BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020141
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03943|IM30_PEA Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum
GN=IM30 PE=2 SV=1
Length = 323
Score = 469 bits (1207), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/342 (73%), Positives = 283/342 (82%), Gaps = 31/342 (9%)
Query: 1 MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVTR---------LRI 51
M K QI +G +P P SSS ++KKPL T+ F TR +RI
Sbjct: 1 MTTKFQIFSG--LPSAPLQPSSS--------LLKKPLATTLFG---TRPVDTLKFRVMRI 47
Query: 52 APSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLV 111
A R GGGA+ RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL
Sbjct: 48 AKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLT 101
Query: 112 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 171
KMRQATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA
Sbjct: 102 KMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNA 161
Query: 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT 231
++LKAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT
Sbjct: 162 SSLKAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT 221
Query: 232 SSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSK 291
SSALSAFEKMEEKV+TMESQA++L QLTTDDLEGKFA+LETSSVDDDLANLKKEL+GSSK
Sbjct: 222 SSALSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAMLETSSVDDDLANLKKELAGSSK 281
Query: 292 KGELPPGRAAASSTNTAF---PFRDAEIEKELNELRQRAKDF 330
KGELPPGR++ +ST + PFRDA+IE EL +LR+R+K+
Sbjct: 282 KGELPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRKRSKEL 323
>sp|Q8S0J7|IM30_ORYSJ Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1
Length = 317
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/319 (72%), Positives = 264/319 (82%), Gaps = 10/319 (3%)
Query: 12 TMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVTRLRIAPSSRSHCYRQGGGALNTRM 71
++ + P P +S+S + L TSF NG V+ LR+ +S+ R + R
Sbjct: 9 SLRLAPPPPASAS-------FRRTALRTSFLNGSVS-LRLIQVRQSNVNRFKCNGI--RS 58
Query: 72 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC 131
NL DR +RVVKSYANA+LSSFEDPEKIL+QAVLEMNDDL KMRQATAQVLASQKRLENK
Sbjct: 59 NLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKY 118
Query: 132 KAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 191
KAAEQAS+DWYR+AQLALQKG+EDLAREALKRRKSYADNA++LKAQLDQQK VV NLVSN
Sbjct: 119 KAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVENLVSN 178
Query: 192 TRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQ 251
TR+LESKI EA+ KKDTLKARAQSAKT+TKVSEMLGNVNTS ALSAFEKMEEKV+ MESQ
Sbjct: 179 TRVLESKIAEAKQKKDTLKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVMAMESQ 238
Query: 252 ADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPF 311
A++L QL TDDLEGKFALLETSSVDDDLA +KKE+SGSS KGELPPGR A S++ A PF
Sbjct: 239 AEALGQLATDDLEGKFALLETSSVDDDLAQMKKEISGSSSKGELPPGRTAVSNSGAARPF 298
Query: 312 RDAEIEKELNELRQRAKDF 330
RD EIE ELNELR++A ++
Sbjct: 299 RDIEIENELNELRKKANEY 317
>sp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis
thaliana GN=VIPP1 PE=1 SV=1
Length = 330
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/336 (68%), Positives = 275/336 (81%), Gaps = 12/336 (3%)
Query: 1 MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKK-PLTTSFFNGG-----VTRLRIAPS 54
MA K+ VTG P+ P SSS S+SS+ C ++ PL TSFF V LR+A
Sbjct: 1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACD 60
Query: 55 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 114
+R C G GA MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMR
Sbjct: 61 NRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMR 115
Query: 115 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 174
QATAQVLASQK+L+NK KAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA AL
Sbjct: 116 QATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATAL 175
Query: 175 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 234
K QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM+G VNTS A
Sbjct: 176 KTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGA 235
Query: 235 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGE 294
LSAFEKMEEKV+ MES+AD+L Q+ TD+LEGKF +LETSSVDDDLA+LKKELSGSSKKGE
Sbjct: 236 LSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETSSVDDDLADLKKELSGSSKKGE 295
Query: 295 LPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF 330
LPPGR+ +++ T +PF+D+EIE ELNELR++A DF
Sbjct: 296 LPPGRSTVAAS-TRYPFKDSEIENELNELRRKANDF 330
>sp|Q55707|Y617_SYNY3 Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0617 PE=3 SV=1
Length = 267
Score = 195 bits (496), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 176/267 (65%), Gaps = 15/267 (5%)
Query: 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 130
M LFDRL RVV++ N ++S EDPEK+LEQAV++M +DLV++RQA A+ +A +KR E +
Sbjct: 1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQR 60
Query: 131 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 190
Q ++ W +A+LAL GEE+LAREAL R+KS D A A + QL QQ+ + NL
Sbjct: 61 LNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRR 120
Query: 191 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 250
N LE+KI EA++KK+ L+ARA++AK ++ + LG + TSSA SAFE+ME KVL ME+
Sbjct: 121 NLAALEAKISEAKTKKNMLQARAKAAKANAELQQTLGGLGTSSATSAFERMENKVLDMEA 180
Query: 251 QADSLNQLTTDDLEGKFALLETSS-VDDDLANLKKELSGSSKKGELPPGRAA-----ASS 304
+ + +L +E +FA LE SS V+D+LA LK ++G G LP AA A+
Sbjct: 181 TSQAAGELAGFGIENQFAQLEASSGVEDELAALKASMAG----GALPGTSAATPQLEAAP 236
Query: 305 TNTAFPFR-----DAEIEKELNELRQR 326
+++ P DA I++EL++LR+R
Sbjct: 237 VDSSVPANNASQDDAVIDQELDDLRRR 263
>sp|Q9RUB7|PSPA_DEIRA Phage shock protein A homolog OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1473 PE=1
SV=1
Length = 223
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%)
Query: 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 130
M++FDRL+R++++ N ++S EDP KI++QA+ +M R A +A +LE +
Sbjct: 1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLERE 60
Query: 131 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 190
+ + ++ +KA+ AL+ G EDLAREAL+R +++ D A Q Q++ V+ L +
Sbjct: 61 AGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKT 120
Query: 191 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 250
R LE+KI E SKK L AR ++A+ + + G A+ AF +ME+KV ME
Sbjct: 121 QLRALEAKIDEMESKKTLLAARQKTAQAGETLDRVSGFSKAGGAMDAFNEMEQKVAGMED 180
Query: 251 QADSLNQLTTD-DLEGKFA-LLETSSVDDDLANLKKELSGSSK 291
+ ++ +L D D + + L VDD LA LK ++ S++
Sbjct: 181 RNKAMGELRNDQDFDAQLKDLGRDKDVDDALAALKAKVQSSNQ 223
>sp|P0AFM8|PSPA_SHIFL Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2
Length = 222
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 1/214 (0%)
Query: 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 130
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 131 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 190
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 191 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 250
LE+K+ E R+++ L R Q+A ++ V L + A++ FE E ++ ME+
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180
Query: 251 QADSLNQLTTDDLEGKFALLET-SSVDDDLANLK 283
+A+S + L+ +FA L+ ++ + LA LK
Sbjct: 181 EAESHSFGKQKSLDDQFAELKADDAISEQLAQLK 214
>sp|P0AFM6|PSPA_ECOLI Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1
SV=2
Length = 222
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 1/214 (0%)
Query: 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 130
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 131 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 190
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 191 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 250
LE+K+ E R+++ L R Q+A ++ V L + A++ FE E ++ ME+
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180
Query: 251 QADSLNQLTTDDLEGKFALLET-SSVDDDLANLK 283
+A+S + L+ +FA L+ ++ + LA LK
Sbjct: 181 EAESHSFGKQKSLDDQFAELKADDAISEQLAQLK 214
>sp|P0AFM7|PSPA_ECO57 Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2
Length = 222
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 1/214 (0%)
Query: 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 130
M +F R A +V + NA+L EDP+K++ + EM D LV++R +A+ LA +K+L +
Sbjct: 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60
Query: 131 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 190
+ A +W KA+LAL K EDLAR AL ++ D +L+ ++ + + +
Sbjct: 61 IEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKK 120
Query: 191 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 250
LE+K+ E R+++ L R Q+A ++ V L + A++ FE E ++ ME+
Sbjct: 121 EIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEA 180
Query: 251 QADSLNQLTTDDLEGKFALLET-SSVDDDLANLK 283
+A+S + L+ +FA L+ ++ + LA LK
Sbjct: 181 EAESHSFGKQKSLDDQFAELKADDAISEQLAQLK 214
>sp|P54617|PSPA_BACSU Phage shock protein A homolog OS=Bacillus subtilis (strain 168)
GN=ydjF PE=1 SV=3
Length = 227
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 127/234 (54%), Gaps = 29/234 (12%)
Query: 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ---KRL 127
M++ R ++ + NA+L E+PEK+++Q + MN DL K++ TA V+A + KR
Sbjct: 1 MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKRE 60
Query: 128 ENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA-------QLDQ 180
++C+A + E + K ALQ G E AR+ L+R+ S + L+A Q
Sbjct: 61 YHECQADMEKMESYAMK---ALQAGNESDARKFLERKTSLESKLSELQAANQIAATNAAQ 117
Query: 181 QKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLG--NVNTSSALSAF 238
+ + + LVS+ I E ++K+ +KA+ AKT ++++ LG +TS ++SAF
Sbjct: 118 MRKMHDKLVSD-------IGELEARKNMIKAKWAVAKTQERMNK-LGASVSSTSQSMSAF 169
Query: 239 EKMEEKVLTMESQADSLNQLTT------DDLEGKFALLETSSVDDDLANLKKEL 286
+ME+KV QA+++ +L + DL K+ +S VDD+LA LK ++
Sbjct: 170 GRMEDKVNKALDQANAMAELNSAPQDDMADLSAKYDTGGSSQVDDELAALKAKM 223
>sp|O32201|LIAH_BACSU Protein LiaH OS=Bacillus subtilis (strain 168) GN=liaH PE=2 SV=1
Length = 225
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 89 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 148
L E+P+ +L Q V +M D+ K +Q + + + K + A + + +AQLA
Sbjct: 18 LDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLA 77
Query: 149 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 208
GEE+LA++AL K A KA +Q + + +L LE+K+Q+ + KK
Sbjct: 78 FDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQA 137
Query: 209 LKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQAD 253
L ARA +AK ++ +++ SA F ++E ++ ME +A+
Sbjct: 138 LIARANAAKAKEHMNTTFDKIDSESAYREFLRIENRIEEMEIRAN 182
>sp|P11046|LAMB1_DROME Laminin subunit beta-1 OS=Drosophila melanogaster GN=LanB1 PE=1 SV=4
Length = 1788
Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats.
Identities = 61/278 (21%), Positives = 112/278 (40%), Gaps = 19/278 (6%)
Query: 66 ALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQK 125
A+ ++ + D+ R + ++E ++ EQ+ +N ++ A +A
Sbjct: 1452 AITSKKDQADQTIRALTQAKLNASEAYEKAKRGFEQSERYLNQTNANIKLAENLFIALNN 1511
Query: 126 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAR--EALKRRKSYADNANALKAQLDQQKN 183
ENK + ++ E + L L+ E++ + + R S N A+ + +
Sbjct: 1512 FQENKTASPSESKELAQKTLDLDLKLEPEEIETLGDQINRAVSSLKNVEAIIYRTKPDLD 1571
Query: 184 VVNNLVSNTRLLESK----IQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFE 239
VNNL S + K + A S ++L A +S A + N N A E
Sbjct: 1572 RVNNLQSIANATKEKADKILDSANSVVESLAAADESQGKAKDAIQQ-ANSNIELAGQDLE 1630
Query: 240 KMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSV--DDDLANLKKE-----LSGSSKK 292
K++E+ + E+ A++ Q + L K L+ + + D D + KE L +
Sbjct: 1631 KIDEETYSAEAPANNTAQ-QVEKLAKKVQKLQNNIMKNDRDAKEITKEAGSVKLEAMRAR 1689
Query: 293 GELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF 330
GE ++A S+TN R + E R+RAK
Sbjct: 1690 GEANNLQSATSATNQTLTDRASRSENA----RERAKQL 1723
>sp|Q9PTG8|TACC3_XENLA Transforming acidic coiled-coil-containing protein 3 OS=Xenopus
laevis GN=tacc3 PE=1 SV=2
Length = 931
Score = 35.0 bits (79), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 74 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ-------KR 126
+ + +++ + I ED ++ E A LE+N L + +Q + + + KR
Sbjct: 762 YVEMGKIIAEFEGTITQILEDSQRQKETAKLELNKVLQEKQQVQVDLNSMETSFSELFKR 821
Query: 127 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN 186
LE + +A E YRK + AL+K ED K + Y ALKA +++ N N
Sbjct: 822 LEKQKEALE-----GYRKNEEALKKCVEDYLVRIKKEEQRY----QALKAHAEEKLNRAN 872
Query: 187 NLVSNTR 193
+++ R
Sbjct: 873 EEIAHVR 879
>sp|P34011|ATI_VAR67 A-type inclusion protein A25 homolog OS=Variola virus (isolate
Human/India/Ind3/1967) GN=A28L PE=3 SV=1
Length = 702
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 126 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD---------NANALKA 176
+++ C+ + S W L++ ++DL E KRR + + K
Sbjct: 522 KVDGSCQGRLELSRMW-------LKQRDDDLRAEIDKRRNVEWELSKLRRDIKECDKYKE 574
Query: 177 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211
+LD+ K ++N VS LES+I + + +DTL A
Sbjct: 575 ELDKAKTTISNYVSRISTLESEIAKYQQDRDTLSA 609
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.122 0.317
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,526,909
Number of Sequences: 539616
Number of extensions: 3659884
Number of successful extensions: 19989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 843
Number of HSP's that attempted gapping in prelim test: 19079
Number of HSP's gapped (non-prelim): 1626
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)