAYNYSAIRPAQP---FVEPTSADYVT--FEMLISESLVGGLIGRCGSNISRI 277
++IS A + + P E +A+ E+ + E+LVG ++G+ G +
Sbjct: 179 SSCLNISYANVAGPVANSNPTGLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY 238
Query: 278 RNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVALAKQRVDEYIYSQLI 324
+ +GA I++ KGE ++R + GS A + +Y+ SQ +
Sbjct: 239 QELTGARIQI-SKKGEFLPGTRNRRVTITGSP-----AATQAAQYLISQRV 283
>gi|392347468|ref|XP_003749842.1| PREDICTED: poly(rC)-binding protein 1 [Rattus norvegicus]
Length = 516
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 174 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 226
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 227 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 282
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 283 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 336
Query: 224 QVISI 228
+V++I
Sbjct: 337 RVMTI 341
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 258 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 312
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 313 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 361
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 362 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQQS-----HF 408
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 409 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 468
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 469 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 510
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I + + +R++ ++G
Sbjct: 175 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI---------SEGNCPERIITLTGPT 225
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 226 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 269
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 270 GSLIGKGGCKIKEIRESTGAQVQVAG 295
>gi|307204634|gb|EFN83256.1| Heterogeneous nuclear ribonucleoprotein K [Harpegnathos saltator]
Length = 139
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 24/151 (15%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR E G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 2 KREAETGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 61
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 62 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 105
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+R+L+ SQAGC+IG G I++LR S
Sbjct: 106 --DVRMLVHQSQAGCIIGKGGLKIKELREVS 134
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 32/139 (23%)
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
+ +RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D
Sbjct: 28 DELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSD 78
Query: 203 VPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESL 262
+P VL L E+ L EN R +D + ML+ +S
Sbjct: 79 LPTVLQVLNEVVPNLEENGSRH-----------------------GSDEIDVRMLVHQSQ 115
Query: 263 VGGLIGRCGSNISRIRNES 281
G +IG+ G I +R S
Sbjct: 116 AGCIIGKGGLKIKELREVS 134
>gi|158293805|ref|XP_315123.4| AGAP005015-PA [Anopheles gambiae str. PEST]
gi|157016622|gb|EAA10478.5| AGAP005015-PA [Anopheles gambiae str. PEST]
Length = 447
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 26/195 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSK 102
+R ++++ R+++PS+ G +IGK GH IQK+R E +A + + D ERV+ I
Sbjct: 49 KRMRSEEQEVRLLIPSKMAGAIIGKGGHNIQKLRTEYQAQVNVGDCTG--PERVLTIGG- 105
Query: 103 DNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
D + V ++ ++ + D ++E +R+LI S AGC+IG G
Sbjct: 106 DMETVTKVVKDVMKHL------DRAGDNEYE-----------LRILIHLSLAGCVIGRGG 148
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I+++++ G + I + +P +DR+ Q+ G L L EI ++ P
Sbjct: 149 SKIKEIKDEIGCRLKIFS--NIP----PQSTDRIAQVIGSEEQCLKTLNEIIKLIKGTPI 202
Query: 223 RQVISISPAYNYSAI 237
+ + +NY +
Sbjct: 203 KGPVHNYDPHNYDDM 217
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 36/144 (25%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI AG +IG G NI+KLR A + + +RV+ I GD+
Sbjct: 58 VRLLIPSKMAGAIIGKGGHNIQKLRTEYQAQVNV---------GDCTGPERVLTIGGDME 108
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
V + ++ L + + +LI SL G
Sbjct: 109 TVTKVVKDVMKHL---------------------------DRAGDNEYELRILIHLSLAG 141
Query: 265 GLIGRCGSNISRIRNESGAMIKVY 288
+IGR GS I I++E G +K++
Sbjct: 142 CVIGRGGSKIKEIKDEIGCRLKIF 165
>gi|395333911|gb|EJF66288.1| hypothetical protein DICSQDRAFT_159257 [Dichomitus squalens
LYAD-421 SS1]
Length = 405
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 54/296 (18%)
Query: 20 EPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET 79
E R D + G GS P A ++ R ++ ++ +IGK G + +IRE++
Sbjct: 76 ESRGDSATASTAPGGTGSGSTP-----AANIHMRCLIVTQDASIIIGKGGSHVNEIREKS 130
Query: 80 KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGH 139
A + ++++I + ER++ NV + + ++ + +D + V
Sbjct: 131 GARVMVSESIPGNPERIL--------NVSGPLDAVSKAFGLIVRRINDEPFDKPSVPGSR 182
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
A TI+ +I S+ G +IG G I++++++SGA + + LP ++R++ +
Sbjct: 183 --AVTIKFMIPNSRMGSVIGKGGTKIKEIQDASGARLN-ASEGMLP-----GSTERLLSV 234
Query: 200 SGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA------------------- 240
SG A+ A IGN L E R P+ N+S RP
Sbjct: 235 SGVADAIHIATYYIGNILIEANERM-----PSSNHSTYRPTSQSRRPPYMGSSYVPGYAP 289
Query: 241 ---------QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P+ + T ++ I LVG +IG+ G+ I+ IR+ S + IK+
Sbjct: 290 AAAAAATAHNPYAGGPPSQLQTQQIYIPNDLVGCIIGKGGAKINEIRHMSASQIKI 345
>gi|332027896|gb|EGI67951.1| Heterogeneous nuclear ribonucleoprotein K [Acromyrmex echinatior]
Length = 172
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 24/159 (15%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR E G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 2 KREAEAGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 61
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVA 141
+ D ERV+ IS SD LQ + ++ L+++ S + ++
Sbjct: 62 IVPDCPG--PERVLTIS--------SDLPTVLQVLNEVVPNLEENGSRHGSDEI------ 105
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+R+L+ SQAGC+IG +G I++LR S + I+
Sbjct: 106 --DVRMLVHQSQAGCIIGKAGLKIKELREVSHSFSTIMT 142
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 32/139 (23%)
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
+ +RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D
Sbjct: 28 DELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSD 78
Query: 203 VPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESL 262
+P VL L E+ L EN R +D + ML+ +S
Sbjct: 79 LPTVLQVLNEVVPNLEENGSRH-----------------------GSDEIDVRMLVHQSQ 115
Query: 263 VGGLIGRCGSNISRIRNES 281
G +IG+ G I +R S
Sbjct: 116 AGCIIGKAGLKIKELREVS 134
>gi|432934409|ref|XP_004081928.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Oryzias latipes]
Length = 600
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 128/305 (41%), Gaps = 73/305 (23%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEER 95
GS R + QD RI+VP++ +G +IGKEG I+ + ++T++ + I + E+
Sbjct: 176 GSYSSPRPRQQDFPLRILVPTQFVGAIIGKEGLTIKNVTKQTQSKVDIHRKENAGAAEKP 235
Query: 96 VIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAG 155
+ I S+ + +A + I ++ K+ + ++ +++L S G
Sbjct: 236 ITIHSTPEG------CSSACRMILDIMQKEANETKTNEEIP--------LKILAHNSLVG 281
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
LIG G+N++K+ +G I I + L +C +R + + G + A A VEI
Sbjct: 282 RLIGKEGRNLKKIEEETGTKITISSLQDLTIC----NPERTITVKGSLEACCKAEVEIMK 337
Query: 216 QLRENPPRQVISIS------PAYNYSA----------IRPA---------------QPF- 243
+L+E + +I+ P N +A + PA PF
Sbjct: 338 KLKEAYENDIAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGSRGAVPPMPPAGYNPFL 397
Query: 244 -----------VEPTSA----------DYVTFEMLISESLVGGLIGRCGSNISRIRNESG 282
V PTSA + + I VG LIG+ G +I ++ + +G
Sbjct: 398 SHSSHLSGLYGVPPTSAIPHQHSQQAPEQEVVYLFIPTQAVGALIGKKGQHIKQLAHFAG 457
Query: 283 AMIKV 287
A IK+
Sbjct: 458 ASIKI 462
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 21/161 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISS 101
++A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 421 QQAPEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG 479
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A+ Q LK+++ S +V + + S AG +IG
Sbjct: 480 ------TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKG 527
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISG 201
G+ + +L+N + A VI+ +Q+P E+D V V+ISG
Sbjct: 528 GKTVNELQNLTSAE-VIVPRDQIP-----DENDEVFVKISG 562
>gi|410227970|gb|JAA11204.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 153 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 201
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 202 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQ-----QSHF 248
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 249 AMMHGGTGFAGIDSSSPEVKGYWAGLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 308
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 309 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
>gi|218200638|gb|EEC83065.1| hypothetical protein OsI_28176 [Oryza sativa Indica Group]
gi|222640076|gb|EEE68208.1| hypothetical protein OsJ_26373 [Oryza sativa Japonica Group]
Length = 431
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 143/336 (42%), Gaps = 89/336 (26%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
+++ R++ P+ +IG VIGK G I+ IR+E+ A I + D+ EE +I I+S +
Sbjct: 121 ELVLRVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNE---AT 177
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
DA++A + A L+L+ ++ KV GCLIG G + +
Sbjct: 178 DDAKSAAVE-AVLLLQSKINDDNEGKV------------------IGCLIGKGGSIVNDM 218
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ---- 224
R+ + A I I + + P AS+ SD +V++ G+V + +ALV+I +LR++ R
Sbjct: 219 RSKTKAAIYI-SKGEKPRKASS--SDELVEVFGEVENLRDALVQIVLRLRDDVLRDSVDR 275
Query: 225 ----------VISISPAYNYSAIRPA-QPF--------------------VEPTSADY-- 251
V + P Y S PA P+ V P S+ Y
Sbjct: 276 QNSEKDGKLTVATTDPLYASSYPLPALLPYRQQITPLGYDHRGDIERGLEVYPHSSLYGY 335
Query: 252 -------------------------VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
EM I S + ++G+ G+N+ I SGA I+
Sbjct: 336 SSLQAIDDGYSAVSSYASKGYGGRPPHMEMTIPASGLSKVMGKHGTNLDNIIKISGAHIE 395
Query: 287 VYGGKGEQKHRHI-QFGGSAQQVALAKQRVDEYIYS 321
+ K +H H+ + G+ +Q A+ + +I S
Sbjct: 396 IIESK-SSRHGHVARISGTTEQKQSAENLIKAFIMS 430
>gi|354484184|ref|XP_003504270.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Cricetulus griseus]
gi|344239809|gb|EGV95912.1| Insulin-like growth factor 2 mRNA-binding protein 2 [Cricetulus
griseus]
Length = 530
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 125/294 (42%), Gaps = 68/294 (23%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDN 106
D RI+VP++ +G +IGKEG I+ I ++T++ + I + E+ V I ++ + +
Sbjct: 124 DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS 183
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A + I ++ K+ + A +V +++L G LIG G+N++
Sbjct: 184 ------EACRMILEIMQKEAEDTKLAEEVP--------LKILAHNGLVGRLIGKEGRNLK 229
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
K+ + +G I I + L S + +R + + G + A NA +EI +LRE ++
Sbjct: 230 KIEHETGTKITISSLQDL----SIYNPERTITVKGTIDACANAEMEIMKKLREAFENDML 285
Query: 227 SIS------PAYNYSAI-----------RPAQPFVEPTSADYVTF--------------- 254
+++ P N SA+ PA P P S Y F
Sbjct: 286 AVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGVPPSVPYHPFASHSGYFPNMYPHHH 345
Query: 255 ----------------EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
+ I VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 346 FGPFPHHHSYPEQETVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG 399
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A ER++II+
Sbjct: 363 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQF----- 417
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
A +I + +++ N + H+ + S AG +IG G+ + +L+N +
Sbjct: 418 KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIGKGGKTVNELQNLT 470
Query: 173 GATIVI 178
A +++
Sbjct: 471 SAEVIV 476
>gi|307199010|gb|EFN79734.1| Poly(rC)-binding protein 3 [Harpegnathos saltator]
Length = 469
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 15 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 67
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--------TIRLLIAGSQAGCLIGMS 161
+ + + K ++ S+ + G T+RL++ SQ G LIG
Sbjct: 68 ---SIFKAFTLICKKFEEWCSQFHDIQGGGAGGGGGVSRPPITLRLIVPASQCGSLIGKG 124
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+P
Sbjct: 125 GSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESP 178
Query: 222 PR 223
P+
Sbjct: 179 PK 180
>gi|6754994|ref|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus]
gi|62751650|ref|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus]
gi|126723096|ref|NP_001075593.1| poly(rC)-binding protein 1 [Oryctolagus cuniculus]
gi|222352151|ref|NP_006187.2| poly(rC)-binding protein 1 [Homo sapiens]
gi|379642963|ref|NP_001243850.1| poly(rC)-binding protein 1 [Equus caballus]
gi|114577924|ref|XP_515530.2| PREDICTED: poly(rC)-binding protein 1 isoform 3 [Pan troglodytes]
gi|296223628|ref|XP_002757702.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
gi|297667414|ref|XP_002811975.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Pongo abelii]
gi|301758216|ref|XP_002914950.1| PREDICTED: poly(rC)-binding protein 1-like [Ailuropoda melanoleuca]
gi|332226765|ref|XP_003262561.1| PREDICTED: poly(rC)-binding protein 1 [Nomascus leucogenys]
gi|348566575|ref|XP_003469077.1| PREDICTED: poly(rC)-binding protein 1-like [Cavia porcellus]
gi|354491739|ref|XP_003508012.1| PREDICTED: poly(rC)-binding protein 1-like [Cricetulus griseus]
gi|395731716|ref|XP_003775951.1| PREDICTED: poly(rC)-binding protein 1 isoform 2 [Pongo abelii]
gi|395841306|ref|XP_003793486.1| PREDICTED: poly(rC)-binding protein 1 [Otolemur garnettii]
gi|402891162|ref|XP_003908824.1| PREDICTED: poly(rC)-binding protein 1 [Papio anubis]
gi|410954989|ref|XP_003984141.1| PREDICTED: poly(rC)-binding protein 1 [Felis catus]
gi|426223390|ref|XP_004005858.1| PREDICTED: poly(rC)-binding protein 1 [Ovis aries]
gi|426335835|ref|XP_004029412.1| PREDICTED: poly(rC)-binding protein 1 [Gorilla gorilla gorilla]
gi|12230408|sp|O19048.1|PCBP1_RABIT RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42559420|sp|P60335.1|PCBP1_MOUSE RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42560548|sp|Q15365.2|PCBP1_HUMAN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1; AltName: Full=Nucleic acid-binding
protein SUB2.3
gi|75040221|sp|Q5E9A3.1|PCBP1_BOVIN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1
gi|2134737|pir||S58529 alpha-complex protein 1 - human
gi|5805273|gb|AAD51920.1|AF139894_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|5805275|gb|AAD51921.1|AF139895_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|1215671|gb|AAA91317.1| alpha-CP1 [Homo sapiens]
gi|2644966|emb|CAA05814.1| hnRNP-E1 protein [Oryctolagus cuniculus]
gi|13435897|gb|AAH04793.1| Poly(rC) binding protein 1 [Mus musculus]
gi|24980783|gb|AAH39742.1| Poly(rC) binding protein 1 [Homo sapiens]
gi|47124405|gb|AAH69915.1| Poly(rC) binding protein 1 [Mus musculus]
gi|59858399|gb|AAX09034.1| poly(rC) binding protein 1 [Bos taurus]
gi|62702265|gb|AAX93191.1| unknown [Homo sapiens]
gi|119620240|gb|EAW99834.1| poly(rC) binding protein 1 [Homo sapiens]
gi|148666767|gb|EDK99183.1| mCG130511 [Mus musculus]
gi|189054893|dbj|BAG36897.1| unnamed protein product [Homo sapiens]
gi|208968661|dbj|BAG74169.1| poly(rC) binding protein 1 [synthetic construct]
gi|281346699|gb|EFB22283.1| hypothetical protein PANDA_002891 [Ailuropoda melanoleuca]
gi|296482414|tpg|DAA24529.1| TPA: poly(rC)-binding protein 1 [Bos taurus]
gi|312151908|gb|ADQ32466.1| poly(rC) binding protein 1 [synthetic construct]
gi|344250809|gb|EGW06913.1| Poly(rC)-binding protein 1 [Cricetulus griseus]
gi|355565760|gb|EHH22189.1| hypothetical protein EGK_05412 [Macaca mulatta]
gi|355751386|gb|EHH55641.1| hypothetical protein EGM_04885 [Macaca fascicularis]
gi|380813262|gb|AFE78505.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|380813264|gb|AFE78506.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|383418769|gb|AFH32598.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384940310|gb|AFI33760.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384947378|gb|AFI37294.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|410262902|gb|JAA19417.1| poly(rC) binding protein 1 [Pan troglodytes]
gi|431912608|gb|ELK14626.1| Poly(rC)-binding protein 1 [Pteropus alecto]
gi|444723406|gb|ELW64063.1| Poly(rC)-binding protein 1 [Tupaia chinensis]
Length = 356
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 153 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 201
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 202 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQ-----QSHF 248
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 249 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 308
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 309 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q V +++ +
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLET 169
Query: 323 LIQ 325
L Q
Sbjct: 170 LSQ 172
>gi|410355313|gb|JAA44260.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 153 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 201
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 202 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQ-----QSHF 248
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 249 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGYIIGRQGANINEIRQM 308
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 309 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
>gi|355709446|gb|AES03594.1| Poly rC-binding protein 1 [Mustela putorius furo]
Length = 209
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI---------SEGNCPERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q V +++ +
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLET 169
Query: 323 LIQ 325
L Q
Sbjct: 170 LSQ 172
>gi|417410101|gb|JAA51528.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 365
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 75
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 76 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 131
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 132 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 185
Query: 224 QVISI 228
+V++I
Sbjct: 186 RVMTI 190
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 107 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 162 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 210
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 211 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQQS-----HF 257
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 258 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 317
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 318 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 359
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I + + +R++ ++G
Sbjct: 24 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI---------SEGNCPERIITLTGPT 74
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 75 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 118
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q V +++ +
Sbjct: 119 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLET 178
Query: 323 LIQ 325
L Q
Sbjct: 179 LSQ 181
>gi|392340090|ref|XP_002726454.2| PREDICTED: poly(rC)-binding protein 1, partial [Rattus norvegicus]
Length = 365
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 75
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 76 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 131
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 132 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 185
Query: 224 QVISI 228
+V++I
Sbjct: 186 RVMTI 190
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 107 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 161
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 162 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 210
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 211 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQQS-----HF 257
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 258 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 317
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 318 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 359
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I + + +R++ ++G
Sbjct: 24 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI---------SEGNCPERIITLTGPT 74
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 75 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 118
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q V +++ +
Sbjct: 119 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLET 178
Query: 323 LIQ 325
L Q
Sbjct: 179 LSQ 181
>gi|403260495|ref|XP_003922705.1| PREDICTED: poly(rC)-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 302
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI---------SEGNCPERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q V +++ +
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLET 169
Query: 323 LIQ 325
L Q
Sbjct: 170 LSQ 172
>gi|384947380|gb|AFI37295.1| poly(rC)-binding protein 1 [Macaca mulatta]
Length = 358
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 123/283 (43%), Gaps = 39/283 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 153 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 201
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 202 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQ-----QSHF 248
Query: 226 ISISPAYNYSAIRPAQPFVE------PTSADYVTFEMLISESLVGGLIGRCGSNISRIRN 279
+ ++ I + P V+ SA + E+ I L+G +IGR G+ I+ IR
Sbjct: 249 AMMHGGTGFAGIDSSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQ 308
Query: 280 ESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 309 MSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 351
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 266 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 325
Query: 95 RVIIIS 100
R + I+
Sbjct: 326 RQVTIT 331
>gi|311252459|ref|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa]
Length = 356
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 120/279 (43%), Gaps = 32/279 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 153 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 201
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
+++G PL A + + + P L L ++ Q +
Sbjct: 202 SDAAGYPHATHDLEGTPLDAYSIQGQHTIS-----PLDLAKLNQVARQ-----QSHFAMM 251
Query: 229 SPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR SGA
Sbjct: 252 HGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGA 311
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
IK+ R + GSA ++LA+ ++ + S+
Sbjct: 312 QIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
>gi|444021|emb|CAA82631.1| sub2.3 [Homo sapiens]
Length = 299
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI---------SEGNCPERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q V +++ +
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLET 169
Query: 323 LIQ 325
L Q
Sbjct: 170 LSQ 172
>gi|72013105|ref|XP_781909.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Strongylocentrotus purpuratus]
Length = 447
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED + + + + R ++FR+++ S G VIGK G I+++R + A + I
Sbjct: 13 GKRSAED-QRQNQNKRPRGDYNQIIFRLMIRSINAGGVIGKGGENIKRLRVDYDAKVSIP 71
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D ER+I I +++ DN + ++ + + D N+ + IR
Sbjct: 72 DCNG--PERIIKIGTRNVDNAIDCIKDIIPSVGEKKHSQDQQNN------------SFIR 117
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
+++ S AG +IG +G I++LR +GA + C + +DRVVQ++G +
Sbjct: 118 IMVHQSHAGAIIGRAGFKIKELREKTGAHFKVYT----ETCPKS--TDRVVQLTGSPDVI 171
Query: 207 LNALVEI 213
A E+
Sbjct: 172 AKAAREV 178
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 33/194 (17%)
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLP 185
+D +K G RL+I AG +IG G+NI++LR A + I P
Sbjct: 18 EDQRQNQNKRPRGDYNQIIFRLMIRSINAGGVIGKGGENIKRLRVDYDAKVSI------P 71
Query: 186 LCASAHESDRVVQI-SGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFV 244
C +R+++I + +V ++ + +I + E Q N S IR
Sbjct: 72 DCNGP---ERIIKIGTRNVDNAIDCIKDIIPSVGEKKHSQ-----DQQNNSFIR------ 117
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGG 303
+++ +S G +IGR G I +R ++GA KVY + R +Q G
Sbjct: 118 -----------IMVHQSHAGAIIGRAGFKIKELREKTGAHFKVYTETCPKSTDRVVQLTG 166
Query: 304 SAQQVALAKQRVDE 317
S +A A + V E
Sbjct: 167 SPDVIAKAAREVYE 180
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P+ G +IG+ G RI++IR ++ A IKI D ++ ++R+I I+ +D ++ A+
Sbjct: 372 QVTIPNDLAGSIIGRGGQRIKRIRMQSGAQIKIDDPLSGAKDRIITITGTQHD--IAHAK 429
Query: 113 NALQ 116
LQ
Sbjct: 430 FLLQ 433
>gi|351712813|gb|EHB15732.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 66 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 121
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 122 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 175
Query: 224 QVISI 228
+V++I
Sbjct: 176 RVMTI 180
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 97 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 151
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 152 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 200
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 201 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQ-----QSHF 247
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 248 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 307
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R I GSA ++LA+ ++ + S+
Sbjct: 308 SGAQIKIANPVEGSSGRQITITGSAASISLAQYLINARLSSE 349
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I N C +R++ ++G
Sbjct: 14 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPT 64
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 65 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 108
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q V +++ +
Sbjct: 109 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLET 168
Query: 323 LIQ 325
L Q
Sbjct: 169 LSQ 171
>gi|440907813|gb|ELR57910.1| Poly(rC)-binding protein 1 [Bos grunniens mutus]
Length = 356
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 153 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 201
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 202 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQ-----QSHF 248
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR GSNI+ IR
Sbjct: 249 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGSNINEIRQM 308
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 309 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
>gi|351714348|gb|EHB17267.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 65
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 66 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 121
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 122 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 175
Query: 224 QVISI 228
+V++I
Sbjct: 176 RVMTI 180
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 97 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 151
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 152 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 200
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 201 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQ-----QSHF 247
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 248 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 307
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 308 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 349
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I N C +R++ ++G
Sbjct: 14 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPT 64
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 65 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 108
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 109 GSLIGKGGCKIKEIRESTGAQVQVAG 134
>gi|460771|emb|CAA55016.1| hnRNP-E1 [Homo sapiens]
Length = 356
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 99/185 (53%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 153 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 201
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++ G AT + P PL A + + + P L L ++ Q
Sbjct: 202 SDAVGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQ-----QSHF 248
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 249 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 308
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 309 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINI---------SEGNCPERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G LIG+ G I IR +GA ++V G R I G Q V +++ +
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLET 169
Query: 323 LIQ 325
L Q
Sbjct: 170 LSQ 172
>gi|71897277|ref|NP_001026556.1| heterogeneous nuclear ribonucleoprotein K [Gallus gallus]
gi|75571241|sp|Q5ZIQ3.1|HNRPK_CHICK RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|53135051|emb|CAG32390.1| hypothetical protein RCJMB04_24e23 [Gallus gallus]
Length = 427
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + + +I E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADTETIGEILKKII-----PTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + + E+P + +P P + DY F M+ +
Sbjct: 173 DRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 218
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 409
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 410 NAQYLLQ 416
>gi|32564028|ref|NP_491825.2| Protein F26B1.2, isoform c [Caenorhabditis elegans]
gi|373218907|emb|CCD64193.1| Protein F26B1.2, isoform c [Caenorhabditis elegans]
Length = 380
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E A +++ D+ ERV V +D +
Sbjct: 36 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCT--------VTADEK 85
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
L + ++ + +D+ SE +R+L+ S AG LIG +G I++LR
Sbjct: 86 TVLNILKDVLPRLEDNFSERDPCE--------VRMLVHQSHAGALIGRNGSKIKELREKC 137
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPA 231
A + I CA +DRV+ SG+ VL + E+ +L+E P + PA
Sbjct: 138 SARLKIFT-----GCAPG-STDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPA 191
Query: 232 YNY 234
+NY
Sbjct: 192 FNY 194
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 34/146 (23%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 35 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 85
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
VLN L ++ +L +N F E D ML+ +S G
Sbjct: 86 TVLNILKDVLPRLEDN----------------------FSE---RDPCEVRMLVHQSHAG 120
Query: 265 GLIGRCGSNISRIRNESGAMIKVYGG 290
LIGR GS I +R + A +K++ G
Sbjct: 121 ALIGRNGSKIKELREKCSARLKIFTG 146
>gi|164655395|ref|XP_001728827.1| hypothetical protein MGL_3994 [Malassezia globosa CBS 7966]
gi|159102713|gb|EDP41613.1| hypothetical protein MGL_3994 [Malassezia globosa CBS 7966]
Length = 382
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 50/294 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
++ R ++ + +IGK+G I +IRE + A + I+++I + ER++ VS
Sbjct: 85 IVMRALIITSDASVIIGKQGRHINEIRELSNARLNISESIPSNPERIL---------TVS 135
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +A+ + L+++ + G AA +IR +I S+ G +IG G I++++
Sbjct: 136 GALDAVSKAFGLLVRRINDEPFDQPSLPGSRAA-SIRFIIPNSRMGAIIGRQGSKIKEIQ 194
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR--QVIS 227
+SGA + LP ++R++ I+G A+ A+ +G L E+P R +
Sbjct: 195 EASGARLHA-GETMLP-----GSTERILSITGVADALHIAVYYVGATLLEHPDRGSNNLP 248
Query: 228 ISPAYNYSAIRPA---QPFVEPTSADYV-------------------TFEMLISESLVGG 265
PA A+ P+ P P+++ T ++ I LVG
Sbjct: 249 YRPAAVNRALTPSLVGSPLNSPSASMLALSATNSPKALASVLTPGLQTQQIFIPNDLVGC 308
Query: 266 LIGRCGSNISRIRNESGAMIKVY--------GGKGEQKHRHIQFGGSAQQVALA 311
+IG+ G I+ IR S + IK+ GG G + R + G + +A
Sbjct: 309 IIGKGGQKINEIRQLSASHIKIMERNAGIAAGGSGSE--RLVTITGPPPNIQMA 360
>gi|410970835|ref|XP_003991882.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Felis catus]
Length = 536
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 273
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A VEI +LRE +++++ P N SA+ P
Sbjct: 274 AEVEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPTGPRGAPPAPPY 333
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 334 HPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLA 391
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 392 RFAGASIKIAPAEG 405
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 353 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 412
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 413 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 460
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 461 VIGKGGKTVNELQNLTSAEVIV 482
>gi|25144314|ref|NP_740869.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
gi|373218905|emb|CCD64191.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
Length = 397
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E A +++ D+ ERV V +D +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCT--------VTADEK 102
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
L + ++ + +D+ SE +R+L+ S AG LIG +G I++LR
Sbjct: 103 TVLNILKDVLPRLEDNFSERDPCE--------VRMLVHQSHAGALIGRNGSKIKELREKC 154
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPA 231
A + I CA +DRV+ SG+ VL + E+ +L+E P + PA
Sbjct: 155 SARLKIFT-----GCAPG-STDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPA 208
Query: 232 YNY 234
+NY
Sbjct: 209 FNY 211
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 34/146 (23%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 102
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
VLN L ++ +L +N F E D ML+ +S G
Sbjct: 103 TVLNILKDVLPRLEDN----------------------FSE---RDPCEVRMLVHQSHAG 137
Query: 265 GLIGRCGSNISRIRNESGAMIKVYGG 290
LIGR GS I +R + A +K++ G
Sbjct: 138 ALIGRNGSKIKELREKCSARLKIFTG 163
>gi|344266063|ref|XP_003405100.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Loxodonta
africana]
Length = 360
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 97/177 (54%), Gaps = 21/177 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN----- 66
Query: 110 DAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+
Sbjct: 67 ----AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIK 121
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++R S+GA + + A + LP + ++R + I+G +++ + +I + E P+
Sbjct: 122 EIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLEVSPQ 172
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 66 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVAG 135
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 279 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 338
Query: 308 VALAKQRVDEYIYSQ 322
++LA+ ++ + S+
Sbjct: 339 ISLAQYLINVRLSSE 353
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E++G A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +
Sbjct: 268 EVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTD 327
Query: 95 RVIIIS 100
R + I+
Sbjct: 328 RQVTIT 333
>gi|387018122|gb|AFJ51179.1| Heterogeneous nuclear ribonucleoprotein K-like [Crotalus
adamanteus]
Length = 426
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDIEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + + +I E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H SDRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSSDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + + E+P + +P P + DY F M+ +
Sbjct: 173 DRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 218
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 350 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 409
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 410 QYLLQNSVKQYA 421
>gi|322796009|gb|EFZ18633.1| hypothetical protein SINV_09712 [Solenopsis invicta]
Length = 440
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 70
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--------TIRLLIAGSQAGCLIGMS 161
+ + + K ++ S+ + G T+RL++ SQ G LIG
Sbjct: 71 ---SIFKAFTLICKKFEEWCSQFHDIQGGGAGGGGGVSRPPITLRLIVPASQCGSLIGKG 127
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+P
Sbjct: 128 GSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLESP 181
Query: 222 PR 223
P+
Sbjct: 182 PK 183
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG---KGEQKHRHIQFGGS 304
+A+ T EM + L+G +IG+ G+ I+ IR SGAMI++ +G R I G+
Sbjct: 367 AANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGN 426
Query: 305 AQQVALAKQRVD 316
VALA+ ++
Sbjct: 427 PDAVALAQYLIN 438
>gi|307185703|gb|EFN71619.1| Heterogeneous nuclear ribonucleoprotein K [Camponotus floridanus]
Length = 143
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 28 KRRREDGEIEGS----DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR E G + GS P +R + D R+++PS+ G +IGK G I K+R + KA+I
Sbjct: 2 KREAEAGAMTGSGGPTSPHKRYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASI 61
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D ERV+ IS SD LQ +L + N E ++ G +
Sbjct: 62 IVPDCPG--PERVLTIS--------SDLPTVLQ-----VLNEVVPNLEETRFQNGSRHGS 106
Query: 144 ---TIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+R+L+ SQAGC+IG G I++LR S
Sbjct: 107 DEIDVRMLVHQSQAGCIIGKGGLKIKELREVS 138
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 28/139 (20%)
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
+ +RLLI AG +IG GQNI KLR+ A+I++ P C +RV+ IS D
Sbjct: 28 DELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV------PDCPGP---ERVLTISSD 78
Query: 203 VPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESL 262
+P VL L E+ L E + N S +D + ML+ +S
Sbjct: 79 LPTVLQVLNEVVPNLEE---------TRFQNGSR----------HGSDEIDVRMLVHQSQ 119
Query: 263 VGGLIGRCGSNISRIRNES 281
G +IG+ G I +R S
Sbjct: 120 AGCIIGKGGLKIKELREVS 138
>gi|169775165|ref|XP_001822050.1| RNA-binding protein rnc1 [Aspergillus oryzae RIB40]
gi|238496215|ref|XP_002379343.1| KH domain RNA-binding protein [Aspergillus flavus NRRL3357]
gi|83769913|dbj|BAE60048.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694223|gb|EED50567.1| KH domain RNA-binding protein [Aspergillus flavus NRRL3357]
gi|391872927|gb|EIT82002.1| polyC-binding proteins alphaCP-1 [Aspergillus oryzae 3.042]
Length = 357
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 129/305 (42%), Gaps = 66/305 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G+++ + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 24 DEGDMDITPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 83
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A ++ G V +N +R
Sbjct: 84 GVHDRVLTVTGP-----LQGTARAYALVAKGLLEG------APQMGMGGVVSNNGTHPVR 132
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG SG I+ ++++SG +V LP ++R+V++ G +
Sbjct: 133 LLISHNQMGTIIGRSGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 186
Query: 207 LNALVEIGNQLRENPPRQVISI--SPAY--------------NYSAIRP----------- 239
A+ EIG L ++ R +I +PA N + RP
Sbjct: 187 EKAVWEIGKCLIDDWQRGTGTILYNPAVRASVGTAPVNQNVGNGYSSRPYNRTGNGADFS 246
Query: 240 -----------------AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESG 282
P V + T + I +VG +IGR GS I+ IR SG
Sbjct: 247 DQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRAGSKITEIRRSSG 306
Query: 283 AMIKV 287
A I +
Sbjct: 307 ARISI 311
>gi|226289821|gb|EEH45305.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 364
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 71/313 (22%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
R E G+ EG AQ +L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RVNEQGDPEGPPKSEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK 82
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT--- 144
+ +RV+ ++ + A A +A +L+ A ++ G V +N
Sbjct: 83 VVQGVHDRVLTVTGP-----LQGAAKAYAIVAKSLLEG------APQLGMGGVVSNNGTH 131
Query: 145 -IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 PVRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTP 185
Query: 204 PAVLNALVEIGNQLRENPPRQVISI--SPA---------------------------YN- 233
+ A+ EIG L ++ R ++ +PA YN
Sbjct: 186 EGIEKAVWEIGKCLIDDWQRGTGTVLYNPAVRASVGGAPINNSLGSGGSSGGYGGRSYNR 245
Query: 234 -------------YS------AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
YS A P V + T + I +VG +IGR GS I
Sbjct: 246 TGNGADFSDQTGGYSRRSNSDAANRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKI 305
Query: 275 SRIRNESGAMIKV 287
S IR SGA I +
Sbjct: 306 SEIRRVSGARISI 318
>gi|410970839|ref|XP_003991884.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Felis catus]
Length = 542
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 120 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 177
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 178 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 223
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 224 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 279
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A VEI +LRE +++++ P N SA+ P
Sbjct: 280 AEVEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPTGPRGAPPAPPY 339
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 340 HPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLA 397
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 398 RFAGASIKIAPAEG 411
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 419 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|345311367|ref|XP_001520914.2| PREDICTED: poly(rC)-binding protein 4-like [Ornithorhynchus
anatinus]
Length = 447
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 125/295 (42%), Gaps = 62/295 (21%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 101 VTLRLVIPASQCGSLIGKAGAKIKEIRESTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 160
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI---------- 158
++QI A+IL+ + H + + +L++ +Q +
Sbjct: 161 -----CVRQICAVILESPPKGATIPY----HPSLSLGTVLLSTNQVANIAIQKQERGSNR 211
Query: 159 ------GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
SGQ KLR + + + A + PL + ++ Q+SG
Sbjct: 212 QYHQVEHGSGQP-GKLRGNGQEAVEVAAVSMGPLPPPEPKVSKLQQLSG----------- 259
Query: 213 IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGS 272
PP S S P ++P A + E L+ L+G +IGR GS
Sbjct: 260 --------PPVPFTSPS----------VVPGLDP-GAQTSSQEFLVPNDLIGCVIGRQGS 300
Query: 273 NISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
IS IR SGA IK+ RH+ GS +ALA +Y+ + ++ A
Sbjct: 301 KISEIRQMSGAHIKIGNQTEGSGERHVTITGSPVSIALA-----QYLITACLETA 350
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 17 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 65
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + G V+ T+RL+I SQ G LIG +G I++
Sbjct: 66 GSTGAVFHAVSMIAFKLDEDLCTGPPNGGSVSKPPVTLRLVIPASQCGSLIGKAGAKIKE 125
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+R S+GA + + A + LP + ++R V +SG A++ + +I + E+PP+
Sbjct: 126 IRESTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPK 175
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 18 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 68
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
AV +A+ I +L E+ + P S +P VT ++I S
Sbjct: 69 GAVFHAVSMIAFKLDED-----LCTGPPNGGSVSKPP-----------VTLRLVIPASQC 112
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR +GA ++V G
Sbjct: 113 GSLIGKAGAKIKEIRESTGAQVQVAG 138
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 36 IEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEER 95
+ G DP + +Q+ L VP+ IG VIG++G +I +IR+ + A IKI + ER
Sbjct: 270 VPGLDPGAQTSSQEFL----VPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQTEGSGER 325
Query: 96 VIIIS 100
+ I+
Sbjct: 326 HVTIT 330
>gi|296087074|emb|CBI33448.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 79/146 (54%), Gaps = 21/146 (14%)
Query: 72 IQKIREETKATIKIADAIARHEERVIII--------SSKDNDNVVSDAENALQQIAALIL 123
I+++R +TK I+I + ++R EE V+ I + D+ VS ++AL ++ ++
Sbjct: 10 IKQLRVDTKFKIRIDETVSRCEELVVTIYNFSDETNAFDDSYTFVSPTQDALFRVHDKVV 69
Query: 124 KD---DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+ + EAS+V T++LL+ Q GC+IG GQ I+ + + SGA I IL
Sbjct: 70 SEKVHSEDFEEASQV--------TVQLLVTSDQIGCVIGKGGQIIQNIYSESGAQIYILK 121
Query: 181 PNQLPLCASAHESDRVVQISGDVPAV 206
+ L CA + D +VQISG+ P +
Sbjct: 122 NDHLLSCALSF--DELVQISGERPLL 145
>gi|344283688|ref|XP_003413603.1| PREDICTED: poly(rC)-binding protein 1-like [Loxodonta africana]
Length = 438
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 180 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 234
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 235 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 283
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 284 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQQS-----HF 330
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 331 AMLHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 390
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 391 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 432
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 89/170 (52%), Gaps = 23/170 (13%)
Query: 65 IGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124
+G++G +++IREE+ A I I++ ER+I ++ N A+ + A+I+
Sbjct: 111 LGRKGTSVKRIREESGARINISEG--NCPERIITLTGPTN---------AIFKAFAMIID 159
Query: 125 --DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
++D NS + A T+RL++ +Q G LIG G I+++R S+GA + + A +
Sbjct: 160 KLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGD 218
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVISI 228
LP + ++R + I+G +V + +I L ++P +V++I
Sbjct: 219 MLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 263
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 25/132 (18%)
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
+G G +++++R SGA I I + + +R++ ++G A+ A I ++L
Sbjct: 111 LGRKGTSVKRIREESGARINI---------SEGNCPERIITLTGPTNAIFKAFAMIIDKL 161
Query: 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRI 277
E+ I+ S + +A RP VT +++ + G LIG+ G I I
Sbjct: 162 EED-----INSSMTNSTAASRPP-----------VTLRLVVPATQCGSLIGKGGCKIKEI 205
Query: 278 RNESGAMIKVYG 289
R +GA ++V G
Sbjct: 206 RESTGAQVQVAG 217
>gi|392873506|gb|AFM85585.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 424
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 36/237 (15%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
S KR ED + E + + R Q V R+++ S+ G VIGK G I+ +R + A++ +
Sbjct: 24 SCKRPAEDHDEEQAFKRSRNNDQCVELRLLLQSKNAGAVIGKGGKNIKSLRTDYNASVSV 83
Query: 86 ADAIARHEERVIIISS--KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
D+ ER++ I++ + +++S L++ KD D
Sbjct: 84 PDSSG--PERILSINADIETIGDILSKIVPTLEEYQHYKGKDFDCE-------------- 127
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+R+L+ SQAG +IG+ G I++LR S+ TI + H +DRVV + G
Sbjct: 128 -LRMLVHQSQAGSIIGVKGVKIKELRESTQTTIKLFQE------CCPHSTDRVVLLGGKP 180
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I L E+P + +P P + DY F M+ E
Sbjct: 181 DRVVECIKIIMGLLSESPVK-----------GRAQPYDPNFYDETYDYGGFTMMFDE 226
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 350 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ--IQ 407
Query: 110 DAENALQQIAALIL 123
+A+ LQ +
Sbjct: 408 NAQYLLQNSCSSFF 421
>gi|345486914|ref|XP_001607400.2| PREDICTED: poly(rC)-binding protein 3-like [Nasonia vitripennis]
Length = 476
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+I+ +++G +IGK+G +++ REE+ A I I+D ER++ ++ N
Sbjct: 20 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDGSC--PERIVTVTGPTN----- 72
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN---------TIRLLIAGSQAGCLIGM 160
+ + + K ++ S+ + G A T+RL++ SQ G LIG
Sbjct: 73 ---SIFKAFTLICKKFEEWCSQFHDIQGGGNAGGGGGVPRPPITLRLIVPASQCGSLIGK 129
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I+++R +GA+I + A LP + ++R V ISG A+ + I + E+
Sbjct: 130 GGSKIKEIREVTGASIQV-ASEMLP-----NSTERAVTISGTSEAITQCIYHICCVMLES 183
Query: 221 PPR 223
PP+
Sbjct: 184 PPK 186
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 49/276 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I++IRE T A+I++A + + ER + IS
Sbjct: 112 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISG------T 165
Query: 109 SDA-ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG----MSGQ 163
S+A + I ++L+ + V I +AG QA + G +
Sbjct: 166 SEAITQCIYHICCVMLESPPKGATIPYRPKPQVGGPVI---LAGGQAFTIQGNYAVPAHS 222
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++ KL +S P G PA G+QLR N
Sbjct: 223 DMGKLGSS---------PLAGLAALGLGGLAAPANTGGLNPAA--LAALAGSQLRTN--- 268
Query: 224 QVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
N + +PA A+ T EM + L+G +IG+ G+ I+ IR SGA
Sbjct: 269 ---------NANRQQPA--------ANNQTHEMTVPNELIGCIIGKGGTKIAEIRQISGA 311
Query: 284 MIKVYGG---KGEQKHRHIQFGGSAQQVALAKQRVD 316
MI++ +G R I G+ VALA+ ++
Sbjct: 312 MIRISNCEEREGGPTDRTITITGNPDSVALAQYLIN 347
>gi|353237678|emb|CCA69645.1| related to PBP2-PAB1 binding protein [Piriformospora indica DSM
11827]
Length = 406
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 125/278 (44%), Gaps = 40/278 (14%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E+G+ S+ A + R ++ ++ +IGK G + +IRE++ A + ++++I
Sbjct: 89 ENGQKSSSNAATAPPASTIHMRCLIVTQDASIIIGKGGSHVNEIREKSNAKVMVSESIPG 148
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
+ ER++ VS A +A+ + LI++ + V A TI+ +I
Sbjct: 149 NPERIL---------NVSGALDAVSKAFGLIVRRINDEPMGPSVPGSR--AVTIKFIIPH 197
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
S+ G +IG G I++++ +SGA + + LP ++R++ ++G A+ A
Sbjct: 198 SRMGSVIGKGGAKIKEIQEASGARLN-ASEGMLP-----GSTERILSVTGVADAIHIATY 251
Query: 212 EIGNQL---------------RENPPRQVISI----SPAYNYSAIR---PAQPFVEPTSA 249
IGN L + PPR +P Y + P P P S
Sbjct: 252 YIGNILIQQQEAHGAVGLSYRQSRPPRAFNETMGGGAPGQQYFPGQYQSPMMPAAVP-SG 310
Query: 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T ++ I LVG +IG+ G+ I+ IR S + IK+
Sbjct: 311 PLQTQQIYIPNDLVGCIIGKGGAKINEIRQTSQSQIKI 348
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 34/203 (16%)
Query: 127 DSNSEASKVAAGHVAANTI--RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
++ ++S AA A+TI R LI A +IG G ++ ++R S A +++ +
Sbjct: 89 ENGQKSSSNAATAPPASTIHMRCLIVTQDASIIIGKGGSHVNEIREKSNAKVMVS--ESI 146
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFV 244
P +R++ +SG + AV A I ++ + P + P+ P
Sbjct: 147 P-----GNPERILNVSGALDAVSKAFGLIVRRINDEP---------------MGPSVP-- 184
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGG 303
+ VT + +I S +G +IG+ G+ I I+ SGA + G R + G
Sbjct: 185 ---GSRAVTIKFIIPHSRMGSVIGKGGAKIKEIQEASGARLNASEGMLPGSTERILSVTG 241
Query: 304 SAQQVALAKQRVDEYIYSQLIQQ 326
A + +A YI + LIQQ
Sbjct: 242 VADAIHIATY----YIGNILIQQ 260
>gi|50545305|ref|XP_500190.1| YALI0A18161p [Yarrowia lipolytica]
gi|49646055|emb|CAG84122.1| YALI0A18161p [Yarrowia lipolytica CLIB122]
Length = 385
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 131/313 (41%), Gaps = 60/313 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
++ R +V +++ G +IGK+G + +R+ K + ++A +R++ ++ +
Sbjct: 67 LVLRALVSTKEAGVIIGKDGATVAGLRDAAKVKAGVTKSVAGIPDRILSVA-----GTAA 121
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ AA ++ S + V G T+RLLI + G ++G G I+ ++
Sbjct: 122 GVSRAIGLAAAALVAHPPSGYVLNLVPPGPQGTTTVRLLIPHQRMGSILGKGGVRIKAIQ 181
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
G IV + ++LP H S+R+V+I G+ A+ A+ + L E + + +
Sbjct: 182 AKYGVRIVA-SKHRLP-----HSSERIVEIQGEPLALQTAVYTVVQCLLEEKDKSI--LV 233
Query: 230 PAYNYSAIRPAQPFVE-PTSADYVTF---------------------------------- 254
YN ++ + E P +YV+F
Sbjct: 234 AYYNPRSLEGSMTLREDPEDKEYVSFAGYRGRHQDGGSDTDTDREATVSDHGGDAEALSS 293
Query: 255 ------EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
+I S G +IGR G NI +R SGA I + ++ R + GS V
Sbjct: 294 SDACVQSTIIPASFAGYIIGRRGDNIRELRKRSGAAISI--SSEYERERTLLMRGSEAAV 351
Query: 309 ALA----KQRVDE 317
ALA +Q++DE
Sbjct: 352 ALAMSMLQQQMDE 364
>gi|390335395|ref|XP_003724137.1| PREDICTED: far upstream element-binding protein 3-like isoform 3
[Strongylocentrotus purpuratus]
Length = 689
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 131/288 (45%), Gaps = 37/288 (12%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR 91
E EG D R + F VP++ +G +IG++G +I ++ E+ I+IA
Sbjct: 123 EPNTYEGEDQNRDGHGTEEFF---VPNKMVGLIIGRQGQQISSLQSESGCNIQIAPENGI 179
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAG 151
+R + ++ A+ +LIL D N + A G++ T+ +LI
Sbjct: 180 SGDRQVTLTG---------TPEAVMHAKSLIL--DIVNKASQNEAEGNM---TVDMLIPA 225
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
++ G +IG G+ I++L+ +G +V++ + P+ D+ ++ISGD + A
Sbjct: 226 TKVGLVIGKGGETIKQLQEQAGVRMVMI--QEGPVATGM---DKPLRISGDSQKIEEAKR 280
Query: 212 EIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCG 271
+ +++ EN S + YS P + + P A VG +IGR G
Sbjct: 281 LV-SEVMENAKNNDRSSGDNF-YSRGGPHKDVIVPKHA-------------VGMVIGRGG 325
Query: 272 SNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
I RI+ ++ A ++ G + R GSA+ V++A+ V++ +
Sbjct: 326 DMIKRIQEQTKARVQFKPGDRDAPERVALITGSAESVSMAESMVNDLV 373
>gi|281354032|gb|EFB29616.1| hypothetical protein PANDA_003725 [Ailuropoda melanoleuca]
Length = 434
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 42 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 99
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 100 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 145
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 146 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 201
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A VEI +LRE +++++ P N SA+ P
Sbjct: 202 AEVEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGAPPAPPY 261
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 262 HPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLA 319
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 320 RFAGASIKIAPAEG 333
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 281 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 340
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 341 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 388
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 389 VIGKGGKTVNELQNLTSAEVIV 410
>gi|308798891|ref|XP_003074225.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
gi|116000397|emb|CAL50077.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
Length = 402
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 34/194 (17%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR-HEERVIIISSKDND---N 106
+FR++ ++G +IG++G R++ I ET A +K+ + AR HE V+I + + D +
Sbjct: 17 VFRVLCAETRVGGLIGRQGKRVRGIVTETGAQVKVLASTARCHERAVLIFAPRARDGPGD 76
Query: 107 VVSDAENALQQIAALI----LKDDDSNSEASKVAA-------------------GHVAAN 143
+ E A + + L + +D+ + + G A+
Sbjct: 77 TCAAREGARRVVRYLTRARAVTEDECDGARDESEDESDDDDDGRRGDGVGGQDLGRSTAH 136
Query: 144 -TIRLLIAGSQAGCLIGMSGQNIEKLRN-SSGATIVILAPNQLPLCASAHESDRVVQISG 201
T+RLL+ QAG LIG G+NI+++R ++GA + + Q+P CA++ DRVV+I G
Sbjct: 137 VTLRLLVPAGQAGHLIGKGGENIQEVRKRANGAHVAVQEVGQVPPCATSE--DRVVEIHG 194
Query: 202 ---DVPAVLNALVE 212
DV +A+ E
Sbjct: 195 KPKDVRVAADAVFE 208
>gi|443926268|gb|ELU44971.1| cytoplasmic protein [Rhizoctonia solani AG-1 IA]
Length = 389
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 37/269 (13%)
Query: 39 SDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVII 98
SDP AQ + R ++ ++ +IGK G + +IRE++ A + ++++I + ER++
Sbjct: 59 SDPPAPPAAQ-IHMRCLIVTQDASIIIGKAGKHVNEIREKSGARVMVSESIPGNPERIL- 116
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
NV + + ++ + +D + V A TI+ +I S+ G +I
Sbjct: 117 -------NVSGPLDAVSKSFGLIVRRINDEPFDTPSVPGSR--AVTIKFIIPHSRMGSVI 167
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G I++++++SGA + + LP ++R++ +SG A+ A +GN L
Sbjct: 168 GRGGSKIKEIQDASGAKLN-ASEGMLP-----GSTERILSVSGVADAIHIATYYVGNILI 221
Query: 219 ENPPRQVISISPA-YNYSAIRPAQPFVEPTSA-------------------DYVTFEMLI 258
E RQ S S + Y S P PT T ++ I
Sbjct: 222 EAAERQPHSSSTSTYRPSGTSSRGPRYAPTPTYSGYYGYPPPPAPAPYPPGPPQTQQIYI 281
Query: 259 SESLVGGLIGRCGSNISRIRNESGAMIKV 287
LVG +IG+ GS I+ IR+ S + I++
Sbjct: 282 PNDLVGCIIGKGGSKINEIRSLSASQIRI 310
>gi|299753134|ref|XP_001833083.2| cytoplasmic protein [Coprinopsis cinerea okayama7#130]
gi|298410159|gb|EAU88772.2| cytoplasmic protein [Coprinopsis cinerea okayama7#130]
Length = 382
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 139/309 (44%), Gaps = 57/309 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ NV
Sbjct: 84 IHMRCLIVTQDASIIIGKGGAHVNEIREKSGARVMVSESIPGNPERIL--------NVSG 135
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ + ++ + +D + V A TI+ +I S+ G +IG +G I++++
Sbjct: 136 PLDAVSKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFMIPNSRMGSVIGKAGCKIKEIQ 193
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
++SGA + + LP ++RV+ ++G A+ A IGN L E R
Sbjct: 194 DASGARLN-ASEGMLP-----GSTERVLSVAGVADAIHIATYYIGNILIEANERL----- 242
Query: 230 PAYNYSAIRPAQPFVEP-------TSADYV------------------TFEMLISESLVG 264
P+ N S+ RP T + YV T E+ I LVG
Sbjct: 243 PSSNGSSYRPMAGSSASSSRRHHYTGSSYVPGPYPGYPPPHNPPQQLQTQEIFIPNGLVG 302
Query: 265 GLIGRCGSNISRIRNESGAMIKVY------GGK-GEQKHRHIQFGGSAQQVALAKQRVDE 317
+IGR GS I+ IR+ S + IK+ GG+ + R + G+ V +A Q
Sbjct: 303 CIIGRGGSKINEIRHMSASQIKIMEPGAGSGGRPAPEGERLVVITGNPPNVQMAIQ---- 358
Query: 318 YIYSQLIQQ 326
+Y++L Q+
Sbjct: 359 LLYTRLEQE 367
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 42/218 (19%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDNDNVV 108
V + ++P+ ++G VIGK G +I++I++ + A + ++ + ERV+ ++ V
Sbjct: 167 VTIKFMIPNSRMGSVIGKAGCKIKEIQDASGARLNASEGMLPGSTERVLSVAG------V 220
Query: 109 SDAEN-ALQQIAALILKDDD----SNSEASKVAAG---------HVAAN----------- 143
+DA + A I ++++ ++ SN + + AG H +
Sbjct: 221 ADAIHIATYYIGNILIEANERLPSSNGSSYRPMAGSSASSSRRHHYTGSSYVPGPYPGYP 280
Query: 144 ----------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
T + I GC+IG G I ++R+ S + I I+ P A E
Sbjct: 281 PPHNPPQQLQTQEIFIPNGLVGCIIGRGGSKINEIRHMSASQIKIMEPGAGSGGRPAPEG 340
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+R+V I+G+ P V A+ + +L + +Q+ S P+
Sbjct: 341 ERLVVITGNPPNVQMAIQLLYTRLEQEKQKQLHSAQPS 378
>gi|345796405|ref|XP_535832.3| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2
isoform 2 [Canis lupus familiaris]
Length = 531
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 109 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 166
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 167 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 212
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 213 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 268
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A VEI +LRE +++++ P N SA+ P
Sbjct: 269 AEVEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGAPPAPPY 328
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 329 HPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLA 386
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 387 RFAGASIKIAPAEG 400
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 348 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 407
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 408 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 455
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 456 VIGKGGKTVNELQNLTSAEVIV 477
>gi|119583082|gb|EAW62678.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
gi|119583085|gb|EAW62681.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
Length = 463
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|355567865|gb|EHH24206.1| hypothetical protein EGK_07823 [Macaca mulatta]
Length = 464
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQPTITLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
V+ I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VILIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + I ++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQPTITLF 181
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + ++++I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGFKDQIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|45361501|ref|NP_989327.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
gi|39794355|gb|AAH64170.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
Length = 399
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + ILK E + G+
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHFKGNDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR + TI + C H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQE-----CC-PHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + +IS SP S +P P + DY F M+ +
Sbjct: 173 DRVVECIKVILD---------LISESPVKGRS--QPYDPNFYDETYDYGGFTMMFDD 218
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
++ +P G +IGK G RI++IR E+ A+IKI + + ++R+I I+
Sbjct: 324 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITIT 371
>gi|449272169|gb|EMC82214.1| Heterogeneous nuclear ribonucleoprotein K [Columba livia]
Length = 422
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + + +I E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + + E+P + +P P + DY F M+ +
Sbjct: 173 DRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 218
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 352 ITTQVTIPKDLNLSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 409
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 410 NAQYLLQ 416
>gi|431909188|gb|ELK12778.1| RNA-binding protein Nova-2 [Pteropus alecto]
Length = 334
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 138/304 (45%), Gaps = 44/304 (14%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDP-- 204
Query: 224 QVISISPAYNYSAIRPAQPFV--EPT-----SADYVTFEMLISES------------LVG 264
S N S A P PT + ++T E L +ES LVG
Sbjct: 205 ---QSSSCLNISYANVAGPVANSNPTAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVG 261
Query: 265 GLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVALAKQRVDEYIY 320
++G+ G + + +GA I++ KGE ++R + GS A + +Y+
Sbjct: 262 AILGKGGKTLVEYQELTGARIQI-SKKGEFLPGTRNRRVTITGSP-----AATQAAQYLI 315
Query: 321 SQLI 324
SQ +
Sbjct: 316 SQRV 319
>gi|348522861|ref|XP_003448942.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Oreochromis niloticus]
Length = 588
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 133/303 (43%), Gaps = 49/303 (16%)
Query: 44 RAKAQ-DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIIS 100
R K Q D+ R++VP++ +G +IGKEG I+ I ++T + I I + E+ + I S
Sbjct: 188 RPKVQSDIPLRMLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAGAAEKPITIHS 247
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+ D NA + I ++ K+ ++ +++L S G LIG
Sbjct: 248 TPDG------CSNACKTIMDIMQKEALDTKFTEEIP--------LKILAHNSFVGRLIGK 293
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G+N++K+ +G I I L L + +R + + G + A A E+ ++RE+
Sbjct: 294 EGRNLKKIEQETGTKITISPLQDLTL----YNPERTITVKGSIEACAKAEEEVMKKIRES 349
Query: 221 PPRQVISIS------PAYNYSAI----------RPAQPFVEPTSA-----------DYVT 253
+ +++ P N +A+ P+ + P A + T
Sbjct: 350 YESDMAAMNLQSNLIPGLNLNALGLFPTTAPGMGPSMSSITPPGAHGGSSSFGGHPESET 409
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAK 312
+ I VG +IG+ G +I ++ + +GA IK+ +G + K R + G + A+
Sbjct: 410 VHLFIPALAVGAIIGKQGQHIKQLSHFAGASIKIAPAEGMDAKQRMVIIVGPPEAQFKAQ 469
Query: 313 QRV 315
R+
Sbjct: 470 CRI 472
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
+ +P+ +G +IGK+G I+++ A+IKIA A ++ ++I +V E
Sbjct: 412 LFIPALAVGAIIGKQGQHIKQLSHFAGASIKIAPAEGMDAKQRMVI-------IVGPPEA 464
Query: 114 ALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG 173
+ + K + N K A + + AG +IG G+ + +L+N +
Sbjct: 465 QFKAQCRIFGKLKEENFFGPKEEVKLEA----HIKVPAFAAGRVIGKGGKTVNELQNLTC 520
Query: 174 ATIVILAPNQLPLCASAHESDRV-VQISG 201
A +V+ P + E+D+V V+ISG
Sbjct: 521 AEVVV------PRDQTPDENDQVIVKISG 543
>gi|334333295|ref|XP_003341704.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
Length = 470
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 395 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 454
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 455 QYLLQNSVKQYSGKFF 470
>gi|119583083|gb|EAW62679.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_e [Homo
sapiens]
Length = 464
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|148222025|ref|NP_001090223.1| neuro-oncological ventral antigen 2 [Xenopus laevis]
gi|49256115|gb|AAH72959.1| Nova1 protein [Xenopus laevis]
Length = 413
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 31/222 (13%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD---VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
++R + E + KR A + + ++++PS G +IGK G I +++ ET ATIK
Sbjct: 9 RKRPLETPTEATSTKRSNTAAEDGELFLKVLIPSYAAGSIIGKGGQTIVQLQRETGATIK 68
Query: 85 IA---DAIARHEERVIIISSKDN-----DNVVSDAENALQQ------IAALILKDDDSNS 130
++ D ERV ++ N +++ + Q + L+ N+
Sbjct: 69 LSKSKDFYPGTTERVCLVQGSAEALLSVHNFIAEKVREVPQGAPKNDLGVLLPPQSTINA 128
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E +K A +L++ + AG +IG G + + SGA + + +Q P ++
Sbjct: 129 ERAKQA---------KLIVPNTTAGLIIGKGGATVRNIMEESGAWVQL---SQKPAGSNL 176
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY 232
HE RVV +SG+ V A+ I ++ RE+PP+ ++ +Y
Sbjct: 177 HE--RVVTVSGEPSQVQKAIHSIIHKSREDPPQGTTHLNISY 216
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV + G
Sbjct: 36 LKVLIPSYAAGSIIGKGGQTIVQLQRETGATIKLSKSKDF----YPGTTERVCLVQGSAE 91
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
A+L+ I ++RE P +P + + P Q + A ++++ + G
Sbjct: 92 ALLSVHNFIAEKVREVP-----QGAPKNDLGVLLPPQSTINAERAKQA--KLIVPNTTAG 144
Query: 265 GLIGRCGSNISRIRNESGAMIKV 287
+IG+ G+ + I ESGA +++
Sbjct: 145 LIIGKGGATVRNIMEESGAWVQL 167
>gi|59381084|gb|AAW84289.1| heterogeneous nuclear ribonucleoprotein K transcript variant [Homo
sapiens]
Length = 464
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISTDIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISTDIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|404351641|ref|NP_998156.3| heterogeneous nuclear ribonucleoprotein K [Danio rerio]
Length = 431
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V R+++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DTNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ D D + E L+ I L E + +G
Sbjct: 78 SVPDSSG--PERILSVSA-DIDTI---GEILLKIIPTL---------EEYQHYSGTDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGGKP 176
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + E P + +P P + DY F M+ E
Sbjct: 177 ERVVECIKVILELIAEAPIK-----------GRAQPYDPNFYDETYDYGGFTMMYEE 222
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 36/190 (18%)
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
I +D D S+ + ++ A +D +A K + +R+L+ AG +I
Sbjct: 5 IEQQDEDTTFSNTDTNGKRPA-----EDMDEEQAFKRSRNTDEMVELRVLLQSKNAGAVI 59
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+NI+ LR A++ + + +R++ +S D+ + L++I
Sbjct: 60 GKGGKNIKALRTDYNASVSV---------PDSSGPERILSVSADIDTIGEILLKI----- 105
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
+ ++ +YS T D +LI +SL GG+IG G+ I +R
Sbjct: 106 ------IPTLEEYQHYSG----------TDFD-CELRLLIHQSLAGGIIGVKGAKIKELR 148
Query: 279 NESGAMIKVY 288
+ IK++
Sbjct: 149 ENTQTTIKLF 158
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 356 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 415
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 416 QYLLQNSVKQYSGRFF 431
>gi|71895775|ref|NP_001025686.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
gi|62205009|gb|AAH93475.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
Length = 413
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 31/225 (13%)
Query: 28 KRRREDGEIEGSDPKRRAKAQD---VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
++R + E + KR A + + ++++PS G +IGK G I +++ ET ATIK
Sbjct: 9 RKRPLETPTEATSTKRSNTAGEDGELFLKVLIPSYAAGSIIGKGGQTIVQLQRETGATIK 68
Query: 85 IA---DAIARHEERVIIISSKDND-----NVVSDAENALQQ------IAALILKDDDSNS 130
++ D ERV ++ N +++ + Q + L+ N+
Sbjct: 69 LSKSKDFYPGTTERVCLVQGSAESLLSVHNFIAEKVREVPQGGTKNDLGVLLPPQTTINA 128
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
E +K A +L++ + AG +IG G + + SGA + + +Q P +
Sbjct: 129 ERAKQA---------KLIVPNTTAGLIIGKGGATVRSIMEESGAWVQL---SQKPAGPNL 176
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYS 235
HE RVV +SG+ V A+ I ++ RE+PP+ ++ +Y S
Sbjct: 177 HE--RVVTVSGEPSQVQKAIRSIIHKSREDPPQGTTHLNISYTNS 219
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 11/143 (7%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++LI AG +IG GQ I +L+ +GATI + ++RV + G
Sbjct: 36 LKVLIPSYAAGSIIGKGGQTIVQLQRETGATIKLSKSKDF----YPGTTERVCLVQGSAE 91
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
++L+ I ++RE P + + + P Q + A ++++ + G
Sbjct: 92 SLLSVHNFIAEKVREVPQGGTKN-----DLGVLLPPQTTINAERAKQA--KLIVPNTTAG 144
Query: 265 GLIGRCGSNISRIRNESGAMIKV 287
+IG+ G+ + I ESGA +++
Sbjct: 145 LIIGKGGATVRSIMEESGAWVQL 167
>gi|358056167|dbj|GAA97907.1| hypothetical protein E5Q_04587 [Mixia osmundae IAM 14324]
Length = 531
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 21/208 (10%)
Query: 37 EGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERV 96
+ + P +A+A ++ R +V SR+ G VIG++G + IRE+ + ++ + ERV
Sbjct: 130 QAASPPGQAEAPTLIMRALVSSREAGIVIGRQGKNVADIREKAQVKAGVSKLVPGVSERV 189
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKD-----DDSNSEASKVAAGHVAANTIRLLIAG 151
+ ++ + +S A I I+ + +DS S + ++ + T+RLLI+
Sbjct: 190 LTVTGQ-----ISGVARAFGLICQTIMDNSSGIPNDSPSTYTGLSGSTL---TLRLLISS 241
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
+Q G +IG +G I+ ++ +SG T + + LP ++R+V+ISG V A+
Sbjct: 242 AQMGGVIGKAGTKIKSIQQTSG-TRMAASKELLP-----QSTERLVEISGRPEQVEKAVA 295
Query: 212 EIGNQLRENPPRQVISISPAYNYSAIRP 239
EI L E+ + V +I A++ + + P
Sbjct: 296 EIAKALVEDEAKAVGTI--AFHPANLNP 321
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 48/262 (18%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRI-------QKIREETKATIKIADAI-ARHEERVI-IISS 101
L++ +PSR++ +EG +I + ++ + + +D+ R+ R + I+
Sbjct: 26 LWQETLPSRRVAPTQPREGQQIDLRCLRASRSLDDCTSPLSFSDSYHTRYRLRPLDIMPE 85
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA--------------GHVAANTI-- 145
V D + Q +A L + DS + K A G A T+
Sbjct: 86 AAPAAAVPDVDGVAQAVANLSTTEKDSPAVQPKEDAPPQAPIRSQAASPPGQAEAPTLIM 145
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSS--GATIVILAPNQLPLCASAHESDRVVQISGDV 203
R L++ +AG +IG G+N+ +R + A + L P S+RV+ ++G +
Sbjct: 146 RALVSSREAGIVIGRQGKNVADIREKAQVKAGVSKLVPGV---------SERVLTVTGQI 196
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
V A I + +N + + SP+ Y+ + S +T +LIS + +
Sbjct: 197 SGVARAFGLICQTIMDNS-SGIPNDSPS-TYTGL----------SGSTLTLRLLISSAQM 244
Query: 264 GGLIGRCGSNISRIRNESGAMI 285
GG+IG+ G+ I I+ SG +
Sbjct: 245 GGVIGKAGTKIKSIQQTSGTRM 266
>gi|403418461|emb|CCM05161.1| predicted protein [Fibroporia radiculosa]
Length = 326
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 40/262 (15%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V ++ G +IGK G + +R+ T ++ + ERV+ +S
Sbjct: 28 LTLRALVSTKDAGVIIGKAGKNVADLRDHTGVKAGVSKVVPGVHERVLTVS--------G 79
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
E + A ++ + +N + IRLLI+ + G +IG +G I+ ++
Sbjct: 80 SVEGVAKAYALIVSQLVSANPSSPVSPNSPPPNTAIRLLISHNLMGSVIGRNGLKIKAIQ 139
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR--QVIS 227
++SGA +V + + LP ++R+V++ G ++ A+ EIG L E+ R +
Sbjct: 140 DASGARMVA-SKDMLP-----QSTERIVEVQGSSESIGRAIEEIGRCLLEDWERGQGTVL 193
Query: 228 ISPA----------------YNYSAIR------PAQPFVEPTSADYVTFEMLISESLVGG 265
P YN A R P P +PT + T + I +VG
Sbjct: 194 FHPGSGDERSGRRSSNASRRYNGDAGRGRTSPSPNAPLQQPT--NLRTQNISIPSDMVGC 251
Query: 266 LIGRCGSNISRIRNESGAMIKV 287
+IGR G+ I+ IR SG+ I +
Sbjct: 252 IIGRNGTKITEIRRLSGSKISI 273
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 29/175 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L++ AG +IG +G+N+ LR+ +G A + + P HE RV+ +SG
Sbjct: 29 TLRALVSTKDAGVIIGKAGKNVADLRDHTGVKAGVSKVVPG-------VHE--RVLTVSG 79
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISES 261
V V A I +QL P +S + +AIR +LIS +
Sbjct: 80 SVEGVAKAYALIVSQLVSANPSSPVSPNSPPPNTAIR-----------------LLISHN 122
Query: 262 LVGGLIGRCGSNISRIRNESGA-MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRV 315
L+G +IGR G I I++ SGA M+ + R ++ GS++ + A + +
Sbjct: 123 LMGSVIGRNGLKIKAIQDASGARMVASKDMLPQSTERIVEVQGSSESIGRAIEEI 177
>gi|242039711|ref|XP_002467250.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
gi|241921104|gb|EER94248.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
Length = 588
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 11/170 (6%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-IADAIARHEERVIIISSKDNDNVVS 109
+FR+++P++++G +IG +G R++++ EET+A ++ I + E+ VII + + +
Sbjct: 56 VFRMLIPAQKVGVIIGHKGERVRRLCEETRACVRIIGGHLCAAEQAVIIFGREQPEEPLP 115
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +AL ++ + D E+ V + V R+L+ QA LIG G I +
Sbjct: 116 PAMDALLRVYQQTIND-----ESLDVGSDGVIVR--RILVPSEQAESLIGEHGVMINSIM 168
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
+S I +L + P+ A E DRVV+I G V AL + + LR+
Sbjct: 169 EASQTDIRVLDGDLPPV---ALEEDRVVEIWGLPARVHKALELVASHLRK 215
>gi|301759723|ref|XP_002915742.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Ailuropoda melanoleuca]
Length = 599
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A NA VEI +LRE +++++ P N SA+
Sbjct: 320 NPERTITVKGTVEACANAEVEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 379
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 380 VLPPPAGPRGAPPAPPYHPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQ 437
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 468
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|126330639|ref|XP_001363707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
gi|395515329|ref|XP_003761858.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Sarcophilus
harrisii]
Length = 471
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 395 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 454
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 455 QYLLQNSVKQYA 466
>gi|119583080|gb|EAW62676.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_b [Homo
sapiens]
Length = 462
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 387 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ--IQ 444
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 445 NAQYLLQ 451
>gi|66910286|gb|AAH96867.1| Heterogeneous nuclear ribonucleoprotein K, like [Danio rerio]
gi|182889168|gb|AAI64732.1| Hnrpkl protein [Danio rerio]
Length = 431
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V R+++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DTNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ D D + E L+ I L E + +G
Sbjct: 78 SVPDSSG--PERILSVSA-DIDTI---GEILLKIIPTL---------EEYQHYSGTDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGGKP 176
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + E P + +P P + DY F M+ E
Sbjct: 177 ERVVECIKVILELIAEAPIK-----------GRAQPYDPNFYDETYDYGGFTMMYEE 222
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 36/190 (18%)
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
I +D D S+ + ++ A +D +A K + +R+L+ AG +I
Sbjct: 5 IEQQDEDTTFSNTDTNGKRPA-----EDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVI 59
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+NI+ LR A++ + + +R++ +S D+ + L++I
Sbjct: 60 GKGGKNIKALRTDYNASVSV---------PDSSGPERILSVSADIDTIGEILLKI----- 105
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
+ ++ +YS T D +LI +SL GG+IG G+ I +R
Sbjct: 106 ------IPTLEEYQHYSG----------TDFD-CELRLLIHQSLAGGIIGVKGAKIKELR 148
Query: 279 NESGAMIKVY 288
+ IK++
Sbjct: 149 ENTQTTIKLF 158
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 356 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 415
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 416 QYLLQNSVKQYSGRFF 431
>gi|74195705|dbj|BAE39657.1| unnamed protein product [Mus musculus]
Length = 463
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +I K G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIVKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|350591798|ref|XP_003483335.1| PREDICTED: replication factor C (activator 1) 4, 37kDa [Sus scrofa]
Length = 578
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 139 VSSPSPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 196
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 197 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 250
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 251 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 298
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A NA +EI +LRE +++++ P N SA+
Sbjct: 299 NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 358
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 359 VLPPPAGPRGAPPAPPYHPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQ 416
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 417 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 447
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 395 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 454
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 455 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 502
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 503 VIGKGGKTVNELQNLTSAEVIV 524
>gi|312085525|ref|XP_003144713.1| hypothetical protein LOAG_09137 [Loa loa]
Length = 327
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 39/226 (17%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
+GKR+R+D S K A+ + L R++V SR G +IGK+G ++ I+ E AT+
Sbjct: 21 TAGKRQRQD-----SYQKALAEGKYEL-RLLVTSRGAGAIIGKKGESVKNIQAECDATVS 74
Query: 85 IADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT 144
+ D ++ ERV+ +V+ EN ++ + +I + D+ + + +
Sbjct: 75 VPD--SQTPERVV--------QLVATVENVVRCVEMIIARIDEVHDNQDR-------DSE 117
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+++L+ S AG +IG G I++LR +G + + + ++R++QI+G
Sbjct: 118 LKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVYSE------CCPQSTERIIQINGKPE 171
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
++ LV I + L+E P + P+ Y +I F +P A+
Sbjct: 172 KIVACLVTIISTLKEIPIK-----GPSRPYESI-----FFDPVVAN 207
>gi|432109005|gb|ELK33475.1| Heterogeneous nuclear ribonucleoprotein K [Myotis davidii]
Length = 438
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 62 GKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSDAENALQQIA 119
G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N +N+++Q A
Sbjct: 374 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 433
>gi|156372967|ref|XP_001629306.1| predicted protein [Nematostella vectensis]
gi|156216303|gb|EDO37243.1| predicted protein [Nematostella vectensis]
Length = 419
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 38/197 (19%)
Query: 29 RRREDGEIEGSDPKRRAKAQDV------LFRIIVPSRQIGKVIGKEGHRIQKIREETKAT 82
+R DG+ G + KR ++ DV RI++ S+ G +IGK G I+++R E A
Sbjct: 27 KRPADGDYNG-NVKRMRESSDVDSNAPTTLRILIQSKDAGGIIGKGGTNIRRLRTEYNAV 85
Query: 83 IKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA 142
+ + D ERV+ I++ ++AL +A ++ K +V GH
Sbjct: 86 VNVPDT--NSNERVLTITAP--------RQSALDILAEVVPK-------IGEVQYGH--- 125
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
I++L+ SQ G +IG +G I+++R SGA + + A + LP + ++RVV +SG
Sbjct: 126 -EIQMLVQRSQVGSIIGRAGYKIKEIREGSGANVKVFA-DCLP-----NSTERVVTMSGS 178
Query: 203 ----VPAVLNALVEIGN 215
V V N LV I N
Sbjct: 179 AETIVKCVENVLVAIAN 195
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 37/148 (25%)
Query: 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
A T+R+LI AG +IG G NI +LR A V+ P+ + ++RV+ I+
Sbjct: 51 APTTLRILIQSKDAGGIIGKGGTNIRRLRTEYNA--VVNVPD-------TNSNERVLTIT 101
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ L+ L E+ ++ E Y + +ML+
Sbjct: 102 APRQSALDILAEVVPKIGE----------VQYGHE------------------IQMLVQR 133
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVY 288
S VG +IGR G I IR SGA +KV+
Sbjct: 134 SQVGSIIGRAGYKIKEIREGSGANVKVF 161
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVIIISSKDNDNVVSD 110
+++V Q+G +IG+ G++I++IRE + A +K+ AD + ERV+ +S + +V
Sbjct: 127 IQMLVQRSQVGSIIGRAGYKIKEIREGSGANVKVFADCLPNSTERVVTMSGSA-ETIVKC 185
Query: 111 AENALQQIAALILK 124
EN L IA LK
Sbjct: 186 VENVLVAIANAPLK 199
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI+ IR A IKI D + +R+I I+ N ++ A+
Sbjct: 347 QVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKIDDPLPGSNDRIITITG--NQEQINHAQ 404
Query: 113 NALQQ 117
LQQ
Sbjct: 405 YLLQQ 409
>gi|13384620|ref|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
gi|14165435|ref|NP_112552.1| heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens]
gi|16923998|ref|NP_476482.1| heterogeneous nuclear ribonucleoprotein K [Rattus norvegicus]
gi|114625188|ref|XP_001155028.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 17
[Pan troglodytes]
gi|114625190|ref|XP_001155252.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 21
[Pan troglodytes]
gi|126334813|ref|XP_001368466.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Monodelphis domestica]
gi|296189583|ref|XP_002742833.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Callithrix jacchus]
gi|332236649|ref|XP_003267512.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Nomascus leucogenys]
gi|332236653|ref|XP_003267514.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Nomascus leucogenys]
gi|338719650|ref|XP_003364038.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475601|ref|XP_003809222.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2 [Pan
paniscus]
gi|397475605|ref|XP_003809224.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4 [Pan
paniscus]
gi|402897757|ref|XP_003911911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Papio anubis]
gi|402897759|ref|XP_003911912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Papio anubis]
gi|403300940|ref|XP_003941170.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Saimiri boliviensis boliviensis]
gi|410978215|ref|XP_003995491.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Felis catus]
gi|410978217|ref|XP_003995492.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Felis catus]
gi|426362133|ref|XP_004048235.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Gorilla gorilla gorilla]
gi|426362135|ref|XP_004048236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Gorilla gorilla gorilla]
gi|48429097|sp|P61980.1|HNRPK_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=dC stretch-binding protein;
Short=CSBP
gi|48429103|sp|P61978.1|HNRPK_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=Transformation up-regulated
nuclear protein; Short=TUNP
gi|48429104|sp|P61979.1|HNRPK_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|241478|gb|AAB20770.1| heterogeneous nuclear ribonucleoprotein complex K [Homo sapiens]
gi|409389|dbj|BAA04566.1| dC-stretch binding protein [Rattus norvegicus]
gi|12847547|dbj|BAB27614.1| unnamed protein product [Mus musculus]
gi|15929044|gb|AAH14980.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|119583079|gb|EAW62675.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Homo
sapiens]
gi|148709316|gb|EDL41262.1| mCG6893, isoform CRA_a [Mus musculus]
gi|149039793|gb|EDL93909.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Rattus
norvegicus]
gi|380812324|gb|AFE78036.1| heterogeneous nuclear ribonucleoprotein K isoform b [Macaca
mulatta]
gi|410337441|gb|JAA37667.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401355|gb|JAA47567.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 463
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|74144445|dbj|BAE36070.1| unnamed protein product [Mus musculus]
Length = 463
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|149036630|gb|EDL91248.1| similar to Pol(yrC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
(predicted) [Rattus norvegicus]
Length = 337
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 79 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 133
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 134 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 182
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 183 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQQS-----HF 229
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 230 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 289
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 290 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 331
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 94/176 (53%), Gaps = 23/176 (13%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK+G +++IREE+ A I I++ ER+I ++ N A+ +
Sbjct: 4 KEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN---------AIFKA 52
Query: 119 AALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
A+I+ ++D NS + A T+RL++ +Q G LIG G I+++R S+GA +
Sbjct: 53 FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 112
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVISI 228
+ A + LP + ++R + I+G +V + +I L ++P +V++I
Sbjct: 113 QV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 162
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 25/139 (17%)
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
G + G +IG G++++++R SGA I I N C +R++ ++G A+ A
Sbjct: 3 GKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPTNAIFKAF 53
Query: 211 VEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRC 270
I ++L E+ I+ S + +A RP VT +++ + G LIG+
Sbjct: 54 AMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQCGSLIGKG 97
Query: 271 GSNISRIRNESGAMIKVYG 289
G I IR +GA ++V G
Sbjct: 98 GCKIKEIRESTGAQVQVAG 116
>gi|90081810|dbj|BAE90186.1| unnamed protein product [Macaca fascicularis]
Length = 300
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 65/287 (22%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 60 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 118
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG---MSGQNI 165
++QI ++L +S + + + A+T ++ AG QA + G + ++
Sbjct: 119 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDL 170
Query: 166 EKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216
KL + G T +LPL +S + + Q SG
Sbjct: 171 TKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSG--------------- 215
Query: 217 LRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 216 LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKINE 247
Query: 277 IRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
IR SGA IK+ R I G+ ++LA+ ++ + S++
Sbjct: 248 IRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 294
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 75 IREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASK 134
+REE+ A I I++ ER++ I+ +DA + A ++D NS ++
Sbjct: 1 MREESGARINISEG--NCPERIVTITGP------TDAIFKAFAMIAYKFEEDIINSMSNS 52
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
A T+RL++ SQ G LIG G I+++R S+GA + + A + LP + ++
Sbjct: 53 PATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP-----NSTE 105
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPR 223
R V ISG A++ + +I + E+PP+
Sbjct: 106 RAVTISGTPDAIIQCVKQICVVMLESPPK 134
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R SGA I I + + +R+V I+G A+ A I + E+
Sbjct: 1 MREESGARINI---------SEGNCPERIVTITGPTDAIFKAFAMIAYKFEED------- 44
Query: 228 ISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
N + PA TS VT +++ S G LIG+ GS I IR +GA ++V
Sbjct: 45 ---IINSMSNSPA------TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 95
Query: 288 YG 289
G
Sbjct: 96 AG 97
>gi|354500000|ref|XP_003512091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Cricetulus griseus]
Length = 463
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|1083569|pir||A54143 kappa-B motif-binding phosphoprotein - mouse
Length = 464
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|14165437|ref|NP_112553.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|14165439|ref|NP_002131.2| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197101649|ref|NP_001126766.1| heterogeneous nuclear ribonucleoprotein K [Pongo abelii]
gi|388454448|ref|NP_001253875.1| heterogeneous nuclear ribonucleoprotein K [Macaca mulatta]
gi|114625208|ref|XP_001155079.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 18
[Pan troglodytes]
gi|114625210|ref|XP_001155315.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 22
[Pan troglodytes]
gi|149758457|ref|XP_001489114.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Equus caballus]
gi|296189573|ref|XP_002742828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Callithrix jacchus]
gi|296189575|ref|XP_002742829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Callithrix jacchus]
gi|296189579|ref|XP_002742831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Callithrix jacchus]
gi|301758414|ref|XP_002915066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Ailuropoda melanoleuca]
gi|332236647|ref|XP_003267511.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Nomascus leucogenys]
gi|332236651|ref|XP_003267513.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Nomascus leucogenys]
gi|344272026|ref|XP_003407837.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Loxodonta africana]
gi|395819298|ref|XP_003783031.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Otolemur
garnettii]
gi|397475599|ref|XP_003809221.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1 [Pan
paniscus]
gi|397475603|ref|XP_003809223.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3 [Pan
paniscus]
gi|397475609|ref|XP_003809226.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6 [Pan
paniscus]
gi|402897753|ref|XP_003911909.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Papio anubis]
gi|402897755|ref|XP_003911910.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Papio anubis]
gi|402897761|ref|XP_003911913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Papio anubis]
gi|403300938|ref|XP_003941169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Saimiri boliviensis boliviensis]
gi|403300942|ref|XP_003941171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Saimiri boliviensis boliviensis]
gi|403300944|ref|XP_003941172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Saimiri boliviensis boliviensis]
gi|410978211|ref|XP_003995489.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Felis catus]
gi|410978213|ref|XP_003995490.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Felis catus]
gi|426362129|ref|XP_004048233.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Gorilla gorilla gorilla]
gi|426362131|ref|XP_004048234.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Gorilla gorilla gorilla]
gi|75056718|sp|Q5R5H8.1|HNRPK_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|75075750|sp|Q4R4M6.1|HNRPK_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|12653175|gb|AAH00355.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|13879427|gb|AAH06694.1| Hnrpk protein [Mus musculus]
gi|26347481|dbj|BAC37389.1| unnamed protein product [Mus musculus]
gi|38197650|gb|AAH61867.1| Hnrpk protein [Rattus norvegicus]
gi|48145659|emb|CAG33052.1| HNRPK [Homo sapiens]
gi|55732576|emb|CAH92988.1| hypothetical protein [Pongo abelii]
gi|58475965|gb|AAH89328.1| Hnrpk protein [Mus musculus]
gi|61359196|gb|AAX41682.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|67971214|dbj|BAE01949.1| unnamed protein product [Macaca fascicularis]
gi|74139420|dbj|BAE40851.1| unnamed protein product [Mus musculus]
gi|74141211|dbj|BAE35915.1| unnamed protein product [Mus musculus]
gi|74178242|dbj|BAE29905.1| unnamed protein product [Mus musculus]
gi|74183280|dbj|BAE22563.1| unnamed protein product [Mus musculus]
gi|74185026|dbj|BAE39121.1| unnamed protein product [Mus musculus]
gi|119583081|gb|EAW62677.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_c [Homo
sapiens]
gi|123979648|gb|ABM81653.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|123994453|gb|ABM84828.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|158256108|dbj|BAF84025.1| unnamed protein product [Homo sapiens]
gi|197692227|dbj|BAG70077.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197692481|dbj|BAG70204.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|351696771|gb|EHA99689.1| Heterogeneous nuclear ribonucleoprotein K [Heterocephalus glaber]
gi|380812328|gb|AFE78038.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|380812330|gb|AFE78039.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|410337439|gb|JAA37666.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401379|gb|JAA47578.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 464
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|453088188|gb|EMF16228.1| KH domain RNA-binding protein [Mycosphaerella populorum SO2202]
Length = 369
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 69/293 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R IV S++ G +IGK G + +R++T ++ + +RV+ ++ +++
Sbjct: 43 LTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVSKVVPGVHDRVLTVT-----GILN 97
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANT--IRLLIAGSQAGCLIGMSGQNIEK 167
+A +A ++K VAA A NT IRLLI+ +Q G +IG G I++
Sbjct: 98 GIADAYGLVADCLVKGAPQMGIGGSVAA---APNTHPIRLLISHNQMGTIIGRQGLKIKQ 154
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
++++SG +V LP ++R+V++ G + A+ EIG L ++ R +
Sbjct: 155 IQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPDGIQKAVWEIGKCLVDDEQRGYGT 208
Query: 228 I--SPAYNYSAIRPAQP---------FVEPTS-------ADYV----------------- 252
+ SP+ PA P + P S AD+
Sbjct: 209 VLYSPSVRVGGGAPAAPLNGTGESRGYNAPRSYNRTGNGADFTSGAPASYPPRRNGASEG 268
Query: 253 ------------------TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T + I +VG +IGR GS IS IR SGA I +
Sbjct: 269 GGGGSGPPPRVEEGEDIQTQNISIPADMVGCIIGRGGSKISEIRKSSGARISI 321
>gi|300795407|ref|NP_001179433.1| insulin-like growth factor 2 mRNA-binding protein 2 [Bos taurus]
gi|296491332|tpg|DAA33395.1| TPA: insulin-like growth factor 2 mRNA binding protein 2 isoform 1
[Bos taurus]
Length = 599
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A NA +EI +LRE +++++ P N SA+
Sbjct: 320 NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 379
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 380 VLPPPAGPRGAPPAPPYHPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQ 437
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 468
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|351705765|gb|EHB08684.1| Insulin-like growth factor 2 mRNA-binding protein 3 [Heterocephalus
glaber]
Length = 546
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 107 RQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 166
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 167 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 212
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 213 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 268
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFE--------ML 257
+ S++ P N +A+ P PTS Y FE +
Sbjct: 269 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 328
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I VG +IG+ G +I ++ +GA IK+
Sbjct: 329 IPAPSVGAIIGKQGQHIKQLSRFAGASIKI 358
>gi|291400299|ref|XP_002716509.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2-like
isoform 1 [Oryctolagus cuniculus]
Length = 599
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 136/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A EI +LRE +++++ P N SA+
Sbjct: 320 NPERTITVKGTVEACASAEAEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 379
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 380 MLPPPAGPRGAPPTAPYHPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQ 437
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 468
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|126723252|ref|NP_001075594.1| heterogeneous nuclear ribonucleoprotein K [Oryctolagus cuniculus]
gi|12230546|sp|O19049.1|HNRPK_RABIT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|2644968|emb|CAA05815.1| hnRNP-K protein [Oryctolagus cuniculus]
Length = 463
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 FKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHFK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|67536752|ref|XP_662150.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|40741699|gb|EAA60889.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|259482624|tpe|CBF77283.1| TPA: KH domain RNA-binding protein (AFU_orthologue; AFUA_2G02780)
[Aspergillus nidulans FGSC A4]
Length = 542
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 140/347 (40%), Gaps = 79/347 (22%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G++E + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 208 DEGDLEVAPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 267
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ +S A +A +L+ A ++ G + +N IR
Sbjct: 268 GVHDRVLTVT-----GALSGTARAYALVAKGLLEG------APQMGMGGIVSNNGTHPIR 316
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 317 LLISHNQMGTIIGRQGLKIKHIQDASGVRMVA-QKEMLP-----QSTERIVEVQGTPEGI 370
Query: 207 LNALVEIGNQLRENPPRQVISI---------------------SPAYNYSAIRP------ 239
A+ EIG L ++ R +I S +YN RP
Sbjct: 371 EKAIWEIGKCLIDDWQRGTGTILYNPAVRSSVGSGSIQHNGGNSDSYNS---RPYNRTGN 427
Query: 240 ----------------------AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRI 277
P V + T + I +VG +IGR G+ I+ I
Sbjct: 428 GADFSDQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGTKITEI 487
Query: 278 RNESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
R SGA I + E R GSAQ A ++ +Y L
Sbjct: 488 RRSSGARISIAKAPHDETGERMFTIMGSAQ----ANEKALYLLYENL 530
>gi|449266969|gb|EMC77947.1| Insulin-like growth factor 2 mRNA-binding protein 2, partial
[Columba livia]
Length = 522
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 140/342 (40%), Gaps = 79/342 (23%)
Query: 6 EITVNPTVSVVTEPEP-RHDVSGKRRREDGEIEG--SDPKRRAKAQDVLFRIIVPSRQIG 62
+I+ P V + P P R G RE G G S PK+ + R++VP++ +G
Sbjct: 72 KISYIPDEEVSSSPPPQRSRRGGHSSRERGSSPGGSSQPKQL----EFPLRMLVPTQFVG 127
Query: 63 KVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAA 120
+IGKEG I+ + ++T++ + I + E+ + I ++ + A + I
Sbjct: 128 AIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEG------CSEACRMILD 181
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
++ K+ D A ++ +++L S G LIG G+N++K+ +G I I
Sbjct: 182 IMQKEADETKSAEEIP--------LKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISP 233
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNY 234
L + + +R + + G A A VEI +LRE V++++ P N
Sbjct: 234 LQDL----TIYNPERTITVKGSTEACSKAQVEIMKKLREAYENDVVAVNQQANLIPGLNL 289
Query: 235 SAI----------------------RPAQPFVEPTSADYVT------------------- 253
+A+ P PF +S+ Y++
Sbjct: 290 NALGIFSTGLSMLPSTPGARGAAAATPYHPFA--SSSAYLSGLYGAPPGSAFPHQHPLPE 347
Query: 254 ---FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
+ I VG +IG+ G +I ++ +GA IK+ +G
Sbjct: 348 QEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEG 389
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIII 99
P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER++II
Sbjct: 340 PHQHPLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDASERMVII 399
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+ A +I + +++ N + H+ + AG +IG
Sbjct: 400 TGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIKVPSF-------AAGRVIG 447
Query: 160 MSGQNIEKLRNSSGATIVI 178
G+ + +L+N + A +++
Sbjct: 448 KGGKTVNELQNLTSAEVIV 466
>gi|72164650|ref|XP_794805.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Strongylocentrotus purpuratus]
Length = 341
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V FR++V S + G VIGK G I+++R E AT+ I D + +RV+ I V +
Sbjct: 9 VTFRLLVSSNKAGGVIGKGGQNIKRLRSEYNATVNIPD--SSGPDRVLQI-------VAN 59
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHV--AANTIRLLIAGSQAGCLIGMSGQNIEK 167
EN L I LI + E S + G T+ +L+ SQ G +IG G I++
Sbjct: 60 SRENGLDIIKELIPLIRE---EVSPFSDGEADPYTTTLSVLVQTSQVGAIIGRGGSKIKE 116
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
LR S+ + +L LP + ++R VQI+G AVL A+ EI E P
Sbjct: 117 LRQSTETKVKVLQ-ECLP-----YSTERRVQINGAPDAVLLAIGEIYVTCSEAP 164
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T RLL++ ++AG +IG GQNI++LR+ AT+ I + DRV+QI
Sbjct: 10 TFRLLVSSNKAGGVIGKGGQNIKRLRSEYNATVNI---------PDSSGPDRVLQI---- 56
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVT-FEMLISESL 262
V N+ REN + + P PF + + Y T +L+ S
Sbjct: 57 --VANS--------RENGLDIIKELIPLIR----EEVSPFSDGEADPYTTTLSVLVQTSQ 102
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYG-GKGEQKHRHIQFGGSAQQVALA 311
VG +IGR GS I +R + +KV R +Q G+ V LA
Sbjct: 103 VGAIIGRGGSKIKELRQSTETKVKVLQECLPYSTERRVQINGAPDAVLLA 152
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P+ +G VIG+ G RI+ IR ++A I+IA+ + E+RVI I + VS A+
Sbjct: 269 QVTIPNDLVGAVIGRGGERIRNIRSRSQAEIEIANPLPEAEDRVITI--RGTQEQVSHAQ 326
Query: 113 NALQ 116
LQ
Sbjct: 327 FLLQ 330
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
VTF +L+S + GG+IG+ G NI R+R+E A + + G + I
Sbjct: 9 VTFRLLVSSNKAGGVIGKGGQNIKRLRSEYNATVNIPDSSGPDRVLQI 56
>gi|90086375|dbj|BAE91740.1| unnamed protein product [Macaca fascicularis]
Length = 283
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 25 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 79
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 80 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRC 128
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q
Sbjct: 129 SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLDLAKLNQVARQQS-----HF 175
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 176 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 235
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 236 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 277
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
++D NS + A T+RL++ +Q G LIG G I+++R S+GA + + A + L
Sbjct: 7 EEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDML 65
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPRQVISI 228
P + ++R + I+G +V + +I L ++P +V++I
Sbjct: 66 P-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTI 108
>gi|61369343|gb|AAX43320.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
Length = 465
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|354499998|ref|XP_003512090.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Cricetulus griseus]
Length = 464
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|281337729|gb|EFB13313.1| hypothetical protein PANDA_003005 [Ailuropoda melanoleuca]
Length = 453
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|255559157|ref|XP_002520600.1| conserved hypothetical protein [Ricinus communis]
gi|223540199|gb|EEF41773.1| conserved hypothetical protein [Ricinus communis]
Length = 161
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN-DNV 107
D ++R+IVP ++G +IG++G I+++ ET+A I+I D +R+++IS K+ +
Sbjct: 26 DNVYRLIVPVAKVGSIIGRKGELIKQMCIETRARIRILDGPPSISDRIVLISGKEEPEAA 85
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
+S A +A+ ++ + +A+ A A +++RLL+A SQA LIG G I+
Sbjct: 86 LSPAIDAVLRVFKRVSGPSAGEGDATGSAVAGAAFSSVRLLVASSQAINLIGKQGSTIKS 145
Query: 168 LRNS 171
+ S
Sbjct: 146 ILES 149
>gi|296189557|ref|XP_002742821.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Callithrix
jacchus]
Length = 375
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 19/164 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IR+E+ A IKI + ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRKESGARIKILE--GNCPERIITLTGPTNA---- 67
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+ A +I K ++D NS +K A T+RL++ +Q G LIG G I+++
Sbjct: 68 ----IFKAFAMIIYKLEEDINSSMTKSTAASRLV-TLRLVVPATQCGSLIGKGGCKIKEI 122
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
R S+GA + + A + LP + ++R + I+G VP + V+
Sbjct: 123 RKSTGAQVQV-AGDMLP-----NSTERAITIAG-VPQSVTKCVK 159
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 130/299 (43%), Gaps = 42/299 (14%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHE 93
+I S K A ++ V R++VP+ Q G +IGK G +I++IR+ T A +++A D +
Sbjct: 82 DINSSMTKSTAASRLVTLRLVVPATQCGSLIGKGGCKIKEIRKSTGAQVQVAGDMLPNST 141
Query: 94 ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR--LLIAG 151
ER I I+ V ++QI L++ + S+S KV R + AG
Sbjct: 142 ERAITIA-----GVPQSVTKCVKQIC-LVMLETLSHSPQGKVKTILYQPMPSRSPVTCAG 195
Query: 152 SQAGCLIGMSGQNIEKLRNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
Q C +++G AT + P PL A + + + P L
Sbjct: 196 GQDRC------------SDAAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLNLA 235
Query: 209 ALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLV 263
L ++ Q + ++ I + P V+ A +T E+ I +L+
Sbjct: 236 KLNQVARQ-----QSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQITHELTIPNNLI 290
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
G +IGR G+NI+ IR SGA IK+ R + GSA ++LA+ + + S+
Sbjct: 291 GCIIGRQGTNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLIKARLSSE 349
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 26/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I IL N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIRKESGARIKILEGN----CP-----ERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I +L E+ I+ S + +A R VT +++ +
Sbjct: 66 NAIFKAFAMIIYKLEED-----INSSMTKSTAASR------------LVTLRLVVPATQC 108
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 109 GSLIGKGGCKIKEIRKSTGAQVQVAG 134
>gi|392353290|ref|XP_003751453.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++L+ ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELQENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + L E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLLSESPIK-----------GXAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I ++ + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELQENTQTTIKLF 181
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IK + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKTDEPLEGSEDRIITITGTQDQIQNT 447
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 448 QYLLQNSVKQYSGKFF 463
>gi|380812326|gb|AFE78037.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
Length = 459
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 383 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 442
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 443 QYLLQNSVKQYA 454
>gi|169622886|ref|XP_001804851.1| hypothetical protein SNOG_14668 [Phaeosphaeria nodorum SN15]
gi|160704873|gb|EAT77860.2| hypothetical protein SNOG_14668 [Phaeosphaeria nodorum SN15]
Length = 357
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 62/284 (21%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS------SKD 103
+ R IV S++ G +IGK G + +R+ET ++ + +RV+ ++ SK
Sbjct: 45 LTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGSLSGISKA 104
Query: 104 NDNVVSDAENALQQIAAL----ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
V A+ L A+ +++ D ++ V A IRLLI+ +Q G +IG
Sbjct: 105 YGLV---AKGLLDGAPAMGMGGVVRTDGTHQRKLTVTA-------IRLLISHNQMGTIIG 154
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I++++++SG +V LP ++R+V++ G ++ A+ EIG L +
Sbjct: 155 RQGLKIKQIQDASGVRMV-AQKEMLP-----QSTERIVEVQGSPSSIEKAIWEIGKCLID 208
Query: 220 NPPRQV-----------------------------ISISPAYNYS-------AIRPAQPF 243
+ R S S +YS A RP P
Sbjct: 209 DHERGYGTVLYNPAGGATAGGMGGRSYNRTGNGADFSDSAPTSYSRRSGSDAASRPPPPT 268
Query: 244 VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ + T + I +VG +IGR GS IS IR SGA I +
Sbjct: 269 HDEDGVELQTQNISIPSDMVGCIIGRGGSKISEIRKTSGARISI 312
>gi|149039794|gb|EDL93910.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_b [Rattus
norvegicus]
Length = 386
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
>gi|444727083|gb|ELW67590.1| Insulin-like growth factor 2 mRNA-binding protein 3 [Tupaia
chinensis]
Length = 644
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 141/316 (44%), Gaps = 54/316 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 258 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 317
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 318 PEGTSA------ACKSILEIMYKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 363
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 364 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 419
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 420 ENDIASMNLQAHLIPGLNLNALGLFPPTSGIPPPTSGPPSAMTPPYPQFEQSETETVHLF 479
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIK----VYGGKGEQKHRHIQFGGSAQQVAL-AK 312
VG +IG+ G +I ++ +GA IK +YG E+ F ++V L A
Sbjct: 480 IPALSVGAIIGKQGQHIKQLSRFAGASIKAQGRIYGKIKEE-----NFVSPKEEVKLEAH 534
Query: 313 QRVDEYIYSQLIQQAG 328
RV + ++I + G
Sbjct: 535 IRVPSFAAGRVIGKGG 550
>gi|238883031|gb|EEQ46669.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 365
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 122/302 (40%), Gaps = 63/302 (20%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR ET I+ I ER++ +S K + D
Sbjct: 71 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGK-----LDDC 125
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIE 166
AL A ++ + + + NT +RLLI SQ G LIG G I+
Sbjct: 126 AKALSYFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPNSQMGTLIGSKGARIQ 185
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+L+N+ ++ I + + LP ++R+V++ G V + ++L ++I
Sbjct: 186 QLQNNFNISM-IASKSFLP-----GSNERLVELQGTVDDLYDSL-------------RII 226
Query: 227 SISPAYNYSAIRPAQPFVEPTSADY---------------------------------VT 253
S ++S+I +V P Y T
Sbjct: 227 SRCLIEDFSSIVGTTYYV-PRGNTYNNSHSHSHNNNNNTNTNNNNNNNNNTHGSGGNKTT 285
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQ 313
+ +VG LIG+ GS I +R SGAMI + + R GS+ V AKQ
Sbjct: 286 DTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTITGSSHAVDKAKQ 345
Query: 314 RV 315
+
Sbjct: 346 MI 347
>gi|242785360|ref|XP_002480578.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218720725|gb|EED20144.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 367
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 135/347 (38%), Gaps = 76/347 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
E GE+E AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 29 ESGELEEQPKTDEEYAQAILTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQ 88
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A +V G V N IR
Sbjct: 89 GVHDRVLTVTG-----ALQGCARAYSIVAKGLLEG------APQVGMGGVVQNNGTHPIR 137
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 138 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 191
Query: 207 LNALVEIGNQLRENPPRQVISI--SPAYNYSAIRPAQ----------------------- 241
A+ EIG L ++ R ++ +PA S Q
Sbjct: 192 EKAVWEIGKCLIDDWQRGTGTVLYNPAVRVSIGGSGQLNHNGDRTGGSYGGGRSYNRTGN 251
Query: 242 ------------------------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRI 277
P V + T + I +VG +IGR GS IS I
Sbjct: 252 GADFSEPSGGYNRRGSGDNGNRNLPLVTDDGEEVQTQNISIPADMVGCIIGRGGSKISEI 311
Query: 278 RNESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
R SGA I + E R GSAQ A ++ +Y L
Sbjct: 312 RRSSGARISIAKAPHDETGERMFTIMGSAQ----ANEKALYLLYENL 354
>gi|50311087|ref|XP_455567.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644703|emb|CAG98275.1| KLLA0F10703p [Kluyveromyces lactis]
Length = 417
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R++ +Q KV+G +G R+ +I+ ET I ++D I ERVI + K +
Sbjct: 69 LRMLCLMKQASKVVGGKGERVNRIKSETNTRINVSDNINGVMERVIFVRGK-----CEEV 123
Query: 112 ENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +I I DDDSN + + + LLI GC+IG G + ++
Sbjct: 124 ARAFGKIVRAINNESDDDSNERSLPLV--------VNLLIPHHFMGCIIGRQGSRLHEIE 175
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
+ S A + + +P QLP+ +DR++ ++G A+ A IG + EN
Sbjct: 176 DLSAARL-MASPQQLPM-----SNDRILSLTGVADAIHIATYYIGQTILEN 220
>gi|440899520|gb|ELR50813.1| Insulin-like growth factor 2 mRNA-binding protein 2 [Bos grunniens
mutus]
Length = 597
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 158 VSSPSPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 215
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 216 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 269
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 270 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 317
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A NA +EI +LRE +++++ P N SA+
Sbjct: 318 NPERTITVKGTVEACANAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 377
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 378 VLPPPAGPRGAPPAPPYHPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQ 435
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 436 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 466
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 414 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 473
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 474 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 521
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 522 VIGKGGKTVNELQNLTSAEVIV 543
>gi|281348784|gb|EFB24368.1| hypothetical protein PANDA_018514 [Ailuropoda melanoleuca]
Length = 346
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 46/311 (14%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII--SSKD 103
+ ++++PS G +IGK G I ++++ET ATIK++ D ERV ++ +++
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEA 91
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ V S +++I + K + N + A +L++ S AG +IG G
Sbjct: 92 LNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGA 151
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP-P 222
++ + SGA + + +Q P + E RVV +SG+ V A+ I +++E+P
Sbjct: 152 TVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKVQEDPQS 206
Query: 223 RQVISIS------PAYN-------YSAIRPAQPFVEPTSADYVTFEMLISES-------- 261
++IS P N Y++ P + ++T E L +ES
Sbjct: 207 SSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAGAAGGFLTAEKLAAESAKELVEIA 266
Query: 262 ----LVGGLIGRCGSNISRIRNESGAMIKVYGGKGE----QKHRHIQFGGSAQQVALAKQ 313
LVG ++G+ G + + +GA I++ KGE ++R + GS A
Sbjct: 267 VPENLVGAILGKGGKTLVEYQELTGARIQI-SKKGEFLPGTRNRRVTITGSP-----AAT 320
Query: 314 RVDEYIYSQLI 324
+ +Y+ SQ +
Sbjct: 321 QAAQYLISQRV 331
>gi|426343191|ref|XP_004038198.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
[Gorilla gorilla gorilla]
Length = 376
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 123/256 (48%), Gaps = 31/256 (12%)
Query: 48 QDVLFRI-IVPSRQ-IGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKD 103
++ F+I +P + +G +IGKEG I+ I ++T++ + I + E+ V I ++ +
Sbjct: 10 ENYSFKISYIPDEEFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPE 69
Query: 104 NDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
+ A + I ++ K+ D A ++ +++L G LIG G+
Sbjct: 70 GTS------EACRMILEIMQKEADETKLAEEIP--------LKILAHNGLVGRLIGKEGR 115
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
N++K+ + +G I I + L S + +R + + G V A +A +EI +LRE
Sbjct: 116 NLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACASAEIEIMKKLREAFEN 171
Query: 224 QVISISPAYNY-SAIRPAQ---PFVEPTSADYVTFE---MLISESLVGGLIGRCGSNISR 276
+++++ Y S++ P PF P Y E + I VG +IG+ G++I +
Sbjct: 172 DMLAVNTHSGYFSSLYPHHQFGPF--PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQ 229
Query: 277 IRNESGAMIKVYGGKG 292
+ +GA IK+ +G
Sbjct: 230 LARFAGASIKIAPAEG 245
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 193 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 252
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 253 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 300
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 301 VIGKGGKTVNELQNLTSAEVIV 322
>gi|460789|emb|CAA51267.1| transformation upregulated nuclear protein [Homo sapiens]
Length = 464
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQDFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|70989127|ref|XP_749413.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|66847044|gb|EAL87375.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|159128828|gb|EDP53942.1| KH domain RNA-binding protein [Aspergillus fumigatus A1163]
Length = 355
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 140/345 (40%), Gaps = 74/345 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G++E + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 19 DEGDMEVTPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 78
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A ++ G + N +R
Sbjct: 79 GVHDRVLTVTGP-----LQGTARAYALVAKGLLEG------APQMGMGGIVNNNGTHPVR 127
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 128 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 181
Query: 207 LNALVEIGNQLRENPPRQVISI------------SPAYNYSAI------RP--------- 239
A+ EIG L ++ R +I S + N S++ RP
Sbjct: 182 EKAVWEIGKCLIDDWQRGTGTILYNPAVRASVGGSTSMNTSSVGNGYSSRPYNRTGNGAD 241
Query: 240 --------------------AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRN 279
P V + T + I +VG +IGR GS I+ IR
Sbjct: 242 FSDGQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSKITEIRR 301
Query: 280 ESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
SGA I + E R GSAQ A ++ +Y L
Sbjct: 302 SSGARISIAKAPHDETGERMFTIMGSAQ----ANEKALYLLYENL 342
>gi|148709317|gb|EDL41263.1| mCG6893, isoform CRA_b [Mus musculus]
gi|148709318|gb|EDL41264.1| mCG6893, isoform CRA_b [Mus musculus]
Length = 368
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
>gi|119583084|gb|EAW62680.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_f [Homo
sapiens]
Length = 440
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ + I + + E+P + +P P + DY F M+ +
Sbjct: 179 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 221
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 423
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 424 QYLLQNSVKQYA 435
>gi|338723967|ref|XP_001497902.3| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Equus caballus]
Length = 638
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 121/271 (44%), Gaps = 45/271 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 248 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 307
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 308 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 353
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + I G+V A EI ++RE+
Sbjct: 354 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITIKGNVETCAKAEEEIMKKIRESY 409
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFE---------M 256
+ S++ P N +A+ P PTS Y FE +
Sbjct: 410 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQQSETETVHL 469
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I VG +IG+ G +I ++ +GA IK+
Sbjct: 470 FIPALSVGAIIGKQGQHIKQLSRFAGASIKI 500
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 113/287 (39%), Gaps = 74/287 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 325 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 384
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I I K N + AE + + IA++ L+ S
Sbjct: 385 ITI--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 442
Query: 135 VAAGHVAA--------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+G +A T+ L I G +IG GQ+I++L +GA+I I A
Sbjct: 443 PTSGPPSAMTPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-A 501
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
P + P R+V I+G A A I +++E
Sbjct: 502 PAEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE--------------------- 535
Query: 241 QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 536 ENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 582
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 24/165 (14%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIII 99
P+ +++ + +P+ +G +IGK+G I+++ A+IKIA A A + R++II
Sbjct: 456 PQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVII 515
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ +A+ Q +K+++ S E K+ A + + AG +
Sbjct: 516 TGP------PEAQFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRV 561
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR-VVQISG 201
IG G+ + +L+N S A +V+ P + E+D+ VV+I+G
Sbjct: 562 IGKGGKTVNELQNLSSAEVVV------PRDQTPDENDQVVVKITG 600
>gi|115442854|ref|XP_001218234.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
gi|114188103|gb|EAU29803.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
Length = 355
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 65/301 (21%)
Query: 35 EIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
EIE + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 26 EIEVTPKTEEEYAQSMLTLRAIVSSKEAGIIIGKAGKNVADLRDETGVKAGVSKVVPGVH 85
Query: 94 ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLI 149
+RV+ ++ + A +A +L+ A ++ G + +N +RLLI
Sbjct: 86 DRVLTVTGP-----LHGTARAYALVAKGLLEG------APQMGMGGIVSNNGTHPVRLLI 134
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G + A
Sbjct: 135 SHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKA 188
Query: 210 LVEIGNQLRENPPRQVISI--SPA----------------------YN------------ 233
+ EIG L ++ R +I +PA YN
Sbjct: 189 VWEIGKCLIDDWQRGTGTILYNPAVRASVGSGSTNTNMGNGYGSRPYNRTGNGADFSDQS 248
Query: 234 --YSAIRPAQ-----PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
YS+ R P V + T + I +VG +IGR GS I+ IR SGA I
Sbjct: 249 GGYSSRRSNSDAGRFPMVAEDGDEIQTQNISIPADMVGCIIGRAGSKITEIRRSSGARIS 308
Query: 287 V 287
+
Sbjct: 309 I 309
>gi|393247644|gb|EJD55151.1| hypothetical protein AURDEDRAFT_50272, partial [Auricularia
delicata TFB-10046 SS5]
Length = 313
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 116/265 (43%), Gaps = 41/265 (15%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V ++ G +IGK G + IR+ T ++ + ERV+ I+ V
Sbjct: 1 LTLRALVTTKDAGVIIGKAGKNVADIRDHTGVKAGVSKVVPGVHERVLTITGS-----VD 55
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A I +L S+ S A +RLLI+ + G +IG +G I+ ++
Sbjct: 56 GVAKAYTLIITQLLSASTSSPTISSPPPTQTA---LRLLISHNLMGSVIGRNGLKIKAIQ 112
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR--QVIS 227
++SGA +V + + LP ++R+V++ G A+ A+ EIG L E+ R +
Sbjct: 113 DASGARMVA-SKDMLP-----QSTERIVEVQGTAEAIGRAIEEIGKCLLEDWERGQGTVL 166
Query: 228 ISPAYNYSAIR------PAQPFVEPT------------------SADYV-TFEMLISESL 262
P + R PA F P+ SA+ + T + I +
Sbjct: 167 FHPGHGVDDGRSPSRRSPASTFTSPSGMGRSSPVPSSPQSVNSASANNLRTQNISIPSDM 226
Query: 263 VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IGR G+ I+ IR SG+ I +
Sbjct: 227 VGCIIGRQGTKITEIRRLSGSKISI 251
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L+ AG +IG +G+N+ +R+ +G A + + P HE RV+ I+G
Sbjct: 2 TLRALVTTKDAGVIIGKAGKNVADIRDHTGVKAGVSKVVPG-------VHE--RVLTITG 52
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISES 261
V V A I QL SP +A+R +LIS +
Sbjct: 53 SVDGVAKAYTLIITQLLSASTSSPTISSPPPTQTALR-----------------LLISHN 95
Query: 262 LVGGLIGRCGSNISRIRNESGA-MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320
L+G +IGR G I I++ SGA M+ + R ++ G+A+ + A + + + +
Sbjct: 96 LMGSVIGRNGLKIKAIQDASGARMVASKDMLPQSTERIVEVQGTAEAIGRAIEEIGKCLL 155
>gi|324516472|gb|ADY46541.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 360
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 18/174 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK G I+ IR+ + A I I+D ER++ I+ V
Sbjct: 23 LTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDGSC--PERIVTITGN-----VD 75
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A I +D + + V + T+RL++ +Q G LIG G I+++R
Sbjct: 76 TINKAFSMICNKF--QEDMQALPNSVPKPPI---TMRLIVPATQCGSLIGKGGSKIKEIR 130
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA+I + A LP ++R V ISG A++ + I + L E PP+
Sbjct: 131 EATGASIQV-ASEMLP-----SSTERAVTISGSADAIVLCMQHICHILLEAPPK 178
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 33/197 (16%)
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
+ ++ DD ++S +V+ TIRLL+ G + G +IG G +I+ +R+ SGA I I
Sbjct: 4 SCVVLDDAASSSVPQVSV----ILTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINI- 58
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
+ +R+V I+G+V + A I N+ +E+ Q + S P
Sbjct: 59 --------SDGSCPERIVTITGNVDTINKAFSMICNKFQED--MQALPNS--------VP 100
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRH 298
P +T +++ + G LIG+ GS I IR +GA I+V R
Sbjct: 101 KPP---------ITMRLIVPATQCGSLIGKGGSKIKEIREATGASIQVASEMLPSSTERA 151
Query: 299 IQFGGSAQQVALAKQRV 315
+ GSA + L Q +
Sbjct: 152 VTISGSADAIVLCMQHI 168
>gi|452989355|gb|EME89110.1| hypothetical protein MYCFIDRAFT_71441 [Pseudocercospora fijiensis
CIRAD86]
Length = 360
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 121/289 (41%), Gaps = 68/289 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R IV S++ G +IGK G + +R++T ++ + +RV+ ++ ++
Sbjct: 41 LTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVSKVVPGVHDRVLTVT-----GALT 95
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMSGQNI 165
+A +A ++K ++ G V N IRLLI+ +Q G +IG G I
Sbjct: 96 GISDAYGLVADSLVKG------VPQMGMGGVVGNPNTHPIRLLISHNQMGTIIGRQGLKI 149
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++++++SG +V LP ++R+V++ G V A+ EIG L ++ R
Sbjct: 150 KQIQDASGVRMVAQK-EMLP-----QSTERIVEVQGTPEGVQKAVWEIGKCLIDDEQRGY 203
Query: 226 ISI--SPAYNYSAIRPAQP-------FVEPTS-------ADYV----------------- 252
++ SPA PA P + P S AD+
Sbjct: 204 GTVLYSPAVRVQGGAPAPPLNGTGASYGAPRSYNRTGNGADFTGGQSPSSYPPRRNGPSD 263
Query: 253 --------------TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T + I +VG +IGR GS IS IR SGA I +
Sbjct: 264 GGPPPRPEDGEDIQTQNISIPADMVGCIIGRGGSKISEIRKSSGARISI 312
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFR-IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI 89
R +G +G P R +D+ + I +P+ +G +IG+ G +I +IR+ + A I IA
Sbjct: 257 RRNGPSDGGPPPRPEDGEDIQTQNISIPADMVGCIIGRGGSKISEIRKSSGARISIAK-- 314
Query: 90 ARHEE 94
A H+E
Sbjct: 315 APHDE 319
>gi|147903924|ref|NP_001080563.1| heterogeneous nuclear ribonucleoprotein K [Xenopus laevis]
gi|27882469|gb|AAH44711.1| Hnrpk protein [Xenopus laevis]
Length = 399
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 EANGKRPAEDMEEEQAFKRSRNTDLMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S +D E + + +I E + G+
Sbjct: 74 SVPDSSG--PERILSMS--------ADIETIGEILKKII-----PTLEEYQHFKGNDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR + TI + C H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQE-----CC-PHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + + E+P + +P P + DY F M+ +
Sbjct: 173 DRVVECIKVILDLISESPVK-----------GRTQPYDPNFYDETYDYGGFTMMFDD 218
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
V ++ +P G +IGK G RI++IR E+ A+IKI + + ++R+I I+
Sbjct: 321 VTTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITIT 371
>gi|354500004|ref|XP_003512093.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 4
[Cricetulus griseus]
Length = 439
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ + I + + E+P + +P P + DY F M+ +
Sbjct: 179 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 221
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 423
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 424 QYLLQNSVKQYSGKFF 439
>gi|354500002|ref|XP_003512092.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Cricetulus griseus]
Length = 440
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS+ ++ I ILK E + G +R
Sbjct: 80 DSSG--PERILSISAD------------IETIGE-ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ + I + + E+P + +P P + DY F M+ +
Sbjct: 179 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 221
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 423
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 424 QYLLQNSVKQYA 435
>gi|119498177|ref|XP_001265846.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
gi|119414010|gb|EAW23949.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
Length = 360
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 140/345 (40%), Gaps = 74/345 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G++E + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 24 DEGDMEITPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 83
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A ++ G + N +R
Sbjct: 84 GVHDRVLTVTGP-----LQGTARAYALVAKGLLEG------APQMGMGGIVNNNGTHPVR 132
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 133 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 186
Query: 207 LNALVEIGNQLRENPPRQVISI------------SPAYNYSAI------RP--------- 239
A+ EIG L ++ R +I S + N S++ RP
Sbjct: 187 EKAVWEIGKCLIDDWQRGTGTILYNPAVRASVGGSTSMNTSSVGNGYNSRPYNRTGNGAD 246
Query: 240 --------------------AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRN 279
P V + T + I +VG +IGR GS I+ IR
Sbjct: 247 FSDGQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSKITEIRR 306
Query: 280 ESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
SGA I + E R GSAQ A ++ +Y L
Sbjct: 307 SSGARISIAKAPHDETGERMFTIMGSAQ----ANEKALYLLYENL 347
>gi|332236655|ref|XP_003267515.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Nomascus leucogenys]
gi|332832094|ref|XP_001154460.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 8 [Pan
troglodytes]
gi|338719652|ref|XP_003364039.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475607|ref|XP_003809225.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5 [Pan
paniscus]
gi|402897763|ref|XP_003911914.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Papio anubis]
gi|410978219|ref|XP_003995493.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Felis catus]
gi|426362137|ref|XP_004048237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Gorilla gorilla gorilla]
gi|26341878|dbj|BAC34601.1| unnamed protein product [Mus musculus]
gi|26353476|dbj|BAC40368.1| unnamed protein product [Mus musculus]
gi|194374597|dbj|BAG62413.1| unnamed protein product [Homo sapiens]
Length = 439
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + + +I E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ + I + + E+P + +P P + DY F M+ +
Sbjct: 179 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 221
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 423
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 424 QYLLQNSVKQYSGKFF 439
>gi|168277712|dbj|BAG10834.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|184186906|gb|ACC69193.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
Length = 440
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS+ ++ I ILK E + G +R
Sbjct: 80 DSSG--PERILSISAD------------IETIGE-ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ + I + + E+P + +P P + DY F M+ +
Sbjct: 179 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 221
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 423
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 424 QYLLQNSVKQYA 435
>gi|392339927|ref|XP_003753941.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
[Rattus norvegicus]
gi|392347297|ref|XP_003749789.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
[Rattus norvegicus]
gi|149033413|gb|EDL88214.1| insulin-like growth factor 2, binding protein 3 [Rattus norvegicus]
Length = 579
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|390458234|ref|XP_003732080.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
Length = 349
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 25/196 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IREE+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + A+I+ ++D NS + A T+RL++ +Q G LIG G I++
Sbjct: 67 ----AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R S+GA + + A + LP + +++ + I+G +V + +I + E IS
Sbjct: 123 IRKSTGAQVQV-AGDMLP-----NSTEQAITIAGMPQSVTECVKQICLVMLE-----TIS 171
Query: 228 ISPAYNYSAIRPAQPF 243
SP I P QP
Sbjct: 172 QSPQGRVMTI-PYQPM 186
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 122/281 (43%), Gaps = 38/281 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IR+ T A +++A D + E+ I I+ +
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRKSTGAQVQVAGDMLPNSTEQAITIA-----GMP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 153 QSVTECVKQICLVMLET------ISQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRY 201
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
N++G AT + P PL A + + + P L L ++ Q
Sbjct: 202 SNTAGYPHATHDLEGP---PLDAYSIQGQHTIS-----PLHLANLNQVARQ-----QSHF 248
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I P V+ A T E+ I +L+G +IGR G+NI+ IR
Sbjct: 249 AMMHGGTGFAGIDSNSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGTNINEIRQM 308
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
SGA IK+ R + GSA ++LA+ ++ + S
Sbjct: 309 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAKLSS 349
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++++R SGA I I N C +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN----CP-----ERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ I+ S + +A RP VT +++ +
Sbjct: 66 NAIFKAFAMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRKSTGAQVQVAG 135
>gi|402590061|gb|EJW83992.1| hypothetical protein WUBG_05097, partial [Wuchereria bancrofti]
Length = 210
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 60 QIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIA 119
++G +IGK G I+ IR+++ A I I+D ER++ I+ + A I
Sbjct: 1 EVGSIIGKRGDHIKLIRDQSGAKINISDG--SCPERIVTITGS-----IGTINKAFGMIC 53
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
A + D + + + + T+RL++ +Q GC+IG G I+++R ++GA+I +
Sbjct: 54 AKL--QQDLQALPNSIPKPPI---TMRLIVPATQCGCIIGKGGTKIKEIREATGASIQV- 107
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
A LP ++R V ISG ++++ + I L E PP+
Sbjct: 108 ASEMLP-----SSTERAVTISGSADSIVDCMRNICQILLEAPPK 146
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I++IRE T A+I++A + + ER + IS D++V
Sbjct: 72 ITMRLIVPATQCGCIIGKGGTKIKEIREATGASIQVASEMLPSSTERAVTISG-SADSIV 130
Query: 109 SDAENALQ 116
N Q
Sbjct: 131 DCMRNICQ 138
>gi|149018652|gb|EDL77293.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018654|gb|EDL77295.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018655|gb|EDL77296.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018656|gb|EDL77297.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018658|gb|EDL77299.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018659|gb|EDL77300.1| rCG25644, isoform CRA_a [Rattus norvegicus]
Length = 183
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 94/181 (51%), Gaps = 19/181 (10%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G +++IRE++ A I I++ S + ++ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGS 68
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I+++R
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
++GA + + A + LP + ++R V +SG A++ + +I + E P ++ S
Sbjct: 129 ETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILEEPLSRITRAS 182
Query: 230 P 230
P
Sbjct: 183 P 183
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
AV +A+ I +L E+ + +PA S RP VT ++I S
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRPP-----------VTLRLVIPASQC 113
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR +GA ++V G
Sbjct: 114 GSLIGKAGTKIKEIRETTGAQVQVAG 139
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILKD 125
++QI A+IL++
Sbjct: 162 -----CVRQICAVILEE 173
>gi|62088704|dbj|BAD92799.1| heterogeneous nuclear ribonucleoprotein K isoform a variant [Homo
sapiens]
Length = 442
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 22 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 81
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + + +I E + G +R
Sbjct: 82 DSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDCELR 126
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 127 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 180
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ + I + + E+P + +P P + DY F M+ +
Sbjct: 181 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 223
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 366 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 425
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 426 QYLLQNSVKQYA 437
>gi|348528027|ref|XP_003451520.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 429
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V R+++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DTNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ + N ++ + E L+ I L E + +G
Sbjct: 78 SVPDSSG--PERILSV----NASIDTIGEILLKIIPTL---------EEYQHYSGIDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGGKP 176
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + E P + +P P + DY F ML E
Sbjct: 177 ERVVECIKVILELVSEAPIK-----------GRAQPYDPNFYDETYDYGGFTMLFEE 222
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 354 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 413
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 414 QYLLQNSVRQYSGRFF 429
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 33/145 (22%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ ++ +
Sbjct: 46 LRVLLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSVNASID 96
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY-VTFEMLISESLV 263
+ L++I + ++ +YS I D+ +LI +SL
Sbjct: 97 TIGEILLKI-----------IPTLEEYQHYSGI------------DFDCELRLLIHQSLA 133
Query: 264 GGLIGRCGSNISRIRNESGAMIKVY 288
GG+IG G+ I +R + IK++
Sbjct: 134 GGIIGVKGAKIKELRENTQTTIKLF 158
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I PL S DR++ I+G
Sbjct: 355 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS---EDRIITITGTQ 407
Query: 204 PAVLNALVEIGNQLRE 219
+ NA + N +R+
Sbjct: 408 DQIQNAQYLLQNSVRQ 423
>gi|348578485|ref|XP_003475013.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Cavia
porcellus]
Length = 338
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 120/288 (41%), Gaps = 37/288 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCA------- 188
G +RLLI S AG +IG+ G I++LR + N C
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELREIHIGVCECMNCNYSKYCTFRDLMAY 197
Query: 189 -----SAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP----AYNYSAIRP 239
D +V S D ++ ++ +P ++ P Y+YS
Sbjct: 198 DRRGRPGDRYDGMVGFSAD--ETWDSAIDTW-----SPSEWQMAYEPQGGSGYDYSYAGG 250
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ + +T ++ I + L G +IG+ G I +IR+ESGA IK+
Sbjct: 251 RGSYGD-LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 297
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 262 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 321
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 322 QYLLQNSVKQYA 333
>gi|410925644|ref|XP_003976290.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Takifugu rubripes]
Length = 430
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DANGKRPAEDMDEEHAFKRSRNADEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +++ ++ I ++LK + E +G +
Sbjct: 78 SVPDSSG--PERILSVNA------------SIDTIGKILLKIIPTLEEYQHY-SGIDFDS 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGGKP 176
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + E P + +P P + DY F M+ +
Sbjct: 177 ERVIECIKVILELVSETPIK-----------GRTQPYDPNFYDETYDYGGFTMMFED 222
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ ++ +P G +IGK G RI++IR E A+IKI + + E+R+I I+
Sbjct: 355 ITTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKIDEPLEGSEDRIITIT 405
>gi|410925642|ref|XP_003976289.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Takifugu rubripes]
Length = 430
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED + E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DANGKRPAEDMDEEHAFKRSRNADEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +++ ++ I ++LK + E +G +
Sbjct: 78 SVPDSSG--PERILSVNA------------SIDTIGKILLKIIPTLEEYQHY-SGIDFDS 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLVGGKP 176
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + E P + +P P + DY F M+ +
Sbjct: 177 ERVIECIKVILELVSETPIK-----------GRTQPYDPNFYDETYDYGGFTMMFED 222
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ ++ +P G +IGK G RI++IR E A+IKI + + E+R+I I+
Sbjct: 355 ITTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKIDEPLEGSEDRIITIT 405
>gi|119614192|gb|EAW93786.1| insulin-like growth factor 2 mRNA binding protein 3, isoform CRA_a
[Homo sapiens]
Length = 422
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 33 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 92
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 93 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 138
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 139 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 194
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 195 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 254
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 255 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 284
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 110 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 169
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 170 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 227
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 228 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 286
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 287 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 320
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 321 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 366
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 253 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 306
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 307 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 358
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 359 LSSAEVVV------PRDQTPDENDQVVVKITG 384
>gi|358368755|dbj|GAA85371.1| KH domain RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 360
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 138/346 (39%), Gaps = 75/346 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
+D +IE + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 24 DDVDIETTPKTEEEYAQSMLTLRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVSKVVP 83
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ N A +A +L+ A ++ G + +N +R
Sbjct: 84 GVHDRVLTVTGPLNGTA-----RAYALVAKGLLEG------APQMGMGGIVSNNGTHPVR 132
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 133 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 186
Query: 207 LNALVEIGNQLRE-----------NPP-RQVISISPAY--------NYSAIRP------- 239
A+ EIG L + NP R + +P+ N RP
Sbjct: 187 EKAVWEIGKCLIDDWQRGTGTILYNPAVRASVGTTPSTSTMNQSVGNGYNSRPYNRTGNG 246
Query: 240 ---------------------AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
P V + T + I +VG +IGR GS I+ IR
Sbjct: 247 ADFSDQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSKITEIR 306
Query: 279 NESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
SGA I + E R GSAQ A ++ +Y L
Sbjct: 307 RSSGARISIAKAPHDETGERMFTIMGSAQ----ANEKALYLLYENL 348
>gi|426199945|gb|EKV49869.1| hypothetical protein AGABI2DRAFT_63586 [Agaricus bisporus var.
bisporus H97]
Length = 365
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 120/262 (45%), Gaps = 44/262 (16%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
++ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ NV
Sbjct: 63 NIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERIL--------NVS 114
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+ + ++ + +D + V A TI+ +I S+ G +IG G I+++
Sbjct: 115 GPLDAVSKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFMIPNSRMGSVIGKGGSKIKEI 172
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
+++SGA + + LP ++RV+ ++G A+ A IG L E R
Sbjct: 173 QDASGAKLN-ASEGMLP-----GSTERVLSVAGVADAIHIATYYIGTILIEAQERM---- 222
Query: 229 SPAYNYSAIRPAQPFVEPT---SADYV--------------------TFEMLISESLVGG 265
P+ + S RP+ PT + YV T ++ I LVG
Sbjct: 223 -PSTSNSTYRPSSQPRRPTQGGGSSYVPGYSHHAPYGPPHNPPQQLQTQQIYIPNDLVGC 281
Query: 266 LIGRCGSNISRIRNESGAMIKV 287
+IG+ GS I+ IR+ S + IK+
Sbjct: 282 IIGKGGSKINEIRHMSASQIKI 303
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 124 KDDDSNSEASKVAAGHVAANTI--RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
K S EAS A+ + I R LI A +IG G ++ ++R SGA +++
Sbjct: 43 KAGSSYGEASTTASAVPPSANIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVS-- 100
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+P +R++ +SG + AV A I ++ + +
Sbjct: 101 ESIP-----GNPERILNVSGPLDAVSKAFGLIVRRIND---------------------E 134
Query: 242 PFVEPT--SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMI 285
PF P+ + VT + +I S +G +IG+ GS I I++ SGA +
Sbjct: 135 PFDVPSVPGSRAVTIKFMIPNSRMGSVIGKGGSKIKEIQDASGAKL 180
>gi|409082121|gb|EKM82479.1| hypothetical protein AGABI1DRAFT_33710 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 365
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 120/262 (45%), Gaps = 44/262 (16%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
++ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ NV
Sbjct: 63 NIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERIL--------NVS 114
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+ + ++ + +D + V A TI+ +I S+ G +IG G I+++
Sbjct: 115 GPLDAVSKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFMIPNSRMGSVIGKGGSKIKEI 172
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
+++SGA + + LP ++RV+ ++G A+ A IG L E R
Sbjct: 173 QDASGAKLN-ASEGMLP-----GSTERVLSVAGVADAIHIATYYIGTILIEAQERM---- 222
Query: 229 SPAYNYSAIRPAQPFVEPT---SADYV--------------------TFEMLISESLVGG 265
P+ + S RP+ PT + YV T ++ I LVG
Sbjct: 223 -PSTSNSTYRPSSQPRRPTQGGGSSYVPGYSHHAPYGPPHNPPQQLQTQQIYIPNDLVGC 281
Query: 266 LIGRCGSNISRIRNESGAMIKV 287
+IG+ GS I+ IR+ S + IK+
Sbjct: 282 IIGKGGSKINEIRHMSASQIKI 303
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 124 KDDDSNSEASKVA-AGHVAANT-IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
K S EAS A A +AN +R LI A +IG G ++ ++R SGA +++
Sbjct: 43 KAGSSYGEASTTAPAVPPSANIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVS-- 100
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+P +R++ +SG + AV A I ++ + +
Sbjct: 101 ESIP-----GNPERILNVSGPLDAVSKAFGLIVRRIND---------------------E 134
Query: 242 PFVEPT--SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMI 285
PF P+ + VT + +I S +G +IG+ GS I I++ SGA +
Sbjct: 135 PFDVPSVPGSRAVTIKFMIPNSRMGSVIGKGGSKIKEIQDASGAKL 180
>gi|313151207|ref|NP_998159.2| heterogeneous nuclear ribonucleoprotein K [Danio rerio]
Length = 429
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+GKR +D E E P +R++ D V RI++ S+ G VIGK G I+ +R + AT+
Sbjct: 19 NGKRSADDSEEE--KPYKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATV 76
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ ++ + AE L+ I L E + G
Sbjct: 77 SVPDSSG--PERILSVSA----DIPTVAEILLKIIPTL---------EEYQHHKGVDFDC 121
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR+S+ TI + C + +DRVV + G
Sbjct: 122 ELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQ----ECCPQS--TDRVVLVGGKA 175
Query: 204 PAVLNAL 210
V+ +
Sbjct: 176 ERVVQCI 182
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 354 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITG--TQDQIQ 411
Query: 110 DAENALQQIAALIL 123
+A+ LQ A +L
Sbjct: 412 NAQYLLQNSALHLL 425
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 125 DDDSNSEASKVAAGHVAAN-----TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
D +S+ ++S + G + + T ++ I AG +IG GQ I+++R+ SGA+I I
Sbjct: 331 DSNSSWDSSYQSGGRSSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKID 390
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
P Q DR++ I+G + NA + N
Sbjct: 391 EPLQ-------GSEDRIITITGTQDQIQNAQYLLQN 419
>gi|324519086|gb|ADY47282.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 342
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 18/174 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK G I+ IR+ + A I I+D ER++ I+ V
Sbjct: 23 LTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDGSC--PERIVTITGN-----VD 75
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A I +D + + V + T+RL++ +Q G LIG G I+++R
Sbjct: 76 TINKAFSMICNKF--QEDMQALPNSVPKPPI---TMRLIVPATQCGSLIGKGGSKIKEIR 130
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
++GA+I + A LP ++R V ISG A++ + I + L E PP+
Sbjct: 131 EATGASIQV-ASEMLP-----SSTERAVTISGSADAIVLCMQHICHILLEAPPK 178
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
+ ++ DD ++S +V+ TIRLL+ G + G +IG G +I+ +R+ SGA I I
Sbjct: 4 SCVVLDDAASSSVPQVSV----ILTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINI- 58
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
+ +R+V I+G+V + A I N+ +E+ A S +P
Sbjct: 59 --------SDGSCPERIVTITGNVDTINKAFSMICNKFQED--------MQALPNSVPKP 102
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRH 298
+T +++ + G LIG+ GS I IR +GA I+V R
Sbjct: 103 P-----------ITMRLIVPATQCGSLIGKGGSKIKEIREATGASIQVASEMLPSSTERA 151
Query: 299 IQFGGSAQQVALAKQRV 315
+ GSA + L Q +
Sbjct: 152 VTISGSADAIVLCMQHI 168
>gi|410081491|ref|XP_003958325.1| hypothetical protein KAFR_0G01560 [Kazachstania africana CBS 2517]
gi|372464913|emb|CCF59190.1| hypothetical protein KAFR_0G01560 [Kazachstania africana CBS 2517]
Length = 360
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 130/314 (41%), Gaps = 69/314 (21%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+K +L+R+++ + GKVIG E ++ +R+ I +++ + +RV+ I
Sbjct: 43 SKNSPILYRVLLSYNESGKVIGHEAKTLKTLRDTNDIQITLSEKVQGCSDRVLSIGGS-- 100
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHV------------------------ 140
+ + N + I L ++D + A+ H
Sbjct: 101 ---IVNVANTINDIIKLFVED------TEQTASKHYPFSFLNSMLPEPKIEDFEGCTDVN 151
Query: 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
A ++RLL++ S+ + G +G ++KL+ I I + LP DR+++I
Sbjct: 152 AIRSVRLLLSNSKIPLVFGKNGDTLKKLQEGYKVKI-IGSKRTLP-----DSDDRLLEIQ 205
Query: 201 GDVPAVLNALVEIG---------NQLRENPPRQVISISPAYNYSAIRPAQPFVEPTS--- 248
G+ + + +VE+G QL E I +P + S +QP +
Sbjct: 206 GESQHIADCIVEVGQIILNKISFEQLNE------IRYTPHLSKSKTNGSQPIRNQKTEQD 259
Query: 249 ADYVTFE--MLISESLVGGLIGRCGSNISRIRNESGAMI--------KVYGGKGEQKHRH 298
+D TF +L+ E LVGGLIG G+ I +R + I K + +GE+ +
Sbjct: 260 SDLQTFSATVLVPEPLVGGLIGVKGNRIISLRKYTKTKITTLKNEDEKTHNDEGEEMRKF 319
Query: 299 IQFGGSAQQVALAK 312
+ G S V A+
Sbjct: 320 VITGHSVDNVKKAE 333
>gi|196049606|pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 94/171 (54%), Gaps = 21/171 (12%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
K + R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++ N
Sbjct: 1 KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN- 57
Query: 106 NVVSDAENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
A+ + A+I L++D S+S + AA T+RL++ SQ G LIG G
Sbjct: 58 --------AIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGG 108
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
I+++R S+GA + + A + LP + ++R + I+G +++ + +I
Sbjct: 109 CKIKEIRESTGAQVQV-AGDMLP-----NSTERAITIAGIPQSIIECVKQI 153
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 6 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 56
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 57 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 100
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 101 GSLIGKGGCKIKEIRESTGAQVQVAG 126
>gi|68473490|ref|XP_719303.1| hypothetical protein CaO19.13072 [Candida albicans SC5314]
gi|46441115|gb|EAL00415.1| hypothetical protein CaO19.13072 [Candida albicans SC5314]
Length = 369
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 122/304 (40%), Gaps = 65/304 (21%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR ET I+ I ER++ +S K + D
Sbjct: 73 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGK-----LDDC 127
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIE 166
AL A ++ + + + NT +RLLI SQ G LIG G I+
Sbjct: 128 AKALSYFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPNSQMGTLIGSKGARIQ 187
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+L+N+ ++ I + + LP ++R+V++ G V + ++L ++I
Sbjct: 188 QLQNNFNISM-IASKSFLP-----GSNERLVELQGTVDDLYDSL-------------RII 228
Query: 227 SISPAYNYSAIRPAQPFVEPTSADY----------------------------------- 251
S ++S+I +V P Y
Sbjct: 229 SRCLIEDFSSIVGTTYYV-PRGNTYNNNHSHSHSHNNTNNTNINNNNNNNNNTHGSGGNK 287
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
T + +VG LIG+ GS I +R SGAMI + + R GS+ V A
Sbjct: 288 TTDTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTITGSSHAVDKA 347
Query: 312 KQRV 315
KQ +
Sbjct: 348 KQMI 351
>gi|68473725|ref|XP_719187.1| hypothetical protein CaO19.5627 [Candida albicans SC5314]
gi|46440993|gb|EAL00294.1| hypothetical protein CaO19.5627 [Candida albicans SC5314]
Length = 368
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 122/304 (40%), Gaps = 65/304 (21%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR ET I+ I ER++ +S K + D
Sbjct: 72 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGK-----LDDC 126
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIE 166
AL A ++ + + + NT +RLLI SQ G LIG G I+
Sbjct: 127 AKALSYFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPNSQMGTLIGSKGARIQ 186
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+L+N+ ++ I + + LP ++R+V++ G V + ++L ++I
Sbjct: 187 QLQNNFNISM-IASKSFLP-----GSNERLVELQGTVDDLYDSL-------------RII 227
Query: 227 SISPAYNYSAIRPAQPFVEPTSADY----------------------------------- 251
S ++S+I +V P Y
Sbjct: 228 SRCLIEDFSSIVGTTYYV-PRGNTYNNNHSHSHSHNNTNNTNINNNNNNNNNTHGSGGNK 286
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
T + +VG LIG+ GS I +R SGAMI + + R GS+ V A
Sbjct: 287 TTDTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTITGSSHAVDKA 346
Query: 312 KQRV 315
KQ +
Sbjct: 347 KQMI 350
>gi|395322965|gb|EJF55518.1| hypothetical protein DICSQDRAFT_175811 [Dichomitus squalens
LYAD-421 SS1]
Length = 280
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 118/239 (49%), Gaps = 16/239 (6%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
++ R +V + ++GK + +++EET T +++AI E+V+ + V
Sbjct: 12 IVIRALVGKKHAQVILGKNSVNLMRLQEETGVTASLSEAIPGVGEQVLRVLGS-----VE 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A A IA+ +++ S + V + +RLLI + G +IG G+ I+ +
Sbjct: 67 SATEAYFLIASDLIRTHPLRS--TSVESDSAPTTCLRLLIPHNMLGSIIGRHGRKIKAMH 124
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
SSGA I + LP + ++ ++Q+ G ++ A+ +I E+ ++ + +
Sbjct: 125 ASSGAQIST-REHMLP-----NSTEHIMQLCGTSESIRRAVRDICLCFLEDD--ELCAGT 176
Query: 230 PAYNYSAI-RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
++ +A +P+ P +PT T E+ + +VG +IGR G+NI+ ++ SGA I +
Sbjct: 177 VLFHPAAPDQPSSPVTQPTGTRPFTREIDVPSDMVGSIIGRGGTNINEMKRMSGAEIVI 235
>gi|320580877|gb|EFW95099.1| RNA binding protein [Ogataea parapolymorpha DL-1]
Length = 689
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 128/316 (40%), Gaps = 65/316 (20%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ +R++V R+ G +IGK G I +IRE+T ++ I +R++ ++ +V
Sbjct: 386 ITYRMLVSRREAGAIIGKNGDNITRIREQTNVKAGVSKVIEGCIDRILTVTG-----IVD 440
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAG---------------------------HVAA 142
+ AL Q A + D + + AS A G +
Sbjct: 441 NVPRALVQFAKAV-TDSNVQTVASASANGTDPTSLITYNFFPLKPLCPTPAASDPFYAET 499
Query: 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
++RLLI SQ G LIG G I+ ++ + +V + + L + ++R+V++ G
Sbjct: 500 LSLRLLIPHSQMGTLIGKGGSRIKSIQETYNIKMVA-SKDYL-----RNSTERIVEVQGA 553
Query: 203 VPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQP------FVEP---TSADY-V 252
++ AL I L + V +I Y P QP ++P T +D +
Sbjct: 554 KTNLVEALNTISRCLLSDYHGVVATI-----YYTPSPRQPPYKGGSKLDPQQGTGSDKEI 608
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA- 311
+ + VG LIG+ GS I IR SG I + EQ R G+ V A
Sbjct: 609 SEKTSFPGEFVGALIGKKGSRIQEIRRTSGCTINIDAEDNEQGQREFTLTGTTLSVDRAL 668
Query: 312 ----------KQRVDE 317
KQR DE
Sbjct: 669 SSLYSCFEKEKQRRDE 684
>gi|363744460|ref|XP_003643054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Gallus gallus]
Length = 426
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 32/234 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + + +I E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGGKP 172
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEML 257
V+ + I + + E+P + +P P + DY F M
Sbjct: 173 DRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMF 215
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 351 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 408
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 409 NAQYLLQ 415
>gi|389751124|gb|EIM92197.1| hypothetical protein STEHIDRAFT_89021 [Stereum hirsutum FP-91666
SS1]
Length = 339
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 128/278 (46%), Gaps = 52/278 (18%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
QDVL R +V ++ G +IGK G + +R++T ++ I ERV+
Sbjct: 25 GQDVLTLRALVSTKDAGVIIGKAGKNVADLRDQTGVKAGVSKVIPGVHERVL-------- 76
Query: 106 NVVSDAENALQQIAALILKDD-DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
V+ A +++ + ALI+ ++N + V++ + +IRLLI+ + G +IG +G
Sbjct: 77 -TVTGAVDSVAKAYALIIAQLVEANPASPSVSSSSGSHTSIRLLISHNLMGTIIGRNGLK 135
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I+ +++ SGA +V + + LP ++RVV + G ++ A+ EIG L E+ R
Sbjct: 136 IKAIQDGSGARMV-ASKDMLP-----QSTERVVDVQGSPESIGRAIEEIGRCLLEDWERG 189
Query: 225 VISI-------------------SPAYNYS----------------AIRPAQPFVEPTSA 249
+ ++ A+NYS A P P +A
Sbjct: 190 LGTVLYHPGVADERSGGSMGGAGRRAHNYSGSYSGRRSNAGEMSTRATSPPSPESPSQAA 249
Query: 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ T + I +VG +IGR G+ I+ IR SG+ I +
Sbjct: 250 NLRTQNISIPSDMVGCIIGRGGTKITEIRRLSGSKISI 287
>gi|326935642|ref|XP_003213877.1| PREDICTED: poly(rC)-binding protein 2-like, partial [Meleagris
gallopavo]
Length = 168
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 92/168 (54%), Gaps = 22/168 (13%)
Query: 61 IGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAA 120
+G +IGK G ++K+REE+ A I I++ ER+I ++ N A+ + A
Sbjct: 1 VGSIIGK-GKSVKKMREESGARINISEG--NCPERIITLAGPTN---------AIFKAFA 48
Query: 121 LI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIV 177
+I L++D S+S + AA T+RL++ SQ G LIG G I+++R S+GA +
Sbjct: 49 MIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQ 107
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+ A + LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 108 V-AGDMLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 149
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 27/155 (17%)
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G +IG G++++K+R SGA I I + + +R++ ++G A+ A I
Sbjct: 2 GSIIG-KGKSVKKMREESGARINI---------SEGNCPERIITLAGPTNAIFKAFAMII 51
Query: 215 NQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
++L E+ IS S + +A RP VT +++ S G LIG+ G I
Sbjct: 52 DKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQCGSLIGKGGCKI 95
Query: 275 SRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQV 308
IR +GA ++V G R I G Q +
Sbjct: 96 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 130
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 73 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 124
>gi|392347947|ref|XP_003749978.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V I++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELHILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
ML +
Sbjct: 241 MLFDD 245
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+ +L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LHILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+ +I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDWIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|145238284|ref|XP_001391789.1| RNA-binding protein rnc1 [Aspergillus niger CBS 513.88]
gi|134076273|emb|CAL00757.1| unnamed protein product [Aspergillus niger]
gi|350635790|gb|EHA24151.1| hypothetical protein ASPNIDRAFT_209528 [Aspergillus niger ATCC
1015]
Length = 360
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 138/346 (39%), Gaps = 75/346 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
+D +IE + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 24 DDVDIETTPKTEEEYAQSMLTLRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVSKVVP 83
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ N A +A +L+ A ++ G + +N +R
Sbjct: 84 GVHDRVLTVTGPLNGTA-----RAYALVAKGLLEG------APQMGMGGIVSNNGTHPVR 132
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 133 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 186
Query: 207 LNALVEIGNQLRENPPRQVISI--SPAYNYSA------------------IRP------- 239
A+ EIG L ++ R +I +PA S RP
Sbjct: 187 EKAVWEIGKCLIDDWQRGTGTILYNPAVRASVGTTTSTSTMNQSVGNGYNSRPYNRTGNG 246
Query: 240 ---------------------AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
P V + T + I +VG +IGR GS I+ IR
Sbjct: 247 ADFSDQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSKITEIR 306
Query: 279 NESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
SGA I + E R GSAQ A ++ +Y L
Sbjct: 307 RSSGARISIAKAPHDETGERMFTIMGSAQ----ANEKALYLLYENL 348
>gi|403286483|ref|XP_003934516.1| PREDICTED: poly(rC)-binding protein 1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286485|ref|XP_003934517.1| PREDICTED: poly(rC)-binding protein 1-like isoform 2 [Saimiri
boliviensis boliviensis]
Length = 376
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A ++++ D + E+ I ++ V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVSGDMLPNSTEQAITVAV-----VP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+QQI ++L+ + G V + + A S C G ++
Sbjct: 153 QSVTECVQQICLVMLET------LPQCPQGRVMPIPYQPMPASSPVTCAGGQ-----DRG 201
Query: 169 RNSSG---ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+++G AT + P PL A + + + P L L ++ Q +
Sbjct: 202 SDAAGYPHATRDLGVP---PLDACSTQGQHTIS-----PLHLAKLNQVARQQS-----HI 248
Query: 226 ISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ ++ I + P V+ A T E+ I +L+G +IGR G NI+ IR
Sbjct: 249 AMLHGGTGFAGIESSSPEVKGYRASLDASTQTTHELTIPNNLIGCIIGRQGVNINEIRQM 308
Query: 281 SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
SGA IK+ R + GSA ++LA+ ++ ++S+
Sbjct: 309 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLFSE 350
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG + ++++++R SGA I + + +R++ ++G
Sbjct: 15 TIRLLMHGKEVGSIIGKNEESVKRIREESGARFSI---------SEGNCPERIITLTGPT 65
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A + N+L E+ I+ S + +A RP VT +++ +
Sbjct: 66 CAIFKAFAMMINKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPATQC 109
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 110 GSLIGKGGCKIKEIRESTGAQVQVSG 135
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK +++IREE+ A I++ ER+I ++
Sbjct: 14 LTIRLLMHGKEVGSIIGKNEESVKRIREESGARFSISEG--NCPERIITLTGPTCA---- 67
Query: 110 DAENALQQIAALILK-DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+ A +I K ++D NS + A T+RL++ +Q G LIG G I+++
Sbjct: 68 ----IFKAFAMMINKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 123
Query: 169 RNSSGATIVI---LAPN 182
R S+GA + + + PN
Sbjct: 124 RESTGAQVQVSGDMLPN 140
>gi|395830897|ref|XP_003788549.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Otolemur garnettii]
Length = 579
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|348517286|ref|XP_003446165.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 435
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED + + S + R + V RI++ S+ G VIGK G I+ +R + KA++
Sbjct: 17 ETNGKRPAEDADEQKSFKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYKASV 76
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS+ ++ + E L+ I L E + G
Sbjct: 77 SVPDSSG--PERILSISA----DIETVGEILLKIIPTL---------EEYQQYNGMDFDC 121
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ +I + C + +DRVV + G
Sbjct: 122 ELRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQ----ECCPQS--TDRVVLVGGKT 175
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + + + E P + +P P + +Y F M+ E
Sbjct: 176 ERVVECIKTMLELISEAPIK-----------GRTQPYDPNFYDETYEYGGFTMMFEE 221
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I IS + N
Sbjct: 360 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQIQNA 419
Query: 108 VSDAENALQQIAALIL 123
+N+++Q + +L
Sbjct: 420 QYLLQNSVKQYSGHLL 435
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 126 DDSNSEASKVAAGHVAAN-------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
D+S+S S + G + N T ++ I AG +IG GQ I+++R+ SGA+I I
Sbjct: 336 DNSSSWDSYQSGGRGSYNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 395
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
PL S DR++ ISG + NA + N +++
Sbjct: 396 ----DEPLEGS---EDRIITISGTQDQIQNAQYLLQNSVKQ 429
>gi|126314788|ref|XP_001377551.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2,
partial [Monodelphis domestica]
Length = 504
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 26/202 (12%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+AK D RI+VP++ +G +IGKEG I+ + ++T++ + I + E+ V I +S
Sbjct: 89 QAKPPDFPLRILVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGASEKPVTIHAS 148
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A ++I ++ K+ D +V +++L S G LIG
Sbjct: 149 PEGSS------EACRRILEIMQKEADETKAVEEVP--------LKILAHNSLVGRLIGKE 194
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I L + + +R + + G + A +A VEI +LRE
Sbjct: 195 GRNLKKIEQDTGTKITISPLQDL----TIYNPERTITVKGTIEACSSAEVEIMRKLREAY 250
Query: 222 PRQVISIS------PAYNYSAI 237
+++++ P N SA+
Sbjct: 251 ENDMLTVNQQGSLIPGLNLSAL 272
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDN 106
Q+V++ + +P++ +G +IGK+GH I+++ +A+IKIA A ER++II+
Sbjct: 327 QEVVY-LFIPTQAVGAIIGKKGHHIKQLARFARASIKIAPAEGPDVGERMVIITGPPEAQ 385
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A +I + +++ N + H+ + S AG +IG G+ +
Sbjct: 386 F-----KAQGRIFGKLKEENFFNPKEEVKLKAHIR-------VPSSAAGRVIGKGGKTVN 433
Query: 167 KLRNSSGATIVI 178
+L+N + A +++
Sbjct: 434 ELQNLTSAEVIV 445
>gi|2105469|gb|AAC35208.1| putative RNA binding protein KOC [Homo sapiens]
gi|4098297|gb|AAD09223.1| Koc1 [Homo sapiens]
Length = 579
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHQF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 112/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHQFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 24/151 (15%)
Query: 55 IVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAEN 113
+P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 411 FIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQF 464
Query: 114 ALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 465 KAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQNL 516
Query: 172 SGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 517 SSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|395738667|ref|XP_003780758.1| PREDICTED: LOW QUALITY PROTEIN: insulin-like growth factor 2
mRNA-binding protein 3 [Pongo abelii]
Length = 567
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 178 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 237
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 238 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 283
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 284 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 339
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 340 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 399
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 400 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 429
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 255 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 314
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 315 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 372
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 373 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 431
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 432 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 465
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 466 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 511
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 398 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 451
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 452 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 503
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 504 LSSAEVVV------PRDQTPDENDQVVVKITG 529
>gi|355560757|gb|EHH17443.1| hypothetical protein EGK_13854 [Macaca mulatta]
gi|355747773|gb|EHH52270.1| hypothetical protein EGM_12689 [Macaca fascicularis]
Length = 583
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
>gi|301771918|ref|XP_002921377.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
isoform 1 [Ailuropoda melanoleuca]
Length = 579
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|109067156|ref|XP_001098422.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
isoform 3 [Macaca mulatta]
gi|402863939|ref|XP_003896249.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Papio anubis]
Length = 579
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|255943089|ref|XP_002562313.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587046|emb|CAP94706.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 140/366 (38%), Gaps = 76/366 (20%)
Query: 13 VSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKA-QDVLFRIIVPSRQIGKVIGKEGHR 71
+ V EP D + G++E A D+ R IV S++ G +IGK G
Sbjct: 9 TTAVDHDEPMTDNFNDNLADQGDLEAPLKTEEEYAIADLTLRAIVSSKEAGVIIGKAGKN 68
Query: 72 IQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
+ +R+ET ++ + +RV+ ++ + + A +A +L+
Sbjct: 69 VADLRDETGVKAGVSKVVPGVHDRVLTVTGQ-----LRSLARAYAIVAKGLLEG------ 117
Query: 132 ASKVAAGHVAANT----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187
A ++ G + +N +RLLI+ +Q G +IG G I+ ++++SG +V LP
Sbjct: 118 APQMGMGGIVSNNGTHPVRLLISHNQMGTIIGRQGLKIKHIQDASGVRMVA-QKEMLP-- 174
Query: 188 ASAHESDRVVQISGDVPAVLNALVEIGN---------------------------QLREN 220
++R+V++ G + A+ EIG L N
Sbjct: 175 ---QSTERIVEVQGTPEGIEKAIWEIGKCLLDDWQRGTGTVLYNPAVRASLSGSQPLNNN 231
Query: 221 PP-----------RQVISISPAYNYS-----------AIRPAQPFVEPTSADYVTFEMLI 258
PP RQ ++S A P V + T + I
Sbjct: 232 PPAGNGYQNNTSSRQYNRTGNGADFSDGGYNRRSNSDAGNRGYPLVTEDGEEIQTQNISI 291
Query: 259 SESLVGGLIGRCGSNISRIRNESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDE 317
+VG +IGR G+ I+ IR SGA I + E R GSAQ A ++
Sbjct: 292 PADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQ----ANEKALY 347
Query: 318 YIYSQL 323
+Y L
Sbjct: 348 LLYENL 353
>gi|410952454|ref|XP_003982895.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 1 [Felis catus]
Length = 579
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|30795212|ref|NP_006538.2| insulin-like growth factor 2 mRNA-binding protein 3 [Homo sapiens]
gi|114612360|ref|XP_001157593.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
isoform 4 [Pan troglodytes]
gi|397472938|ref|XP_003807987.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3 [Pan
paniscus]
gi|254763311|sp|O00425.2|IF2B3_HUMAN RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 3;
Short=IGF2 mRNA-binding protein 3; Short=IMP-3; AltName:
Full=IGF-II mRNA-binding protein 3; AltName: Full=KH
domain-containing protein overexpressed in cancer;
Short=hKOC; AltName: Full=VICKZ family member 3
gi|4191612|gb|AAD09828.1| IGF-II mRNA-binding protein 3 [Homo sapiens]
gi|40807047|gb|AAH65269.1| Insulin-like growth factor 2 mRNA binding protein 3 [Homo sapiens]
gi|51095013|gb|EAL24257.1| IGF-II mRNA-binding protein 3 [Homo sapiens]
gi|119614193|gb|EAW93787.1| insulin-like growth factor 2 mRNA binding protein 3, isoform CRA_b
[Homo sapiens]
gi|261861412|dbj|BAI47228.1| insulin-like growth factor 2 mRNA binding protein 3 [synthetic
construct]
gi|410216456|gb|JAA05447.1| insulin-like growth factor 2 mRNA binding protein 3 [Pan
troglodytes]
gi|410260770|gb|JAA18351.1| insulin-like growth factor 2 mRNA binding protein 3 [Pan
troglodytes]
gi|410287810|gb|JAA22505.1| insulin-like growth factor 2 mRNA binding protein 3 [Pan
troglodytes]
gi|410334615|gb|JAA36254.1| insulin-like growth factor 2 mRNA binding protein 3 [Pan
troglodytes]
Length = 579
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|378726019|gb|EHY52478.1| hypothetical protein HMPREF1120_00690 [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 126/310 (40%), Gaps = 74/310 (23%)
Query: 34 GEIEGSDPKRR---AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
GE E PK A++Q + R IV +++ G +IGK G + +REET ++ +
Sbjct: 28 GERENEQPKTEEDYAQSQ-LTLRAIVSTKEAGVIIGKAGKNVADLREETGVKAGVSKVVQ 86
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ +S A +A +L+ A +V G V N IR
Sbjct: 87 GVHDRVLTVTGP-----LSGIAKAYSLVAKGLLEG------APQVGMGGVVQNNGTHPIR 135
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ +++ SG +V LP ++R+V++ G +
Sbjct: 136 LLISHNQMGTIIGRQGLKIKHIQDVSGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 189
Query: 207 LNALVEIGNQLRENPPRQVISI--SPA------------------------------YNY 234
A+ EIG L ++ R ++ +PA YN
Sbjct: 190 DKAVWEIGKCLVDDWQRGTGTVLYNPAVRVQVGSGPLPPAVGGGLPAGNNYIGGGRSYNR 249
Query: 235 SA-----------------IRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRI 277
+ R P V + T + I +VG +IGR GS IS I
Sbjct: 250 TGNGADFSESRGYTRGNDLPRGGIPMVTEDGEEVQTQNISIPADMVGCIIGRGGSKISEI 309
Query: 278 RNESGAMIKV 287
R SGA I +
Sbjct: 310 RKTSGARISI 319
>gi|73976012|ref|XP_539474.2| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
isoform 1 [Canis lupus familiaris]
Length = 579
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|403287927|ref|XP_003935171.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Saimiri boliviensis boliviensis]
Length = 579
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 111/284 (39%), Gaps = 69/284 (24%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA------------- 86
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 87 -------DAIARHEERVI--IISSKDNDNVVSDAE---------NALQQIAALILKDDDS 128
+ A+ EE ++ I S +ND + + NAL +
Sbjct: 327 ITVKGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPT 386
Query: 129 NSEASKVAAGH-----VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
+ S + + T+ L I G +IG GQ+I++L +GA+I I AP +
Sbjct: 387 SGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-APAE 445
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPF 243
P R+V I+G A A I +++E + F
Sbjct: 446 AP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------ENF 479
Query: 244 VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V P + + + G +IG+ G ++ ++N S A + V
Sbjct: 480 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|32451938|gb|AAH54653.1| Heterogeneous nuclear ribonucleoprotein K [Danio rerio]
gi|182890942|gb|AAI65841.1| Hnrnpk protein [Danio rerio]
Length = 420
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQD--VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+GKR +D E E P +R++ D V RI++ S+ G VIGK G I+ +R + AT+
Sbjct: 19 NGKRSADDSEEE--KPYKRSRNSDEMVELRILLQSKNAGAVIGKGGKDIKALRTDYNATV 76
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ ++ + AE L+ I L E + G
Sbjct: 77 SVPDSSG--PERILSVSA----DIPTVAEILLKIIPTL---------EEYQHHKGVDFDC 121
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR+S+ TI + C + +DRVV + G
Sbjct: 122 ELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQ----ECCPQS--TDRVVLVGGKA 175
Query: 204 PAVLNAL 210
V+ +
Sbjct: 176 ERVVQCI 182
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ +
Sbjct: 342 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQD----- 396
Query: 110 DAENALQQ---IAALIL 123
+NAL Q + +LIL
Sbjct: 397 QIQNALYQPPTVCSLIL 413
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T ++ I AG +IG GQ I+++R+ SGA+I I P Q DR++ I+G
Sbjct: 343 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQ-------GSEDRIITITGTQ 395
Query: 204 PAVLNALVE 212
+ NAL +
Sbjct: 396 DQIQNALYQ 404
>gi|296209450|ref|XP_002751548.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Callithrix jacchus]
Length = 579
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|281353861|gb|EFB29445.1| hypothetical protein PANDA_010268 [Ailuropoda melanoleuca]
Length = 596
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 123/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 411
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
>gi|395334662|gb|EJF67038.1| cytoplasmic protein [Dichomitus squalens LYAD-421 SS1]
Length = 327
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 116/264 (43%), Gaps = 37/264 (14%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
A D L R +V ++ G +IGK G + ++RE+T ++ I ERV+
Sbjct: 25 ADDSLTLRALVSTKDAGVIIGKAGKNVAELREQTGVKAGVSKVIPGVHERVL-------- 76
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
V E + + ++ + +N + + IRLLI+ + G +IG +G I
Sbjct: 77 TVTGSVEGVAKAYSLIVSQLVSANPSSPVTSNSSSPTTAIRLLISHNLMGSVIGRNGLKI 136
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
+ +++SSGA +V + + LP ++R+V++ G ++ A+ EIG L E+ R V
Sbjct: 137 KAIQDSSGARMV-ASKDMLP-----QSTERIVEVQGSSESIGRAIEEIGRCLLEDWERGV 190
Query: 226 --ISISPAY-NYSAIRPAQPFVEPTSAD-------------------YVTFEMLISESLV 263
+ P + + R P + D T + I +V
Sbjct: 191 GTVLFHPGTGDERSGRRTHPTGRRANGDGRGRTSPSPNSPSSPQGTNLRTQNISIPSDMV 250
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G +IGR G+ I+ IR SG+ I +
Sbjct: 251 GCIIGRNGTKITEIRRLSGSKISI 274
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 29/189 (15%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L++ AG +IG +G+N+ +LR +G A + + P HE RV+ ++G
Sbjct: 30 TLRALVSTKDAGVIIGKAGKNVAELREQTGVKAGVSKVIPG-------VHE--RVLTVTG 80
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISES 261
V V A I +QL P ++ + + +AIR +LIS +
Sbjct: 81 SVEGVAKAYSLIVSQLVSANPSSPVTSNSSSPTTAIR-----------------LLISHN 123
Query: 262 LVGGLIGRCGSNISRIRNESGA-MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320
L+G +IGR G I I++ SGA M+ + R ++ GS++ + A + + +
Sbjct: 124 LMGSVIGRNGLKIKAIQDSSGARMVASKDMLPQSTERIVEVQGSSESIGRAIEEIGRCLL 183
Query: 321 SQLIQQAGA 329
+ G
Sbjct: 184 EDWERGVGT 192
>gi|294657857|ref|XP_460153.2| DEHA2E19492p [Debaryomyces hansenii CBS767]
gi|199432999|emb|CAG88426.2| DEHA2E19492p [Debaryomyces hansenii CBS767]
Length = 347
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 24/273 (8%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG+ G I IREET I+ ER++ +S + D
Sbjct: 67 YRVLVSAKESGCLIGQNGAVIDSIREETNTKAGISKLQPGSHERILTVSG-----TLDDC 121
Query: 112 ENALQQIA-ALILKDDDSNSEASKVAAGHVAAN--------TIRLLIAGSQAGCLIGMSG 162
AL A AL + ++ S +++N +RLLI +Q G LIG G
Sbjct: 122 AKALSYFAQALCNANIENLVSYSYFPLKQLSSNPCVEGETTILRLLIPNAQMGTLIGSKG 181
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++++ + ++ I + + LP ++R+V++ G V + ++L I L E+
Sbjct: 182 ARIQQIQANYNISM-IASKSFLP-----GSNERLVELQGTVDNLYDSLRIISRCLIEDFS 235
Query: 223 RQV---ISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRN 279
V + A NY A Q + + VT + + +VG LIG+ GS I +R
Sbjct: 236 SIVGTSYYVPKASNY-ARNNNQTNKRFNNQNAVTTSISFANDMVGALIGKNGSRIQGVRK 294
Query: 280 ESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
SGA I + + R G+A V AK
Sbjct: 295 VSGATIGISDEVEGKPERVFTISGTAHAVEKAK 327
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 29/178 (16%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETK-ATIKIADAIARHEERVIIISSKDN 104
+ + + R+++P+ Q+G +IG +G RIQ+I+ + I + ER++ +
Sbjct: 158 EGETTILRLLIPNAQMGTLIGSKGARIQQIQANYNISMIASKSFLPGSNERLVEL----- 212
Query: 105 DNVVSDAENALQQIAALILKDDDS----------------NSEASKVAAGHVAANTIRLL 148
V + ++L+ I+ +++D S N+ + + A T +
Sbjct: 213 QGTVDNLYDSLRIISRCLIEDFSSIVGTSYYVPKASNYARNNNQTNKRFNNQNAVTTSIS 272
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
A G LIG +G I+ +R SGATI I + + +RV ISG AV
Sbjct: 273 FANDMVGALIGKNGSRIQGVRKVSGATIGISDEVE-------GKPERVFTISGTAHAV 323
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 42 KRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
KR V I + +G +IGK G RIQ +R+ + ATI I+D + ERV IS
Sbjct: 259 KRFNNQNAVTTSISFANDMVGALIGKNGSRIQGVRKVSGATIGISDEVEGKPERVFTIS 317
>gi|169844143|ref|XP_001828793.1| cytoplasmic protein [Coprinopsis cinerea okayama7#130]
gi|116510164|gb|EAU93059.1| cytoplasmic protein [Coprinopsis cinerea okayama7#130]
Length = 343
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 125/291 (42%), Gaps = 57/291 (19%)
Query: 39 SDPKRR----AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
S P+ R A + + R +V ++ G +IGK G + +RE+T ++ IA E
Sbjct: 13 SPPRSRSPTPAPNETLTLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIAGVHE 72
Query: 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
RV+ V+ + A+ + LI+ S++ A+ A+ +IRLLI+ +
Sbjct: 73 RVL---------TVTGSVEAVAKAYNLIISQLVSSNPAAPPASSSNVHTSIRLLISHNLM 123
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G +IG +G I+ ++++SGA +V + LP ++RVV++ G A+ A+ EIG
Sbjct: 124 GTIIGRNGLKIKAIQDNSGARMVA-SKEMLP-----QSTERVVEVQGSPEAIGRAVEEIG 177
Query: 215 NQLRENPPRQV--ISISPAYN-----------YSAIRPAQPFVEPTSADYV--------- 252
L E+ R + + P + YS P + D
Sbjct: 178 KCLLEDWERGLGTVLFHPGPHDDRSRSNRGGQYSGSYPTGGGSRRPNGDSANRARAPSPG 237
Query: 253 ----------------TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T + I +VG +IGR G+ I+ IR SG+ I +
Sbjct: 238 SPQSPSSSNPPATNLRTQNISIPSDMVGCIIGRSGTKITEIRRLSGSKISI 288
>gi|361066699|gb|AEW07661.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLL+A SQ G LIG G NI+K+R SGA I I ++LP CA + D +V ISGD A
Sbjct: 52 RLLVANSQIGSLIGKGGNNIQKMRTESGAQIQIPRKDELPGCAFSF--DELVVISGDATA 109
Query: 206 VLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
V AL + L ++ P++ I +S I PA
Sbjct: 110 VKKALYAVSAFLYKHLPKEQIP------WSLILPA 138
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV-----YGGKGEQKHRHIQFGGSAQQVAL 310
+L++ S +G LIG+ G+NI ++R ESGA I++ G + G A V
Sbjct: 53 LLVANSQIGSLIGKGGNNIQKMRTESGAQIQIPRKDELPGCAFSFDELVVISGDATAVKK 112
Query: 311 AKQRVDEYIYSQL 323
A V ++Y L
Sbjct: 113 ALYAVSAFLYKHL 125
>gi|348564372|ref|XP_003467979.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Cavia porcellus]
Length = 741
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 122/269 (45%), Gaps = 43/269 (15%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 353 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 412
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 413 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 458
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 459 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 514
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA------DYVTFEMLISESL---- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 515 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMPPYPQFEQSETETVHLFI 574
Query: 263 ----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 575 PALSVGAIIGKQGQHIKQLSRFAGASIKI 603
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 68/283 (24%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA------------- 86
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 430 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 489
Query: 87 -------DAIARHEERVI--IISSKDNDNVVSDAE---------NALQQIAALILKDDDS 128
+ A+ EE ++ I S +ND + + NAL +
Sbjct: 490 ITVKGSVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPT 549
Query: 129 NSEASKVAA----GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQL 184
+ S + T+ L I G +IG GQ+I++L +GA+I I AP +
Sbjct: 550 SGPPSAMPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-APAEA 608
Query: 185 PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFV 244
P R+V I+G A A I +++E + FV
Sbjct: 609 P-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------ENFV 642
Query: 245 EPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P + + + G +IG+ G ++ ++N S A + V
Sbjct: 643 SPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 685
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 572 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 625
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A H+ + AG +IG G+ + +L+N
Sbjct: 626 FKAQGRIYGKIKEENFVSPKEEVKLEA-HIRVPSF-------AAGRVIGKGGKTVNELQN 677
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 678 LSSAEVVV------PRDQTPDENDQVVVKITG 703
>gi|390597786|gb|EIN07185.1| hypothetical protein PUNSTDRAFT_53562 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 356
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 137/308 (44%), Gaps = 53/308 (17%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R ++ ++ +IGK G + +IR+++ A + ++++I + ER++ NV
Sbjct: 56 MRCLIVTQDASIIIGKGGAHVNEIRQKSGARVVVSESIPGNPERIL--------NVSGPL 107
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + ++ + +D +++ V A TI+ +I S+ G +IG G I++++ +
Sbjct: 108 DAVSKAFGLIVRRINDEPFDSASVPGSR--AVTIKFMIPNSRMGSVIGKGGSKIKEIQEA 165
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ------- 224
SGA + + LP ++RV+ +SG A+ A IGN L E RQ
Sbjct: 166 SGARLN-ASEGMLP-----GSTERVLSVSGVADAIHIATYYIGNILIEANERQPHAANSS 219
Query: 225 -------VISISPAYNYSAIRPA--QPFVEPTSADYV-----TFEMLISESLVGGLIGRC 270
PA S+ P P+ PT+A T ++ I LVG +IG+
Sbjct: 220 YRPSSYSRRPPYPATGGSSYVPGYTNPYPPPTAAALAHGQLQTQQIYIPNDLVGCIIGKG 279
Query: 271 GSNISRIRNESGAMIKVY------------GGKGEQKHRHIQFGGSAQQVALAKQRVDEY 318
G+ I+ IR+ S + IK+ G + R + G+ + +A Q
Sbjct: 280 GAKINEIRHMSASQIKIMEPGATGQAGADGAPAGSENERLVVITGAPANIQMAVQ----L 335
Query: 319 IYSQLIQQ 326
+YS+L Q+
Sbjct: 336 LYSRLEQE 343
>gi|363744462|ref|XP_425032.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Gallus gallus]
Length = 430
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 32/231 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + + +I E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEML 257
+ + I + + E+P + +P P + DY F M
Sbjct: 179 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMF 218
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 354 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 413
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 414 QYLLQNSVKQYA 425
>gi|336367212|gb|EGN95557.1| hypothetical protein SERLA73DRAFT_186638 [Serpula lacrymans var.
lacrymans S7.3]
Length = 370
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 50/265 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ NV
Sbjct: 68 IHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERIL--------NVSG 119
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
+ + ++ + +D + V A TI+ +I S+ G +IG G I++++
Sbjct: 120 PLDAVSKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFMIPNSRMGSVIGKQGSKIKEIQ 177
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE---------- 219
++SGA + + LP ++RV+ ++G A+ A IGN L E
Sbjct: 178 DASGARLN-ASEGMLP-----GSTERVLSVAGVADAIHIATYYIGNILIEAQERMPSSSH 231
Query: 220 -------NP----PRQVISISPAYNYSAIRPAQPF------VEPTSADYVTFEMLISESL 262
NP P Q S P Y +QPF T ++ I L
Sbjct: 232 SSYRPSSNPSRRAPYQGSSYVPGY-------SQPFGSGPPPPHNPPQQLQTQQIYIPNDL 284
Query: 263 VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ GS I+ IR+ S + IK+
Sbjct: 285 VGCIIGKGGSKINEIRHMSASQIKI 309
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 30/148 (20%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R LI A +IG G ++ ++R SGA +++ +P +R++ +SG +
Sbjct: 70 MRCLIVTQDASIIIGKGGSHVNEIREKSGARVMV--SESIP-----GNPERILNVSGPLD 122
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT--SADYVTFEMLISESL 262
AV A I ++ + +PF P+ + VT + +I S
Sbjct: 123 AVSKAFGLIVRRIND---------------------EPFDVPSVPGSRAVTIKFMIPNSR 161
Query: 263 VGGLIGRCGSNISRIRNESGAMIKVYGG 290
+G +IG+ GS I I++ SGA + G
Sbjct: 162 MGSVIGKQGSKIKEIQDASGARLNASEG 189
>gi|296420990|ref|XP_002840050.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636260|emb|CAZ84241.1| unnamed protein product [Tuber melanosporum]
Length = 386
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 19/209 (9%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DG+ EG+ + + R IV S++ G +IGK G + +REET ++ +
Sbjct: 35 DGDHEGARTEEEYAQSPLTLRAIVSSKEAGVIIGKAGKNVADLREETGVKAGVSKVVTGI 94
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKV-AAGHVAANTIRLLIAG 151
+RV+ ++ + A ++ +L +S S + T+RLLI+
Sbjct: 95 PDRVLTVTGP-----LDGVAKAYAMVSQTLL-----DSPPSTIGGGPPPGPGTLRLLISH 144
Query: 152 SQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALV 211
+Q G +IG G I+ +++ SG T + A LP ++RVV ++GD A+ A+
Sbjct: 145 NQMGTIIGRQGLKIKHIQDVSG-TRMTAAKEMLP-----QSTERVVDVAGDPEAIRTAIW 198
Query: 212 EIGNQLRENPPRQVISISPAYNYSAIRPA 240
EIG L ++ R ++ YN + P
Sbjct: 199 EIGKCLVDDWQRGTGTV--LYNPAVRSPG 225
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 35/147 (23%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG-----ATIVILAPNQLPLCASAHESDRVVQ 198
T+R +++ +AG +IG +G+N+ LR +G + +V P DRV+
Sbjct: 53 TLRAIVSSKEAGVIIGKAGKNVADLREETGVKAGVSKVVTGIP------------DRVLT 100
Query: 199 ISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLI 258
++G + V A + L ++PP + T +LI
Sbjct: 101 VTGPLDGVAKAYAMVSQTLLDSPPSTIGGGP------------------PPGPGTLRLLI 142
Query: 259 SESLVGGLIGRCGSNISRIRNESGAMI 285
S + +G +IGR G I I++ SG +
Sbjct: 143 SHNQMGTIIGRQGLKIKHIQDVSGTRM 169
>gi|73976022|ref|XP_863341.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
isoform 7 [Canis lupus familiaris]
Length = 580
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 45/271 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFE---------M 256
+ S++ P N +A+ P PTS Y FE +
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQAPQTETVHL 411
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I VG +IG+ G +I ++ +GA IK+
Sbjct: 412 FIPALSVGAIIGKQGQHIKQLSRFAGASIKI 442
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 113/287 (39%), Gaps = 74/287 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA--------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+G +A T+ L I G +IG GQ+I++L +GA+I I A
Sbjct: 385 PTSGPPSAMTPPYPQFEQAPQTETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-A 443
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
P + P R+V I+G A A I +++E
Sbjct: 444 PAEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE--------------------- 477
Query: 241 QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 ENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 524
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 24/165 (14%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIII 99
P+ Q + +P+ +G +IGK+G I+++ A+IKIA A A + R++II
Sbjct: 398 PQFEQAPQTETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVII 457
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ +A+ Q +K+++ S E K+ A + + AG +
Sbjct: 458 TGP------PEAQFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRV 503
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR-VVQISG 201
IG G+ + +L+N S A +V+ P + E+D+ VV+I+G
Sbjct: 504 IGKGGKTVNELQNLSSAEVVV------PRDQTPDENDQVVVKITG 542
>gi|268570691|ref|XP_002640810.1| C. briggsae CBR-PES-4 protein [Caenorhabditis briggsae]
Length = 447
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ +++G +IGK+G +I+KIREE+ A I I+D ER++ I+ V+ A
Sbjct: 77 RLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSC--PERIVTITG--TLGVIGKAF 132
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
N + ++D + V + T+R+++ +Q G LIG G I+ +R ++
Sbjct: 133 NMVCNKF-----EEDMLLLPNSVPKPPI---TMRVIVPATQCGSLIGKGGSKIKDIREAT 184
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
GA+I + A LP H ++R V +SG A+ + ++ L E
Sbjct: 185 GASIQV-ASEMLP-----HSTERAVTLSGTADAINLCMTQVCQILLE 225
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 29/177 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G I+K+R SGA I I + +R+V I+G +
Sbjct: 75 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI---------SDGSCPERIVTITGTL 125
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
+ A + N+ E+ + + P S +P +T +++ +
Sbjct: 126 GVIGKAFNMVCNKFEED-----MLLLPN---SVPKPP-----------ITMRVIVPATQC 166
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYI 319
G LIG+ GS I IR +GA I+V R + G+A + L +V + +
Sbjct: 167 GSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINLCMTQVCQIL 223
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I+ IRE T A+I++A + H ER + +S
Sbjct: 155 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSG------T 208
Query: 109 SDAEN-ALQQIAALILK 124
+DA N + Q+ ++L+
Sbjct: 209 ADAINLCMTQVCQILLE 225
>gi|402860703|ref|XP_003894762.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Papio anubis]
Length = 536
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 132/314 (42%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 273
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A +EI +LRE +++++ P N SA+ P
Sbjct: 274 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLSPPAGPRGAPPAAPY 333
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 334 HPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLA 391
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 392 RFAGASIKIAPAEG 405
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 353 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 412
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 413 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 460
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 461 VIGKGGKTVNELQNLTSAEVIV 482
>gi|397470081|ref|XP_003806662.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Pan paniscus]
gi|179479866|gb|ACB86625.1| insulin-like 2 growth factor 2-binding protein 2 [Homo sapiens]
Length = 542
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 103 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 160
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 161 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 214
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 215 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 262
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 263 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 322
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 323 VLSPPAGPRGAPPAAPYHPFT--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQ 380
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 381 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 411
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 419 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|189238744|ref|XP_972178.2| PREDICTED: similar to P-element somatic inhibitor [Tribolium
castaneum]
Length = 727
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 126/287 (43%), Gaps = 45/287 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
I VP + +G +IG+ G +I +++ E+ I++A +RV +S +
Sbjct: 101 IKVPDKMVGLIIGRGGEQITRLQSESGCKIQMAPDSQGMPDRVCSLSG---------TKE 151
Query: 114 ALQQIAALILK----------DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
A+ + LI+ + G N + ++I G + G +IG G+
Sbjct: 152 AINRAKELIMNIVHQRGMNNMNQGMGGGGGGGGGGGGGRNFVEIMIPGPKVGLIIGKGGE 211
Query: 164 NIEKLRNSSGATIVIL--APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
I++L+ SGA +V++ PNQ E ++ ++ISGD + VE QL +
Sbjct: 212 TIKQLQEKSGAKMVVIQDGPNQ--------EQEKPLRISGDP-----SKVEYAKQLVYD- 257
Query: 222 PRQVISISPAYNYSAIRPA------QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
+I+ NY+ Q + + E+L+ VG +IG+ G I
Sbjct: 258 ---LIAEKEMQNYNRRGGGGRQDDRQQYNDYGGGGGNEAEVLVPRQAVGVVIGKGGDMIK 314
Query: 276 RIRNESGAMIKVYGGKGE-QKHRHIQFGGSAQQVALAKQRVDEYIYS 321
+I+ E+GA ++ + E R G+ +QV A+QR++E I S
Sbjct: 315 KIQAETGARVQFQQAREEGPGERRCYLSGTPKQVEQARQRIEELIDS 361
>gi|74225344|dbj|BAE31602.1| unnamed protein product [Mus musculus]
Length = 459
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G+R ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GERPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ + I + + E+P + +P P + DY F M+ +
Sbjct: 179 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 221
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + + +A+
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQNAQ 424
Query: 113 NALQQI--AALILKD 125
LQ + +LKD
Sbjct: 425 YLLQNSVKSMQMLKD 439
>gi|397470077|ref|XP_003806660.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Pan paniscus]
gi|179479906|gb|ACB86626.1| insulin-like 2 growth factor 2-binding protein 2 [Homo sapiens]
Length = 536
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 132/314 (42%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 273
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A +EI +LRE +++++ P N SA+ P
Sbjct: 274 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLSPPAGPRGAPPAAPY 333
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 334 HPFT--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLA 391
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 392 RFAGASIKIAPAEG 405
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 353 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 412
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 413 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 460
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 461 VIGKGGKTVNELQNLTSAEVIV 482
>gi|354490712|ref|XP_003507500.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Cricetulus griseus]
Length = 731
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 120/270 (44%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 342 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKPITILST 401
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A A + I ++ K+ +V +++L + G LIG
Sbjct: 402 PEG------ASAACKSILEIMHKEAQDTKLTEEVP--------LKILAHNNFVGRLIGKE 447
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 448 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCARAEEEIMKKIRESY 503
Query: 222 PRQVISIS------PAYNYSAI------------------RPAQPFVEPTSADYVTFEML 257
+ S++ P N +A+ P+ + ++ T +
Sbjct: 504 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSTMTPPYPQFEQSETETVHLF 563
Query: 258 ISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I VG +IG+ G +I ++ +GA IK+
Sbjct: 564 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 593
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 106/277 (38%), Gaps = 63/277 (22%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-------------------- 86
++V +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 426 TEEVPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNV 485
Query: 87 DAIARHEERVI--IISSKDNDNVVSDAENAL---QQIAALILKDDDSNSEASKVAAG--- 138
+ AR EE ++ I S +ND + + L + AL L S
Sbjct: 486 ETCARAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSTM 545
Query: 139 --------HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
T+ L I G +IG GQ+I++L +GA+I I AP + P
Sbjct: 546 TPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-APAEAP----- 599
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
R+V I+G A A I +++E + FV P
Sbjct: 600 DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------ENFVSPKEEV 638
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ + + G +IG+ G ++ ++N S A + V
Sbjct: 639 KLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 675
>gi|426227471|ref|XP_004007841.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 1 [Ovis aries]
Length = 580
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 45/271 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFE---------M 256
+ S++ P N +A+ P PTS Y FE +
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQQSETETVHL 411
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I VG +IG+ G +I ++ +GA IK+
Sbjct: 412 FIPALSVGAIIGKQGQHIKQLSRFAGASIKI 442
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 113/287 (39%), Gaps = 74/287 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA--------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+G +A T+ L I G +IG GQ+I++L +GA+I I A
Sbjct: 385 PTSGPPSAMTPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-A 443
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
P + P R+V I+G A A I +++E
Sbjct: 444 PAEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE--------------------- 477
Query: 241 QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 ENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 524
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 24/165 (14%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIII 99
P+ +++ + +P+ +G +IGK+G I+++ A+IKIA A A + R++II
Sbjct: 398 PQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVII 457
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ +A+ Q +K+++ S E K+ A + + AG +
Sbjct: 458 TGP------PEAQFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRV 503
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR-VVQISG 201
IG G+ + +L+N S A +V+ P + E+D+ VV+I+G
Sbjct: 504 IGKGGKTVNELQNLSSAEVVV------PRDQTPDENDQVVVKITG 542
>gi|410952456|ref|XP_003982896.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 2 [Felis catus]
Length = 580
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 45/271 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFE---------M 256
+ S++ P N +A+ P PTS Y FE +
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQAPETETVHL 411
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I VG +IG+ G +I ++ +GA IK+
Sbjct: 412 FIPALSVGAIIGKQGQHIKQLSRFAGASIKI 442
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 113/287 (39%), Gaps = 74/287 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA--------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
+G +A T+ L I G +IG GQ+I++L +GA+I I A
Sbjct: 385 PTSGPPSAMTPPYPQFEQAPETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-A 443
Query: 181 PNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPA 240
P + P R+V I+G A A I +++E
Sbjct: 444 PAEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE--------------------- 477
Query: 241 QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 ENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 524
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 411 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 464
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 465 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 516
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 517 LSSAEVVV------PRDQTPDENDQVVVKITG 542
>gi|402860705|ref|XP_003894763.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 4 [Papio anubis]
Length = 542
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 103 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 160
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 161 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 214
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 215 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 262
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 263 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 322
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 323 VLSPPAGPRGAPPAAPYHPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEVVNLFIPTQ 380
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 381 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 411
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 419 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|358255903|dbj|GAA57520.1| heterogeneous nuclear ribonucleoprotein K, partial [Clonorchis
sinensis]
Length = 1085
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 25/162 (15%)
Query: 62 GKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121
G +IGK G IQ+IREE + I D+ ERV+++ D + L+
Sbjct: 3 GVIIGKGGENIQRIREEYSVKVMIPDS--NGPERVLVLDG--------DLGSVLEIFVEN 52
Query: 122 ILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+ + ++ E +RLL+ SQAGC+IG G I++LR SG + L
Sbjct: 53 LERMQNNRDEGVD----------LRLLVHQSQAGCIIGRGGYKIKELREQSG--LQTLKV 100
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
Q+ LC + +DRV+Q+ GD+ V++ L I L PP+
Sbjct: 101 YQM-LCPGS--TDRVIQLVGDLDKVVDCLQAIAELLEGAPPK 139
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ V ++ IG ++G+ G RI ++R+E+ A IKI+ E+R+I I+ + +A+
Sbjct: 282 QVSVSNKMIGAIMGRAGVRINQVRQESNADIKISRQEPGVEDRIITITGTPEQ--IQNAQ 339
Query: 113 NALQQIAALILKDDDSN 129
LQ L+ +N
Sbjct: 340 FLLQMWKILVSCSSSTN 356
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 238 RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHR 297
R A F+ PT+ T ++ +S ++G ++GR G I+++R ES A IK+ + + R
Sbjct: 269 RVAMNFLTPTT----TTQVSVSNKMIGAIMGRAGVRINQVRQESNADIKISRQEPGVEDR 324
Query: 298 HIQFGGSAQQVALAK 312
I G+ +Q+ A+
Sbjct: 325 IITITGTPEQIQNAQ 339
>gi|336379931|gb|EGO21085.1| hypothetical protein SERLADRAFT_398361 [Serpula lacrymans var.
lacrymans S7.9]
Length = 304
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 50/263 (19%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ NV
Sbjct: 4 MRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERIL--------NVSGPL 55
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + ++ + +D + V A TI+ +I S+ G +IG G I++++++
Sbjct: 56 DAVSKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFMIPNSRMGSVIGKQGSKIKEIQDA 113
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE------------ 219
SGA + + LP ++RV+ ++G A+ A IGN L E
Sbjct: 114 SGARLN-ASEGMLP-----GSTERVLSVAGVADAIHIATYYIGNILIEAQERMPSSSHSS 167
Query: 220 -----NP----PRQVISISPAYNYSAIRPAQPF------VEPTSADYVTFEMLISESLVG 264
NP P Q S P Y +QPF T ++ I LVG
Sbjct: 168 YRPSSNPSRRAPYQGSSYVPGY-------SQPFGSGPPPPHNPPQQLQTQQIYIPNDLVG 220
Query: 265 GLIGRCGSNISRIRNESGAMIKV 287
+IG+ GS I+ IR+ S + IK+
Sbjct: 221 CIIGKGGSKINEIRHMSASQIKI 243
>gi|430813652|emb|CCJ29027.1| unnamed protein product [Pneumocystis jirovecii]
Length = 383
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 53/301 (17%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G R DGE G + +Q V R +V +++ G +IG++G + ++R ++
Sbjct: 50 GVDRLFDGEGRGEEYDGYGGSQ-VTLRALVSTKEAGIIIGRQGKNVAELRGANGIKAGVS 108
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
+ +RV+ IS + VS A A+ Q A I D+ + ++ ++IR
Sbjct: 109 KVVPNIHDRVLTISGSLDG--VSKAYAAIAQ--AFI--DNPIGHSTNHASSSSEPQSSIR 162
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ + G +IG G I+ +++ SGA ++ LP ++R+V++ G V ++
Sbjct: 163 LLISHNMMGTIIGRQGLKIKHIQDLSGARMIAF-KEILP-----QSTERIVEVQGVVSSI 216
Query: 207 LNALVEIGNQLRENPPRQV--ISISPAYNYSA-----------IRPAQP----------- 242
A+ EIG L ++ R + + +P+ S+ + AQP
Sbjct: 217 QTAIWEIGKCLIDDWERGIGTVFYNPSLRLSSTLVPGHQGNSILSGAQPGHYLQYQRQSS 276
Query: 243 -------------FVEP---TSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
F EP ++ D + I +VG +IGR GS IS IR SG+ I
Sbjct: 277 QMNYSRLGNMPSHFQEPLDTSNQDIRVQNISIPSDMVGCIIGRGGSKISEIRRISGSKIS 336
Query: 287 V 287
+
Sbjct: 337 I 337
>gi|300796214|ref|NP_001179217.1| insulin-like growth factor 2 mRNA-binding protein 3 [Bos taurus]
gi|296488613|tpg|DAA30726.1| TPA: insulin-like growth factor 2 mRNA binding protein 3 [Bos
taurus]
Length = 580
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 45/271 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFE---------M 256
+ S++ P N +A+ P PTS Y FE +
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAITPPYPQFEQQSETETVHL 411
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I VG +IG+ G +I ++ +GA IK+
Sbjct: 412 FIPALSVGAIIGKQGQHIKQLSRFAGASIKI 442
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 70/285 (24%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA------------- 86
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 87 -------DAIARHEERVI--IISSKDNDNVVSDAE---------NALQQIAALILKDDDS 128
+ A+ EE ++ I S +ND + + NAL +
Sbjct: 327 ITVKGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPT 386
Query: 129 NSEASKVAAGH------VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
+ S + + T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 387 SGPPSAITPPYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-APA 445
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQP 242
+ P R+V I+G A A I +++E +
Sbjct: 446 EAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------EN 479
Query: 243 FVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 480 FVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 524
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 24/165 (14%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIII 99
P+ +++ + +P+ +G +IGK+G I+++ A+IKIA A A + R++II
Sbjct: 398 PQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVII 457
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+ +A+ Q +K+++ S E K+ A + + AG +
Sbjct: 458 TGP------PEAQFKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRV 503
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR-VVQISG 201
IG G+ + +L+N S A +V+ P + E+D+ VV+I+G
Sbjct: 504 IGKGGKTVNELQNLSSAEVVV------PRDQTPDENDQVVVKITG 542
>gi|390347463|ref|XP_792931.3| PREDICTED: poly(rC)-binding protein 3-like [Strongylocentrotus
purpuratus]
Length = 369
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 112/278 (40%), Gaps = 48/278 (17%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+IVP+ Q G +IGK G +I+ IRE T A+I +A + + ER + IS
Sbjct: 18 VSLRLIVPTSQCGSLIGKGGSKIKDIRETTSASITVASEMLPSSTERAVTISGTPE---- 73
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
A+ Q+ ++L +S + + + A + GS + M+ Q++ +
Sbjct: 74 -AITKAIYQVCCVML---ESPPKGATIPYRPKPATAPIIFAGGS-----VSMTEQHLHQQ 124
Query: 169 RNSSGATIVILA-PN------QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+ + LA P+ QL L H I G P AL + Q P
Sbjct: 125 QAYAVHGNYALAQPDLTKLHHQLAL----HHQQTPYAIPGQTPFSPAALTQFAAQTAAPP 180
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
P+ T E+ I L+G +IGR G+ I IR S
Sbjct: 181 PQ-----------------------VQGQATTQEITIPNHLIGCVIGRGGTKIQEIRQMS 217
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
GA IK+ + R + GS + VA+A+ ++ +
Sbjct: 218 GANIKIANSQEGSTDRSVTITGSPESVAVAQCLINTSL 255
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
P + + Q I +P+ IG VIG+ G +IQ+IR+ + A IKIA++ +R + I+
Sbjct: 179 PPPQVQGQATTQEITIPNHLIGCVIGRGGTKIQEIRQMSGANIKIANSQEGSTDRSVTIT 238
>gi|355559801|gb|EHH16529.1| hypothetical protein EGK_11818, partial [Macaca mulatta]
Length = 542
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 132/314 (42%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 120 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 177
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 178 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 223
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 224 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 279
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A +EI +LRE +++++ P N SA+ P
Sbjct: 280 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLSPPAGPRGAPPAAPY 339
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 340 HPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLA 397
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 398 RFAGASIKIAPAEG 411
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 17/144 (11%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQA 154
+II+ +A+ Q LK++ + E K+ A + + S A
Sbjct: 419 VIITGP------PEAQFKAQGRIFGKLKEEKFFTPKEEVKLEA--------HIRVPSSTA 464
Query: 155 GCLIGMSGQNIEKLRNSSGATIVI 178
G +IG G+ + +L+N + A +++
Sbjct: 465 GRVIGKGGKTVNELQNLTSAEVIV 488
>gi|344270303|ref|XP_003406985.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
[Loxodonta africana]
Length = 492
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 44/270 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 103 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 162
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 163 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 208
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 209 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 264
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFEMLISESL--- 262
+ S++ P N +A+ P PTS Y FE +E++
Sbjct: 265 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETETVHLF 324
Query: 263 -----VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IG+ G +I ++ +GA IK+
Sbjct: 325 IPALSVGAIIGKQGQHIKQLSRFAGASIKI 354
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 111/284 (39%), Gaps = 69/284 (24%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA------------- 86
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 180 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 239
Query: 87 -------DAIARHEERVI--IISSKDNDNVVSDAE---------NALQQIAALILKDDDS 128
+ A+ EE ++ I S +ND + + NAL +
Sbjct: 240 ITVKGSVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPT 299
Query: 129 NSEASKVAAGH-----VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
+ S + + T+ L I G +IG GQ+I++L +GA+I I AP +
Sbjct: 300 SGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-APAE 358
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPF 243
P R+V I+G A A I +++E + F
Sbjct: 359 AP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------ENF 392
Query: 244 VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V P + + + G +IG+ G ++ ++N S A + V
Sbjct: 393 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 436
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 323 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 376
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 377 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 428
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 429 LSSAEVVV------PRDQTPDENDQVVVKITG 454
>gi|126138010|ref|XP_001385528.1| hypothetical protein PICST_62156 [Scheffersomyces stipitis CBS
6054]
gi|126092806|gb|ABN67499.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 343
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 121/284 (42%), Gaps = 35/284 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG+ G I IR ET I+ ER++ +S + D
Sbjct: 69 YRVLVSAKESGCLIGQNGQVIDSIRAETNTKAGISRLQPGSHERILTVSG-----TLDDC 123
Query: 112 ENALQQIAALILKD--DDSNSEASKVAAGHVA----ANTIRLLIAGSQAGCLIGMSGQNI 165
AL A + + N K + + +RLLI SQ G LIG G I
Sbjct: 124 AKALSYFAQALCNSTIETYNFFPLKQLSSNPCIEHQTTILRLLIPNSQMGTLIGSKGLRI 183
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
++++N ++ I + + LP ++R+V++ G V + +AL I L E+ V
Sbjct: 184 QQIQNKYNISM-IASKSFLP-----GSNERLVELQGSVNDLYDALRIISRCLIEDFSSIV 237
Query: 226 ---ISISPAYNY---SAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRN 279
I ++Y S+ R A P T + +VG LIG+ GS I +R
Sbjct: 238 GTNYYIPRGHHYNNSSSPRGANPIT--------TASISFPNDIVGALIGKNGSRIQGVRK 289
Query: 280 ESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
SGA I + + R GSA V AK E +Y L
Sbjct: 290 ISGATIGISEEVEGKPERIFTLSGSAHAVEKAK----ELLYHNL 329
>gi|431908994|gb|ELK12585.1| Insulin-like growth factor 2 mRNA-binding protein 3 [Pteropus
alecto]
Length = 613
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 120/271 (44%), Gaps = 45/271 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KPKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFE---------M 256
+ S++ P N +A+ P PTS Y FE +
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQFEQQSETETVHL 411
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I VG +IG+ G +I ++ +GA IK+
Sbjct: 412 FIPALSVGAIIGKQGQHIKQLSRFAGASIKI 442
>gi|473912|gb|AAA21731.1| phosphoprotein [Mus cookii]
Length = 464
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQQIAALILKDDDSNSEASKV----- 135
D+ ER++ IS+ ++ E LQ + S+A +V
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVEVLNYPH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI + AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQTLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISES 261
+ L +I L E P S P + + P + + D +LI ++
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVEVLNYPHYKGSDFD-CELRLLIHQT 154
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVY 288
L GG+IG G+ I +R + IK++
Sbjct: 155 LAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|395536709|ref|XP_003770354.1| PREDICTED: uncharacterized protein LOC100914843 [Sarcophilus
harrisii]
Length = 1087
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 22/191 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +AK D RI+VP++ +G +IGKEG I+ + ++T++ + I +
Sbjct: 516 REHGHSPGG--PAQAKQLDFPLRILVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKEN 573
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I +S + A A + I ++ K+ D ++ +++L
Sbjct: 574 AGASEKPVTIHASPEG------ASEACRMILEIMQKEADETKAVEEIP--------LKIL 619
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
S G LIG G+N++K+ +G I I L + + +R + + G + A +
Sbjct: 620 AHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDL----TIYNPERTITVKGPIEACSS 675
Query: 209 ALVEIGNQLRE 219
A VEI +LRE
Sbjct: 676 AEVEIMRKLRE 686
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISSKDNDN 106
Q+V++ + +P++ +G +IGK+GH I+++ A+IKIA ER++II+
Sbjct: 910 QEVVY-LFIPTQAVGAIIGKKGHHIKQLARFAGASIKIAPPEGPEASERMVIITGPPEAQ 968
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
A +I + +++ N + H+ + S AG +IG G+ +
Sbjct: 969 F-----KAQGRIFGKLKEENFFNPKEEVKLKAHIR-------VPSSAAGRVIGKGGKTVN 1016
Query: 167 KLRNSSGATIVI 178
+L N + A +++
Sbjct: 1017 ELHNLTSAEVIV 1028
>gi|332215037|ref|XP_003256643.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 6 [Nomascus leucogenys]
Length = 542
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 103 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 160
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 161 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 214
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 215 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 262
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 263 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 322
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 323 VLSPPAGPRGAPPAAPYHPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQ 380
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 381 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 411
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 359 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 418
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 419 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 466
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 467 VIGKGGKTVNELQNLTSAEVIV 488
>gi|332215029|ref|XP_003256639.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Nomascus leucogenys]
Length = 536
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 132/314 (42%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 114 REQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 171
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 172 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 217
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 218 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 273
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A +EI +LRE +++++ P N SA+ P
Sbjct: 274 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLSPPAGPRGAPPAAPY 333
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 334 HPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLA 391
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 392 RFAGASIKIAPAEG 405
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 353 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 412
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 413 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 460
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 461 VIGKGGKTVNELQNLTSAEVIV 482
>gi|392333155|ref|XP_003752811.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V I++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELHILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNT 447
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 448 QYLLQNSVKQYSGKFF 463
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+ +L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LHILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
>gi|74198765|dbj|BAE30613.1| unnamed protein product [Mus musculus]
Length = 450
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
G+R ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GERPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + ILK E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ + I + + E+P + +P P + DY F M+ +
Sbjct: 179 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 221
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + + +A+
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQNAQ 424
Query: 113 NALQQIAALILKDDDSNS 130
LQ + DSN+
Sbjct: 425 YLLQNSVKSMQMLKDSNA 442
>gi|345329393|ref|XP_001506808.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ornithorhynchus anatinus]
Length = 464
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
++ +
Sbjct: 241 VMFDD 245
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|332023471|gb|EGI63714.1| Far upstream element-binding protein 1 [Acromyrmex echinatior]
Length = 731
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 44/288 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
I VP + +G +IG+ G +I +++ ET I++A ERV ++ +
Sbjct: 105 IRVPDKMVGLIIGRGGEQITRLQTETGCKIQMAPESGGLPERVCTLTG---------SRE 155
Query: 114 ALQQIAALILK--DDDSNSEA-------SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
A+ + L+L + S SE + + ++I G + G +IG G+
Sbjct: 156 AVNRAKELVLSIVNQRSRSEGIGDMNMSGSGSGMMGHPGFVEIMIPGPKVGLIIGKGGET 215
Query: 165 IEKLRNSSGATIVIL--APNQLPLCASAHESDRVVQISGDVPAVLNA-------LVEIGN 215
I++L+ SGA +V++ P+Q E ++ ++I+GD V A + E
Sbjct: 216 IKQLQEKSGAKMVVIQEGPSQ--------EQEKPLRITGDPQKVEYAKQLVYELIAEKEI 267
Query: 216 QLRENPPRQVISISPAY-NYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
Q+ R + Y N S P ++D V E+L+ + VG +IG+ G I
Sbjct: 268 QMFHRGGRGATDRTGNYSNDSGFNHG-----PANSDGV--EVLVPRAAVGVVIGKGGDMI 320
Query: 275 SRIRNESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAKQRVDEYIYS 321
+I+ ESGA ++ G+ E R G Q V A+QR+ E I S
Sbjct: 321 KKIQAESGAKVQFQQGREEGPGDRKCLLSGKHQAVEQARQRIQELIDS 368
>gi|4191610|gb|AAD09827.1| IGF-II mRNA-binding protein 2 [Homo sapiens]
gi|18204201|gb|AAH21290.1| Insulin-like growth factor 2 mRNA binding protein 2 [Homo sapiens]
gi|123982692|gb|ABM83087.1| insulin-like growth factor 2 mRNA binding protein 2 [synthetic
construct]
gi|157928388|gb|ABW03490.1| insulin-like growth factor 2 mRNA binding protein 2 [synthetic
construct]
Length = 598
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 159 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 216
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 217 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 270
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 271 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 318
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 319 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 378
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 379 VLSPPAGPRGAPPAAPYHPFT--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQ 436
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 437 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 467
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 415 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 474
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 475 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 522
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 523 VIGKGGKTVNELQNLTSAEVIV 544
>gi|353243541|emb|CCA75070.1| related to poly(rC)-binding protein 3 [Piriformospora indica DSM
11827]
Length = 631
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 15/178 (8%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQD L R +V ++ G +IGK G + +RE+T ++ +A ERV+ ++
Sbjct: 274 AQDTLTLRALVGTKDAGIIIGKAGKNVADLREQTGVKAGVSKVVAGVHERVLSVTGS--- 330
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNI 165
V A I ++ S++ A + H IRLLI+ + G +IG +G I
Sbjct: 331 --VQGVAKAYTTILQQLVTSSPSSTTAPANPSNH---TIIRLLISHNLMGTIIGRNGLKI 385
Query: 166 EKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ +++SSGA +V + LP ++R+V++ G A+ A+ EIG L E+ R
Sbjct: 386 KNIQDSSGARMVA-QKDMLP-----QSTERIVEVQGSPEAIGKAIEEIGKCLLEDWER 437
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R L+ AG +IG +G+N+ LR +G + + A HE RV+ ++G V
Sbjct: 279 TLRALVGTKDAGIIIGKAGKNVADLREQTGVKAGVSK-----VVAGVHE--RVLSVTGSV 331
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
V A I QL ++ SP+ S PA P +++ +LIS +L+
Sbjct: 332 QGVAKAYTTILQQL--------VTSSPS---STTAPANP------SNHTIIRLLISHNLM 374
Query: 264 GGLIGRCGSNISRIRNESGA 283
G +IGR G I I++ SGA
Sbjct: 375 GTIIGRNGLKIKNIQDSSGA 394
>gi|47214279|emb|CAG01336.1| unnamed protein product [Tetraodon nigroviridis]
Length = 408
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 31/269 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I+++RE T A +++A D + ER + IS +
Sbjct: 150 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAII- 208
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L +S + + + A+T ++ +G QA + G
Sbjct: 209 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFSGGQAYTIQGQ-------- 252
Query: 169 RNSSGATIVILAPNQLP-LCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
I P+QL L A + + PA R P+ ++S
Sbjct: 253 -------YAIPHPDQLSKLHQLAMQQPPFTPLGQTTPAFPGTYPPT---WRPRWPQLLLS 302
Query: 228 ISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
PA S+ A T E+ I L+G +IGR G+ I+ IR SGA IK+
Sbjct: 303 FVPADARSSSSVTAALDAGNQAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI 360
Query: 288 YGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
R I G+ ++LA+ ++
Sbjct: 361 ANAMEGSSERQITITGTPANISLAQYLIN 389
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 94 ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQ 153
ER++ I+ +DA + A ++D NS ++ A T+RL++ SQ
Sbjct: 108 ERIVTITGP------TDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQ 160
Query: 154 AGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
G LIG G I+++R S+GA + + A + LP + ++R V ISG A++ + +I
Sbjct: 161 CGSLIGKGGSKIKEMRESTGAQVQV-AGDMLP-----NSTERAVTISGTPEAIIQCVKQI 214
Query: 214 GNQLRENPPR 223
+ E+PP+
Sbjct: 215 CVVMLESPPK 224
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 35/186 (18%)
Query: 121 LILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180
L++ + S KV +VAA L +GS + G+ ++K+R G +
Sbjct: 20 LLMHGKEVGSIIGKVTPANVAAP--DRLCSGSDPCSPLFQKGETVKKMREDVGGRVSTWL 77
Query: 181 PNQLPL-----------------CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+LPL + + +R+V I+G A+ A I + E+
Sbjct: 78 SGRLPLPDARLLLSFQQSGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEED--- 134
Query: 224 QVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA 283
N + PA TS VT +++ S G LIG+ GS I +R +GA
Sbjct: 135 -------IINSMSNSPA------TSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGA 181
Query: 284 MIKVYG 289
++V G
Sbjct: 182 QVQVAG 187
>gi|344282127|ref|XP_003412826.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Loxodonta africana]
Length = 599
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 177 REQGHAPGG--ASQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 235 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 280
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A
Sbjct: 281 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAT 336
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A +EI +LRE +++++ P N SA+ P
Sbjct: 337 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGAPPAPPY 396
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 397 HPFA--THSGYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLA 454
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 455 RFAGASIKIAPAEG 468
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|313228809|emb|CBY17960.1| unnamed protein product [Oikopleura dioica]
Length = 471
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 24/180 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V R ++PS+ G VIGK G I+ +R + + + D A+ ERV+ +D S
Sbjct: 134 VGHRFLIPSKMAGAVIGKGGTTIKSLRSDFACQLNVPD--AQGPERVLRFVCED-----S 186
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANT---IRLLIAGSQAGCLIGMSGQNIE 166
+ ++++ L+ D V A++ +R+L+ S+AG +IG G+ I+
Sbjct: 187 NVSPLIEKVGNLLRND--------MVERNRAQADSDIDMRMLVHQSKAGAVIGFKGETIK 238
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
LR+ +G I + Q P + H SDR+++++G + EI L + PP+ +
Sbjct: 239 GLRDKTGCKINVY---QDP---APHSSDRLIKVAGQPDKIATCFGEILLILNDIPPKGFV 292
>gi|341894976|gb|EGT50911.1| hypothetical protein CAEBREN_13773 [Caenorhabditis brenneri]
Length = 397
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E A +++ D+ ERV V +D +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVC--------TVTADEK 102
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
L + ++ + +D+ SE +R+LI S AG LIG +G I++LR
Sbjct: 103 TVLNILKDVLPRLEDNFSERDPCE--------VRMLIHQSHAGALIGRNGSKIKELREKC 154
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPA 231
A + I CA +DRV+ SG+ VL + E+ +L+E P + P+
Sbjct: 155 SARLKIFT-----GCAPG-STDRVLITSGEQKNVLAIIEEVMRELKEIPIKGSATPYLPS 208
Query: 232 YNY 234
++Y
Sbjct: 209 FHY 211
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 34/146 (23%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 102
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
VLN L ++ +L +N F E D MLI +S G
Sbjct: 103 TVLNILKDVLPRLEDN----------------------FSE---RDPCEVRMLIHQSHAG 137
Query: 265 GLIGRCGSNISRIRNESGAMIKVYGG 290
LIGR GS I +R + A +K++ G
Sbjct: 138 ALIGRNGSKIKELREKCSARLKIFTG 163
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 252 VTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALA 311
T ++ I L G +IGR G I+RIR +SGA I + G Q R I G+ QQ+ A
Sbjct: 317 TTAQVTIPSDLGGTIIGRGGERIARIRQDSGAQITLEPSNG-QPERIITIKGTEQQIHSA 375
Query: 312 KQRVDEYIYSQLIQQA 327
+Y+ Q ++ +
Sbjct: 376 -----QYLLQQCVRNS 386
>gi|332215027|ref|XP_003256638.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Nomascus leucogenys]
Length = 599
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 379
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 380 VLSPPAGPRGAPPAAPYHPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQ 437
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 468
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|291394537|ref|XP_002713869.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 3
[Oryctolagus cuniculus]
Length = 517
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 120/272 (44%), Gaps = 48/272 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 128 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 187
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 188 PEGTSA------ACKSILEIMHKEAQDTKFTEEIP--------LKILAHNNFVGRLIGKE 233
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 234 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 289
Query: 222 PRQVISIS------PAYNY--------------------SAIRPAQPFVEPTSADYVTFE 255
+ S++ P N SA+ P P +E + + T
Sbjct: 290 ENDIASMNLQAHLIPGLNLNALGLFPPTPGMPPPTPGPPSAMAPPYPPLEQSETE--TVH 347
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I VG +IG+ G +I ++ +GA IK+
Sbjct: 348 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 379
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 69/284 (24%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA------------- 86
+AQD F +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 205 EAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 264
Query: 87 -------DAIARHEERVI--IISSKDNDNVVSDAE---------NALQQIAALILKDDDS 128
+ A+ EE ++ I S +ND + + NAL +
Sbjct: 265 ITVKGSVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTPGMPPPT 324
Query: 129 NSEASKVAAGHVA-----ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
S +A + T+ L I G +IG GQ+I++L +GA+I I AP +
Sbjct: 325 PGPPSAMAPPYPPLEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-APAE 383
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPF 243
P R+V I+G A A I +++E + F
Sbjct: 384 AP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------ENF 417
Query: 244 VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V P + + + G +IG+ G ++ ++N S A + V
Sbjct: 418 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 461
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 27/185 (14%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 348 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 401
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 402 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 453
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISGDVPAVLNA---LVEIGNQLRENPPRQVI 226
S A +V+ P + E+D+ VV+I+G A A + EI Q++++ ++ +
Sbjct: 454 LSSAEVVV------PRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHHQQKAL 507
Query: 227 SISPA 231
P+
Sbjct: 508 QSGPS 512
>gi|64085377|ref|NP_006539.3| insulin-like growth factor 2 mRNA-binding protein 2 isoform a [Homo
sapiens]
gi|224471831|sp|Q9Y6M1.2|IF2B2_HUMAN RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2;
Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName:
Full=Hepatocellular carcinoma autoantigen p62; AltName:
Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ
family member 2
gi|119598617|gb|EAW78211.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_c
[Homo sapiens]
gi|158254760|dbj|BAF83353.1| unnamed protein product [Homo sapiens]
gi|410223074|gb|JAA08756.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410251296|gb|JAA13615.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410302886|gb|JAA30043.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410342487|gb|JAA40190.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
Length = 599
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 379
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 380 VLSPPAGPRGAPPAAPYHPFT--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQ 437
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 468
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|449281891|gb|EMC88850.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 330
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 115/281 (40%), Gaps = 66/281 (23%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 158
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG----QN 164
++QI ++L +S + + + A+T ++ AG QA + G
Sbjct: 159 ----QCVKQICVVML---ESPPKGATIPYRPKPAST-PVIFAGGQAYTIQGQYAIPHPDQ 210
Query: 165 IEKLRNSS---------GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
+ KL + G T +LPL +S + + Q SG
Sbjct: 211 LTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSG-------------- 256
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
L +PP T E+ I L+G +IGR G+ I+
Sbjct: 257 -LDASPPAS----------------------------THELTIPNDLIGCIIGRQGTKIN 287
Query: 276 RIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
IR SGA IK+ R I G+ ++LA+ ++
Sbjct: 288 EIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLIN 328
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK + + ++ +I + ER++ I+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKVRMSFKSLPFSFQSGARINISEGNCPERIVTITGP------T 67
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
DA + A ++D +NS ++ A T+RL++ SQ G LIG G I+++R
Sbjct: 68 DAIFKAFAMIAYKFEEDITNSMSNSTATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIR 126
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
S+GA + + A + LP + ++R V ISG A++ + +I + E+PP+
Sbjct: 127 ESTGAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 174
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 133 SKVAAGHVAAN-TIRLLIAGSQAGCLIGMSGQNIEKLRNS--SGATIVILAPNQLPLCAS 189
SKV+ G + TIRLL+ G + G +IG + + L S SGA I I +
Sbjct: 3 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKVRMSFKSLPFSFQSGARINI---------SE 53
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSA 249
+ +R+V I+G A+ A I + E+ I+ + + S TS
Sbjct: 54 GNCPERIVTITGPTDAIFKAFAMIAYKFEED-------ITNSMSNSTA---------TSK 97
Query: 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
VT +++ S G LIG+ GS I IR +GA ++V G
Sbjct: 98 PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG 137
>gi|375065844|ref|NP_001243477.1| heterogeneous nuclear ribonucleoprotein K [Canis lupus familiaris]
Length = 464
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I+K ++ TI + C H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQE-----CC-PHSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I + + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLF 181
>gi|332818640|ref|XP_001151234.2| PREDICTED: LOW QUALITY PROTEIN: insulin-like growth factor 2 mRNA
binding protein 2 isoform 7 [Pan troglodytes]
Length = 599
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 379
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 380 VLSPPAGPRGAPPAAPYHPFT--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQ 437
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 468
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|254566093|ref|XP_002490157.1| RNA binding protein with similarity to hnRNP-K that localizes to
the cytoplasm and subtelomeric DNA [Komagataella
pastoris GS115]
gi|238029953|emb|CAY67876.1| RNA binding protein with similarity to hnRNP-K that localizes to
the cytoplasm and subtelomeric DNA [Komagataella
pastoris GS115]
gi|328350558|emb|CCA36958.1| RNA-binding protein rnc1 [Komagataella pastoris CBS 7435]
Length = 379
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 116/275 (42%), Gaps = 32/275 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V R+ G +IGKEG I IR +++ + +R++ IS V
Sbjct: 100 ITHRFLVSKREAGTIIGKEGSCITSIRMGCDVKAGVSELVRGCVDRILTISGS-----VE 154
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGH---VAANTIRLLIAGSQAGCLIGMSGQNIE 166
+ A+ ++A +L D + S+ +G + IRLLI +Q G LIG G I
Sbjct: 155 NVGRAVGRLAQ-VLVDTAAFSQLDFAPSGGTSVMGVTRIRLLIPNTQMGALIGKRGIRIR 213
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN---PPR 223
L+ +V ++ PL A+ ++RVV++ G A+ +A V I L E+ P
Sbjct: 214 ALQQYHSVKMV---ASKDPL---ANSTERVVEVQGTPLAIESAAVTISKCLLEDFMLPAA 267
Query: 224 QVI---SISPAYNYSAIR--PAQPFVE-----PTSADYVTFEMLISESLVGGLIGRCGSN 273
I S PA A R F+ PTS + V F LVG +IG+ G
Sbjct: 268 DTIYYVSAPPAGYGGAARATTGDSFLNSDSLGPTSTETVYF----PGELVGAIIGKRGVR 323
Query: 274 ISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQV 308
I IR SG I + R G + V
Sbjct: 324 IQEIRKLSGCAISIDSANTTGGERRFVLTGPVRNV 358
>gi|190347114|gb|EDK39328.2| hypothetical protein PGUG_03426 [Meyerozyma guilliermondii ATCC
6260]
Length = 342
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 121/278 (43%), Gaps = 36/278 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG+ G I IR+ET I+ ER++ +S + DA
Sbjct: 62 YRVLVSAKEAGCLIGQNGQVIDSIRQETNTKAGISRLQPGSHERILTVS-----GTLDDA 116
Query: 112 ENALQQIA-ALILKDDDSNSEASKVAAGHVAA--------NTIRLLIAGSQAGCLIGMSG 162
AL A AL + ++ S S +++ +RLLI +Q G LIG G
Sbjct: 117 ARALSYFAQALCNANTETFSTYSYFPLKQLSSTPCVEGETTILRLLIPNAQMGTLIGSKG 176
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++++ + ++ I + + LP ++R+V++ G V + + L I L E+
Sbjct: 177 VRIQQIQANFHISM-IASKSFLP-----GSNERLVELQGTVNDLYDTLRVISRCLIEDFS 230
Query: 223 RQVISI--------SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
V + + Y + R + P + T + +VG LIG+ GS I
Sbjct: 231 SIVTTSYYIPRGGNTTKYRGTDRRSSSPGISTT--------LYFPNEIVGALIGKNGSRI 282
Query: 275 SRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
+R SGA I + + R GS+ V AK
Sbjct: 283 QGVRKVSGASIGISEEVDGKTEREFTISGSSHAVEKAK 320
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+D RR+ + + + P+ +G +IGK G RIQ +R+ + A+I I++ + ER
Sbjct: 250 GTD--RRSSSPGISTTLYFPNEIVGALIGKNGSRIQGVRKVSGASIGISEEVDGKTEREF 307
Query: 98 IIS 100
IS
Sbjct: 308 TIS 310
>gi|156358556|ref|XP_001624583.1| predicted protein [Nematostella vectensis]
gi|156211373|gb|EDO32483.1| predicted protein [Nematostella vectensis]
Length = 853
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 17/161 (10%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-ERVIIISS 101
R K D R+++P + +G VIG G++I+KI E T +I I R E ++++ I
Sbjct: 70 RPMKEADYSIRMLIPCKMVGAVIGTSGNKIKKITEATNTSIDIHRKEDRREVDKLVTIRG 129
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
D NA QI L+ ++ D+N +++V +RL+I S AG +IG
Sbjct: 130 S-----PQDCSNANMQIHQLMREETDANLRSNEVE--------MRLVIHDSHAGRIIGRK 176
Query: 162 GQNIEKLRNSSGATIVILAPN---QLPLCASAHESDRVVQI 199
G N++ + + +GA+ + ++ N ++ + + DR+V I
Sbjct: 177 GNNLKSVMDETGASSIKVSGNTGDRMGHSSMLNPGDRIVSI 217
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
A +IR+LI G +IG SG I+K+ ++ +I I E D++V I
Sbjct: 75 ADYSIRMLIPCKMVGAVIGTSGNKIKKITEATNTSIDIHRKE------DRREVDKLVTIR 128
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
G NA ++I +RE + S + V ++I +
Sbjct: 129 GSPQDCSNANMQIHQLMREETDANLRS----------------------NEVEMRLVIHD 166
Query: 261 SLVGGLIGRCGSNISRIRNESGA-MIKVYGGKGEQ 294
S G +IGR G+N+ + +E+GA IKV G G++
Sbjct: 167 SHAGRIIGRKGNNLKSVMDETGASSIKVSGNTGDR 201
>gi|121710626|ref|XP_001272929.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
gi|119401079|gb|EAW11503.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
Length = 362
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 139/346 (40%), Gaps = 75/346 (21%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
++G+++ + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 25 DEGDMDITPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP 84
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IR 146
+RV+ ++ + A +A +L+ A ++ G + N +R
Sbjct: 85 GVHDRVLTVTGP-----LQGTARAYALVAKGLLEG------APQMGMGGIVNNNGTHPVR 133
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 134 LLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 187
Query: 207 LNALVEIGNQLRENPPRQVISI----------------------SPAYN---YSAIRPAQ 241
A+ EIG L ++ R +I S YN Y+
Sbjct: 188 EKAVWEIGKCLIDDWQRGTGTILYNPAVRASVGTGSSINTNTTASNGYNSRPYNRTGNGA 247
Query: 242 PFVEPTSADYV-----------------------TFEMLISESLVGGLIGRCGSNISRIR 278
F + SA Y T + I +VG +IGR GS I+ IR
Sbjct: 248 DFSDGQSAGYSRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGSKITEIR 307
Query: 279 NESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
SGA I + E R GSAQ A ++ +Y L
Sbjct: 308 RSSGARISIAKAPHDETGERMFTIMGSAQ----ANEKALYLLYENL 349
>gi|240281620|gb|EER45123.1| KH domain RNA-binding protein [Ajellomyces capsulatus H143]
Length = 275
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 22/193 (11%)
Query: 30 RREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R E GE EG AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RTEQGEPEGPPKTDEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 82
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---- 144
+ +RV+ ++ + A +A +L+ A ++ G VA+N
Sbjct: 83 VQGVHDRVLTVTGP-----LQGTAKAYAIVAKGLLEG------APQLGMGGVASNNGTHP 131
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 VRLLISHNQMGTIIGRQGLKIKYIQDASGVRMVAQK-EMLP-----QSTERIVEVQGTPE 185
Query: 205 AVLNALVEIGNQL 217
+ A+ EIG L
Sbjct: 186 GIEKAVWEIGKCL 198
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R +++ +AG +IG +G+N+ LR+ +G + + H DRV+ ++G +
Sbjct: 45 TLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK-----VVQGVH--DRVLTVTGPL 97
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A + L E P+ + + + + P + +LIS + +
Sbjct: 98 QGTAKAYAIVAKGLLEGAPQ--LGMGGVASNNGTHPVR--------------LLISHNQM 141
Query: 264 GGLIGRCGSNISRIRNESG 282
G +IGR G I I++ SG
Sbjct: 142 GTIIGRQGLKIKYIQDASG 160
>gi|440901500|gb|ELR52431.1| Insulin-like growth factor 2 mRNA-binding protein 3 [Bos grunniens
mutus]
Length = 600
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 45/271 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSAI---RPAQPFVEPTSA-------DYVTFE---------M 256
+ S++ P N +A+ P PTS Y FE +
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAITPPYPQFEQQSETETVHL 411
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKV 287
I VG +IG+ G +I ++ +GA IK+
Sbjct: 412 FIPALSVGAIIGKQGQHIKQLSRFAGASIKI 442
>gi|409051686|gb|EKM61162.1| hypothetical protein PHACADRAFT_247591 [Phanerochaete carnosa
HHB-10118-sp]
Length = 326
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 36/265 (13%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A ++ + R +V ++ G +IGK G + ++RE T ++ I ERV+
Sbjct: 23 AGSEVLTLRSLVSTKDAGVIIGKAGKNVAELREATAVKAGVSKVIPGVHERVL------- 75
Query: 105 DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
V E + A ++ + +++ + + ++IRLLI+ + G +IG SG
Sbjct: 76 -TVTGSVEGVAKAYAMIVNQLSSTSATSPVSPTPSSSQSSIRLLISHNLMGSVIGRSGLK 134
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I+ +++SSGA + LP ++R+V++ G ++ A+ +IG L E+ R
Sbjct: 135 IKAIQDSSGARM-FAQKEMLP-----QSTERIVEVHGSAESIGRAIEDIGRALLEDWDRA 188
Query: 225 VISI----SPAYNYSAIRPAQ------------------PFVEPTSADYVTFEMLISESL 262
++ A S RP Q ++ T + I +
Sbjct: 189 TGTVYFHPGAADERSGRRPGQQSRRSNGDAPRDRGSPSPSSPSAQPSNLRTQNISIPSDM 248
Query: 263 VGGLIGRCGSNISRIRNESGAMIKV 287
VG +IGR G+ I+ IR SG+ I +
Sbjct: 249 VGCIIGRNGTKITEIRRLSGSKISI 273
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 31/195 (15%)
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
AL+ D S + A V T+R L++ AG +IG +G+N+ +LR AT V
Sbjct: 7 ALLENADQPESRSPSPAGSEVL--TLRSLVSTKDAGVIIGKAGKNVAELRE---ATAVKA 61
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
+++ HE RV+ ++G V V A I NQL +S +P+ + S+IR
Sbjct: 62 GVSKV--IPGVHE--RVLTVTGSVEGVAKAYAMIVNQLSSTSATSPVSPTPSSSQSSIR- 116
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK---GEQKH 296
+LIS +L+G +IGR G I I++ SGA +++ K +
Sbjct: 117 ----------------LLISHNLMGSVIGRSGLKIKAIQDSSGA--RMFAQKEMLPQSTE 158
Query: 297 RHIQFGGSAQQVALA 311
R ++ GSA+ + A
Sbjct: 159 RIVEVHGSAESIGRA 173
>gi|388854780|emb|CCF51673.1| related to PBP2-PAB1 binding protein [Ustilago hordei]
Length = 446
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 64/285 (22%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
+A + R ++ + +IGK G I +IR+++ A + I++ I + ER++
Sbjct: 135 TQATQISMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGNPERIL------- 187
Query: 105 DNVVSDAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSG 162
VS +A+ + LI++ +D+ + S + V TIR ++ S+ G +IG G
Sbjct: 188 --TVSGPLDAVSKAFGLIVRRINDEPFDQPSVPGSKSV---TIRFIVPNSRMGSVIGKQG 242
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++++ +SGA L + L S ++RV+ ISG AV A+ +G L E+
Sbjct: 243 SKIKEIQEASGAR---LTAGEAMLPGS---TERVLSISGVADAVHIAVYYVGTILLEHQD 296
Query: 223 RQVISISPAYNYSAIRPA--------------QPF------------------------- 243
R ++ AY +A P+ QPF
Sbjct: 297 RNANNL--AYRPTAGGPSTRPPAPANPYAAAQQPFGYGAHAPPFAGAAAPAVGAGAGAPQ 354
Query: 244 VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+ P S T ++ I LVG +IG+ GS I+ IR+ S + IK+
Sbjct: 355 LPPGSQ---TQQIFIPNDLVGCIIGKGGSKINEIRSMSASQIKIM 396
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 57/214 (26%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDND 105
++ V R IVP+ ++G VIGK+G +I++I+E + A + +A + ERV+ IS
Sbjct: 220 SKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARLTAGEAMLPGSTERVLSISG---- 275
Query: 106 NVVSDAEN-ALQQIAALIL--KDDDSNSEASKVAAGHVA--------------------- 141
V+DA + A+ + ++L +D ++N+ A + AG +
Sbjct: 276 --VADAVHIAVYYVGTILLEHQDRNANNLAYRPTAGGPSTRPPAPANPYAAAQQPFGYGA 333
Query: 142 -------------------------ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
+ T ++ I GC+IG G I ++R+ S + I
Sbjct: 334 HAPPFAGAAAPAVGAGAGAPQLPPGSQTQQIFIPNDLVGCIIGKGGSKINEIRSMSASQI 393
Query: 177 VILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
I+ P + A ++R+V I+G P + A+
Sbjct: 394 KIMEPGAG-IAAGGGGNERLVTITGPPPNIQMAV 426
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 42/164 (25%)
Query: 126 DDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI--LAPNQ 183
D S ++A+++ ++R LI S A +IG SG++I ++R+ S A + I + P
Sbjct: 131 DSSETQATQI--------SMRTLIVTSDASIIIGKSGKHINEIRDKSNARLNISEIIPGN 182
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPF 243
+R++ +SG + AV A I ++ + +PF
Sbjct: 183 ---------PERILTVSGPLDAVSKAFGLIVRRIND---------------------EPF 212
Query: 244 VEPT--SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMI 285
+P+ + VT ++ S +G +IG+ GS I I+ SGA +
Sbjct: 213 DQPSVPGSKSVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARL 256
>gi|148689196|gb|EDL21143.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689197|gb|EDL21144.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689198|gb|EDL21145.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
Length = 244
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 100/201 (49%), Gaps = 22/201 (10%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVA--ANTIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+R ++GA + + A + LP + ++R V +SG A++ + +I + E+ P +S
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILEHHP---VS 177
Query: 228 ISPAYNYSAIRPAQPFVEPTS 248
P Y F+ P S
Sbjct: 178 SEPLPRYCPPLGQPGFLCPGS 198
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
AV +A+ I +L E+ + +PA S RP VT ++I S
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGSVSRPP-----------VTLRLVIPASQC 113
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR +GA ++V G
Sbjct: 114 GSLIGKAGTKIKEIRETTGAQVQVAG 139
>gi|109042328|ref|XP_001095336.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 5 [Macaca mulatta]
gi|402860699|ref|XP_003894760.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Papio anubis]
Length = 599
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGT--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++++ P N SA+
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 379
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 380 VLSPPAGPRGAPPAAPYHPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEVVNLFIPTQ 437
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 468
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEVVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|258566349|ref|XP_002583919.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
gi|237907620|gb|EEP82021.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
Length = 366
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 130/331 (39%), Gaps = 75/331 (22%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 44 AQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 100
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMS 161
+ A +A +L+ A +V G + N +RLLI+ +Q G +IG
Sbjct: 101 --LQGTAKAYGMVAKSLLEG------APQVGMGGIIQNNGTHPVRLLISHNQMGTIIGRQ 152
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 153 GLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKAVWEIGKCLIDDW 206
Query: 222 PRQVISI----------------------SPAY--------------------------N 233
R ++ +P Y N
Sbjct: 207 QRGTGTVLYNPAVRANVGGGQMNSSFLGPNPNYGGRSYNRTGNGADFSDQPSSGYNRRHN 266
Query: 234 YSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV-YGGKG 292
A P V + T + I +VG +IGR GS IS IR SGA I +
Sbjct: 267 SDAPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRSSGARISIAKASHD 326
Query: 293 EQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
E R GSAQ A ++ +Y L
Sbjct: 327 ETGERMFTIMGSAQ----ANEKALYLLYENL 353
>gi|160333253|ref|NP_001103813.1| P-element somatic inhibitor [Bombyx mori]
gi|159031799|dbj|BAF91871.1| Bombyx homolog of P-element somatic inhibitor [Bombyx mori]
Length = 703
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 139/310 (44%), Gaps = 32/310 (10%)
Query: 25 VSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84
V G R G GS P Q + I VP R +G +IG+ G +I +++ E+ I+
Sbjct: 77 VGGGGRMIAGAGPGSGPTNLLPDQSINEYIRVPDRMVGLIIGRGGEQITRLQAESGCKIQ 136
Query: 85 IADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD------DDSNSEASKVAAG 138
+A + +R+ ++ + + + A+ + QI ++ D S + G
Sbjct: 137 MAPPTDGNPDRLCTLTG--SRDAIQRAKELVNQIVNHRGRENAPQHQDPSEPGMNMSRPG 194
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL--APNQLPLCASAHESDRV 196
A I +I G++ G +IG +G+ I++L+ +GA +V++ PN+ S ++
Sbjct: 195 PNAMEEI--MIPGAKVGLIIGKNGKTIKQLQEQTGAKMVVIQDGPNE----NSFKPQEKP 248
Query: 197 VQISGDVPAVLNA----LVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV 252
++ISGD V +A + N+ + PPR Y P TSA
Sbjct: 249 LRISGDPAKVEHAKQLVFELLANKDMQEPPRPYDD-----GYGGSDPGNGLAT-TSA--- 299
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQF-GGSAQQVALA 311
E+L+ + +G +IG G I +I+ ++G ++ E+ + + G Q+ A
Sbjct: 300 --EVLVPKVAIGVVIGHKGKMIKKIQADTGCRVQFNQEHDEEPGDKLCYLQGKPHQLDQA 357
Query: 312 KQRVDEYIYS 321
+Q +++ I S
Sbjct: 358 RQMIEDLISS 367
>gi|307211366|gb|EFN87498.1| Far upstream element-binding protein 1 [Harpegnathos saltator]
Length = 751
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 57/294 (19%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
I VP + +G +IG+ G +I +++ ET I++A ERV ++ +
Sbjct: 107 IRVPDKMVGLIIGRGGEQITRLQSETGCKIQMAPESGGLPERVCTLTG---------SRE 157
Query: 114 ALQQIAALILK--DDDSNSEASKVAAGHVAANT-------IRLLIAGSQAGCLIGMSGQN 164
A+ + L+L + S SE + ++I G + G +IG G+
Sbjct: 158 AVNRAKELVLSIVNQRSRSEGIGDMNMGGGGGGMMGHPGFVEIMIPGPKVGLIIGKGGET 217
Query: 165 IEKLRNSSGATIVIL--APNQLPLCASAHESDRVVQISGDVPAVLNA------------- 209
I++L+ SGA +V++ P+Q E ++ ++I+GD V +A
Sbjct: 218 IKQLQEKSGAKMVVIQEGPSQ--------EQEKPLRITGDPQKVEHAKQLVYELIAEKEM 269
Query: 210 -LVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIG 268
+ G + E P + +N+ P + D V E+L+ + VG +IG
Sbjct: 270 QMFHRGGRGSERPGN--YTNDNGFNHG----------PANNDGV--EVLVPRAAVGVVIG 315
Query: 269 RCGSNISRIRNESGAMIKVYGGKGE-QKHRHIQFGGSAQQVALAKQRVDEYIYS 321
+ G I +I+ ESGA ++ G+ + R G Q V A+QR+ E I S
Sbjct: 316 KGGDMIKKIQAESGAKVQFQQGREDGPGDRKCLLSGKHQAVEQARQRIQELIDS 369
>gi|325087770|gb|EGC41080.1| KH domain RNA-binding protein [Ajellomyces capsulatus H88]
Length = 321
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 123/306 (40%), Gaps = 71/306 (23%)
Query: 30 RREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
R E GE EG AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 23 RTEQGEPEGPPKTDEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 82
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT---- 144
+ +RV+ ++ + A +A +L+ A ++ G VA+N
Sbjct: 83 VQGVHDRVLTVTGP-----LQGTAKAYAIVAKGLLEG------APQLGMGGVASNNGTHP 131
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G
Sbjct: 132 VRLLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPE 185
Query: 205 AVLNALVEIGNQLRENPPRQVISI--SPA---------------------------YNYS 235
+ A+ EIG L ++ R ++ +PA YN +
Sbjct: 186 GIEKAVWEIGKCLIDDWQRGTGTVLYNPAVRASVGGGPPNNSLGSGASTGGYGGRSYNRT 245
Query: 236 --------------------AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
A P V + T + I +VG +IGR GS IS
Sbjct: 246 GNGADFSDQTGGYNRRSNSDATSRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKIS 305
Query: 276 RIRNES 281
IR S
Sbjct: 306 EIRRSS 311
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R +++ +AG +IG +G+N+ LR+ +G + + H DRV+ ++G +
Sbjct: 45 TLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK-----VVQGVH--DRVLTVTGPL 97
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A + L E P+ + + + + P + +LIS + +
Sbjct: 98 QGTAKAYAIVAKGLLEGAPQ--LGMGGVASNNGTHPVR--------------LLISHNQM 141
Query: 264 GGLIGRCGSNISRIRNESG 282
G +IGR G I I++ SG
Sbjct: 142 GTIIGRQGLKIKYIQDASG 160
>gi|440905354|gb|ELR55741.1| Heterogeneous nuclear ribonucleoprotein K [Bos grunniens mutus]
Length = 464
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C + +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQ----ECCPQS--TDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++I E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIHHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|355733298|gb|AES10985.1| poly binding protein 2 [Mustela putorius furo]
Length = 148
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G +IG G++++K+R SGA I I + + +R++ ++G
Sbjct: 27 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINI---------SEGNCPERIITLAGPT 77
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A RP VT +++ S
Sbjct: 78 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASRPP-----------VTLRLVVPASQC 121
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 122 GSLIGKGGCKIKEIRESTGAQVQVAG 147
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 15/128 (11%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R+++ +++G +IGK+G ++K+REE+ A I I++ ER+I ++
Sbjct: 28 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---------P 76
Query: 112 ENALQQIAALI---LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
NA+ + A+I L++D S+S + AA T+RL++ SQ G LIG G I+++
Sbjct: 77 TNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPV-TLRLVVPASQCGSLIGKGGCKIKEI 135
Query: 169 RNSSGATI 176
R S+GA +
Sbjct: 136 RESTGAQV 143
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
V R++VP+ Q G +IGK G +I++IRE T A +++A
Sbjct: 110 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 146
>gi|431921619|gb|ELK18971.1| Poly(rC)-binding protein 2 [Pteropus alecto]
Length = 446
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 89/163 (54%), Gaps = 21/163 (12%)
Query: 66 GKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI--- 122
GK+G ++K+REE+ A I I++ ER+I ++ N A+ + A+I
Sbjct: 22 GKKGESVKKMREESGARINISEG--NCPERIITLAGPTN---------AIFKAFAMIIDK 70
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
L++D S+S + AA T+RL++ SQ G LIG G I+++R S+GA + + A +
Sbjct: 71 LEEDISSSMTNSTAASKPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGD 128
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV 225
LP + ++R + I+G +++ + +I + E+PP+ V
Sbjct: 129 MLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGV 166
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 33/146 (22%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIRLL+ G + G++++K+R SGA I I + + +R++ ++G
Sbjct: 15 TIRLLMHGKK--------GESVKKMREESGARINI---------SEGNCPERIITLAGPT 57
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
A+ A I ++L E+ IS S + +A +P VT +++ S
Sbjct: 58 NAIFKAFAMIIDKLEED-----ISSSMTNSTAASKPP-----------VTLRLVVPASQC 101
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 102 GSLIGKGGCKIKEIRESTGAQVQVAG 127
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
A V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 85 ASKPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 141
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 248 SADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ 307
SA + E+ I L+G +IGR G+ I+ IR SGA IK+ R + GSA
Sbjct: 260 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 319
Query: 308 VALAKQRVD 316
++LA+ ++
Sbjct: 320 ISLAQYLIN 328
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 259 ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 314
>gi|170087462|ref|XP_001874954.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650154|gb|EDR14395.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 339
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 18/241 (7%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
++ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ NV
Sbjct: 56 NIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMVSESIPGNPERIL--------NVS 107
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
+ + ++ + +D + V A TI+ +I S+ G +IG G I+++
Sbjct: 108 GPLDAVSKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFMIPNSRMGSVIGKQGSKIKEI 165
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
+++SGA + + LP ++RV+ ++G A+ A IGN L E R S
Sbjct: 166 QDASGARLN-ASEGMLP-----GSTERVLSVAGVADAIHIATYYIGNILIEAQERMPSSA 219
Query: 229 SPAYNYS--AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
+ Y S A P P P T ++ I LVG +IG+ GS I+ IR+ S + IK
Sbjct: 220 NSTYRPSRYASNPYPPPHNPPPQQLQTQQIYIPNDLVGCIIGKGGSKINEIRHMSASQIK 279
Query: 287 V 287
+
Sbjct: 280 I 280
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 30/160 (18%)
Query: 133 SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE 192
S AA A +R LI A +IG G ++ ++R SGA +++ +P
Sbjct: 47 SSTAAPPSANIHMRCLIVTQDASIIIGKGGSHVNEIREKSGARVMV--SESIP-----GN 99
Query: 193 SDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT--SAD 250
+R++ +SG + AV A I ++ + +PF P+ +
Sbjct: 100 PERILNVSGPLDAVSKAFGLIVRRIND---------------------EPFDVPSVPGSR 138
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG 290
VT + +I S +G +IG+ GS I I++ SGA + G
Sbjct: 139 AVTIKFMIPNSRMGSVIGKQGSKIKEIQDASGARLNASEG 178
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERV---------III 99
V + ++P+ ++G VIGK+G +I++I++ + A + ++ + ERV I I
Sbjct: 140 VTIKFMIPNSRMGSVIGKQGSKIKEIQDASGARLNASEGMLPGSTERVLSVAGVADAIHI 199
Query: 100 SSKDNDNVVSDAENALQQIAALILKDD--DSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
++ N++ +A+ + A + SN T ++ I GC+
Sbjct: 200 ATYYIGNILIEAQERMPSSANSTYRPSRYASNPYPPPHNPPPQQLQTQQIYIPNDLVGCI 259
Query: 158 IGMSGQNIEKLRNSSGATIVILAP-------NQLPLCASAHESDRVVQISGDVPAVLNAL 210
IG G I ++R+ S + I I+ P N P A E +R+V I+G PA +
Sbjct: 260 IGKGGSKINEIRHMSASQIKIMEPGAVGVGMNGAPAPAGG-EGERLVVITGQ-PANIQMA 317
Query: 211 VEI 213
V++
Sbjct: 318 VQL 320
>gi|426256848|ref|XP_004022049.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Ovis aries]
Length = 466
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PQSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|389748653|gb|EIM89830.1| hypothetical protein STEHIDRAFT_118925 [Stereum hirsutum FP-91666
SS1]
Length = 304
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 119/260 (45%), Gaps = 40/260 (15%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ NV
Sbjct: 1 MRCLIVTQDASIIIGKAGSHVNEIREKSGARVMVSESIPGNPERIL--------NVSGPL 52
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
+ + ++ + +D + V A TI+ +I S+ G +IG G I++++++
Sbjct: 53 DAVSKAFGLIVRRINDEPFDVPSVPGSR--AVTIKFMIPNSRMGSVIGKQGSKIKEIQDA 110
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE------------ 219
SGA + + LP ++RV+ ++G A+ A IGN L E
Sbjct: 111 SGARLN-ASEGMLP-----GSTERVLSVAGVADAIHIATYYIGNILIEAQERMPSAGTAM 164
Query: 220 ---NPPRQVISISPAYNYSAIRP--AQPFVEPTSADYV-------TFEMLISESLVGGLI 267
P + + S Y S+ P + P+V+ T ++ I LVG +I
Sbjct: 165 SSYRPSNRSTTRSTPYVGSSYVPGYSNPYVQTAPPAPGNPPPQIQTQQIYIPNDLVGCII 224
Query: 268 GRCGSNISRIRNESGAMIKV 287
G+ GS I+ IR+ S + IK+
Sbjct: 225 GKGGSKINEIRHMSASQIKI 244
>gi|299029|gb|AAB26047.1| pre-mRNA binding K protein, hnRNP K [Xenopus laevis, Peptide, 396
aa]
Length = 396
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 43/241 (17%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEDEQAFKRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI---LKDDDSNSEASKVAAGHV 140
+ D+ ER++ IS+ + L++I + K +D + E
Sbjct: 74 SVPDSSG--PERILSISAD-----IETIGEILKKIIPTLEEHFKGNDFDCE--------- 117
Query: 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
+RLLI S AG +IG+ G I++LR + TI + C H +DRVV I
Sbjct: 118 ----LRLLIHQSLAGGIIGVKGAKIKELREKTQTTIKLFQE-----CC-PHSTDRVVLIG 167
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQP-FVEPTSADYVTFEMLIS 259
G V+ + I + +IS SP S +P P F E + DY F M+
Sbjct: 168 GRPDRVVECIKVILD---------LISESPVKGRS--QPYDPNFYE--TYDYGGFTMMFD 214
Query: 260 E 260
+
Sbjct: 215 D 215
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
++ +P G +IGK G RI++IR E+ A+IKI + + ++R+I I+
Sbjct: 321 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITIT 368
>gi|268567874|ref|XP_002640100.1| Hypothetical protein CBG12588 [Caenorhabditis briggsae]
Length = 398
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 34/217 (15%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVL---------FRIIVPSRQIGKVIGKEGHRIQKIREE 78
KR E+ E + S +R K R++V S+ G +IGK G I+++R E
Sbjct: 19 KREHENDEGDRSSRHKRQKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAE 78
Query: 79 TKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG 138
A +++ D+ ERV V +D + L + ++ + +D+ SE
Sbjct: 79 FNAHVQVPDS--NTPERVC--------TVTADEKTVLNILKDVLPRLEDNFSERDPCE-- 126
Query: 139 HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQ 198
+R+LI S AG LIG +G I++LR A + I CA +DRV+
Sbjct: 127 ------VRVLIHQSHAGALIGRNGTKIKELREKCSARLKIFT-----GCAPG-STDRVLI 174
Query: 199 ISGDVPAVLNALVEIGNQLRENPPR-QVISISPAYNY 234
SG+ VL + E+ +L+E P + P+++Y
Sbjct: 175 TSGEQKNVLAIIEEVMKELKEIPIKGSATPYLPSFHY 211
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 34/146 (23%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 102
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
VLN L ++ +L +N F E D +LI +S G
Sbjct: 103 TVLNILKDVLPRLEDN----------------------FSE---RDPCEVRVLIHQSHAG 137
Query: 265 GLIGRCGSNISRIRNESGAMIKVYGG 290
LIGR G+ I +R + A +K++ G
Sbjct: 138 ALIGRNGTKIKELREKCSARLKIFTG 163
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 114/286 (39%), Gaps = 37/286 (12%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R+++ G +IG+ G +I+++RE+ A +KI A ++I+S + NV++ E
Sbjct: 128 RVLIHQSHAGALIGRNGTKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQKNVLAIIE 187
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
++++ + +K S + + H + I G G + G QN
Sbjct: 188 EVMKELKEIPIK----GSATPYLPSFHYDPSNISEY--GGFPGNVSGGGPQNNRGPAPPR 241
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP-PRQVISISPA 231
G P + R + +GD +Q R P P Q +P
Sbjct: 242 GGQGPPGGPRSYGGAITPGGGPRSFE-AGDF-----------HQFRGGPVPGQYSMNAPG 289
Query: 232 YNYSAIRPAQPFVEPTSAD----------YVTFEMLISESLVGGLIGRCGSNISRIRNES 281
Y P F P +A T ++ I L G +IGR G I+RIR ES
Sbjct: 290 YAQGP--PQGQFGAPANAGYGYGPGGGGPVTTAQVTIPSDLGGTIIGRGGERIARIRQES 347
Query: 282 GAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQQA 327
GA I + G Q R I G+ QQ+ A +Y+ Q ++ +
Sbjct: 348 GAQITLEPSNG-QPERIITIKGTEQQIHSA-----QYLLQQCVRNS 387
>gi|291358560|gb|ADD96765.1| heterogeneous nuclear ribonuclear protein K [Capra hircus]
Length = 441
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PQSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 366 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 423
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 424 NAQYLLQ 430
>gi|209151855|gb|ACI33086.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 433
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
D +GKR ED E E + + R + V R+++ S+ G VIGK G I+ +R + A++
Sbjct: 18 DTNGKRPAEDMEEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ +S+ D D + E L+ I L E + G
Sbjct: 78 SVPDSSG--PERILSVSA-DIDTI---GEILLKIIPTL---------EEYQHYNGIDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + C + +DRVV + G
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQ----ECCPQS--TDRVVLVGGKP 176
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + + E P + +P P + DY F M+ E
Sbjct: 177 DRVVECIKVILDLVSEAPIK-----------GRAQPYDPNFYDETYDYGGFTMIYEE 222
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 33/145 (22%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ +S D+
Sbjct: 46 LRVLLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSVSADID 96
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADY-VTFEMLISESLV 263
+ L++I + ++ +Y+ I D+ +LI +SL
Sbjct: 97 TIGEILLKI-----------IPTLEEYQHYNGI------------DFDCELRLLIHQSLA 133
Query: 264 GGLIGRCGSNISRIRNESGAMIKVY 288
GG+IG G+ I +R + IK++
Sbjct: 134 GGIIGVKGAKIKELRENTQTTIKLF 158
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 358 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITINGTQDQIQNA 417
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 418 QYLLQNSVKQYSGRFF 433
>gi|391338140|ref|XP_003743419.1| PREDICTED: far upstream element-binding protein 3-like, partial
[Metaseiulus occidentalis]
Length = 502
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 141/321 (43%), Gaps = 58/321 (18%)
Query: 38 GSDPKRRAKAQDVLFRI-------------IVPSRQIGKVIGKEGHRIQKIREETKATIK 84
G +PK+ A +Q V+ + VP + +G +IG++G +I +++ ET ++
Sbjct: 68 GPEPKKMAASQTVIPGVQPPMPSNSVSEEWSVPDKMVGLIIGRDGKQISRLQHETSCKVQ 127
Query: 85 IADAIARHEER-VIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
++ ER ++I +K E A + I+ALI + +++ +A + G
Sbjct: 128 LSSESNGTPERPCVLIGTKQA------VEKAKEMISALISRGQETSHKAGSMNGGPGQGE 181
Query: 144 TIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD 202
+ + S+AG +IG +G+ I L++ +G +V+L N ++ +++ ++I+G+
Sbjct: 182 IVEDMPCPASKAGLVIGRNGETIRNLQSRAGVKMVLLQDNP----GNSPNAEKPIRITGE 237
Query: 203 VPAVLNALVEIGNQLRENPPRQVISIS-------------------PAYNYSAIRPAQPF 243
V +L + R +IS S P S P
Sbjct: 238 PHKV---------ELAKKMIRDLISGSLQNGGGGGRFGGSHMDRGFPGVGGS----MGPT 284
Query: 244 VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE-QKHRHIQFG 302
P + ++L+ + VG +IG+ G I RI++E+GA ++ G E R
Sbjct: 285 PVPGEPGSMQEQLLVPQQAVGVVIGKHGEMIKRIQHETGARVQFQGTPDETHPDRICVIT 344
Query: 303 GSAQQVALAKQRVDEYIYSQL 323
G + QV A ++ + I S L
Sbjct: 345 GQSNQVLGACSKISDLITSVL 365
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKI-ADAIARHEERVIIISSKDNDNVVSDA 111
+++VP + +G VIGK G I++I+ ET A ++ H +R+ +I+ + N V+
Sbjct: 296 QLLVPQQAVGVVIGKHGEMIKRIQHETGARVQFQGTPDETHPDRICVITGQSN-QVLGAC 354
Query: 112 ENALQQIAALILKDDD 127
I +++ +DD+
Sbjct: 355 SKISDLITSVLQRDDE 370
>gi|308499839|ref|XP_003112105.1| hypothetical protein CRE_29640 [Caenorhabditis remanei]
gi|308268586|gb|EFP12539.1| hypothetical protein CRE_29640 [Caenorhabditis remanei]
Length = 721
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 25/183 (13%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
R++V S+ G +IGK G I+++R E A +++ D+ ERV +++ D V++
Sbjct: 375 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTA-DEKTVLNILR 431
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ L + L+D+ S + +V R+LI S AG LIG +G I++LR
Sbjct: 432 DVLPR-----LEDNFSERDPCEV----------RMLIHQSHAGALIGRNGTKIKELREKC 476
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR-QVISISPA 231
A + I CA +DRV+ SG+ VL + E+ +L+E P + P+
Sbjct: 477 SARLKIFTG-----CAPG-STDRVLITSGEQKNVLAIIEEVMKELKEIPIKGSSTPYLPS 530
Query: 232 YNY 234
++Y
Sbjct: 531 FHY 533
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 34/146 (23%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+RLL++ AG +IG G+NI++LR A + Q+P ++ +RV ++ D
Sbjct: 374 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHV------QVP---DSNTPERVCTVTADEK 424
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
VLN L ++ +L +N +S P + MLI +S G
Sbjct: 425 TVLNILRDVLPRLEDN-------------FSERDPCE------------VRMLIHQSHAG 459
Query: 265 GLIGRCGSNISRIRNESGAMIKVYGG 290
LIGR G+ I +R + A +K++ G
Sbjct: 460 ALIGRNGTKIKELREKCSARLKIFTG 485
>gi|410911650|ref|XP_003969303.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Takifugu rubripes]
Length = 581
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 135/302 (44%), Gaps = 48/302 (15%)
Query: 44 RAKAQ-DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIIS 100
R K Q D+ R++VP++ +G +IGK+G I+ + ++T + I I + E+ + I S
Sbjct: 188 RPKVQSDIPLRMLVPTQFVGAIIGKQGDTIRNLTKQTHSKIDIHRKENAGAAEKPITIHS 247
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+ + + NA + I ++ K+ ++ +++L+ + G LIG
Sbjct: 248 TPEGSS------NACRTIMEIMQKEAIDTKFTEEIP--------LKILVHNNFVGRLIGK 293
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G+N++K+ +G I I + L + + +R + + G + A E+ ++RE
Sbjct: 294 EGRNLKKIEQDTGTKITISSLQDL----TVYNPERTITVKGAIENCGRAEEEVMKKIREA 349
Query: 221 PPRQVISIS------PAYNYSAI----------RPAQPFVEPTSA----------DYVTF 254
V +++ P N +A+ P+ + P A + T
Sbjct: 350 YESDVAAMNLQSNLIPGLNLNALGLFPSGTPGMGPSMSSLPPPGAHGGYSFGGNPESETV 409
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG-EQKHRHIQFGGSAQQVALAKQ 313
+ I VG +IG+ G +I ++ + +GA IK+ +G + KHR + G + A+
Sbjct: 410 HLFIPTLAVGAIIGKQGQHIKQLSHFAGASIKIAPAEGMDPKHRMVIIVGPPEAQFKAQC 469
Query: 314 RV 315
R+
Sbjct: 470 RI 471
>gi|431838851|gb|ELK00780.1| Insulin-like growth factor 2 mRNA-binding protein 2 [Pteropus
alecto]
Length = 820
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 130/312 (41%), Gaps = 70/312 (22%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G + A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 398 REQGHAPGGSSQ--ARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 455
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + A + I ++ K+ D A ++ +++L
Sbjct: 456 SGAAEKPVTIHATPEG------TSEACRMILEIMQKEADETKLAEEIP--------LKIL 501
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A +
Sbjct: 502 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAS 557
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYN----------------------------- 233
A +EI +LRE +++++ P N
Sbjct: 558 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGAPPAPPY 617
Query: 234 ---------YSAIRPAQPFVE-PTSADYVTFE---MLISESLVGGLIGRCGSNISRIRNE 280
+S++ P F P Y E + I VG +IG+ G++I ++
Sbjct: 618 HPFATHSGYFSSLYPPHQFSPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARF 677
Query: 281 SGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 678 AGASIKIAPAEG 689
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 41 PKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIII 99
P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER++II
Sbjct: 640 PHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVII 699
Query: 100 SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG 159
+ A +I + +++ N + H+ + S AG +IG
Sbjct: 700 TGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGRVIG 747
Query: 160 MSGQNIEKLRNSSGATIVI 178
G+ + +L+N + A +++
Sbjct: 748 KGGKTVNELQNLTSAEVIV 766
>gi|355695692|gb|AES00095.1| insulin-like growth factor 2 mRNA binding protein 2 [Mustela
putorius furo]
Length = 194
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 22/191 (11%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 15 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 72
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 73 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 118
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A N
Sbjct: 119 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAN 174
Query: 209 ALVEIGNQLRE 219
A VEI +LRE
Sbjct: 175 AEVEIMKKLRE 185
>gi|340959534|gb|EGS20715.1| hypothetical protein CTHT_0025510 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 373
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 117/292 (40%), Gaps = 51/292 (17%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DGE + A+ Q + R +V S++ G +IGK G + +REET ++ +
Sbjct: 35 DGEPAPKTDEEYAQTQ-LTLRALVSSKEAGVIIGKGGQNVANLREETGVKAGVSKVVQGV 93
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGS 152
+RV+ I+ A +A +L+ + S V H + I+LLI+ +
Sbjct: 94 YDRVLTITGG-----CDAVSRAYAVVARALLEGAPAVSMGGVVQ--HNGTHPIKLLISHN 146
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
Q G +IG GQ I+ +++ SG +V LP ++R+V++ G + A+ E
Sbjct: 147 QMGTIIGRQGQRIKYIQDVSGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIQRAVWE 200
Query: 213 IGNQLRENPPR-------------QVISISPAYNYSAIRPAQ------------------ 241
I L ++ R QV Y +R
Sbjct: 201 ICKCLVDDWQRGTGTVFYNPAVRTQVGGFHDRYGSRVLRTGNGADFSNGSRSYGRRSDSE 260
Query: 242 ------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P + + T + I +VG +IGR GS IS IR SGA I +
Sbjct: 261 GGPRGPPTHDENGEEIQTQNISIPADMVGCIIGRGGSKISEIRKTSGARISI 312
>gi|345320258|ref|XP_001518426.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein
1-like, partial [Ornithorhynchus anatinus]
Length = 464
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 46/261 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE-----ERVII 98
+ +A DV R++VP++ +G +IGKEG I+ I ++T++ I + R E E+ I
Sbjct: 243 KQQAADVPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKID----VHRKENSGAAEKAIS 298
Query: 99 ISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
I S +A + I ++ K+ A +V +++L + G LI
Sbjct: 299 IQSSPG-----GCSSACRMILEIMHKEAKDTKTADEVP--------LKVLAHNNFVGRLI 345
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G+N++K+ + I I + L L + +R + + G + A EI ++R
Sbjct: 346 GKEGRNLKKVEQDTDTKITISSLQDLTL----YNPERTITVKGSIENCSRAEQEIMKKVR 401
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
E V ++SP P Q V ++ I VG +IG+ G +I ++
Sbjct: 402 EAYENDVAAMSP--------PEQEMV----------QVFIPAQAVGAIIGKKGQHIKQLS 443
Query: 279 NESGAMIKV--YGGKGEQKHR 297
+ A IKV G GE R
Sbjct: 444 RFASASIKVTSVGEGGEHPLR 464
>gi|392513715|ref|NP_001254774.1| heterogeneous nuclear ribonucleoprotein K [Sus scrofa]
Length = 463
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PQSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + +
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--TQDQIQ 445
Query: 110 DAENALQ 116
+A+ LQ
Sbjct: 446 NAQYLLQ 452
>gi|321477777|gb|EFX88735.1| hypothetical protein DAPPUDRAFT_311062 [Daphnia pulex]
Length = 727
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 127/273 (46%), Gaps = 55/273 (20%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
+ VP + +G +IG+ G +I +++ E+ A I++A A +R I+ +
Sbjct: 123 VAVPDKMVGLIIGRGGEQISRLQAESGAKIQMAPDSAGLPDRTCTITG---------SRE 173
Query: 114 ALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG 173
A+ + LI ++ + AG + ++ ++I G + G +IG G+ I++L+ SG
Sbjct: 174 AIGRARELI--NNIVQTRGGPRDAGPPSVESL-VMIPGPKVGLIIGKGGETIKQLQERSG 230
Query: 174 ATIVIL--APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPA 231
+V++ P Q E+++ ++I GD V +A +Q++
Sbjct: 231 TRMVVVQDGPQQ--------ENEKPLRIYGDPQKVEHA-------------KQLV----- 264
Query: 232 YNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGK 291
Y+ A + E+ + S VG +IG+ G I +I+NE+GA ++ G+
Sbjct: 265 YDLIAEK--------------EMEVAVPRSAVGVVIGKNGEMIKKIQNETGARVQFQQGR 310
Query: 292 GEQ-KHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
+ + R G+ Q+ A+QR++E I S L
Sbjct: 311 DDNPEERMCALTGTMNQIEDARQRIEELIESVL 343
>gi|77736071|ref|NP_001029734.1| heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|426219903|ref|XP_004004157.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Ovis aries]
gi|426219905|ref|XP_004004158.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ovis aries]
gi|426224282|ref|XP_004006301.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
gi|426256846|ref|XP_004022048.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Ovis aries]
gi|108860777|sp|Q3T0D0.1|HNRPK_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|74354615|gb|AAI02451.1| Heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|296484523|tpg|DAA26638.1| TPA: heterogeneous nuclear ribonucleoprotein K [Bos taurus]
Length = 464
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + C +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PQSTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|255715657|ref|XP_002554110.1| KLTH0E14520p [Lachancea thermotolerans]
gi|332319672|sp|C5DIR2.1|HEK2_LACTC RecName: Full=Heterogeneous nuclear rnp K-like protein 2; AltName:
Full=KH domain-containing protein 1
gi|238935492|emb|CAR23673.1| KLTH0E14520p [Lachancea thermotolerans CBS 6340]
Length = 285
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 117/283 (41%), Gaps = 40/283 (14%)
Query: 48 QDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
QD + R++V ++ ++IG +G IQKIRE +K I I+ +R++ S
Sbjct: 7 QDTVNHRVLVSLKEAARIIGAQGMTIQKIRESSKVKIGISPHERGCSDRILSCSGS---- 62
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAA----------------NTIRLLIA 150
NA+ + ++ +DD S + +RL+++
Sbjct: 63 -AQGVANAIGDVVEVLNQDDSEPETHSYKPLNFILPAPSATEIQDPESVKRIGNLRLIVS 121
Query: 151 GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL 210
SQ +IG G I+ L G V+ + N LP DRVV+I G A+ + L
Sbjct: 122 NSQVSSIIGTQGSRIKSLIEKHGVK-VVASKNFLP-----DSQDRVVEIQGFPGAIASCL 175
Query: 211 VEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRC 270
V+I L P P++ + P + VT ++ I VG L+GR
Sbjct: 176 VDISEILAAEP-------KPSHE----KQYYPHTKSQEEGSVTKDVAIPVEYVGALLGRG 224
Query: 271 GSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQ-VALAK 312
G+ +S +R + + V E+ +R G+ Q V LA+
Sbjct: 225 GNRVSSLRKYTKTKVIVSDEPDEENNRVFTITGNNQNSVKLAE 267
>gi|390335391|ref|XP_003724135.1| PREDICTED: far upstream element-binding protein 3-like isoform 1
[Strongylocentrotus purpuratus]
Length = 695
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 124/266 (46%), Gaps = 34/266 (12%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
VP++ +G +IG++G +I ++ E+ I+IA +R + ++
Sbjct: 128 FFVPNKMVGLIIGRQGQQISSLQSESGCNIQIAPENGISGDRQVTLTG---------TPE 178
Query: 114 ALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG 173
A+ +LIL D N + A G++ T+ +LI ++ G +IG G+ I++L+ +G
Sbjct: 179 AVMHAKSLIL--DIVNKASQNEAEGNM---TVDMLIPATKVGLVIGKGGETIKQLQEQAG 233
Query: 174 ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+V++ + P+ D+ ++ISGD + A + +++ EN S +
Sbjct: 234 VRMVMI--QEGPVATGM---DKPLRISGDSQKIEEAKRLV-SEVMENAKNNDRSSGDNF- 286
Query: 234 YSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE 293
YS P + + P A VG +IGR G I RI+ ++ A ++ G +
Sbjct: 287 YSRGGPHKDVIVPKHA-------------VGMVIGRGGDMIKRIQEQTKARVQFKPGDRD 333
Query: 294 QKHRHIQFGGSAQQVALAKQRVDEYI 319
R GSA+ V++A+ V++ +
Sbjct: 334 APERVALITGSAESVSMAESMVNDLV 359
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 50/226 (22%)
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAA----------GHVAANTIRLLIAGSQAGCLI 158
SDAE A + +A + D+D N+ + ++ G T + G +I
Sbjct: 82 SDAEPATKNLA--MQNDNDFNTFGAALSGMPRAAPANSMGRDGHGTEEFFVPNKMVGLII 139
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA---LVEIGN 215
G GQ I L++ SG I I N + DR V ++G AV++A +++I N
Sbjct: 140 GRQGQQISSLQSESGCNIQIAPENGI-------SGDRQVTLTGTPEAVMHAKSLILDIVN 192
Query: 216 QLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNIS 275
+ +N + +T +MLI + VG +IG+ G I
Sbjct: 193 KASQN--------------------------EAEGNMTVDMLIPATKVGLVIGKGGETIK 226
Query: 276 RIRNESGA-MIKVYGGK-GEQKHRHIQFGGSAQQVALAKQRVDEYI 319
+++ ++G M+ + G + ++ G +Q++ AK+ V E +
Sbjct: 227 QLQEQAGVRMVMIQEGPVATGMDKPLRISGDSQKIEEAKRLVSEVM 272
>gi|348519757|ref|XP_003447396.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Oreochromis niloticus]
Length = 611
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 122/301 (40%), Gaps = 77/301 (25%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R + D R++VP++ +G +IGKEG+ I+ + ++T++ + I + E+ + I S+
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDIHRKENAGAAEKPITIHST 252
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A + I ++ K+ + + +++L S G LIG
Sbjct: 253 PEG------CSAACRMILDIMQKEANETKTTEDIP--------LKILAHNSLVGRLIGKE 298
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I + L + + +R + + G + A A VEI +LRE
Sbjct: 299 GRNLKKIEEDTGTKITISSLQDL----TIYNPERTITVKGSIDACCKAEVEITKKLREAY 354
Query: 222 PRQVISIS------PAYNYSAI----------------RPAQPFVEPTSADYVTF----- 254
+ +I+ P N +A+ R A P V P A Y F
Sbjct: 355 ENDIAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGPRSAVPAVAP--AGYNPFLSHSS 412
Query: 255 ----------------------------EMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
+ I VG LIG+ G +I ++ + +GA IK
Sbjct: 413 HLSGLYGVPPASAIPHQHSQQAPEQEVVYLFIPTQAVGALIGKKGQHIKQLAHFAGASIK 472
Query: 287 V 287
+
Sbjct: 473 I 473
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 21/161 (13%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERVIIISS 101
++A Q+V++ + +P++ +G +IGK+G I+++ A+IKIA A + ER++II+
Sbjct: 432 QQAPEQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITG 490
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+A+ Q LK+++ S +V + + S AG +IG
Sbjct: 491 ------TPEAQFKAQGRIFGKLKEENFFSAKEEVKL------ETHIKVPSSAAGRVIGKG 538
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV-VQISG 201
G+ + +L+N + A +++ P + E+D V V+ISG
Sbjct: 539 GKTVNELQNLTSAEVIV------PRDQTPDENDEVFVKISG 573
>gi|146416151|ref|XP_001484045.1| hypothetical protein PGUG_03426 [Meyerozyma guilliermondii ATCC
6260]
Length = 342
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG+ G I IR+ET I+ ER++ +S + DA
Sbjct: 62 YRVLVSAKEAGCLIGQNGQVIDSIRQETNTKAGISRLQPGSHERILTVS-----GTLDDA 116
Query: 112 ENALQQIA-ALILKDDDSNSEASKVAAGHVA--------ANTIRLLIAGSQAGCLIGMSG 162
AL A AL + ++ S S ++ +RLLI +Q G LIG G
Sbjct: 117 ARALSYFAQALCNANTETFSTYSYFPLKQLSLTPCVEGETTILRLLIPNAQMGTLIGSKG 176
Query: 163 QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++++ + ++ I + + LP ++R+V++ G V + + L I L E+
Sbjct: 177 VRIQQIQANFHISM-IASKSFLP-----GSNERLVELQGTVNDLYDTLRVISRCLIEDFS 230
Query: 223 RQVISI--------SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
V + + Y + R + P + T + +VG LIG+ GS I
Sbjct: 231 SIVTTSYYIPRGGNTTKYRGTDRRSSLPGISTT--------LYFPNEIVGALIGKNGSRI 282
Query: 275 SRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
+R SGA I + + R GS+ V AK
Sbjct: 283 QGVRKVSGASIGISEEVDGKTEREFTISGSSHAVEKAK 320
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVI 97
G+D RR+ + + P+ +G +IGK G RIQ +R+ + A+I I++ + ER
Sbjct: 250 GTD--RRSSLPGISTTLYFPNEIVGALIGKNGSRIQGVRKVSGASIGISEEVDGKTEREF 307
Query: 98 IIS 100
IS
Sbjct: 308 TIS 310
>gi|119195161|ref|XP_001248184.1| hypothetical protein CIMG_01955 [Coccidioides immitis RS]
gi|303310665|ref|XP_003065344.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105006|gb|EER23199.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|392862573|gb|EAS36772.2| KH domain RNA-binding protein [Coccidioides immitis RS]
Length = 366
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 131/331 (39%), Gaps = 75/331 (22%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV +++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 44 AQSMLTLRAIVSTKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 100
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G + N +RLLI+ +Q G +IG +
Sbjct: 101 --LQGTAKAYGMVAKSLLEG------APQMGMGGIIQNNGTHPVRLLISHNQMGTIIGRN 152
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 153 GLKIKCIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKAVWEIGKCLIDDW 206
Query: 222 PRQVIS--------------------ISPAYNYSAIRPAQ-------------------- 241
R + + P N + RP
Sbjct: 207 QRGTGTVLYNPAVRANVGGASMNSAFVGPNPNTYSGRPYNRTGNGADFSDHPGTYNRRHN 266
Query: 242 --------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV-YGGKG 292
P V + T + I +VG +IGR GS IS IR SGA I +
Sbjct: 267 SDAPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRSSGARISIAKAAHD 326
Query: 293 EQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
E R GSAQ A ++ +Y L
Sbjct: 327 ETGERMFTIMGSAQ----ANEKALYLLYENL 353
>gi|302697985|ref|XP_003038671.1| hypothetical protein SCHCODRAFT_80836 [Schizophyllum commune H4-8]
gi|300112368|gb|EFJ03769.1| hypothetical protein SCHCODRAFT_80836 [Schizophyllum commune H4-8]
Length = 308
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 40/297 (13%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R +V ++ G +IGK G + ++RE T ++ + ERV+ I+
Sbjct: 3 LRALVSTKDAGVIIGKGGKNVAELREVTGVKAGVSKVVPGVHERVLTINGSPEG-----I 57
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
A Q I A ++ + E IRLL++ + G +IG G I+ ++++
Sbjct: 58 AKAYQHIIAQLVSASAGSPELDASVVATNPHTMIRLLVSHNLMGTIIGRGGLKIKAIQDA 117
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI--- 228
SGA +V + LP ++RVV++ G + A+ EI L E+ R ++
Sbjct: 118 SGARLV-AQKDMLP-----QSTERVVEVHGVPDEIGRAIYEISKSLLEDWERNTGTVLYH 171
Query: 229 -------------------SPAYNYSAIRPAQPFVEPTSADYV--TFEMLISESLVGGLI 267
SP AI P ++ + + T + I +VG +I
Sbjct: 172 PQAAEASGAAARRPSTNGFSPGARRRAISPTPSAGSQSTPNALIRTQNISIPSDMVGCII 231
Query: 268 GRCGSNISRIRNESGAMIKVYGG-KGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
GR G+ I+ IR SG+ I + E R GS + A ++ +Y+QL
Sbjct: 232 GRGGTKITEIRRLSGSKISIAKAPHDETGERMFTIVGSPE----ANEKALYLLYNQL 284
>gi|119585581|gb|EAW65177.1| poly(rC) binding protein 4, isoform CRA_f [Homo sapiens]
Length = 244
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 89/166 (53%), Gaps = 19/166 (11%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G +++IRE++ A I I++ S + ++
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTIT 66
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEK 167
+ A+ ++I D + A+ G+V+ T+RL+I SQ G LIG +G I++
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKE 126
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEI 213
+R ++GA + + A + LP + ++R V +SG A++ + +I
Sbjct: 127 IRETTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQI 166
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+R+L+ G + G +IG G+ ++++R S A I I + +R+ I+G
Sbjct: 19 TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI---------SEGSCPERITTITGST 69
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
AV +A+ I +L E+ + +PA + RP VT ++I S
Sbjct: 70 AAVFHAVSMIAFKLDED-----LCAAPANGGNVSRPP-----------VTLRLVIPASQC 113
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G+ I IR +GA ++V G
Sbjct: 114 GSLIGKAGTKIKEIRETTGAQVQVAG 139
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R+++P+ Q G +IGK G +I++IRE T A +++A D + ER + +S + ++
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 109 SDAENALQQIAALILK 124
++QI A+IL+
Sbjct: 162 -----CVRQICAVILE 172
>gi|147832545|emb|CAN68300.1| hypothetical protein VITISV_009906 [Vitis vinifera]
Length = 408
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
T+RLL+ +Q GC+IG GQ I+ +R+ SGA I IL + LP C+ + S+ ++QIS +
Sbjct: 284 TVRLLVPSNQIGCVIGKGGQIIQSIRSESGAQIRILKDDHLPSCSLS--SNELIQISREP 341
Query: 204 PAVLNALVEIGNQLRENPPR 223
V L +I ++L +NP R
Sbjct: 342 FIVRKILYQIASRLHDNPSR 361
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 33/152 (21%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE 94
E+ G D + +A V R++VPS QIG VIGK G IQ IR E+ A I+I ++
Sbjct: 271 EVHGEDSE---EANQVTVRLLVPSNQIGCVIGKGGQIIQSIRSESGAQIRILK-----DD 322
Query: 95 RVIIISSKDNDNVVSDAE-----NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
+ S N+ + E L QIA+ L D+ S S+ H+ + I
Sbjct: 323 HLPSCSLSSNELIQISREPFIVRKILYQIASR-LHDNPSRSQ-------HLFVYVVP--I 372
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
S +G L+G+ +SGA I+ LAP
Sbjct: 373 GYSSSGSLMGL----------TSGAPIIGLAP 394
>gi|195154050|ref|XP_002017936.1| GL17034 [Drosophila persimilis]
gi|194113732|gb|EDW35775.1| GL17034 [Drosophila persimilis]
Length = 506
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 26/210 (12%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR D D KR + +D + RI++PS G VIGK G IQK+R T K+
Sbjct: 2 KREMNDAGDGPQDQKRNRRNEDTV-RILIPSSIAGAVIGKGGQHIQKMR-----TQKVEG 55
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
+ + + K + +D E L+ I ++ ++ + + +RL
Sbjct: 56 KSKPNRDSI----PKATIQISADIEATLEIITEMLKYFEERDEDFD-----------VRL 100
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
LI S AGC+IG GQ I+++R+ G + + N P +DRVVQ G V+
Sbjct: 101 LIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAP-----QSTDRVVQTVGKQAQVI 155
Query: 208 NALVEIGNQLRENPPRQVISISPAYNYSAI 237
A+ E+ R+ P + I N+ +
Sbjct: 156 EAVREVITLTRDTPIKGAIHNYDPMNFDRV 185
>gi|322698395|gb|EFY90165.1| KH domain RNA-binding protein [Metarhizium acridum CQMa 102]
Length = 367
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 127/312 (40%), Gaps = 66/312 (21%)
Query: 29 RRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
RR DGE + A+AQ + R IV S++ G +IGK G + +R+ET ++
Sbjct: 27 RRGPDGEPAPKTDEEYAQAQ-LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKV 85
Query: 89 IARHEERVIIISSKDNDNVVSDA-ENALQQIAALILKDDDSNSEASKVAAG--HVAANTI 145
+ +RV+ I+ + DA A +A +L+ + V + H+++ I
Sbjct: 86 VQGVHDRVLTITGE------CDAISRAYAIVARALLEGAPAMGMGGIVQSNGTHLSSTAI 139
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
+LLI+ +Q G +IG G I+ +++ SG +V LP ++R+V++ G
Sbjct: 140 KLLISHNQMGTIIGRQGLKIKHIQDVSGVRMV-AQKEMLP-----QSTERIVEVQGTPDG 193
Query: 206 VLNALVEIGNQLRENPPRQVISI---------------SPAYNYSAIRP----------- 239
+ A+ EI L ++ R ++ YN R
Sbjct: 194 IQRAVWEICKCLVDDWQRGTGTVLYNPVVRTQAGSGGLGSNYNNGGGRSDYGSPRVMRTG 253
Query: 240 ---------AQPFVEPTSADYV---------------TFEMLISESLVGGLIGRCGSNIS 275
+PF + +D T + I +VG +IGR GS IS
Sbjct: 254 NGADFSNGGVRPFSRRSDSDAASRGPPTHDENGEEIQTQNISIPADMVGCIIGRAGSKIS 313
Query: 276 RIRNESGAMIKV 287
IR SGA I +
Sbjct: 314 EIRKTSGARISI 325
>gi|301771920|ref|XP_002921378.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
isoform 2 [Ailuropoda melanoleuca]
Length = 582
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 121/273 (44%), Gaps = 47/273 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNY--------------------SAIRPAQPFVEPT-SADYVTF 254
+ S++ P N SA+ P P T S++ T
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPHNSFTRSSETETV 411
Query: 255 EMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I VG +IG+ G +I ++ +GA IK+
Sbjct: 412 HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 444
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 113/289 (39%), Gaps = 76/289 (26%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+ + + ER
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 97 IIISSKDNDNVVSDAENALQQ---------IAALILKDD-------------DSNSEASK 134
I + K N + AE + + IA++ L+ S
Sbjct: 327 ITV--KGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPP 384
Query: 135 VAAGHVAA----------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
+G +A T+ L I G +IG GQ+I++L +GA+I I
Sbjct: 385 PTSGPPSAMTPPYPHNSFTRSSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 444
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIR 238
AP + P R+V I+G A A I +++E
Sbjct: 445 -APAEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE------------------- 479
Query: 239 PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 480 --ENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 526
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 413 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 466
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 467 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 518
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 519 LSSAEVVV------PRDQTPDENDQVVVKITG 544
>gi|326500580|dbj|BAK06379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 471
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 4/169 (2%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV-VS 109
+FR++V ++G +IG+ G I+++ E T+A +++ D R+++IS+ + ++
Sbjct: 95 VFRLVVAGDKVGGLIGRRGEVIKRLCEVTRARVRVLDPTDGVSSRIVLISATEETQAELA 154
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +A +I + + N + + +G + RLL+ +Q LIG G I+ ++
Sbjct: 155 PAMDAAVRIFKHVNDIEGINPDFTLPVSGPEICSA-RLLVPKAQGRHLIGKQGTTIQLMQ 213
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
S+G TI I+ ++ L ++ +R+V+I G VLNAL + LR
Sbjct: 214 ESTGTTIRIIDKDE--LLSNQMVEERIVEIRGASLKVLNALKSVLGLLR 260
>gi|270010095|gb|EFA06543.1| hypothetical protein TcasGA2_TC009450 [Tribolium castaneum]
Length = 756
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 126/286 (44%), Gaps = 37/286 (12%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
I VP + +G +IG+ G +I +++ E+ I++A +RV +S ++ A+
Sbjct: 124 IKVPDKMVGLIIGRGGEQITRLQSESGCKIQMAPDSQGMPDRVCSLSG--TKEAINRAKE 181
Query: 114 ALQQIA---------ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQN 164
+ I + + G N + ++I G + G +IG G+
Sbjct: 182 LIMNIVHQRGRTEGLGMNNMNQGMGGGGGGGGGGGGGRNFVEIMIPGPKVGLIIGKGGET 241
Query: 165 IEKLRNSSGATIVIL--APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
I++L+ SGA +V++ PNQ E ++ ++ISGD + VE QL +
Sbjct: 242 IKQLQEKSGAKMVVIQDGPNQ--------EQEKPLRISGDP-----SKVEYAKQLVYD-- 286
Query: 223 RQVISISPAYNYSAIRPA------QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISR 276
+I+ NY+ Q + + E+L+ VG +IG+ G I +
Sbjct: 287 --LIAEKEMQNYNRRGGGGRQDDRQQYNDYGGGGGNEAEVLVPRQAVGVVIGKGGDMIKK 344
Query: 277 IRNESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAKQRVDEYIYS 321
I+ E+GA ++ + E R G+ +QV A+QR++E I S
Sbjct: 345 IQAETGARVQFQQAREEGPGERRCYLSGTPKQVEQARQRIEELIDS 390
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
G +IG G+ I +L++ SG I +AP+ S DRV +SG A+ A I
Sbjct: 132 GLIIGRGGEQITRLQSESGCKIQ-MAPD------SQGMPDRVCSLSGTKEAINRAKELIM 184
Query: 215 NQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNI 274
N + + + + ++ ++V E++I VG +IG+ G I
Sbjct: 185 NIVHQRGRTEGLGMNNMNQGMGGGGGGGGGGGGGRNFV--EIMIPGPKVGLIIGKGGETI 242
Query: 275 SRIRNESGA-MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQLIQ 325
+++ +SGA M+ + G +++ + ++ G +V AKQ V + I + +Q
Sbjct: 243 KQLQEKSGAKMVVIQDGPNQEQEKPLRISGDPSKVEYAKQLVYDLIAEKEMQ 294
>gi|390335393|ref|XP_003724136.1| PREDICTED: far upstream element-binding protein 3-like isoform 2
[Strongylocentrotus purpuratus]
Length = 696
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 125/266 (46%), Gaps = 34/266 (12%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAEN 113
++VP + +G +IG++G +I ++ E+ I+IA +R + ++
Sbjct: 128 LLVPDKVVGLIIGRQGQQISSLQSESGCNIQIAPENGISGDRQVTLTG---------TPE 178
Query: 114 ALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG 173
A+ +LIL D N + A G++ T+ +LI ++ G +IG G+ I++L+ +G
Sbjct: 179 AVMHAKSLIL--DIVNKASQNEAEGNM---TVDMLIPATKVGLVIGKGGETIKQLQEQAG 233
Query: 174 ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYN 233
+V++ + P+ D+ ++ISGD + A + +++ EN S +
Sbjct: 234 VRMVMI--QEGPVATGM---DKPLRISGDSQKIEEAKRLV-SEVMENAKNNDRSSGDNF- 286
Query: 234 YSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGE 293
YS P + + P A VG +IGR G I RI+ ++ A ++ G +
Sbjct: 287 YSRGGPHKDVIVPKHA-------------VGMVIGRGGDMIKRIQEQTKARVQFKPGDRD 333
Query: 294 QKHRHIQFGGSAQQVALAKQRVDEYI 319
R GSA+ V++A+ V++ +
Sbjct: 334 APERVALITGSAESVSMAESMVNDLV 359
>gi|398397391|ref|XP_003852153.1| hypothetical protein MYCGRDRAFT_109444 [Zymoseptoria tritici
IPO323]
gi|339472034|gb|EGP87129.1| hypothetical protein MYCGRDRAFT_109444 [Zymoseptoria tritici
IPO323]
Length = 362
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 123/297 (41%), Gaps = 73/297 (24%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN 104
A+AQ + R IV S++ G +IGK G + +R++T ++ + +RV+ ++
Sbjct: 37 AQAQ-LTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVSKVVPGVHDRVLTVT---- 91
Query: 105 DNVVSDAENALQQIA-ALILKDDDSNSEASKVAAGHV--AANT--IRLLIAGSQAGCLIG 159
AL IA A L D A ++ G V + NT IRLLI+ +Q G +IG
Sbjct: 92 --------GALTGIADAYGLVADSLVKGAPQMGMGGVVGSPNTHPIRLLISHNQMGTIIG 143
Query: 160 MSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219
G I++++++SG +V LP ++R+V++ G + ++ EIG L +
Sbjct: 144 RQGLKIKQIQDASGVRMVAQK-EMLP-----QSTERIVEVQGTPEGIQKSVWEIGKCLID 197
Query: 220 N--------------------PP------------------------RQVISISPAYNYS 235
+ PP S +PA +Y
Sbjct: 198 DEQRGYGTVLYSPAVRVQGGAPPAINGASPVGFGGGAPRSFARTGNGADFTSGAPASSYP 257
Query: 236 AIR-----PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
R P V D T + I +VG +IGR GS IS IR SGA I +
Sbjct: 258 PRRNGGSDAGPPPVVEDGEDIQTQNISIPADMVGCIIGRGGSKISEIRKSSGARISI 314
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 37/189 (19%)
Query: 99 ISSKDNDNVVSDAENALQQIAALI--LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+S++DN V+ +N + Q+A + L D+ + A + T+R ++ +AG
Sbjct: 1 MSAEDNSPVL---DNGIDQLADKMGGLNADERPRTEEEYAQAQL---TLRAIVTSKEAGV 54
Query: 157 LIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214
+IG +GQN+ LR+ +G A + + P H DRV+ ++G + + +A +
Sbjct: 55 IIGKAGQNVADLRDKTGVRAGVSKVVPG-------VH--DRVLTVTGALTGIADAYGLVA 105
Query: 215 NQLRENPPRQVI-SISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSN 273
+ L + P+ + + + N IR +LIS + +G +IGR G
Sbjct: 106 DSLVKGAPQMGMGGVVGSPNTHPIR-----------------LLISHNQMGTIIGRQGLK 148
Query: 274 ISRIRNESG 282
I +I++ SG
Sbjct: 149 IKQIQDASG 157
>gi|426217760|ref|XP_004003120.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Ovis aries]
Length = 599
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 136/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 160 VSSPSPPQRAQRGDHSSREQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 217
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ D
Sbjct: 218 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKL 271
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 272 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 319
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS------ISPAYNYSAI-------- 237
+R + + G V A +A +EI +LRE +++ + P N SA+
Sbjct: 320 NPERTITVKGTVEACASAEIEIMKKLREAFENDMLAANQQANLIPGLNLSALGIFSTGLS 379
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 380 VLPPPAGPRGAPPAPPYHPFA--THSGYFSSLCPPHQFGPFPHHHSYPEQEIVNLFIPTQ 437
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 468
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 416 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 475
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 476 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 523
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 524 VIGKGGKTVNELQNLTSAEVIV 545
>gi|426219907|ref|XP_004004159.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Ovis aries]
Length = 439
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
D+ ER++ IS +D E + + +I E + G +R
Sbjct: 80 DSSG--PERILSIS--------ADIETIGEILKKII-----PTLEEYQHYKGSDFDCELR 124
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI S AG +IG+ G I++LR ++ TI + C + +DRVV I G V
Sbjct: 125 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQ----ECCPQS--TDRVVLIGGKPDRV 178
Query: 207 LNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
+ + I + + E+P + +P P + DY F M+ +
Sbjct: 179 VECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 221
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 423
Query: 108 VSDAENALQQIAALIL 123
+N+++Q +
Sbjct: 424 QYLLQNSVKQYSGKFF 439
>gi|390474894|ref|XP_002758191.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Callithrix jacchus]
Length = 1052
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 74/314 (23%)
Query: 31 REDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADA 88
RE G G +A+ D RI+VP++ +G +IGKEG I+ I ++T++ + I +
Sbjct: 630 REQGHAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 687
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
E+ V I ++ + + A + I ++ K+ D A ++ +++L
Sbjct: 688 SGAAEKPVTIHATPEGTS------EACRMILEIMQKEADETKLAEEIP--------LKIL 733
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
G LIG G+N++K+ + +G I I + L S + +R + + G V A
Sbjct: 734 AHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIYNPERTITVKGTVEACAC 789
Query: 209 ALVEIGNQLRENPPRQVISIS------PAYNYSAI----------------------RPA 240
A +EI +LRE +++++ P N SA+ P
Sbjct: 790 AEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLSPPAGPRGAPPAAPY 849
Query: 241 QPFVEPTSADYVT----------------------FEMLISESLVGGLIGRCGSNISRIR 278
PF T + Y + + I VG +IG+ G++I ++
Sbjct: 850 HPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLA 907
Query: 279 NESGAMIKVYGGKG 292
+GA IK+ +G
Sbjct: 908 RFAGASIKIAPAEG 921
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 869 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 928
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 929 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 976
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 977 VIGKGGKTVNELQNLTSAEVIV 998
>gi|170084019|ref|XP_001873233.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650785|gb|EDR15025.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 318
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 119/277 (42%), Gaps = 51/277 (18%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V ++ G +IGK G + +RE+T ++ I ERV+ ++ V +
Sbjct: 1 LTLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPGVHERVLTVTGP----VEA 56
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A+ I+ L++ + S S + +IRLLI+ + G +IG SG I+ ++
Sbjct: 57 VAKAYTLIISQLVISNPSSPVTPSSSPS--SLHTSIRLLISHNLMGTIIGRSGLKIKAIQ 114
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV--IS 227
+ SGA +V + LP ++RVV++ G A+ A+ EIG L E+ R + +
Sbjct: 115 DGSGARMVA-SKEMLP-----QSTERVVEVQGSPEAIGRAVEEIGKCLLEDWERGLGTVL 168
Query: 228 ISPAYN-------------------------------------YSAIRPAQPFVEPTSAD 250
+P S +P P T+A+
Sbjct: 169 FNPGTGDDRSGGNRRGGHGYSGSYSGSRRSNGDAAPRARTPPPGSPTQPQSPASSQTAAN 228
Query: 251 YVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T + I +VG +IGR G+ I+ IR SG+ I +
Sbjct: 229 LRTQNISIPSDMVGCIIGRSGTKITEIRRLSGSKISI 265
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L++ AG +IG +G+N+ LR +G A + + P HE RV+ ++G
Sbjct: 2 TLRALVSTKDAGVIIGKAGKNVADLREQTGVKAGVSKVIPG-------VHE--RVLTVTG 52
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISES 261
V AV A I +QL VIS + + S+ + + +LIS +
Sbjct: 53 PVEAVAKAYTLIISQL-------VISNPSSPVTPSSS--------PSSLHTSIRLLISHN 97
Query: 262 LVGGLIGRCGSNISRIRNESGA-MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIY 320
L+G +IGR G I I++ SGA M+ + R ++ GS + + A + + + +
Sbjct: 98 LMGTIIGRSGLKIKAIQDGSGARMVASKEMLPQSTERVVEVQGSPEAIGRAVEEIGKCLL 157
>gi|296825084|ref|XP_002850758.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
gi|238838312|gb|EEQ27974.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
Length = 367
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 125/310 (40%), Gaps = 71/310 (22%)
Query: 32 EDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA 90
+ GE E AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 29 DQGEAEAPPKTDEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQ 88
Query: 91 RHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIR 146
+RV+ ++ + A +A +L+ A ++ G V N ++R
Sbjct: 89 GVHDRVLTVTGP-----LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVR 137
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
LLI+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G +
Sbjct: 138 LLISHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGI 191
Query: 207 LNALVEIGNQLRENPPRQVISI-----------------------------SPAYNYS-- 235
A+ EIG L ++ R ++ S +YN +
Sbjct: 192 EKAIWEIGKCLIDDWQRGTGTVLYNPAVRASVGSGPGQASAAGSNPSYGGNSRSYNRTGN 251
Query: 236 ----AIRPAQ--------------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRI 277
+ P P V + T + I +VG +IGR G+ IS I
Sbjct: 252 GADFSDHPGSYGRRGNNDNPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGTKISEI 311
Query: 278 RNESGAMIKV 287
R SGA I +
Sbjct: 312 RRSSGARISI 321
>gi|332242549|ref|XP_003270447.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3
isoform 1 [Nomascus leucogenys]
Length = 579
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 119/272 (43%), Gaps = 48/272 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNY--------------------SAIRPAQPFVEPTSADYVTFE 255
+ S++ P N SA+ P P E + + T
Sbjct: 352 ENDIASMNVQTHLIPGLNLNDLGLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETE--TVH 409
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I VG +IG+ G +I ++ +GA IK+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 113/286 (39%), Gaps = 73/286 (25%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA------------- 86
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 87 -------DAIARHEERVI--IISSKDNDNVVSDAENALQQIAALILKD---DDSNSEASK 134
+ A+ EE ++ I S +ND + + L I L L D S
Sbjct: 327 ITVKGSVETCAKAEEEIMKKIRESYENDIASMNVQTHL--IPGLNLNDLGLFPPTSGMPP 384
Query: 135 VAAGHVAA-------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181
+G +A T+ L I G +IG GQ+I++L +GA+I I AP
Sbjct: 385 PTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-AP 443
Query: 182 NQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQ 241
+ P R+V I+G A A I +++E +
Sbjct: 444 AEAP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------E 477
Query: 242 PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
FV P + + + G +IG+ G ++ ++N S A + V
Sbjct: 478 NFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVV 523
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 24/152 (15%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P+ +G +IGK+G I+++ A+IKIA A A + R++II+ +A+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGP------PEAQ 463
Query: 113 NALQQIAALILKDDD--SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
Q +K+++ S E K+ A + + AG +IG G+ + +L+N
Sbjct: 464 FKAQGRIYGKIKEENFVSPKEEVKLEA--------HIRVPSFAAGRVIGKGGKTVNELQN 515
Query: 171 SSGATIVILAPNQLPLCASAHESDR-VVQISG 201
S A +V+ P + E+D+ VV+I+G
Sbjct: 516 LSSAEVVV------PRDQTPDENDQVVVKITG 541
>gi|390355846|ref|XP_003728637.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Strongylocentrotus purpuratus]
Length = 345
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 20/175 (11%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
DV FR++V S + G +I K G I+++R + AT+ I D+ I+ +SK+N
Sbjct: 8 DVTFRLLVSSNKAGGLIAKGGQNIKRLRSDYNATVSIPDSSGPDRVLQIVANSKEN---- 63
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHV--AANTIRLLIAGSQAGCLIGMSGQNIE 166
+ ++++ LI E S + G T+ +L+ SQ G +IG +G I+
Sbjct: 64 --GLDIIEELIPLI------REEVSPFSDGEADPCTTTLSVLVQTSQVGAIIGRAGIKIK 115
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+LR S+ + + LP C+ ++ +VQI+G AVL A+ EI E P
Sbjct: 116 ELRESTKTKVKVFQ-ECLP-CS----TESLVQINGTPDAVLLAIGEIYVTCSEAP 164
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
++ +P+ +G VIG+ G RI+ IR ++A I+IA+ + E+RVI I + +S A
Sbjct: 272 LQVTIPNDLVGAVIGRGGERIRNIRSRSQAEIEIANPLPEAEDRVITI--RGTQEQISHA 329
Query: 112 ENALQ 116
+ LQ
Sbjct: 330 QFLLQ 334
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 250 DYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHI 299
D VTF +L+S + GGLI + G NI R+R++ A + + G + I
Sbjct: 7 DDVTFRLLVSSNKAGGLIAKGGQNIKRLRSDYNATVSIPDSSGPDRVLQI 56
>gi|344251660|gb|EGW07764.1| Insulin-like growth factor 2 mRNA-binding protein 3 [Cricetulus
griseus]
Length = 393
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 38/246 (15%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 96 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKPITILST 155
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A A + I ++ K+ +V +A N G LIG
Sbjct: 156 PEG------ASAACKSILEIMHKEAQDTKLTEEVPLKILAHNNF--------VGRLIGKE 201
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G+V A EI ++RE+
Sbjct: 202 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGNVETCARAEEEIMKKIRESY 257
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
+ S++ ++ T + I VG +IG+ G +I ++ +
Sbjct: 258 ENDIASMN------------------QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFA 299
Query: 282 GAMIKV 287
GA IK+
Sbjct: 300 GASIKL 305
>gi|326530414|dbj|BAJ97633.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI----ADAIARHEERVIIISS 101
+ ++ RI+ S IG VIG+ G ++++ ++T A I + DA ER+I+ISS
Sbjct: 63 EPEEFSIRILCASELIGPVIGRSGANVRQVEQQTGARIVVQELHKDASG---ERLIVISS 119
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT------IRLLIAGSQAG 155
K+ A+ I ALIL S ASKV+ + + RL++ + G
Sbjct: 120 KE-----IPADPVSPTIEALILL--HSKVSASKVSEPSESEPSGEHKLVTRLVVPSKKVG 172
Query: 156 CLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN 215
C++G G+ I ++R GA I + + P S +E +VQ+SG AL EI +
Sbjct: 173 CILGEGGKVITEMRRRIGAEIRVYSKADKPKYLSFNEE--LVQVSGSPDIAREALTEIAS 230
Query: 216 QLRE 219
+LR+
Sbjct: 231 RLRD 234
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 30/160 (18%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG-D 202
+IR+L A G +IG SG N+ ++ +GA IV+ +L AS +R++ IS +
Sbjct: 68 SIRILCASELIGPVIGRSGANVRQVEQQTGARIVV---QELHKDASG---ERLIVISSKE 121
Query: 203 VPA-----VLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPF-VEPTSADYVTFEM 256
+PA + AL+ + +++ SA + ++P EP+ + +
Sbjct: 122 IPADPVSPTIEALILLHSKV-----------------SASKVSEPSESEPSGEHKLVTRL 164
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKH 296
++ VG ++G G I+ +R GA I+VY + K+
Sbjct: 165 VVPSKKVGCILGEGGKVITEMRRRIGAEIRVYSKADKPKY 204
>gi|170578788|ref|XP_001894545.1| KH domain containing protein [Brugia malayi]
gi|158598797|gb|EDP36609.1| KH domain containing protein [Brugia malayi]
Length = 377
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 150/373 (40%), Gaps = 93/373 (24%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET--KATI 83
SGKR+R D E A R++V SR G +IGK G I+++R E TI
Sbjct: 21 SGKRQRPDSYQEA------LAAGKYELRLLVSSRGAGGIIGKGGENIKRLRSEPLLPVTI 74
Query: 84 KIADAIAR-----------------HEERVIIISSKDND---NVVSDAENALQQIAALIL 123
I++ AR ++ V + S+ + +V+ EN L + +I
Sbjct: 75 LISNPDARSPSSSPATPCCCWMVQYYDANVTVPDSQTPERIATIVATVENVLAIVTEIIP 134
Query: 124 KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
K DD ++ + +R+L+ S AG +IG G I++++ G + + A Q
Sbjct: 135 KLDDRTLQSRESDLNRPIE--LRVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFA--Q 190
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP------PRQVISISPAYN--YS 235
P ++RVV I G +L + I N L+E P P + + P+Y+ Y
Sbjct: 191 CP----PQSTERVVSIKGAPDKILACVNHIMNMLKEIPIKGVTKPYESMFYDPSYSSEYG 246
Query: 236 AIRPAQ---------------------------------------PFVEPTSADYVTFEM 256
P + P++ P + VT
Sbjct: 247 GYPPDRNYRGPMIRGPMAVTSYGNYGRSFQRQIGGRGPLSAVALPPYMGPEESTQVT--- 303
Query: 257 LISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVD 316
I L G +IG+ G I+R+R ESGA I V G + E R I G++ + A
Sbjct: 304 -IPNELGGTIIGKGGERINRVREESGAQI-VVGPQQESGERIITITGTSTAIQTA----- 356
Query: 317 EYIYSQLIQQAGA 329
+Y+ Q ++Q+ A
Sbjct: 357 QYLLQQCVRQSVA 369
>gi|74007267|ref|XP_548937.2| PREDICTED: poly(rC)-binding protein 1-like [Canis lupus familiaris]
Length = 362
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 119/285 (41%), Gaps = 38/285 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+ V
Sbjct: 98 VTLRLVVPAYQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA-----GVP 152
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
++QI ++L+ S+ G V + + A S C G ++
Sbjct: 153 QSVTECVKQICLVMLET------LSQSPQGRVMTIPYQPMPASSPVICAGGQ-----DRW 201
Query: 169 RNSSGATIVILAPNQL------PLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222
++G P+ PL A + + V P L L ++ Q
Sbjct: 202 GYAAGYPHAAGYPHDTHYLEGPPLDAYSIQGQHTVS-----PLDLAKLNQVARQQS---- 252
Query: 223 RQVISISPAYNYSAIRPAQPFVEPTSADY-----VTFEMLISESLVGGLIGRCGSNISRI 277
+ ++ I P V+ A T E I +L+G +IGR G+NI+ I
Sbjct: 253 -HFAMMHGGTGFAGIDSNSPEVKGYWASLDASTQTTHEFTIPNNLIGCIIGRQGANINEI 311
Query: 278 RNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
R SGA IK+ R + GSA ++LA+ ++ + S+
Sbjct: 312 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 356
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 95/185 (51%), Gaps = 23/185 (12%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R+++ +++G +IGK+G ++ R+E+ A I I++ ER+I ++ N
Sbjct: 14 LTIRLLMHRKEVGSIIGKKGESPKRFRKESGARINISEG--NCPERIITLTGPTN----- 66
Query: 110 DAENALQQIAALILK--DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A+ + +I+ ++D NS + A T+RL++ Q G LIG G I++
Sbjct: 67 ----AIFKAFVMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPAYQCGSLIGKGGCKIKE 122
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG----NQLRENPPR 223
+R S+GA + + A + LP + ++R + I+G +V + +I L ++P
Sbjct: 123 IRESTGAQVQV-AGDMLP-----NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQG 176
Query: 224 QVISI 228
+V++I
Sbjct: 177 RVMTI 181
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 25/149 (16%)
Query: 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200
A TIRLL+ + G +IG G++ ++ R SGA I I N C +R++ ++
Sbjct: 12 ATLTIRLLMHRKEVGSIIGKKGESPKRFRKESGARINISEGN----CP-----ERIITLT 62
Query: 201 GDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
G A+ A V I ++L E+ I+ S + +A RP VT +++
Sbjct: 63 GPTNAIFKAFVMIIDKLEED-----INSSMTNSTAASRPP-----------VTLRLVVPA 106
Query: 261 SLVGGLIGRCGSNISRIRNESGAMIKVYG 289
G LIG+ G I IR +GA ++V G
Sbjct: 107 YQCGSLIGKGGCKIKEIRESTGAQVQVAG 135
>gi|327307466|ref|XP_003238424.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326458680|gb|EGD84133.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 367
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 122/295 (41%), Gaps = 71/295 (24%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 44 AQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 100
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G V N ++RLLI+ +Q G +IG
Sbjct: 101 --LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQ 152
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 153 GLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCLIDDW 206
Query: 222 PRQVISI----------------------SPAYNYS-------------AIRPAQ----- 241
R ++ +P+Y S + P+
Sbjct: 207 QRGTGTVLYNPAVRASVGSSSGQGSVTGTNPSYGGSSRSYNRTGNGADFSDHPSSYSRRG 266
Query: 242 ---------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P V + T + I +VG +IGR G+ IS IR SGA I +
Sbjct: 267 NNDNPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGTKISEIRRSSGARISI 321
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 25/174 (14%)
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKL 168
AE L + + + +D +EA A + T+R +++ +AG +IG +G+N+ L
Sbjct: 14 AEETLAESFSRVSVNDQPEAEAPPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADL 73
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
R+ +G + + H DRV+ ++G + A + L E P+ +
Sbjct: 74 RDETGVKAGVSK-----VVQGVH--DRVLTVTGPLQGTSKAYSIVAKSLLEGAPQMGMGG 126
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESG 282
N + + +LIS + +G +IGR G I I++ SG
Sbjct: 127 VVQNNGTH----------------SVRLLISHNQMGTIIGRQGLKIKYIQDASG 164
>gi|148676563|gb|EDL08510.1| mCG130458 [Mus musculus]
Length = 569
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D D NS + LLI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDMDGNSTIQE------------LLIPASKVGLVIGKGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK--------- 235
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
++ +R F + A + E+ + +VG +IGR G I +I+N++G I+
Sbjct: 236 DQADFRGVR--SDFT--SRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A + ++E I +
Sbjct: 292 DDGISPERAAQVMGPPDRCQHAARIINELILT 323
>gi|196016215|ref|XP_002117961.1| hypothetical protein TRIADDRAFT_61998 [Trichoplax adhaerens]
gi|190579434|gb|EDV19529.1| hypothetical protein TRIADDRAFT_61998 [Trichoplax adhaerens]
Length = 364
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 130/330 (39%), Gaps = 75/330 (22%)
Query: 55 IVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENA 114
+V ++ G++IGK G +I+ RE++ A I I+D ER++ V+ +A
Sbjct: 51 LVEQKEAGRIIGKGGAKIKSFREQSTARINISDG--SLPERIV---------TVNGPIDA 99
Query: 115 LQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
+ + LI + D + ++ LLI +IG G ++++R S+GA
Sbjct: 100 VCKAFKLICQKLDEDFRIINNSSKSEPTIKFDLLIPVPHCRSIIGKGGGTVKEIRESTGA 159
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISP---- 230
+ I A N LP + SDRV+ I+G A+ + + L E P Q + P
Sbjct: 160 QVSI-ASNVLP-----NSSDRVMTITGSSSAISKCIQRLSQLLSELPLGQHVPYQPKPPN 213
Query: 231 ----AYN------------------------YSAIRPAQPFVEPTSADYV---------- 252
A+ Y P + P S D
Sbjct: 214 VPPTAFQNGQVHELTFAVPGPFPIPPHAQLPYGPPVPVITQIAPYSVDIPSIVTQNFSAM 273
Query: 253 ----TFE-----MLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGG 303
TF + I L+G +IGR G I+ IR SGA IK+ G+ R + G
Sbjct: 274 SNGGTFARSTQLLKIPHDLIGCIIGRGGVKINEIRQISGANIKIASPNGDTTGRQVTISG 333
Query: 304 SAQQVALAKQRVDE-------YIYSQLIQQ 326
+ + ++ A+ + + IYS ++ +
Sbjct: 334 TPESISAAQYLISQSYKGLHVCIYSYIVMR 363
>gi|115496720|ref|NP_001070027.1| insulin-like growth factor 2 mRNA-binding protein 1 [Danio rerio]
gi|123908308|sp|Q08CK7.1|IF2B1_DANRE RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 1;
Short=IGF2 mRNA-binding protein 1; Short=IMP-1; AltName:
Full=IGF-II mRNA-binding protein 1; AltName: Full=VICKZ
family member 1
gi|115313169|gb|AAI24197.1| Insulin-like growth factor 2 mRNA binding protein 1 [Danio rerio]
gi|182891894|gb|AAI65463.1| Igf2bp1 protein [Danio rerio]
Length = 598
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 43/264 (16%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDN 106
D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I S+ +
Sbjct: 198 DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKPISIHSTPEG-- 255
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A + +I KD + E +++L + G LIG G+N++
Sbjct: 256 -CSAACRMILEIMNQEAKDTKTADEVP-----------LKVLAHNNFVGRLIGKEGRNLK 303
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
K+ + I I L L + +R + + G + A A EI ++RE +
Sbjct: 304 KVEQDTDTKITISPLQDLTL----YNPERTITVKGSIEACCLAEQEIMKKVREAYDNDIA 359
Query: 227 SIS------PAYNYSAIR-----------------PAQPFVEPTSADYVTFEMLISESLV 263
+++ P N AI P P+ +++ T + I V
Sbjct: 360 AMNQQTHLIPGLNLGAIGLFPPSSAMPPPALGNSVPGPPYGPMGASEQETVHVYIPAQAV 419
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ G +I ++ +GA IK+
Sbjct: 420 GALIGKKGQHIKQLSRFAGASIKI 443
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A A + R++I++ +A+
Sbjct: 412 VYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTGP------PEAQ 465
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
Q LK+++ +V + +A + AG +IG G+ + +L+N +
Sbjct: 466 FKAQGRIYGKLKEENFFGPKEEVKL------ETHIKVAAAAAGRVIGKGGKTVNELQNLT 519
Query: 173 GATIVILAPNQLPLCASAHESDRVV 197
A +V+ P + E D+V+
Sbjct: 520 AAEVVV------PREQTPDEHDQVI 538
>gi|315055291|ref|XP_003177020.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
gi|311338866|gb|EFQ98068.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
Length = 367
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 71/295 (24%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 44 AQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 100
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G V N ++RLLI+ +Q G +IG
Sbjct: 101 --LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQ 152
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE-- 219
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L +
Sbjct: 153 GLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCLIDDW 206
Query: 220 ---------NP---------PRQ--VISISPAYNYS-------------AIRPAQ----- 241
NP P Q V +P+Y S + P
Sbjct: 207 QRGTGTVLYNPAVRASVGSGPGQGPVAGSNPSYGGSSRSYNRTGNGADFSDHPGSYNRRG 266
Query: 242 ---------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P V + T + I +VG +IGR G+ IS IR SGA I +
Sbjct: 267 NNDNPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGTKISEIRRSSGARISI 321
>gi|124021196|gb|ABM88866.1| IGF2 mRNA-binding protein 1 [Danio rerio]
Length = 598
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 43/264 (16%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISSKDNDN 106
D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I S+ +
Sbjct: 198 DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKPISIHSTPEG-- 255
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
S A + +I KD + E +++L + G LIG G+N++
Sbjct: 256 -CSAACRMILEIMNQEAKDTKTADEVP-----------LKVLAHNNFVGRLIGKEGRNLK 303
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
K+ + I I L L + +R + + G + A A EI ++RE +
Sbjct: 304 KVEQDTDTKITISPLQDLTL----YNPERTITVKGSIEACCLAEQEIMKKVREAYDNDIA 359
Query: 227 SIS------PAYNYSAIR-----------------PAQPFVEPTSADYVTFEMLISESLV 263
+++ P N AI P P+ +++ T + I V
Sbjct: 360 AMNQQTHLIPGLNLGAIGLFPPSSAMPPPALGNSVPGPPYGPMGASEQETVHVYIPAQAV 419
Query: 264 GGLIGRCGSNISRIRNESGAMIKV 287
G LIG+ G +I ++ +GA IK+
Sbjct: 420 GALIGKKGQHIKQLSRFAGASIKI 443
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEE-RVIIISSKDNDNVVSDAE 112
+ +P++ +G +IGK+G I+++ A+IKIA A A + R++I++ +A+
Sbjct: 412 VYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTGP------PEAQ 465
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
Q LK+++ +V + +A + AG +IG G+ + +L+N +
Sbjct: 466 FKAQGRIYGKLKEENFFGPKEEVKL------ETHIKVAAAAAGRVIGKGGKTVNELQNLT 519
Query: 173 GATIVILAPNQLPLCASAHESDRVV 197
A +V+ P + E D+V+
Sbjct: 520 AAEVVV------PREQTPDEHDQVI 538
>gi|224922832|ref|NP_001028561.2| far upstream element (FUSE) binding protein 3 [Mus musculus]
gi|74198475|dbj|BAE39720.1| unnamed protein product [Mus musculus]
Length = 575
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D D NS + LLI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDMDGNSTIQE------------LLIPASKVGLVIGKGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK--------- 235
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
++ +R F + A + E+ + +VG +IGR G I +I+N++G I+
Sbjct: 236 DQADFRGVR--SDFT--SRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A + ++E I +
Sbjct: 292 DDGISPERAAQVMGPPDRCQHAARIINELILT 323
>gi|392558575|gb|EIW51762.1| hypothetical protein TRAVEDRAFT_156921 [Trametes versicolor
FP-101664 SS1]
Length = 378
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 122/280 (43%), Gaps = 60/280 (21%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A ++ R ++ ++ +IGK G + +IRE++ A + ++++I + ER++ N
Sbjct: 60 AANIHMRCLIVTQDASIIIGKAGSHVNEIREKSGARVVVSESIPGNPERIL--------N 111
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V + + ++ + +D + V A TI+ +I S+ G +IG G I+
Sbjct: 112 VSGPLDAVSKAFGLIVRRINDEPFDKPSVPGSR--AVTIKFMIPNSRMGSVIGKGGTKIK 169
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI 226
+++ +SGA + + LP ++R++ +SG A+ A IGN L E R
Sbjct: 170 EIQEASGARLN-ASETMLP-----GSTERLLSVSGVADAIHIATYYIGNILIEANERM-- 221
Query: 227 SISPAYNYSAIRP-------AQPFVEP------TSADYV--------------------- 252
P N S+ RP A P P + + YV
Sbjct: 222 ---PTTNNSSYRPSSYQASSAPPSSTPRGRPPYSGSSYVPGGYGQNPYAPAAPAAPAPGP 278
Query: 253 -----TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
T ++ I LVG +IG+ G+ I+ IR+ S + IK+
Sbjct: 279 PSQLQTQQIYIPNDLVGCIIGKGGAKINEIRHMSASQIKI 318
>gi|225543383|ref|NP_076159.3| insulin-like growth factor 2 mRNA-binding protein 3 [Mus musculus]
gi|81916748|sp|Q9CPN8.1|IF2B3_MOUSE RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 3;
Short=IGF2 mRNA-binding protein 3; Short=IMP-3;
Short=mIMP-3; AltName: Full=IGF-II mRNA-binding protein
3; AltName: Full=VICKZ family member 3
gi|11933384|dbj|BAB19755.1| igf2 mRNA-binding protein 3 [Mus musculus]
gi|12847973|dbj|BAB27779.1| unnamed protein product [Mus musculus]
gi|28175449|gb|AAH45138.1| Insulin-like growth factor 2 mRNA binding protein 3 [Mus musculus]
gi|29145081|gb|AAH49082.1| Insulin-like growth factor 2 mRNA binding protein 3 [Mus musculus]
gi|148666183|gb|EDK98599.1| insulin-like growth factor 2 mRNA binding protein 3, isoform CRA_b
[Mus musculus]
Length = 579
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 119/272 (43%), Gaps = 48/272 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSA--------------------IRPAQPFVEPTSADYVTFE 255
+ S++ P N +A + P P E + + T
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSTLTPPYPQFEQSETE--TVH 409
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I VG +IG+ G +I ++ +GA IK+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 109/284 (38%), Gaps = 69/284 (24%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA------------- 86
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 87 -------DAIARHEERVI--IISSKDNDNVVSDAENAL---QQIAALILKDDDSNSEASK 134
+ A+ EE ++ I S +ND + + L + AL L S
Sbjct: 327 ITVKGSVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPT 386
Query: 135 VAAG-----------HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
T+ L I G +IG GQ+I++L +GA+I I AP +
Sbjct: 387 SGPPSTLTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-APAE 445
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPF 243
P R+V I+G A A I +++E + F
Sbjct: 446 AP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------ENF 479
Query: 244 VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V P + + + G +IG+ G ++ +++ S A + V
Sbjct: 480 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVV 523
>gi|149039051|gb|EDL93271.1| rCG45587 [Rattus norvegicus]
Length = 569
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D D NS + LLI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDIDGNSTIQE------------LLIPASKVGLVIGKGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK--------- 235
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
++ +R F + A + E+ + +VG +IGR G I +I+N++G I+
Sbjct: 236 DQADFRGVR--SDFT--SRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A + ++E I +
Sbjct: 292 DDGISPERAAQVMGPPDRCQHAARIINELILT 323
>gi|313224203|emb|CBY43618.1| unnamed protein product [Oikopleura dioica]
Length = 331
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 136/310 (43%), Gaps = 56/310 (18%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
D+ R ++ +Q ++IG+ I+ +RE+T+ I ++ HE+R++ I++K
Sbjct: 7 DLTLRFLMNQKQASQIIGRNASNIKNLREQTECNITLSS--REHEKRLLTIAAKK----- 59
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKL 168
S + + ++ ++ +++ +++K + T+ L+I + G +IG G+ ++ L
Sbjct: 60 SISMKTVSRLGEILEAENNEYGKSTK-----LVPITLTLVIPKNICGMIIGKGGEALKDL 114
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNAL-VEIG-----------NQ 216
R SGA I + A + LP +R QI+G+ +V A+ + IG +
Sbjct: 115 RVKSGAQINMSA-DCLP-----KSDERTCQITGNNISVTQAIDLLIGIMIKAAIDESKGE 168
Query: 217 LRENPPRQVISISP----------------AYNYSAIRPAQPFVEPTSADYVTF------ 254
+ P ++ + P +A A + PT +Y
Sbjct: 169 FKGTPSAEIRAYDPKNAEEPAGRSEKDDKLMQMATAFMTANQMINPT-LEYSPIEINDQL 227
Query: 255 -EMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKH--RHIQFGGSAQQVALA 311
E+ + +G +IG+ G I IR SG I V + K+ R + G+ QQ+ +A
Sbjct: 228 QELRVPNQHMGAIIGKGGKRIGEIRMMSGCNIHVERSDADSKYGMRRLTLKGTKQQITMA 287
Query: 312 KQRVDEYIYS 321
V++ I S
Sbjct: 288 AYLVNQTISS 297
>gi|26353480|dbj|BAC40370.1| unnamed protein product [Mus musculus]
Length = 579
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 119/272 (43%), Gaps = 48/272 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSA--------------------IRPAQPFVEPTSADYVTFE 255
+ S++ P N +A + P P E + + T
Sbjct: 352 ENDIASMNLQANLIPGLNLNALGLFPPTSGMPPPTSGPPSTLTPPYPQFEQSETE--TVH 409
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I VG +IG+ G +I ++ +GA IK+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 109/284 (38%), Gaps = 69/284 (24%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA------------- 86
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 87 -------DAIARHEERVI--IISSKDNDNVVSDAENAL---QQIAALILKDDDSNSEASK 134
+ A+ EE ++ I S +ND + + L + AL L S
Sbjct: 327 ITVKGSVETCAKAEEEIMKKIRESYENDIASMNLQANLIPGLNLNALGLFPPTSGMPPPT 386
Query: 135 VAAG-----------HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
T+ L I G +IG GQ+I++L +GA+I I AP +
Sbjct: 387 SGPPSTLTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-APAE 445
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPF 243
P R+V I+G A A I +++E + F
Sbjct: 446 AP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------ENF 479
Query: 244 VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V P + + + G +IG+ G ++ +++ S A + V
Sbjct: 480 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVV 523
>gi|74151175|dbj|BAE27710.1| unnamed protein product [Mus musculus]
Length = 579
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 119/272 (43%), Gaps = 48/272 (17%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
+ K D+ R++VP++ +G +IGKEG I+ I ++T++ I + + E+ + I+S+
Sbjct: 190 KQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILST 249
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ + A + I ++ K+ ++ +++L + G LIG
Sbjct: 250 PEGTSA------ACKSILEIMHKEAQDIKFTEEIP--------LKILAHNNFVGRLIGKE 295
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ + I I +L L + +R + + G V A EI ++RE+
Sbjct: 296 GRNLKKIEQDTDTKITISPLQELTL----YNPERTITVKGSVETCAKAEEEIMKKIRESY 351
Query: 222 PRQVISIS------PAYNYSA--------------------IRPAQPFVEPTSADYVTFE 255
+ S++ P N +A + P P E + + T
Sbjct: 352 ENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSTLTPPYPQFEQSETE--TVH 409
Query: 256 MLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I VG +IG+ G +I ++ +GA IK+
Sbjct: 410 LFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 109/284 (38%), Gaps = 69/284 (24%)
Query: 46 KAQDVLF------RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA------------- 86
+AQD+ F +I+ + +G++IGKEG ++KI ++T I I+
Sbjct: 267 EAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERT 326
Query: 87 -------DAIARHEERVI--IISSKDNDNVVSDAENAL---QQIAALILKDDDSNSEASK 134
+ A+ EE ++ I S +ND + + L + AL L S
Sbjct: 327 ITVKGSVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPT 386
Query: 135 VAAG-----------HVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183
T+ L I G +IG GQ+I++L +GA+I I AP +
Sbjct: 387 SGPPSTLTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI-APAE 445
Query: 184 LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPF 243
P R+V I+G A A I +++E + F
Sbjct: 446 AP-----DAKVRMVIITGPPEAQFKAQGRIYGKIKE---------------------ENF 479
Query: 244 VEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
V P + + + G +IG+ G ++ +++ S A + V
Sbjct: 480 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVV 523
>gi|63115359|gb|AAY33858.1| KH domain-containing protein [Betula platyphylla]
Length = 166
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQI 199
V + T RLL+ S+ GCLIG G + ++R + A I IL+ LP AS E D +VQI
Sbjct: 3 VISFTTRLLVPTSRIGCLIGKGGAIVTEMRRLTKANIRILSKENLPKVAS--EDDEMVQI 60
Query: 200 SGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSAD 250
SGD+ +AL+++ +LR N + ++ S P P++ P SAD
Sbjct: 61 SGDLDVAKDALMQVVTRLRANLFDREGAV------STFLPVLPYL-PVSAD 104
>gi|355753438|gb|EHH57484.1| hypothetical protein EGM_07121 [Macaca fascicularis]
Length = 464
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 32/246 (13%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
GK ED E EG KR +++ RI++ S+ G VIGK G I+ +R + A++ +
Sbjct: 20 GKCLVEDME-EGQIFKRPGNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 78
Query: 86 ADAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASK 134
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 79 PDSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQ 136
Query: 135 VAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESD 194
G A +RLLI S AG +IG+ G I++LR ++ TI + H +D
Sbjct: 137 HYKGSDFACELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSAD 190
Query: 195 RVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTF 254
RVV I G V+ + I + + E+P + +P P + DY F
Sbjct: 191 RVVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGF 239
Query: 255 EMLISE 260
M+ +
Sbjct: 240 TMVFDD 245
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADYVT- 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFACE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNV 107
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 108 VSDAENALQQIA 119
+N+++Q A
Sbjct: 448 QYLLQNSVKQYA 459
>gi|326470883|gb|EGD94892.1| KH domain RNA-binding protein [Trichophyton tonsurans CBS 112818]
gi|326478447|gb|EGE02457.1| KH domain RNA-binding protein [Trichophyton equinum CBS 127.97]
Length = 367
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 71/307 (23%)
Query: 35 EIEGSDPKRRAKAQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHE 93
E E + AQ +L R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 32 EAEATPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVH 91
Query: 94 ERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLI 149
+RV+ ++ + A +A +L+ A ++ G V N ++RLLI
Sbjct: 92 DRVLTVTGP-----LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVRLLI 140
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G + A
Sbjct: 141 SHNQMGTIIGRQGLKIKYIQDASGVRMV-AQKEMLP-----QSTERIVEVQGTPEGIEKA 194
Query: 210 LVEIGNQLRENPPRQVISI-----------------------------SPAYNYS----- 235
+ EIG L ++ R ++ S +YN +
Sbjct: 195 IWEIGKCLIDDWQRGTGTVLYNPAVRASVGSSSGQGSVTGTATSYGGSSRSYNRTGNGAD 254
Query: 236 -AIRPAQ--------------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNE 280
+ P+ P V + T + I +VG +IGR G+ IS IR
Sbjct: 255 FSDHPSSYSRRGNNDNPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGTKISEIRRS 314
Query: 281 SGAMIKV 287
SGA I +
Sbjct: 315 SGARISI 321
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 25/174 (14%)
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAAN--TIRLLIAGSQAGCLIGMSGQNIEKL 168
AE L + + + +D +EA+ A + T+R +++ +AG +IG +G+N+ L
Sbjct: 14 AEETLAENFSRVSVNDQPEAEATPKTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADL 73
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
R+ +G + + H DRV+ ++G + A + L E P+ +
Sbjct: 74 RDETGVKAGVSK-----VVQGVH--DRVLTVTGPLQGTSKAYSIVAKSLLEGAPQMGMGG 126
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESG 282
N + + +LIS + +G +IGR G I I++ SG
Sbjct: 127 VVQNNGTH----------------SVRLLISHNQMGTIIGRQGLKIKYIQDASG 164
>gi|221060388|ref|XP_002260839.1| RNA-binding protein [Plasmodium knowlesi strain H]
gi|193810913|emb|CAQ42811.1| RNA-binding protein, putative [Plasmodium knowlesi strain H]
Length = 334
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 149/347 (42%), Gaps = 79/347 (22%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DA 88
E+ ++E K + Q +++V + G VIGK G I I +T ++K++
Sbjct: 3 ENNQVE----KNKGTNQLCFVKMLVNNLVAGSVIGKNGSIITSIENKTGCSLKLSPTNSY 58
Query: 89 IARHEERVIIISSKDN--DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
+ERV+++ K +N + + ++QI +D + + K T R
Sbjct: 59 FPNTQERVLVLCGKQEQINNALLIILDKIRQITVQSFQDKQNMNTVPKY--------TCR 110
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE---SDRVVQISGDV 203
++I S A +IG GQ I++L++S+GA I I S+ E ++R++ I G
Sbjct: 111 IVIPKSAASAIIGKGGQQIKQLQDSTGAKIQI----------SSREDGLNERIISIIGPF 160
Query: 204 PAVLNALVEIGNQLRENPP-RQVISI------------SPAYNYSAIRPAQPFVEPTSA- 249
++ + +++ N ++ +P + ++++ S + N+ P +V P
Sbjct: 161 ESISDTAIKVTNSIQNDPNLKDLLNVIYNKDTNMNGRSSLSQNFVNQVPLNGYVVPQQYG 220
Query: 250 -----DYVTFEML--------------------ISESLVGGLIGRCGSNISRIRNESGAM 284
Y+ M+ I + +G +IG+ GS ++ I N +GA
Sbjct: 221 VFQHEQYMDVNMMNSLMRHSRDLFNLPCEISIQIPDEFIGSVIGKNGSRLTNIMNSTGAQ 280
Query: 285 IKVYGGKGE----QKHRHIQFGGSAQQV----ALAKQRVDEYIYSQL 323
I++ KGE R ++ G+ V L QR+ E +Y QL
Sbjct: 281 IRI-SRKGELIPGTADRKVRIMGTVAAVHGAHVLLLQRL-ESVYMQL 325
>gi|89272931|emb|CAJ83219.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
Length = 376
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 43 RRAKAQDVL--FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+R++ D++ RI++ S+ G VIGK G I+ +R + A++ + D+ ER++ IS
Sbjct: 8 KRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSIS 65
Query: 101 SKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGM 160
+D E + ILK E + G+ +RLLI S AG +IG+
Sbjct: 66 --------ADIETIGE-----ILKKIIPTLEEYQHFKGNDFDCELRLLIHQSLAGGIIGV 112
Query: 161 SGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220
G I++LR + TI + H +DRVV I G V+ + I + + E+
Sbjct: 113 KGAKIKELREKTQTTIKLFQE------CCPHSTDRVVLIGGKPDRVVECIKVILDLISES 166
Query: 221 PPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
P + +P P + DY F M+ +
Sbjct: 167 PVK-----------GRSQPYDPNFYDETYDYGGFTMMFDD 195
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAE 112
++ +P G +IGK G RI++IR E+ A+IKI + + ++R+I I+ + + +A+
Sbjct: 301 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQDQ--IQNAQ 358
Query: 113 NALQ 116
LQ
Sbjct: 359 FLLQ 362
>gi|393905262|gb|EJD73914.1| hypothetical protein LOAG_18700 [Loa loa]
Length = 228
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 59 RQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQI 118
+++G +IGK G I+ IR+++ A I I+D ER++ I+ A I
Sbjct: 11 KEVGSIIGKRGDHIKLIRDQSGAKINISDGSC--PERIVTITGS-----TGTINKAFIMI 63
Query: 119 AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
A + D + + + + T+RL++ +Q GC+IG G I+++R ++GA+I +
Sbjct: 64 CAKL--QQDLQALPNSIPKPPI---TMRLIVPATQCGCIIGKGGSKIKEIREATGASIQV 118
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
A LP ++R V ISG ++++ + I L E P
Sbjct: 119 -ASEMLP-----SSTERAVTISGSADSIVDCMRNICQILLEAP 155
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
+ R+IVP+ Q G +IGK G +I++IRE T A+I++A + + ER + IS D++V
Sbjct: 83 ITMRLIVPATQCGCIIGKGGSKIKEIREATGASIQVASEMLPSSTERAVTISG-SADSIV 141
Query: 109 SDAENALQ 116
N Q
Sbjct: 142 DCMRNICQ 149
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 28/135 (20%)
Query: 153 QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVE 212
+ G +IG G +I+ +R+ SGA I I + +R+V I+G + A +
Sbjct: 12 EVGSIIGKRGDHIKLIRDQSGAKINI---------SDGSCPERIVTITGSTGTINKAFIM 62
Query: 213 IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGS 272
I +L+++ SI P P +T +++ + G +IG+ GS
Sbjct: 63 ICAKLQQDLQALPNSI----------PKPP---------ITMRLIVPATQCGCIIGKGGS 103
Query: 273 NISRIRNESGAMIKV 287
I IR +GA I+V
Sbjct: 104 KIKEIREATGASIQV 118
>gi|223649086|gb|ACN11301.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 440
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E S + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 18 ETNGKRPAEDAEEEQSFKRSRNTDDMVELRILLQSKNAGAVIGKGGKNIKSLRTDFNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS++ + + E L+ I L E + G
Sbjct: 78 SVPDSSG--PERILSISAE----IETVGEILLKIIPTL---------EEYQQYNGMDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ +I + C + +DRVV + G
Sbjct: 123 ELRLLIHQSLAGSIIGVKGAKIKELRENTQTSIKLFQ----ECCPQS--TDRVVLVGGKS 176
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + + + E P + +P P + DY F ++ E
Sbjct: 177 ERVVECIKIMLELIAEAPIK-----------GRAQPYDPNFYDETYDYGGFTVMFEE 222
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I IS + +
Sbjct: 365 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQ--IQ 422
Query: 110 DAENALQQIAALILKDDD 127
+A+ LQ A +L D
Sbjct: 423 NAQYLLQNSALHLLGHQD 440
>gi|351697928|gb|EHB00847.1| RNA-binding protein Nova-2 [Heterocephalus glaber]
Length = 320
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 128/288 (44%), Gaps = 48/288 (16%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII- 99
R + + ++++PS G +IGK G I ++++ET ATIK++ D ERV ++
Sbjct: 20 REEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQ 79
Query: 100 -SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLI 158
+++ + V S +++I + K + N + A +L++ S AG +I
Sbjct: 80 GTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLII 139
Query: 159 GMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218
G G ++ + SGA + + +Q P + E RVV +SG+ V A+ I +L
Sbjct: 140 GKGGATVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKLA 194
Query: 219 ENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
++++ I+ + E+LVG ++G+ G + +
Sbjct: 195 AESAKELVEIA----------------------------VPENLVGAILGKGGKTLVEYQ 226
Query: 279 NESGAMIKVYGGKGE----QKHRHIQFGGSAQQVALAKQRVDEYIYSQ 322
+GA I++ KGE ++R + GS A + +Y+ SQ
Sbjct: 227 ELTGARIQI-SKKGEFLPGTRNRRVTITGSP-----AATQAAQYLISQ 268
>gi|426363332|ref|XP_004048795.1| PREDICTED: far upstream element-binding protein 3 [Gorilla gorilla
gorilla]
Length = 572
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D DSNS ++ LI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDVDSNSTIQEI------------LIPASKVGLVIGRGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE +
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVR 244
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+N + + E+ + VG +IGR G I +I+N++G I+
Sbjct: 245 SDFN-------------SRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A + E I +
Sbjct: 292 DDGISPERAAQVMGPPDRCQHAAHIISELILT 323
>gi|403270472|ref|XP_003927203.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
[Saimiri boliviensis boliviensis]
Length = 585
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 136/331 (41%), Gaps = 76/331 (22%)
Query: 16 VTEPEP--RHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQ 73
V+ P P R RE G G +A+ D RI+VP++ +G +IGKEG I+
Sbjct: 146 VSSPSPPQRAQRGDHSSREQGNAPGGS--SQARQIDFPLRILVPTQFVGAIIGKEGLTIK 203
Query: 74 KIREETKATIKI--ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSE 131
I ++T++ + I + E+ V I ++ + + A + I ++ K+ +
Sbjct: 204 NITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTS------EACRMILEIMQKEAEETKL 257
Query: 132 ASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
A ++ +++L G LIG G+N++K+ + +G I I + L S +
Sbjct: 258 AEEIP--------LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDL----SIY 305
Query: 192 ESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS------PAYNYSAI-------- 237
+R + + G V A A +EI +LRE +++++ P N SA+
Sbjct: 306 NPERTITVKGTVEACACAEIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLS 365
Query: 238 --------------RPAQPFVEPTSADYVT----------------------FEMLISES 261
P PF T + Y + + I
Sbjct: 366 VLSPPAGPRGAPPAAPYHPFA--THSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQ 423
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
VG +IG+ G++I ++ +GA IK+ +G
Sbjct: 424 AVGAIIGKKGAHIKQLARFAGASIKIAPAEG 454
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 38 GSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH-EERV 96
G P + + + + +P++ +G +IGK+G I+++ A+IKIA A ER+
Sbjct: 402 GPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERM 461
Query: 97 IIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGC 156
+II+ A +I + +++ N + H+ + S AG
Sbjct: 462 VIITGPPEAQF-----KAQGRIFGKLKEENFFNPKEEVKLEAHIR-------VPSSTAGR 509
Query: 157 LIGMSGQNIEKLRNSSGATIVI 178
+IG G+ + +L+N + A +++
Sbjct: 510 VIGKGGKTVNELQNLTSAEVIV 531
>gi|145341361|ref|XP_001415781.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576004|gb|ABO94073.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 340
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 128/311 (41%), Gaps = 59/311 (18%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+ ++ G VIGK G I + + T A I+++ R + + D +VS
Sbjct: 47 LKFLISPSAAGSVIGKGGATINEFQALTGARIQLS------RNREVFPGTNDRVVIVSGD 100
Query: 112 ENALQQIAALILKDDDSNSEA-SKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRN 170
+A+ Q+ LI+ ++ E ++ VA L++ S GC+IG G I
Sbjct: 101 LSAILQVLHLIITKLVADGEGIDRMGQPQVA-----LVVPNSSCGCIIGKGGSKIRSFVE 155
Query: 171 SSGATIVILAPNQ---LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
S A I + NQ LP C +DR + I+G + VL A+ + L E+P +
Sbjct: 156 DSQADIKL--SNQDRMLPGC-----NDRTLTITGTIDCVLRAVALVATTLCEDPAYATL- 207
Query: 228 ISPAYNYSAIRP-----------AQPFVEPTSADY-----------VTFEMLISESLVGG 265
+ YS P + F T Y + + I +SL+G
Sbjct: 208 VHRQSTYSVQSPLSLQGGGGGRRSGEFNRATPRRYGAGQGGGRDDETSILVTIPDSLIGA 267
Query: 266 LIGRCGSNISRIRNESGAMIKV------YGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
++GR G I+ ++ SG IKV + G ++R + GSA+ V +A Y+
Sbjct: 268 VLGRGGRTIAEVQVASGCRIKVSDRDDFFEGT---RNRKVVISGSAEGVQMAN-----YL 319
Query: 320 YSQLIQQAGAQ 330
+Q + AQ
Sbjct: 320 LTQKLSAITAQ 330
>gi|19075184|ref|NP_587684.1| RNA-binding protein [Schizosaccharomyces pombe 972h-]
gi|74626925|sp|O74919.1|RNC1_SCHPO RecName: Full=RNA-binding protein rnc1; AltName: Full=RNA-binding
protein that suppresses calcineurin deletion 1
gi|3702642|emb|CAA21234.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces pombe]
Length = 398
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 77/322 (23%)
Query: 14 SVVTEPEPRHDV---SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGH 70
S+ +PEP V S K +D Q + R ++ +R+ G +IGK G
Sbjct: 64 SMTNQPEPTSQVPPISAKPPMDDATY---------ATQQLTLRALLSTREAGIIIGKAGK 114
Query: 71 RIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNS 130
+ ++R T + A+ +RV+ IS +NVV + A D + S
Sbjct: 115 NVAELRSTTNVKAGVTKAVPNVHDRVLTISGP-LENVVRAYRFIIDIFAKNSTNPDGTPS 173
Query: 131 EASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
+A+ +RLLIA S G +IG +G I KL + +I + + LP
Sbjct: 174 DAN-------TPRKLRLLIAHSLMGSIIGRNGLRI-KLIQDKCSCRMIASKDMLP----- 220
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRE-----------NP----------------PR 223
++R V+I G V + A+ EIG L + NP P+
Sbjct: 221 QSTERTVEIHGTVDNLHAAIWEIGKCLIDDWERGAGTVFYNPVSRLTQPLPSLASTASPQ 280
Query: 224 QVISISPA---------------YNYSA-IRPA--QPFVEPTSADYVTFEMLISESLVGG 265
QV SP +Y A + PA PF++ VT + I +VG
Sbjct: 281 QV---SPPAAPSTTSGEAIPENFVSYGAQVFPATQMPFLQ---QPKVTQNISIPADMVGC 334
Query: 266 LIGRCGSNISRIRNESGAMIKV 287
+IGR GS IS IR SG+ I +
Sbjct: 335 IIGRGGSKISEIRRTSGSKISI 356
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 31/190 (16%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
T+R L++ +AG +IG +G+N+ +LR+++ A + PN H DRV+ ISG
Sbjct: 95 TLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPN-------VH--DRVLTISG 145
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYV-TFEMLISE 260
+ V+ A R +I I A P P+ A+ +LI+
Sbjct: 146 PLENVVRAY------------RFIIDIF------AKNSTNPDGTPSDANTPRKLRLLIAH 187
Query: 261 SLVGGLIGRCGSNISRIRNE-SGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYI 319
SL+G +IGR G I I+++ S MI + R ++ G+ + A + + +
Sbjct: 188 SLMGSIIGRNGLRIKLIQDKCSCRMIASKDMLPQSTERTVEIHGTVDNLHAAIWEIGKCL 247
Query: 320 YSQLIQQAGA 329
+ AG
Sbjct: 248 IDDWERGAGT 257
>gi|425769369|gb|EKV07864.1| hypothetical protein PDIP_71440 [Penicillium digitatum Pd1]
gi|425770994|gb|EKV09451.1| hypothetical protein PDIG_62050 [Penicillium digitatum PHI26]
Length = 364
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 129/329 (39%), Gaps = 75/329 (22%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVV 108
++ R IV S++ G +IGK G + +R+ET ++ + +RV+ ++ + +
Sbjct: 44 ELTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGQ-----L 98
Query: 109 SDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLLIAGSQAGCLIGMSGQN 164
A +A +L+ A ++ G + +N IRLLI+ +Q G +IG G
Sbjct: 99 RSLARAYAIVAKGLLEG------APQMGMGGIVSNNGTHPIRLLISHNQMGTIIGRQGLK 152
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGN--------- 215
I+ ++++SG +V LP ++R+V++ G + A+ EIG
Sbjct: 153 IKHIQDASGVRMVA-QKEMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCLLDDWQRG 206
Query: 216 ------------------QLRENPP-----------RQVISISPAYNYS----------- 235
L NPP RQ ++S
Sbjct: 207 TGTVLYNPAVRASLSGSQPLNSNPPAGNGYQNNANSRQYNRTGNGADFSDGSYNRRSNSD 266
Query: 236 AIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGG-KGEQ 294
A P V + T + I +VG +IGR G+ I+ IR SGA I + E
Sbjct: 267 AGNRGYPQVTEDGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDET 326
Query: 295 KHRHIQFGGSAQQVALAKQRVDEYIYSQL 323
R GSAQ A ++ +Y L
Sbjct: 327 GERMFTIMGSAQ----ANEKALYLLYENL 351
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVV 197
VA T+R +++ +AG +IG +G+N+ LR+ +G A + + P H DRV+
Sbjct: 42 VAELTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVP-------GVH--DRVL 92
Query: 198 QISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEML 257
++G + ++ A + L E P+ + + + + P +L
Sbjct: 93 TVTGQLRSLARAYAIVAKGLLEGAPQ--MGMGGIVSNNGTHP--------------IRLL 136
Query: 258 ISESLVGGLIGRCGSNISRIRNESG 282
IS + +G +IGR G I I++ SG
Sbjct: 137 ISHNQMGTIIGRQGLKIKHIQDASG 161
>gi|218184511|gb|EEC66938.1| hypothetical protein OsI_33565 [Oryza sativa Indica Group]
Length = 800
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK-IADAIARHEERVIIISSKDNDNVVS 109
+FR+++P+ ++G VIG G R++++ EETKA ++ I A E VII + + D
Sbjct: 241 VFRMLIPATKVGAVIGHSGERLRRLCEETKACVRVIGGHFAAAERAVIIFAKEQPDEPKP 300
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A +AL ++ + DD + + + R+L QA LIG G I ++
Sbjct: 301 PAIDALLRVYECTINDDGLDVRYNNIVVA-------RILTPSEQAASLIGDQGSVINYIK 353
Query: 170 NSSGATIVIL 179
+S I ++
Sbjct: 354 KASKTNIHVI 363
>gi|410922719|ref|XP_003974830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Takifugu
rubripes]
Length = 434
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 32/239 (13%)
Query: 26 SGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI 85
+GKR ED + + S + R + V RI++ S+ G VIGK G I+ +R + KA++ +
Sbjct: 19 NGKRPAEDADEQKSFKRSRNCDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYKASVSV 78
Query: 86 ADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTI 145
D+ ER++ IS+ ++ + E L+ I L E + +G +
Sbjct: 79 PDSSG--PERILSISA----DIKTVGEILLKIIPTL---------EEYQQYSGMDFDCEL 123
Query: 146 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPA 205
RLLI S AG +IG+ G I++LR ++ +I + C + +DRVV + G +
Sbjct: 124 RLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQ----ECCPQS--TDRVVLVGGKMER 177
Query: 206 VLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
V+ + + ++I+ +P + +P P + +Y F ++ E + G
Sbjct: 178 VVECIKTM---------LELIADAPIKGRA--QPYDPNFYDETYEYGGFTVMFEERVGG 225
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V ++ +P G +IGK G RI++IR ++ A IKI + + E+R+I I+ + +
Sbjct: 359 VTTQVTIPKDLAGSIIGKGGQRIKQIRHDSGAAIKIDEPLEGSEDRIITITG--TQDQIQ 416
Query: 110 DAENALQQIAALILKDDD 127
+A+ LQ +L D
Sbjct: 417 NAQFLLQSSVLHLLGHKD 434
>gi|449514357|ref|XP_002192510.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Taeniopygia
guttata]
Length = 434
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 14 ETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASV 73
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ IS +D E + ILK E + G
Sbjct: 74 SVPDSSG--PERILSIS--------ADIETIGE-----ILKKIIPTLEEYQHYKGSDFDC 118
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ TI + H +DRVV I G
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHSTDRVVLIGGKP 172
Query: 204 PAVLNAL 210
V+ +
Sbjct: 173 DRVVECI 179
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 361 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 420
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 421 LQNSVKQYA 429
>gi|74208425|dbj|BAE26399.1| unnamed protein product [Mus musculus]
Length = 575
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D D NS + LLI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDMDGNSTIQE------------LLIPASKVGLVIGKGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK--------- 235
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
++ +R F + A + E+ + +VG +IGR G I +I+N++G I+
Sbjct: 236 DQADFRGVR--SDFT--SRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A ++E I +
Sbjct: 292 DDGISPERAAQVMGPPDRCQHAAPIINELILT 323
>gi|79550843|ref|NP_178410.2| putative RNA-binding protein [Arabidopsis thaliana]
gi|45752620|gb|AAS76208.1| At2g03110 [Arabidopsis thaliana]
gi|46359791|gb|AAS88759.1| At2g03110 [Arabidopsis thaliana]
gi|330250570|gb|AEC05664.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 153
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 83 IKIADAIARHEERVIIISSK---------DNDNVVSDAENALQQIAALILKDDDSNSEAS 133
+++ +A+ +ERV+ I S DN++ V A +AL ++ +++ ++ + +
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 134 KV----AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCAS 189
+ G T+R+L+ Q G LIG G I+ LRN + A I + N LP+CA
Sbjct: 61 NDNDEYSEGQTVV-TVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDN-LPMCAL 118
Query: 190 AHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
A D ++QI GD AV AL ++ L NP R
Sbjct: 119 ALSHDELLQIIGDPSAVREALYQVAFLLYNNPSR 152
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD------AIA-RHEERVIIISSK 102
V R++VPS QIG +IGK G IQ +R +T A I++ + A+A H+E + II
Sbjct: 73 VTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCALALSHDELLQIIGDP 132
Query: 103 DNDNVVSDAENALQQIAALILKD 125
S AL Q+A L+ +
Sbjct: 133 ------SAVREALYQVAFLLYNN 149
>gi|410897014|ref|XP_003961994.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Takifugu rubripes]
Length = 607
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 124/299 (41%), Gaps = 77/299 (25%)
Query: 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKI--ADAIARHEERVIIISS 101
R QD+ RIIVP++ +G +IGKEG I+ + ++T++ + I + E+ + I S+
Sbjct: 193 RTTQQDL--RIIVPTQYVGAIIGKEGLTIKNVTKQTQSKVDIHRKENAGAAEKPITIHST 250
Query: 102 KDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMS 161
+ A + I ++ K+ + + ++++ + + G LIG
Sbjct: 251 PEG------CSAACRMIMEIMQKEANETKAMEDIP--------LKIIASNNYIGRLIGKQ 296
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+N++K+ +G I I + L + + ++R + + G + A NA VEI +LRE
Sbjct: 297 GRNLKKIEEETGTKITISSLQDL----NIYNNERTITVKGSLEACCNAEVEIMKKLREAY 352
Query: 222 PRQVISIS------PAYNYSAI----------------RPAQPFVEPTSADYVTF----- 254
+ +I+ P N +A+ R P V P A Y F
Sbjct: 353 ENDIAAINQQTSLIPGLNLNALGIFSSTLPVLSPAAGPRSTMPPVGP--AGYNPFLGHSS 410
Query: 255 --------------------------EMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ I VG LIG+ G +I ++ + +GA IKV
Sbjct: 411 HLSSLYGVPPASAIPHQHAAQEQEVAYLFIPTQAVGALIGKKGQHIKQLAHFAGASIKV 469
>gi|440636503|gb|ELR06422.1| hypothetical protein GMDG_02138 [Geomyces destructans 20631-21]
Length = 365
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 129/322 (40%), Gaps = 68/322 (21%)
Query: 16 VTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKI 75
V + R +V G+R DGE + A AQ + R IV S++ G +IGK G + +
Sbjct: 15 VVDAMDRLNVDGERLGPDGEPAPKTEEDYAIAQ-LTLRAIVSSKEAGVIIGKAGKNVADL 73
Query: 76 REETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKV 135
R+ET ++ + +R++ I+ DA + I A L + A +
Sbjct: 74 RDETGVKAGVSKVVQGVHDRILTITGG------CDAISKAYAIVAKALLEG-----APMM 122
Query: 136 AAGHVAANT----IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAH 191
G + + T I+LLI+ +Q G +IG G I+ ++++SG +V LP
Sbjct: 123 GMGGLVSTTGTHPIKLLISHNQMGTIIGRQGLKIKHIQDASGVRMV-AQKEMLP-----Q 176
Query: 192 ESDRVVQISGDVPAVLNALVE--------------------------------IGNQLRE 219
++R+V++ G + A+ E I N+ RE
Sbjct: 177 STERIVEVQGTPEGIQKAIWEMCKCLIDDWERGTGTVLYNPVVRTQTGGGQGGIRNEGRE 236
Query: 220 NPPRQVISISPAYNYSAIRP--------------AQPFVEPTSADYVTFEMLISESLVGG 265
+V+ ++S P P + + T + I +VG
Sbjct: 237 YSSPRVMRTGNGADFSQEAPRTFNRRSDGETAGRGVPTHDENGEEIQTQNISIPSDMVGC 296
Query: 266 LIGRCGSNISRIRNESGAMIKV 287
+IGR GS IS IR SGA I +
Sbjct: 297 IIGRGGSKISEIRKTSGARISI 318
>gi|17550876|ref|NP_510825.1| Protein C36E6.1, isoform b [Caenorhabditis elegans]
gi|351059040|emb|CCD66899.1| Protein C36E6.1, isoform b [Caenorhabditis elegans]
Length = 641
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 39/241 (16%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA--DAIARHEERVIIISSKDNDNV 107
+ I +P+ + G +IGK G +++K+R T +++ + IA + + I
Sbjct: 157 ITIEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTVKPLKITGDP----- 211
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
E +A ++ +DD+ + A G VA ++++ + G ++G+ G+NI+K
Sbjct: 212 -KQVEQCRLLVADILACNDDTPASAMMAGNGPVATMSLQVKVPRCTVGAIMGLQGKNIKK 270
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN-ALVEIGNQLRENPPRQVI 226
L + +G I L D P ++ +L IGN+ + Q+I
Sbjct: 271 LSDETGTKIQFL--------------------PDDDPKLMERSLAIIGNKNKVYVCAQLI 310
Query: 227 SISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIK 286
N A +A V F M+I S G +IGR G I +I ESGA +
Sbjct: 311 KAIVEANSEA----------ANAPVVLFYMVIPASKCGLVIGRGGETIKQINQESGAHCE 360
Query: 287 V 287
+
Sbjct: 361 L 361
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 118/295 (40%), Gaps = 41/295 (13%)
Query: 13 VSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFR-----------IIVPSRQI 61
VS T P R D+ D E E P + +D R + VP + +
Sbjct: 8 VSSSTHPSSRRDIDDLSDGSD-EYEAVPPPYKRPREDTDHRMDQNGLIVKVAVPVPEQCV 66
Query: 62 GKVIGKEGHRIQKIREETKATIKIADAIARHEERVI-IISSKDN--------DNVVSDAE 112
G VIG+ G +Q I +++ +++ + R++ I +N VV+
Sbjct: 67 GLVIGRNGAEVQAISQKSGCRVQVTVQPSSTGFRLVEIYGIPENIERAKAYISEVVTRGT 126
Query: 113 NALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS 172
+ ++ ++ V G + TI + I ++ G +IG G+ + KLR+ +
Sbjct: 127 RQPGPLCQPVVHVQTHGIKSPVVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWT 186
Query: 173 GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAY 232
+ +L N + ++ + ++I+GD V + + + L N +PA
Sbjct: 187 NCNVQLLQDNNI------ADTVKPLKITGDPKQVEQCRLLVADILACN------DDTPA- 233
Query: 233 NYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
SA+ V S ++ + VG ++G G NI ++ +E+G I+
Sbjct: 234 --SAMMAGNGPVATMS-----LQVKVPRCTVGAIMGLQGKNIKKLSDETGTKIQF 281
>gi|124359391|gb|ABN05855.1| KH, type 1 [Medicago truncatula]
Length = 222
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 25/204 (12%)
Query: 12 TVSVVTEPEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHR 71
+++ + +P P + S KR + + P A V FR++ S +IG VIGK G
Sbjct: 13 SITGLPDPNPFPNGSSKRAKPSKPPQQPLP---IPAGHVAFRLLCNSSRIGGVIGKSGTV 69
Query: 72 IQKIREETKATIKIADAIARHEERVIII--------------SSKDNDNV-VSDAENALQ 116
I+ ++ T A I+I D+ +RVI++ S D + + VS A+ AL
Sbjct: 70 IKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGKVMVRSHSGDGEAIEVSKAQEALL 129
Query: 117 QIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATI 176
++ IL + +E + G + RL+ +QAG +IG G+ +EK++ +G I
Sbjct: 130 RVFDRIL---EVAAEMEGIELGDRTV-SCRLVADSAQAGSVIGKGGKVVEKIKKDTGCKI 185
Query: 177 VILAPNQLPLCASAHESDRVVQIS 200
+ N LP C S+ D V++ S
Sbjct: 186 WVCKDN-LPACISS--PDEVIECS 206
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 239 PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRH 298
P QP P A +V F +L + S +GG+IG+ G+ I ++ +GA I++ E R
Sbjct: 37 PQQPL--PIPAGHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRV 94
Query: 299 IQFGGSAQ 306
I G++
Sbjct: 95 IMVIGASN 102
>gi|332833136|ref|XP_520317.3| PREDICTED: far upstream element-binding protein 3 [Pan troglodytes]
gi|397503629|ref|XP_003822422.1| PREDICTED: far upstream element-binding protein 3 [Pan paniscus]
gi|410219718|gb|JAA07078.1| far upstream element (FUSE) binding protein 3 [Pan troglodytes]
gi|410292988|gb|JAA25094.1| far upstream element (FUSE) binding protein 3 [Pan troglodytes]
gi|410350985|gb|JAA42096.1| far upstream element (FUSE) binding protein 3 [Pan troglodytes]
Length = 572
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D DSNS ++ LI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDIDSNSTIQEI------------LIPASKVGLVIGRGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE +
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVR 244
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+N + + E+ + VG +IGR G I +I+N++G I+
Sbjct: 245 GDFN-------------SRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A + E I +
Sbjct: 292 DDGISPERAAQVMGPPDRCQHAAHIISELILT 323
>gi|100816392|ref|NP_003925.1| far upstream element-binding protein 3 [Homo sapiens]
gi|297685554|ref|XP_002820351.1| PREDICTED: far upstream element-binding protein 3 [Pongo abelii]
gi|37078499|sp|Q96I24.2|FUBP3_HUMAN RecName: Full=Far upstream element-binding protein 3;
Short=FUSE-binding protein 3
gi|119608343|gb|EAW87937.1| hCG31253, isoform CRA_a [Homo sapiens]
gi|119608344|gb|EAW87938.1| hCG31253, isoform CRA_a [Homo sapiens]
gi|187950609|gb|AAI37339.1| Far upstream element (FUSE) binding protein 3 [Homo sapiens]
gi|187951661|gb|AAI37341.1| Far upstream element (FUSE) binding protein 3 [Homo sapiens]
gi|194379238|dbj|BAG58170.1| unnamed protein product [Homo sapiens]
Length = 572
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D DSNS ++ LI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDIDSNSTIQEI------------LIPASKVGLVIGRGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE +
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVR 244
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+N + + E+ + VG +IGR G I +I+N++G I+
Sbjct: 245 GDFN-------------SRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A + E I +
Sbjct: 292 DDGISPERAAQVMGPPDRCQHAAHIISELILT 323
>gi|45384194|ref|NP_990402.1| insulin-like growth factor 2 mRNA-binding protein 1 [Gallus gallus]
gi|82227598|sp|O42254.1|IF2B1_CHICK RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 1;
Short=IGF2 mRNA-binding protein 1; Short=IMP-1; AltName:
Full=IGF-II mRNA-binding protein 1; AltName: Full=VICKZ
family member 1; AltName: Full=Zip code-binding protein
1; Short=ZBP-1; Short=Zipcode-binding protein 1
gi|2570921|gb|AAB82295.1| zipcode-binding protein [Gallus gallus]
Length = 576
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 41/263 (15%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNV 107
D+ R++VP++ +G +IGKEG I+ I ++T++ I + A E+ I I S
Sbjct: 195 DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHSTP---- 250
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A + I ++ K+ A +V +++L + G LIG G+N++K
Sbjct: 251 -EGCSAACKMILEIMQKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKK 301
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+ + I I + L L + +R + + G + A EI ++RE V +
Sbjct: 302 VEQDTETKITISSLQDLTL----YNPERTITVKGSIENCCKAEQEIMKKVREAYENDVAA 357
Query: 228 IS------PAYNYSAIR---------PAQPFVEPTSADYVTF--------EMLISESLVG 264
+S P N +A+ P P +A Y +F + I VG
Sbjct: 358 MSLQSHLIPGLNLAAVGLFPASSNAVPPPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVG 417
Query: 265 GLIGRCGSNISRIRNESGAMIKV 287
+IG+ G +I ++ + A IK+
Sbjct: 418 AIIGKKGQHIKQLSRFASASIKI 440
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 115/288 (39%), Gaps = 62/288 (21%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIAR 91
EI + K A +V +I+ + +G++IGKEG ++K+ ++T+ I I+ D
Sbjct: 262 EIMQKEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLY 321
Query: 92 HEERVIIIS-------------------SKDNDNVVSDAENAL---QQIAALILKDDDSN 129
+ ER I + + +ND ++ L +AA+ L SN
Sbjct: 322 NPERTITVKGSIENCCKAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAAVGLFPASSN 381
Query: 130 SEASKVAAGHVAA----------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
+ ++ AA T+ + I G +IG GQ+I++L + A+I I
Sbjct: 382 AVPPPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI- 440
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AP + P R+V I+G A A I +L+E
Sbjct: 441 APPETP-----DSKVRMVVITGPPEAQFKAQGRIYGKLKE-------------------- 475
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 476 -ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 522
>gi|402896286|ref|XP_003911235.1| PREDICTED: far upstream element-binding protein 3 [Papio anubis]
Length = 572
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D DSNS ++ LI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDIDSNSTIQEI------------LIPASKVGLVIGRGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE +
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVR 244
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+N + + E+ + VG +IGR G I +I+N++G I+
Sbjct: 245 GDFN-------------SRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A + E I +
Sbjct: 292 DDGISPERAAQVMGPPDRCQHAAHIISELILT 323
>gi|327275834|ref|XP_003222677.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Anolis carolinensis]
Length = 576
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 41/263 (15%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNV 107
D+ R++VP++ +G +IGKEG I+ I ++T++ I + A E+ I I S
Sbjct: 195 DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHSTP---- 250
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A + I ++ K+ A +V +++L + G LIG G+N++K
Sbjct: 251 -EGCSAACKMILEIMQKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKK 301
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+ + I I + L L + +R + + G + A EI ++RE V +
Sbjct: 302 VEQDTETKITISSLQDLTL----YNPERTITVKGSIENCCRAEQEIMKKVREAYENDVAA 357
Query: 228 IS------PAYNYSAIR---------PAQPFVEPTSADYVTF--------EMLISESLVG 264
+S P N +A+ P P +A Y +F + I VG
Sbjct: 358 MSLQSHLIPGLNLAAVGLFPASSNAVPPPPSSVSGAAPYSSFLPPEQETVHVFIPAQAVG 417
Query: 265 GLIGRCGSNISRIRNESGAMIKV 287
+IG+ G +I ++ + A IK+
Sbjct: 418 AIIGKKGQHIKQLSRFASASIKI 440
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 115/288 (39%), Gaps = 62/288 (21%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIAR 91
EI + K A +V +I+ + +G++IGKEG ++K+ ++T+ I I+ D
Sbjct: 262 EIMQKEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLY 321
Query: 92 HEERVIIIS-------------------SKDNDNVVSDAENAL---QQIAALILKDDDSN 129
+ ER I + + +ND ++ L +AA+ L SN
Sbjct: 322 NPERTITVKGSIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAAVGLFPASSN 381
Query: 130 SEASKVAAGHVAA----------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
+ ++ AA T+ + I G +IG GQ+I++L + A+I I
Sbjct: 382 AVPPPPSSVSGAAPYSSFLPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI- 440
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AP + P R+V I+G A A I +L+E
Sbjct: 441 APAETP-----DSKVRMVIITGPPEAQFKAQGRIYGKLKE-------------------- 475
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 476 -ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 522
>gi|326934067|ref|XP_003213117.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Meleagris gallopavo]
Length = 553
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 41/263 (15%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNV 107
D+ R++VP++ +G +IGKEG I+ I ++T++ I + A E+ I I S
Sbjct: 172 DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHSTPE--- 228
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A + I ++ K+ A +V +++L + G LIG G+N++K
Sbjct: 229 --GCSAACKMILEIMQKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKK 278
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+ + I I + L L + +R + + G + A EI ++RE V +
Sbjct: 279 VEQDTETKITISSLQDLTL----YNPERTITVKGSIENCCKAEQEIMKKVREAYENDVAA 334
Query: 228 IS------PAYNYSAIR---------PAQPFVEPTSADYVTF--------EMLISESLVG 264
+S P N +A+ P P +A Y +F + I VG
Sbjct: 335 MSLQSHLIPGLNLAAVGLFPASSNAVPPPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVG 394
Query: 265 GLIGRCGSNISRIRNESGAMIKV 287
+IG+ G +I ++ + A IK+
Sbjct: 395 AIIGKKGQHIKQLSRFASASIKI 417
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 115/288 (39%), Gaps = 62/288 (21%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIAR 91
EI + K A +V +I+ + +G++IGKEG ++K+ ++T+ I I+ D
Sbjct: 239 EIMQKEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLY 298
Query: 92 HEERVIIIS-------------------SKDNDNVVSDAENAL---QQIAALILKDDDSN 129
+ ER I + + +ND ++ L +AA+ L SN
Sbjct: 299 NPERTITVKGSIENCCKAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAAVGLFPASSN 358
Query: 130 SEASKVAAGHVAA----------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179
+ ++ AA T+ + I G +IG GQ+I++L + A+I I
Sbjct: 359 AVPPPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI- 417
Query: 180 APNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRP 239
AP + P R+V I+G A A I +L+E
Sbjct: 418 APPETP-----DSKVRMVVITGPPEAQFKAQGRIYGKLKE-------------------- 452
Query: 240 AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 453 -ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 499
>gi|328716031|ref|XP_001944817.2| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 415
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 32/200 (16%)
Query: 49 DVLFRI-IVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNV 107
DV+ I I+ ++I +IG+ G ++ +R +++ATI I D+ ER++ ++ N+
Sbjct: 18 DVVLTIRILMGKEILPLIGEYGEVVRDLRNQSEATITITDS--STPERIVTVTG----NI 71
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN---TIRLLIAGSQAGCLIGMSGQN 164
N +Q+ ALI K + NS + ++N TI+L++ SQ G LIG G
Sbjct: 72 -----NIIQKAFALITKILEQNSPTHLQNSRKPSSNNSTTIKLIVPASQCGSLIGKGGVK 126
Query: 165 IEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQ 224
I ++R +SGA +V +A + L + ++R V ISG A+ A+ +I + E P R
Sbjct: 127 IREIREASGA-MVNVASDLL-----QNSTERTVSISGTAEAITEAIHQICIVMLETPGR- 179
Query: 225 VISISPAYNYSAIRPAQPFV 244
P Y +PFV
Sbjct: 180 ----GPTVAY------RPFV 189
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
TIR+L+ G + LIG G+ + LRN S ATI I + +R+V ++G++
Sbjct: 22 TIRILM-GKEILPLIGEYGEVVRDLRNQSEATITI---------TDSSTPERIVTVTGNI 71
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLV 263
+ A I L +N P + Q +P+S + T ++++ S
Sbjct: 72 NIIQKAFALITKILEQNSPTHL---------------QNSRKPSSNNSTTIKLIVPASQC 116
Query: 264 GGLIGRCGSNISRIRNESGAMIKVYGGKGEQK-HRHIQFGGSAQQVALAKQRV 315
G LIG+ G I IR SGAM+ V + R + G+A+ + A ++
Sbjct: 117 GSLIGKGGVKIREIREASGAMVNVASDLLQNSTERTVSISGTAEAITEAIHQI 169
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 120/279 (43%), Gaps = 56/279 (20%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVVSD 110
++IVP+ Q G +IGK G +I++IRE + A + +A D + ER + IS
Sbjct: 107 IKLIVPASQCGSLIGKGGVKIREIREASGAMVNVASDLLQNSTERTVSISG-----TAEA 161
Query: 111 AENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIG---MSGQNIEK 167
A+ QI ++L ++ VA + +++ G QA L G + +
Sbjct: 162 ITEAIHQICIVML---ETPGRGPTVAYRPFVSQPGPVVLCGGQAYTLQGSLAIPAVGDQT 218
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
N++ TI +APN ++ SG P+VL AL G+QLR
Sbjct: 219 ASNAALNTIASIAPN-------------LIAGSGLDPSVLAALA--GSQLR--------- 254
Query: 228 ISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
TS ++T EM I ++G +IG+ G+ I+ IR SGAMI++
Sbjct: 255 ------------GGGVSSKTSQQHITHEMAIPNDIIGCIIGKGGTKIAEIRRISGAMIRI 302
Query: 288 YGGKGEQK----HRHIQFGGSAQQVALAKQ----RVDEY 318
+ + R I G A V +AK VD+Y
Sbjct: 303 SNTEEHEASGKMERAITISGQADAVNVAKTLINLSVDQY 341
>gi|255725734|ref|XP_002547796.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135687|gb|EER35241.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 379
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 124/282 (43%), Gaps = 35/282 (12%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
+R++V +++ G +IG G I IR ET I+ + ER++ +S K + D
Sbjct: 101 YRVLVSAKEAGCLIGTNGQVIDSIRGETNTKAGISRLVPGSHERILTVSGK-----LDDC 155
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANT-----IRLLIAGSQAGCLIGMSGQNIE 166
AL A ++ + + + NT +RLLI +Q G LIG G I+
Sbjct: 156 AKALSYFAQALVNANIESYNYFPLKQLSSTPNTEETTILRLLIPNTQMGTLIGSKGARIQ 215
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN------ 220
++++ ++ I + + LP ++R+V++ G V + ++L I L E+
Sbjct: 216 QIQSKYNISM-IASKSFLP-----GSNERLVELQGSVDDLYDSLRVISRCLMEDFSSIVG 269
Query: 221 ----PPR---QVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSN 273
PR + S + + + + T +TF +VG LIG+ G+
Sbjct: 270 VSYYVPRGSNSSNNNSNSSSSTGGLSSGSGGTNTKKATLTFP----NDIVGALIGKQGAR 325
Query: 274 ISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRV 315
I+ +R +GA I + G + R GS+Q V AKQ +
Sbjct: 326 INGVRKITGATISI--SDGGEDERIFTITGSSQAVEKAKQMI 365
>gi|209148569|gb|ACI32944.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 443
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 24 DVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
+ +GKR ED + E S + R V RI++ S+ G VIGK G I+ +R + A++
Sbjct: 18 ETNGKRPAEDADEEQSYKRSRNTEDMVELRILLQSKNAGAVIGKGGKNIKSLRTDFNASV 77
Query: 84 KIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN 143
+ D+ ER++ I ++ ++ + ++LK + E + G
Sbjct: 78 SVPDSSG--PERILSIGAE------------IETVGDILLKIIPTLEEYQQY-NGMDFDC 122
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDV 203
+RLLI S AG +IG+ G I++LR ++ I + C + +DRVV +SG
Sbjct: 123 ELRLLIHQSLAGSIIGVKGAKIKELRENTQTNIKLFQ----ECCPQS--TDRVVLVSGKS 176
Query: 204 PAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + + + + E P + +P P + DY F ++ E
Sbjct: 177 ERVVECIKIMLDLIAEAPIK-----------GRTQPYDPNFYDETYDYGGFTVMFEE 222
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ ++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I IS + +
Sbjct: 368 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQ--IQ 425
Query: 110 DAENALQQIAALILKDDD 127
+A+ LQ A +L D
Sbjct: 426 NAQYLLQNSALHLLGHQD 443
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 126 DDSNSEASKVAAGHVAAN-------TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
D+S+S S + G + N T ++ I AG +IG GQ I+++R+ SGA+I I
Sbjct: 344 DNSSSWNSYQSGGRASYNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 403
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
PL S DR++ ISG + NA
Sbjct: 404 ----DEPLEGS---EDRIITISGTQDQIQNA 427
>gi|1575609|gb|AAC50893.1| FUSE binding protein 3, partial [Homo sapiens]
Length = 600
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 112 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 169
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D DSNS ++ LI S+ G +IG G+ I++L+
Sbjct: 170 GQIVDRCRNGPGFHNDIDSNSTIQEI------------LIPASKVGLVIGRGGETIKQLQ 217
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE +
Sbjct: 218 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVR 272
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+N + + E+ + VG +IGR G I +I+N++G I+
Sbjct: 273 GDFN-------------SRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 319
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A + E I +
Sbjct: 320 DDGISPERAAQVMGPPDRCQHAAHIISELILT 351
>gi|359324034|ref|XP_003640270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Canis lupus familiaris]
Length = 466
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GK ED E E + + R + V RI++ S+ G VIGK G I+ + + A++ +
Sbjct: 20 GKCPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHPTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ L A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALHTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 62 GKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
G +IGK G RI+++R E+ A+IKI + + E+RVI I+
Sbjct: 400 GSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITIT 438
>gi|449551271|gb|EMD42235.1| hypothetical protein CERSUDRAFT_110766 [Ceriporiopsis subvermispora
B]
Length = 324
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 34/258 (13%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
+ R +V ++ G +IGK G + +R+ T ++ I ERV+ +S V
Sbjct: 28 LTLRALVSTKDAGVIIGKAGKNVADLRDHTGVKAGVSKVIPGVHERVLTVSGS-----VE 82
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
A I + ++ + S+ + V + A IRLLI+ + G +IG +G I+ ++
Sbjct: 83 GVAKAYALIVSQLVAANPSSPVSPTVPSQQTA---IRLLISHNLMGSVIGRNGLKIKAIQ 139
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV--IS 227
++SGA +V + + LP ++R+V++ G ++ A+ EIG L E+ R + +
Sbjct: 140 DASGARMV-ASKDMLP-----QSTERIVEVQGASDSIGRAIEEIGRCLLEDWERGLGTVL 193
Query: 228 ISPAYNYSAIRPAQPFVEPTSAD------------------YVTFEMLISESLVGGLIGR 269
P R + T+ D T + I +VG +IGR
Sbjct: 194 FHPGSGEDRSRRSGNSGRRTNGDVRGRTSPSPHSPSSQPTNLRTQNISIPSDMVGCIIGR 253
Query: 270 CGSNISRIRNESGAMIKV 287
G+ I+ IR SG+ I +
Sbjct: 254 NGTKITEIRRLSGSKISI 271
>gi|154295229|ref|XP_001548051.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347829292|emb|CCD44989.1| similar to KH domain RNA-binding protein [Botryotinia fuckeliana]
Length = 371
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 122/309 (39%), Gaps = 72/309 (23%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DGE + A++Q + R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 34 DGEPLPKTDEEYAESQ-LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGV 92
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLL 148
+RV+ IS A +A +L+ A ++ G V +N I+LL
Sbjct: 93 HDRVLTISGG-----CDSISRAYSIVAKALLEG------APQMGMGGVVSNNGTHPIKLL 141
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I+ ++++SG +V LP ++R+V++ G+ +
Sbjct: 142 ISHNQMGTIIGRQGLKIKHIQDASGVRMVA-QKEMLP-----QSTERIVEVQGNPEGIQK 195
Query: 209 ALVEI------------------------------------GNQLRENPPRQVISISPAY 232
A+ EI G RE +V+
Sbjct: 196 AIWEICKCLVDDWARGTGTVLYNPMVRTQTGNSGGMSQGNVGGTGREYGSSRVMRTGNGA 255
Query: 233 NYSAIRP--------------AQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIR 278
++S P P + + T + I +VG +IGR GS IS IR
Sbjct: 256 DFSESAPRSYNRRSESDAAQRGPPTHDENGEELQTQNISIPADMVGCIIGRAGSKISEIR 315
Query: 279 NESGAMIKV 287
SGA I +
Sbjct: 316 KTSGARISI 324
>gi|432101641|gb|ELK29690.1| RNA-binding protein Nova-2 [Myotis davidii]
Length = 294
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 39/256 (15%)
Query: 43 RRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERVIII 99
R A+ + ++++PS G +IGK G I ++++ET ATIK++ D ERV ++
Sbjct: 34 RNAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLV 93
Query: 100 --SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCL 157
+++ + V S +++I + K + N + A +L++ S AG +
Sbjct: 94 QGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLI 153
Query: 158 IGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217
IG G ++ + SGA + + +Q P + E RVV +SG+ V A+ I +L
Sbjct: 154 IGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQVHKAVSAIVQKL 208
Query: 218 RENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRI 277
++++ I+ + E+LVG ++G+ G +
Sbjct: 209 AAESAKELVEIA----------------------------VPENLVGAILGKGGKTLVEY 240
Query: 278 RNESGAMIKVYGGKGE 293
+ +GA I++ KGE
Sbjct: 241 QELTGARIQI-SKKGE 255
>gi|17384400|emb|CAD13196.1| hnRNP-E2 protein copy b [Xenopus laevis]
Length = 251
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 48/241 (19%)
Query: 123 LKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPN 182
L++D S+S + A+ T+RL++ SQ G LIG G I+++R S+GA + + A +
Sbjct: 11 LEEDISSSMTNSTASSKPPV-TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGD 68
Query: 183 QLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVI-------SISP----- 230
LP + ++R + I+G +++ + +I + E+PP+ V S SP
Sbjct: 69 MLP-----NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAG 123
Query: 231 --AYN----YSAIRP---------AQPFVEP--------------TSADYVTFEMLISES 261
AY Y+ +P Q P SA + E+ I
Sbjct: 124 GQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHSGNTGFSGGIDASAQATSHELTIPND 183
Query: 262 LVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
L+G +IGR G+ I+ IR SGA IK+ R + GS ++LA+ ++ + S
Sbjct: 184 LIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLINVRLSS 243
Query: 322 Q 322
+
Sbjct: 244 E 244
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIIS 100
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER I I+
Sbjct: 30 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 81
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
A AQ + +P+ IG +IG++G +I +IR+ + A IKIA+ + +R + I+
Sbjct: 169 ASAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTIT 224
>gi|345566886|gb|EGX49826.1| hypothetical protein AOL_s00076g710 [Arthrobotrys oligospora ATCC
24927]
Length = 379
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 125/321 (38%), Gaps = 81/321 (25%)
Query: 32 EDGEIEGSDPKRRAK--AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88
+D E E +P R + AQ L R IV S++ G +IGK G + +R+ET ++
Sbjct: 28 QDREGEAGEPVRTDEDYAQSPLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV 87
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ +RV+ ++ + A +A ++ +S + + + +RLL
Sbjct: 88 VPGVHDRVLTVTGN-----LDGVAKAYAMVAQTLV-----DSPPGAIPTTPMGTHPVRLL 137
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I+ +++ SG +V LP ++R+V++ G +
Sbjct: 138 ISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQK-EMLP-----QSTERIVEVQGSADGIRQ 191
Query: 209 ALVEIGNQLRENPPRQVISI-----------------------------SPAYNYSAIRP 239
A+ EIG L ++ R +I P ++ RP
Sbjct: 192 AIWEIGKCLVDDWQRGTGTILYNPAVRSNTSHGTGSSPSVISNGGAGTSGPTDRFTNERP 251
Query: 240 ---------AQPFVEPTSA------------------------DYVTFEMLISESLVGGL 266
F EP+ + + T + I +VG +
Sbjct: 252 NRGPVRTGNGTDFSEPSPSFPRRGHSDSTSRASAPAPNTENGEELQTQNISIPADMVGCI 311
Query: 267 IGRCGSNISRIRNESGAMIKV 287
IGR GS IS IR SGA I +
Sbjct: 312 IGRGGSKISEIRKSSGARISI 332
>gi|332856422|ref|XP_524310.3| PREDICTED: RNA-binding protein Nova-2 [Pan troglodytes]
Length = 607
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 19 PEPRHDVSGKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
P P H G R G + S PK + + ++++PS G +IGK G I ++++E
Sbjct: 124 PRPCHPAHG---RSPGSV--SPPK--TEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKE 176
Query: 79 TKATIKIA---DAIARHEERVIII--SSKDNDNVVSDAENALQQIAALILKDDDSNSEAS 133
T ATIK++ D ERV ++ +++ + V S +++I + K + N
Sbjct: 177 TGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQP 236
Query: 134 KVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHES 193
+ A +L++ S AG +IG G ++ + SGA + + +Q P + E
Sbjct: 237 QTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE- 292
Query: 194 DRVVQISGDVPAVLNALVEIGNQLRENP 221
RVV +SG+ V A+ I +++E+P
Sbjct: 293 -RVVTVSGEPEQVHKAVSAIVQKVQEDP 319
>gi|392571215|gb|EIW64387.1| cytoplasmic protein [Trametes versicolor FP-101664 SS1]
Length = 325
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 35/262 (13%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
+ + R +V ++ G +IGK G + ++R++T ++ I ERV+ ++
Sbjct: 25 SDSLTLRALVSTKDAGVIIGKAGKNVAELRDQTGVKAGVSKVIPGVHERVLTVT-----G 79
Query: 107 VVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIE 166
V A I + ++ S+ S ++ A IRLLI+ + G +IG +G I+
Sbjct: 80 TVEGVAKAYSLIVSQLVSASPSSPTMSPTSSPTTA---IRLLISHNLMGSVIGRNGLKIK 136
Query: 167 KLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV- 225
+++SSGA +V + + LP ++R+V++ G ++ A+ EIG L E+ R V
Sbjct: 137 AIQDSSGARMV-ASKDMLP-----QSTERIVEVQGSSESIGRAIEEIGRCLLEDWERGVG 190
Query: 226 -ISISP-AYNYSAIRPAQPFVEPTSAD------------------YVTFEMLISESLVGG 265
+ P A + R P ++ D T + I +VG
Sbjct: 191 TVLFHPGAGEERSGRRTHPTNRRSNGDVRRTSPSPSSPSSSPPTNLRTQNISIPSDMVGC 250
Query: 266 LIGRCGSNISRIRNESGAMIKV 287
+IGR G+ I+ IR SG+ I +
Sbjct: 251 IIGRNGTKITEIRRLSGSKISI 272
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 29/195 (14%)
Query: 120 ALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIV 177
A + +D+DS ++ + + T+R L++ AG +IG +G+N+ +LR+ +G A +
Sbjct: 5 AAVPRDNDSAPQSRSSSPVGSDSLTLRALVSTKDAGVIIGKAGKNVAELRDQTGVKAGVS 64
Query: 178 ILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAI 237
+ P HE RV+ ++G V V A I +QL P + +AI
Sbjct: 65 KVIPG-------VHE--RVLTVTGTVEGVAKAYSLIVSQLVSASPSSPTMSPTSSPTTAI 115
Query: 238 RPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGA-MIKVYGGKGEQKH 296
R +LIS +L+G +IGR G I I++ SGA M+ +
Sbjct: 116 R-----------------LLISHNLMGSVIGRNGLKIKAIQDSSGARMVASKDMLPQSTE 158
Query: 297 RHIQFGGSAQQVALA 311
R ++ GS++ + A
Sbjct: 159 RIVEVQGSSESIGRA 173
>gi|359324036|ref|XP_003640271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Canis lupus familiaris]
Length = 464
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GK ED E E + + R + V RI++ S+ G VIGK G I+ + + A++ +
Sbjct: 20 GKCPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVP 79
Query: 87 DAIARHEERVIIISSKDN------DNVVSDAENALQ-----QIAALILKDDDSNSEASKV 135
D+ ER++ IS+ ++ E LQ + L L+ D +
Sbjct: 80 DSSG--PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQH 137
Query: 136 AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195
G +RLLI S AG +IG+ G I++LR ++ TI + H +DR
Sbjct: 138 YKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE------CCPHPTDR 191
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFE 255
VV I G V+ + I + + E+P + +P P + DY F
Sbjct: 192 VVLIGGKPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFT 240
Query: 256 MLISE 260
M+ +
Sbjct: 241 MMFDD 245
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ L A++ + + +R++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALHTDYNASVSV---------PDSSGPERILSISADIE 95
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 96 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 146
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 62 GKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSDAENALQQIA 119
G +IGK G RI+++R E+ A+IKI + + E+RVI I+ + N +N+++Q A
Sbjct: 400 GSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAPYLLQNSVKQYA 459
>gi|431898917|gb|ELK07287.1| Far upstream element-binding protein 3 [Pteropus alecto]
Length = 595
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 116/278 (41%), Gaps = 50/278 (17%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D D NS ++ LI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDIDGNSTVQEI------------LIPASKVGLVIGKGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK--------- 235
Query: 230 PAYNYSAIRPAQPFVEPTSADYV------TFEMLISESLVGGLIGRCGSNISRIRNESGA 283
++ IR +D+ + E+ + VG +IGR G I +I+N++G
Sbjct: 236 DQADFRGIR----------SDFTSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGV 285
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
I+ G R Q G + A ++E I +
Sbjct: 286 RIQFKPDDGISPERAAQVMGPPDRCQHAAHIINELILT 323
>gi|86129564|ref|NP_001034426.1| far upstream element-binding protein 3 [Rattus norvegicus]
gi|75270299|gb|ABA18725.1| MAP2 RNA trans-acting protein 2 [Rattus norvegicus]
Length = 569
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D D NS + LLI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDIDGNSTIQE------------LLIPASKVGLVIGKGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK--------- 235
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
++ +R F + A + E+ + +VG +IGR G I +I+N +G I+
Sbjct: 236 DQADFRGVR--SDFT--SRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A + ++E I +
Sbjct: 292 DDGISPERAAQVMGPPDRCQHAARIINELILT 323
>gi|302508471|ref|XP_003016196.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
gi|291179765|gb|EFE35551.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
Length = 531
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 134/332 (40%), Gaps = 76/332 (22%)
Query: 47 AQDVL-FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDND 105
AQ +L R IV S++ G +IGK G + +R+ET ++ + +RV+ ++
Sbjct: 208 AQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTGP--- 264
Query: 106 NVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN----TIRLLIAGSQAGCLIGMS 161
+ A +A +L+ A ++ G V N ++RLLI+ +Q G +IG
Sbjct: 265 --LQGTSKAYSIVAKSLLEG------APQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQ 316
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G I+ ++++SG +V LP ++R+V++ G + A+ EIG L ++
Sbjct: 317 GLKIKYIQDASGVRMVAQK-EMLP-----QSTERIVEVQGTPEGIEKAIWEIGKCLIDDW 370
Query: 222 PRQVISI----------------------SPAYNYS-------------AIRPAQ----- 241
R ++ +P+Y S + P+
Sbjct: 371 QRGTGTVLYNPAVRASVGSGSGQGSVTGTNPSYGGSSRSYNRTGNGADFSDHPSSYSRRG 430
Query: 242 ---------PFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
P V + T + I +VG +IGR G+ IS IR SGA I +
Sbjct: 431 NNDNPNRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGTKISEIRRSSGARISIAKAPH 490
Query: 293 EQK-HRHIQFGGSAQQVALAKQRVDEYIYSQL 323
+ R GSAQ A ++ +Y L
Sbjct: 491 DDTGERMFTIMGSAQ----ANEKALYLLYENL 518
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 25/198 (12%)
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAAN--T 144
D A + I+ +++ ++ AE L + + + +D +EA A + T
Sbjct: 154 DITAPYAIPAIMSTTEQRESGPGPAEETLAENFSRVSVNDQPEAEAPPKTEEEYAQSMLT 213
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R +++ +AG +IG +G+N+ LR+ +G + + H DRV+ ++G +
Sbjct: 214 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK-----VVQGVH--DRVLTVTGPLQ 266
Query: 205 AVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVG 264
A + L E P+ + N + + +LIS + +G
Sbjct: 267 GTSKAYSIVAKSLLEGAPQMGMGGVVQNNGTH----------------SVRLLISHNQMG 310
Query: 265 GLIGRCGSNISRIRNESG 282
+IGR G I I++ SG
Sbjct: 311 TIIGRQGLKIKYIQDASG 328
>gi|194376532|dbj|BAG57412.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 99/239 (41%), Gaps = 23/239 (9%)
Query: 27 GKRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA 86
GKR ED E E + + R + V RI++ S+ G VIGK G I+ +R + +
Sbjct: 20 GKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYYLVFVVF 79
Query: 87 DAIARHEERVIIISSKDNDNVVSDAENALQ-----QIAALILKDDDSNSEASKVAAGHVA 141
D+I + I ++ E LQ + L L+ D + G
Sbjct: 80 DSILSISADIETIGEILK-KIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDF 138
Query: 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG 201
+RLLI S AG +IG+ G I++LR ++ TI + C H +DRVV I G
Sbjct: 139 DCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----CC-PHSTDRVVLIGG 192
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISE 260
V+ + I + + E+P + +P P + DY F M+ +
Sbjct: 193 KPDRVVECIKIILDLISESPIK-----------GRAQPYDPNFYDETYDYGGFTMMFDD 240
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 53 RIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDN--DNVVSD 110
++ +P G +IGK G RI++IR E+ A+IKI + + E+R+I I+ + N
Sbjct: 386 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 445
Query: 111 AENALQQIA 119
+N+++Q A
Sbjct: 446 LQNSVKQYA 454
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 34/155 (21%)
Query: 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVP 204
+R+L+ AG +IG G+NI+ LR V+ D ++ IS D+
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYYLVFVVF--------------DSILSISADIE 90
Query: 205 AVLNALVEIGNQLREN---PPRQVISISP-------AYNYSAIRPAQPFVEPTSADY-VT 253
+ L +I L E P S P NY + +D+
Sbjct: 91 TIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK---------GSDFDCE 141
Query: 254 FEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+LI +SL GG+IG G+ I +R + IK++
Sbjct: 142 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 176
>gi|281341187|gb|EFB16771.1| hypothetical protein PANDA_007698 [Ailuropoda melanoleuca]
Length = 323
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 15/157 (9%)
Query: 67 KEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126
++G ++K+REE+ A I I++ ER++ I+ +DA + A ++D
Sbjct: 4 QKGETVKKMREESGARINISEG--NCPERIVTITGP------TDAIFKAFAMIAYKFEED 55
Query: 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL 186
NS ++ A T+RL++ SQ G LIG G I+++R S+GA + + A + LP
Sbjct: 56 IINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP- 112
Query: 187 CASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ ++R V ISG A++ + +I + E+PP+
Sbjct: 113 ----NSTERAVTISGTPDAIIQCVKQICVVMLESPPK 145
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 162 GQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221
G+ ++K+R SGA I I + + +R+V I+G A+ A I + E+
Sbjct: 6 GETVKKMREESGARINI---------SEGNCPERIVTITGPTDAIFKAFAMIAYKFEED- 55
Query: 222 PRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNES 281
N + PA TS VT +++ S G LIG+ GS I IR +
Sbjct: 56 ---------IINSMSNSPA------TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIREST 100
Query: 282 GAMIKVYG 289
GA ++V G
Sbjct: 101 GAQVQVAG 108
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNVV 108
V R++VP+ Q G +IGK G +I++IRE T A +++A D + ER + IS D ++
Sbjct: 71 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP-DAII 129
Query: 109 SDAENALQQIAALILKD 125
++QI ++L+
Sbjct: 130 ----QCVKQICVVMLES 142
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 253 TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQKHRHIQFGGSAQQVALAK 312
T E+ I L+G +IGR G+ I+ IR SGA IK+ R I G+ ++LA+
Sbjct: 258 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 317
Query: 313 QRVD 316
++
Sbjct: 318 YLIN 321
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 54 IIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIIS 100
+ +P+ IG +IG++G +I +IR+ + A IKIA+A ER I I+
Sbjct: 261 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITIT 307
>gi|345785612|ref|XP_855043.2| PREDICTED: RNA-binding protein Nova-2 [Canis lupus familiaris]
Length = 597
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 10/195 (5%)
Query: 32 EDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DA 88
E + G + + RA+ + ++++PS G +IGK G I ++++ET ATIK++ D
Sbjct: 120 ERTDTSGPNLQIRAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF 179
Query: 89 IARHEERVIII--SSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIR 146
ERV ++ +++ + V S +++I + K + N + A +
Sbjct: 180 YPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAK 239
Query: 147 LLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206
L++ S AG +IG G ++ + SGA + + +Q P + E RVV +SG+ V
Sbjct: 240 LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQE--RVVTVSGEPEQV 294
Query: 207 LNALVEIGNQLRENP 221
A+ I +++E+P
Sbjct: 295 HKAVSAIVQKVQEDP 309
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 15/199 (7%)
Query: 91 RHEERVIIISSKDNDNVVS-DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLI 149
R + ++SS DN + S D N Q+ ++ D++ ++ A +++LI
Sbjct: 86 RGQSLASVLSSIDNIPIHSRDNVNITPQLPHTSVERTDTSGPNLQIRA-EEGEYFLKVLI 144
Query: 150 AGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNA 209
AG +IG GQ I +L+ +GATI + ++RV + G A LNA
Sbjct: 145 PSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF----YPGTTERVCLVQGTAEA-LNA 199
Query: 210 LVE-IGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIG 268
+ I ++RE P Q ++ N I Q + P A ++++ S G +IG
Sbjct: 200 VHSFIAEKVREIP--QAMTKPEVVN---ILQPQTTMNPDRAKQA--KLIVPNSTAGLIIG 252
Query: 269 RCGSNISRIRNESGAMIKV 287
+ G+ + + +SGA +++
Sbjct: 253 KGGATVKAVMEQSGAWVQL 271
>gi|441623750|ref|XP_004088935.1| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 3 [Nomascus leucogenys]
Length = 847
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 50/278 (17%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 189 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 246
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D DSNS ++ LI S+ G +IG G+ I++L+
Sbjct: 247 GQIVDRCRNGPGFHNDIDSNSTIQEI------------LIPASKVGLVIGRGGETIKQLQ 294
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 295 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDAFKVQQAREMVLEIIREK--------- 340
Query: 230 PAYNYSAIRPAQPFVEPTSADYV------TFEMLISESLVGGLIGRCGSNISRIRNESGA 283
++ +R D+ + E+ + VG +IGR G I +I+N++G
Sbjct: 341 EQADFRGVR----------GDFTSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGV 390
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
I+ G R Q G + A + E I +
Sbjct: 391 RIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILT 428
>gi|363749247|ref|XP_003644841.1| hypothetical protein Ecym_2278 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888474|gb|AET38024.1| Hypothetical protein Ecym_2278 [Eremothecium cymbalariae
DBVPG#7215]
Length = 398
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVS 109
V R++ + V+G +G RI +I+E+TK I ++D I ERV+ +
Sbjct: 48 VHMRMLCLVKHASMVVGAKGERISRIKEDTKTRINVSDNIKNVPERVVYLRGS-----CE 102
Query: 110 DAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
D A +I+ I +DD S + T+ LLI G +IG G + ++
Sbjct: 103 DVAKAFGKISRAINDEDDRESNERSLPL------TVNLLIPHHLMGYVIGKQGSRLREIE 156
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223
+ S A +V P QLP+ +DRV+ I+G A+ A +G + P+
Sbjct: 157 DLSAARLV-AGPQQLPM-----SNDRVLCITGVADAIHIATYYVGQTILTCEPK 204
>gi|354502186|ref|XP_003513168.1| PREDICTED: far upstream element-binding protein 3-like isoform 1
[Cricetulus griseus]
Length = 574
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 40/273 (14%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKL 168
QI D D NS TI+ LLI S+ G +IG G+ I++L
Sbjct: 142 GQIVDRCRNGPGFHNDIDGNS-------------TIQELLIPASKVGLVIGKGGETIKQL 188
Query: 169 RNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISI 228
+ +G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 189 QERTGVKMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK-------- 235
Query: 229 SPAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
++ +R F + A + E+ + VG +IGR G I +I+N++G I+
Sbjct: 236 -DQADFRGVR--GDFA--SRAGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK 290
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A ++E I +
Sbjct: 291 PDDGISPERAAQVMGPPDRCQHAAHIINELILT 323
>gi|302839775|ref|XP_002951444.1| hypothetical protein VOLCADRAFT_105091 [Volvox carteri f.
nagariensis]
gi|300263419|gb|EFJ47620.1| hypothetical protein VOLCADRAFT_105091 [Volvox carteri f.
nagariensis]
Length = 1261
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 36/232 (15%)
Query: 28 KRRREDGEIEGSDPKRRAK----AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATI 83
KR+ +D + + +RR++ + + FR++ Q G VIGK G ++ IR+ + A +
Sbjct: 37 KRKPQDKDNKEKAKRRRSEKPAVPKGIHFRLLCHEGQAGAVIGKGGDTVRNIRKNSGAEV 96
Query: 84 KIADAIARHEERVIIISSKDNDNVVSD--AENALQQIAALILKDDD--SNSEASKVAAGH 139
+ I H RVIII S + V A+ AL A L ++ D + + SK+
Sbjct: 97 SVQPPIQGHRLRVIIIDSSPGNRAVPSYPAKEALLTCAMLTVEGDQPLNAPDPSKLV--- 153
Query: 140 VAANTIRLLIAGSQAGCLIGMSGQN----IEKLRNSSGATIVILAPNQLPLCASAHESDR 195
+RLL+ + A L+G+ + + GA ++I + P A A E
Sbjct: 154 ----DVRLLVHSALAAGLLGLKHSHGSLAAGDISARCGANVIIPGEAERPKLAEADE--E 207
Query: 196 VVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPT 247
+ + G PAV AL + +++R RQ + P VEPT
Sbjct: 208 YLLLRGPWPAVYAALGMVADEVR----RQFFELR-----------DPHVEPT 244
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 35 EIEGSDPKRRAKAQD-----VLFRIIVPSRQIGKVIGKEGHRIQKIREETK-ATIKIADA 88
I G P+ R+ A+ V ++++VP + G+ IGK G ++ +R +T+K+ A
Sbjct: 325 HIAGLVPEFRSSAEASTPIAVTYKLVVPESKAGRFIGKGGENLRDMRLALGLSTLKVHPA 384
Query: 89 IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLL 148
+ RV+ +SS + A N AL+ + + A G+ TI++L
Sbjct: 385 VKDTSVRVLEVSSTE-----PAASNRCAAADALLYYVERLGQNTPQGAGGNRGRITIKML 439
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
+ G ++G I ++ + A+ V+ +P + D+ ++ GD V
Sbjct: 440 LQQQHCGPVVGPRAAVIRQISALTKASCVVHKKGDVPPYGA--PDDQELEAEGDAQHVFE 497
Query: 209 AL 210
A+
Sbjct: 498 AI 499
>gi|410979294|ref|XP_003996020.1| PREDICTED: far upstream element-binding protein 3 [Felis catus]
Length = 572
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 38/272 (13%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D D NS ++ LI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDIDGNSTIQEI------------LIPASKVGLVIGKGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE +
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVR 244
Query: 230 PAYNYSAIRPAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVYG 289
+N + E+ + VG +IGR G I +I+N++G I+
Sbjct: 245 GDFN-------------ARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP 291
Query: 290 GKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A ++E I +
Sbjct: 292 DDGVSPERAAQVMGPPDRCQHAAHVINELILT 323
>gi|156102214|ref|XP_001616800.1| RNA-binding protein Nova-1 [Plasmodium vivax Sal-1]
gi|148805674|gb|EDL47073.1| RNA-binding protein Nova-1, putative [Plasmodium vivax]
Length = 335
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 147/339 (43%), Gaps = 75/339 (22%)
Query: 40 DPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIARHEERV 96
+ K +A +Q +++V + G VIGK G I I +T ++K++ +ERV
Sbjct: 8 EKKNKATSQLCFVKMLVNNLVAGSVIGKNGSIITSIENKTGCSLKLSPTNSYFPNTQERV 67
Query: 97 IIISSKDN--DNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQA 154
+++ K +N + + ++QI +D + + + K T R+++ S
Sbjct: 68 LVLCGKQEQINNALLIILDKIRQITTQNFQDKQNMNTSPKY--------TCRIVVPKSAV 119
Query: 155 GCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHE---SDRVVQISGDVPAVLNALV 211
+IG GQ I++L++++GA I I S+ E ++R++ I G ++ + +
Sbjct: 120 SAIIGKGGQQIKQLQDTTGAKIQI----------SSREDGLNERIISIIGPFESISDTAI 169
Query: 212 EIGNQLRENPP-RQVISI------------SPAYNYSAIRPAQPFVEPTSA------DYV 252
++ N ++ +P + ++++ S + N+ P +V P Y+
Sbjct: 170 KVTNSIQNDPNLKDLLNVIYSKDANMNGRSSLSQNFVNQVPLNGYVVPQQYGVFQHEQYM 229
Query: 253 TFEML--------------------ISESLVGGLIGRCGSNISRIRNESGAMIKVYGGKG 292
M+ I + +G +IG+ G+ ++ I N +GA I++ KG
Sbjct: 230 DVNMMNSLMRHSRDLFNLPCEISIQIPDEFIGSVIGKNGARLTNIMNSTGAQIRI-SRKG 288
Query: 293 E----QKHRHIQFGGSAQQV----ALAKQRVDEYIYSQL 323
E R ++ G+ V L QR+ E +Y QL
Sbjct: 289 ELVPGTADRKVRIMGTVAAVHAAHVLLLQRL-ESVYMQL 326
>gi|194225936|ref|XP_001499355.2| PREDICTED: far upstream element-binding protein 3 [Equus caballus]
Length = 573
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 118/273 (43%), Gaps = 40/273 (14%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 85 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 142
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI +++ ++TI+ LLI S+ G +IG G+ I++L+ +G
Sbjct: 143 GQIVDRCRNGPGFHNDVD-------GSSTIQELLIPASKVGLVIGKGGETIKQLQERTGV 195
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+V++ LP A D+ ++I+GD V A + +RE ++
Sbjct: 196 KMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK---------DQADF 241
Query: 235 SAIRPAQPFVEPTSADYV------TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+R D+ + E+ + VG +IGR G I +I+N++G I+
Sbjct: 242 RGVR----------GDFSSRMGGGSLEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK 291
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A ++E I +
Sbjct: 292 PDDGISPERAAQVMGPPDRCQHAAHVINELILT 324
>gi|269784927|ref|NP_001161615.1| NOVA-like protein [Saccoglossus kowalevskii]
gi|268054231|gb|ACY92602.1| NOVA-like protein [Saccoglossus kowalevskii]
Length = 516
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 24 DVSGKRRRE-DGEIEGSDPKRRAKAQD----VLFRIIVPSRQIGKVIGKEGHRIQKIREE 78
D+S R+R +G++E PKR + + ++++PS G VIGK G + +++ E
Sbjct: 15 DISDSRKRPLEGDVESGIPKRTNIGGNDDNKYILKMLIPSAAAGSVIGKGGQTVVQLQRE 74
Query: 79 TKATIKIA---DAIARHEERVIIISSKDNDNVVSDAENALQQIAALIL-KDDDSNSEASK 134
T A IK++ D ERV++I+ +L + ++ K DS A+K
Sbjct: 75 TGANIKLSKSNDYYPGTSERVVLITG---------TVESLTAVGNFVIEKVRDSPQLAAK 125
Query: 135 V----AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASA 190
A A ++++I S AG +IG G I+ +G+ + I ++
Sbjct: 126 TGNESAVSQERARQVKIIIPNSTAGLIIGKGGATIKAFMEQTGSKLQISQKSE-----GV 180
Query: 191 HESDRVVQISGDVPAVLNALVEIGNQLRENP 221
+ S+RV+ ISG+ A A+ + ++++E+P
Sbjct: 181 NLSERVLTISGEGDANKKAMNAVISKVQEDP 211
>gi|340522569|gb|EGR52802.1| predicted protein [Trichoderma reesei QM6a]
Length = 369
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 126/312 (40%), Gaps = 77/312 (24%)
Query: 33 DGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARH 92
DGE+ + A+AQ + R IV S++ G +IGK G + +R+ET ++ +
Sbjct: 31 DGELAPKTDEEYAQAQ-LTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGV 89
Query: 93 EERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANT----IRLL 148
+RV+ I+ DA + I A L + A V G V N I+LL
Sbjct: 90 HDRVLTITGG------CDAISRAYAIVARALLEG-----APVVGMGGVVQNNGTHPIKLL 138
Query: 149 IAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208
I+ +Q G +IG G I+ +++ SG +V + LP ++R+V++ G +
Sbjct: 139 ISHNQMGTIIGRQGLKIKHIQDVSGVRMV-AQKDMLP-----QSTERIVEVQGTPEGIQR 192
Query: 209 ALVEIGNQLRENPPRQVISISPAYN-------------------------YSAIR----- 238
A+ EI L ++ R ++ YN Y + R
Sbjct: 193 AIWEISKCLVDDWQRGTGTV--LYNPVVRTQSSGSGSLGGSGYGNGSGRDYGSPRVMRTG 250
Query: 239 --------PAQPFVEPTSADYVTF---------------EMLISESLVGGLIGRCGSNIS 275
++PF + +D T + I +VG +IGR GS IS
Sbjct: 251 NGADFSNGGSRPFSRRSDSDAATRGPPTHDENGEEIQTQNISIPADMVGCIIGRGGSKIS 310
Query: 276 RIRNESGAMIKV 287
IR SGA I +
Sbjct: 311 DIRKTSGARISI 322
>gi|402221820|gb|EJU01888.1| hypothetical protein DACRYDRAFT_22325 [Dacryopinax sp. DJM-731 SS1]
Length = 355
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 115/291 (39%), Gaps = 61/291 (20%)
Query: 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDN 106
A+ + R +V ++ G +IGK G + +RE T ++ + ERV+ ++
Sbjct: 25 AEILTLRALVSTKDAGIIIGKAGRNVADLRESTGVKAGVSKVVPGVHERVLSVTGP---- 80
Query: 107 VVSDAENALQQIAALIL---KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQ 163
V A IA+ +L + T+RLLI+ + G LIG SG
Sbjct: 81 -VEAVAKAYTLIASQLLSPPAPPSPPQTPPPSPPNQASTLTLRLLISHNLMGTLIGRSGL 139
Query: 164 NIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN--- 220
I+ ++++SG +V A LP ++RVV++ GD ++ A+ E+G L E+
Sbjct: 140 KIKSIQDASGVRMVA-AKEMLP-----QSTERVVEVIGDAESIGRAVEEVGRCLVEDWER 193
Query: 221 --------------------------PPRQVISISPAYNYSAIRPA-------------- 240
PR+ +PA+ S R +
Sbjct: 194 GVGTVLYHPGAAVDPSLAMQHGASHVSPRRTNGQAPAFGTSGRRQSIGQQTSLPAAAASV 253
Query: 241 ----QPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
P + T + I +VG +IGR G+ I+ IR SG+ I +
Sbjct: 254 LAPASPTSNAGNQPIRTQNISIPSDMVGCIIGRGGAKITEIRRLSGSKISI 304
>gi|255719726|ref|XP_002556143.1| KLTH0H06050p [Lachancea thermotolerans]
gi|238942109|emb|CAR30281.1| KLTH0H06050p [Lachancea thermotolerans CBS 6340]
Length = 392
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 28 KRRREDGEIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87
KR D E +DP + R++ +Q ++G G +I +++EET I ++D
Sbjct: 34 KRVALDDTEETNDPGNEINKDYIHLRMLCLVKQASMIVGPGGEKISRMKEETNTRINVSD 93
Query: 88 AIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRL 147
I ERVI I + D + ++ ++++ N E ++ A T+ +
Sbjct: 94 NIRGVPERVIFIRGRCED---------VAKVFGMVVR--AINGETDGESSEQSATLTLNI 142
Query: 148 LIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207
LI GC+IG G + ++ S A + + P LP+ +DR++ +SG A+
Sbjct: 143 LIPHHMMGCVIGRQGSRLREIEELSAAKL-MAGPQTLPM-----SNDRILCVSGVADAIH 196
Query: 208 NALVEIGNQL 217
A +G +
Sbjct: 197 IATYYVGQTI 206
>gi|383873059|ref|NP_001244672.1| far upstream element-binding protein 3 [Macaca mulatta]
gi|380787701|gb|AFE65726.1| far upstream element-binding protein 3 [Macaca mulatta]
gi|383414151|gb|AFH30289.1| far upstream element-binding protein 3 [Macaca mulatta]
gi|384950158|gb|AFI38684.1| far upstream element-binding protein 3 [Macaca mulatta]
Length = 572
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 50/278 (17%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 141
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D DSNS ++ LI S+ G +IG G+ I++L+
Sbjct: 142 GQIVDRCRNGPGFHNDIDSNSTIQEI------------LIPASKVGLVIGRGGETIKQLQ 189
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 190 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDAFKVQQAREMVLEIIREK--------- 235
Query: 230 PAYNYSAIRPAQPFVEPTSADYV------TFEMLISESLVGGLIGRCGSNISRIRNESGA 283
++ +R D+ + E+ + VG +IGR G I +I+N++G
Sbjct: 236 DQADFRGVR----------GDFSSRVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGV 285
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
I+ G R Q G + A + E I +
Sbjct: 286 RIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILT 323
>gi|449277028|gb|EMC85335.1| Insulin-like growth factor 2 mRNA-binding protein 1, partial
[Columba livia]
Length = 519
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 41/263 (15%)
Query: 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA-DAIARHEERVIIISSKDNDNV 107
D+ R++VP++ +G +IGKEG I+ I ++T++ I + A E+ I I S
Sbjct: 139 DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHSTP---- 194
Query: 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEK 167
A + I ++ K+ A +V +++L + G LIG G+N++K
Sbjct: 195 -EGCSAACKMILEIMQKEAKDTKTADEVP--------LKILAHNNFVGRLIGKEGRNLKK 245
Query: 168 LRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVIS 227
+ + I I + L L + +R + + G + A EI ++RE V +
Sbjct: 246 VEQDTETKITISSLQDLTL----YNPERTITVKGSIENCCRAEQEIMKKVREAYENDVAA 301
Query: 228 IS------PAYNYSAI-----------------RPAQPFVEPTSADYVTFEMLISESLVG 264
+S P N +A+ A P+ + T + I VG
Sbjct: 302 MSLQSHLIPGLNLAAVGLFPASSSAVPPPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVG 361
Query: 265 GLIGRCGSNISRIRNESGAMIKV 287
+IG+ G +I ++ + A IK+
Sbjct: 362 AIIGKKGQHIKQLSRFASASIKI 384
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 113/289 (39%), Gaps = 64/289 (22%)
Query: 35 EIEGSDPKRRAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIA---DAIAR 91
EI + K A +V +I+ + +G++IGKEG ++K+ ++T+ I I+ D
Sbjct: 206 EIMQKEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLY 265
Query: 92 HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAG-HVAA-------- 142
+ ER I + +N + ++++ D + S S + G ++AA
Sbjct: 266 NPERTITVKG-SIENCCRAEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAAVGLFPASS 324
Query: 143 ------------------------NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVI 178
T+ + I G +IG GQ+I++L + A+I I
Sbjct: 325 SAVPPPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI 384
Query: 179 LAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIR 238
AP + P R+V I+G A A I +L+E
Sbjct: 385 -APPETP-----DSKVRMVVITGPPEAQFKAQGRIYGKLKE------------------- 419
Query: 239 PAQPFVEPTSADYVTFEMLISESLVGGLIGRCGSNISRIRNESGAMIKV 287
+ F P + + + S G +IG+ G ++ ++N + A + V
Sbjct: 420 --ENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 466
>gi|351695446|gb|EHA98364.1| Far upstream element-binding protein 3 [Heterocephalus glaber]
Length = 490
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 117/273 (42%), Gaps = 40/273 (14%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 71 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 128
Query: 116 QQIAALILKDDDSNSEASKVAAGHVAANTIR-LLIAGSQAGCLIGMSGQNIEKLRNSSGA 174
QI +++ NTI+ +LI S+ G +IG G+ I++L+ +G
Sbjct: 129 GQIVDRCRNGPGFHNDVD-------GNNTIQEILIPASKVGLVIGKGGETIKQLQERTGV 181
Query: 175 TIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISISPAYNY 234
+V++ LP A D+ ++I+GD V A + +RE ++
Sbjct: 182 KMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK---------DQADF 227
Query: 235 SAIRPAQPFVEPTSADYV------TFEMLISESLVGGLIGRCGSNISRIRNESGAMIKVY 288
+R D+ + E+ + VG +IGR G I +I+N++G I+
Sbjct: 228 RGVR----------GDFSSRLGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK 277
Query: 289 GGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
G R Q G + A ++E I +
Sbjct: 278 PDDGVSPERAAQVMGPPDRCQHAAHIINELILT 310
>gi|390458450|ref|XP_002806580.2| PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding
protein 3 [Callithrix jacchus]
Length = 773
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 116/278 (41%), Gaps = 50/278 (17%)
Query: 56 VPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENAL 115
VP + +G +IG+ G +I +I+ E+ I+IA + ER +++ + A+ L
Sbjct: 200 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPES--IEQAKRLL 257
Query: 116 QQI------AALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLR 169
QI D DSNS ++ LI S+ G +IG G+ I++L+
Sbjct: 258 GQIVDRCRNGPGFHNDIDSNSTIQEI------------LIPASKVGLVIGRGGETIKQLQ 305
Query: 170 NSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQVISIS 229
+G +V++ LP A D+ ++I+GD V A + +RE
Sbjct: 306 ERTGVKMVMIQDGPLPTGA-----DKPLRITGDPFKVQQAREMVLEIIREK--------- 351
Query: 230 PAYNYSAIRPAQPFVEPTSADYV------TFEMLISESLVGGLIGRCGSNISRIRNESGA 283
++ +R D+ + E+ + VG +IGR G I +I+N++G
Sbjct: 352 DQADFRGVR----------GDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGV 401
Query: 284 MIKVYGGKGEQKHRHIQFGGSAQQVALAKQRVDEYIYS 321
I+ G R Q G + A ++E I +
Sbjct: 402 RIQFKPDDGISPERAAQVMGPPDRCQHAAHIINELILT 439
>gi|336376793|gb|EGO05128.1| hypothetical protein SERLA73DRAFT_174106 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389739|gb|EGO30882.1| hypothetical protein SERLADRAFT_455154 [Serpula lacrymans var.
lacrymans S7.9]
Length = 335
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 114/268 (42%), Gaps = 46/268 (17%)
Query: 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDA 111
R +V +++ G +IGK G + +RE+T ++ I ERV+ IS V
Sbjct: 32 LRALVSTKEAGVIIGKAGKNVADLREQTGVKAGVSKVIPGVHERVLAISGS-----VEAV 86
Query: 112 ENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171
A I + ++ S + + H IRLLI+ + G +IG SG I+ +++
Sbjct: 87 AKAYTIITSQLVTSSSSLVSSPPPSLSH---TVIRLLISHNLMGTIIGRSGLKIKAIQDV 143
Query: 172 SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPRQV--ISIS 229
SGA +V + + LP ++R+V++ G A+ A+ EIG L E+ R + +
Sbjct: 144 SGARMVA-SKDMLP-----QSTERIVEVQGTPEAIGRAIEEIGRCLLEDWERGLGTVLFH 197
Query: 230 PAYNYSAIR-------------PAQPFVEPTS-----------------ADYVTFEMLIS 259
P R + E T+ A+ T + I
Sbjct: 198 PGLGDDMSRSRKTANLLSGSGGSGRTHEESTNNLASSPVSPPPASPVQPANLRTQNISIP 257
Query: 260 ESLVGGLIGRCGSNISRIRNESGAMIKV 287
+VG +IGR GS I+ IR SG+ I +
Sbjct: 258 SDMVGCIIGRSGSKITEIRRLSGSKISI 285
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 28/142 (19%)
Query: 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSG--ATIVILAPNQLPLCASAHESDRVVQISG 201
++R L++ +AG +IG +G+N+ LR +G A + + P HE RV+ ISG
Sbjct: 31 SLRALVSTKEAGVIIGKAGKNVADLREQTGVKAGVSKVIPG-------VHE--RVLAISG 81
Query: 202 DVPAVLNALVEIGNQLRENPPRQVISISPAYNYSAIRPAQPFVEPTSADYVTFEMLISES 261
V AV A I +QL + V S P+ +++ IR +LIS +
Sbjct: 82 SVEAVAKAYTIITSQLVTSSSSLVSSPPPSLSHTVIR-----------------LLISHN 124
Query: 262 LVGGLIGRCGSNISRIRNESGA 283
L+G +IGR G I I++ SGA
Sbjct: 125 LMGTIIGRSGLKIKAIQDVSGA 146
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,825,489,013
Number of Sequences: 23463169
Number of extensions: 193660568
Number of successful extensions: 484617
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 1443
Number of HSP's that attempted gapping in prelim test: 466325
Number of HSP's gapped (non-prelim): 13121
length of query: 330
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 188
effective length of database: 9,027,425,369
effective search space: 1697155969372
effective search space used: 1697155969372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 77 (34.3 bits)