Query 020141
Match_columns 330
No_of_seqs 157 out of 817
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10698 phage shock protein P 100.0 2.5E-47 5.4E-52 351.1 31.5 219 71-289 1-220 (222)
2 TIGR02977 phageshock_pspA phag 100.0 9.1E-46 2E-50 340.0 31.4 218 71-288 1-219 (219)
3 COG1842 PspA Phage shock prote 100.0 4.2E-43 9.1E-48 322.8 31.3 218 71-288 1-222 (225)
4 PF04012 PspA_IM30: PspA/IM30 100.0 9.6E-43 2.1E-47 319.2 31.0 216 72-287 1-220 (221)
5 PTZ00446 vacuolar sorting prot 98.6 8.1E-06 1.8E-10 73.9 19.9 149 117-279 29-182 (191)
6 KOG1656 Protein involved in gl 98.4 6.1E-05 1.3E-09 68.2 20.3 152 153-324 59-217 (221)
7 PF03357 Snf7: Snf7; InterPro 98.2 7.5E-05 1.6E-09 65.1 15.0 164 116-298 2-166 (171)
8 PTZ00464 SNF-7-like protein; P 98.2 0.00093 2E-08 61.6 22.2 114 154-288 60-175 (211)
9 KOG2911 Uncharacterized conser 98.0 0.00093 2E-08 66.8 19.7 190 110-325 228-421 (439)
10 TIGR02977 phageshock_pspA phag 97.9 0.0035 7.6E-08 57.8 21.4 181 106-328 29-218 (219)
11 PRK10698 phage shock protein P 97.6 0.022 4.8E-07 52.9 20.7 117 172-328 95-218 (222)
12 COG1842 PspA Phage shock prote 97.5 0.068 1.5E-06 49.8 23.5 193 102-328 18-221 (225)
13 KOG3230 Vacuolar assembly/sort 97.5 0.055 1.2E-06 49.2 21.3 204 90-325 5-223 (224)
14 PF04012 PspA_IM30: PspA/IM30 97.4 0.027 5.9E-07 51.6 19.7 122 104-230 26-152 (221)
15 KOG2910 Uncharacterized conser 97.0 0.24 5.3E-06 44.9 21.3 66 123-188 24-89 (209)
16 KOG0996 Structural maintenance 96.9 0.43 9.2E-06 53.4 24.2 146 99-257 804-963 (1293)
17 KOG0971 Microtubule-associated 96.6 1.6 3.5E-05 47.8 25.9 125 69-196 225-352 (1243)
18 PRK04863 mukB cell division pr 96.5 0.76 1.7E-05 53.5 24.7 135 73-210 258-396 (1486)
19 TIGR00606 rad50 rad50. This fa 96.4 0.99 2.2E-05 51.9 24.4 56 160-215 879-934 (1311)
20 PRK02224 chromosome segregatio 96.2 2.5 5.5E-05 46.2 25.4 93 114-212 529-621 (880)
21 PF08317 Spc7: Spc7 kinetochor 96.1 0.67 1.5E-05 45.3 18.3 138 99-251 154-291 (325)
22 PRK02224 chromosome segregatio 96.1 2.2 4.8E-05 46.7 24.3 14 274-287 388-401 (880)
23 TIGR02169 SMC_prok_A chromosom 95.9 1.1 2.4E-05 50.0 21.4 18 312-329 952-969 (1164)
24 PRK09039 hypothetical protein; 95.9 1.4 3.1E-05 43.5 19.8 47 171-217 139-185 (343)
25 KOG0963 Transcription factor/C 95.9 3 6.4E-05 44.1 23.9 104 102-205 122-225 (629)
26 PRK09039 hypothetical protein; 95.8 1.6 3.4E-05 43.1 20.0 51 163-213 117-167 (343)
27 PF00261 Tropomyosin: Tropomyo 95.8 1.1 2.5E-05 41.6 17.8 41 96-136 17-57 (237)
28 COG1196 Smc Chromosome segrega 95.7 3.8 8.2E-05 46.7 24.9 28 117-144 795-822 (1163)
29 TIGR02169 SMC_prok_A chromosom 95.6 4.8 0.0001 44.9 24.7 14 98-111 269-282 (1164)
30 PRK04863 mukB cell division pr 95.3 3.7 8.1E-05 48.0 22.9 94 120-214 291-386 (1486)
31 KOG0982 Centrosomal protein Nu 95.2 1.9 4.1E-05 43.7 17.8 113 100-212 228-347 (502)
32 KOG3231 Predicted assembly/vac 95.2 2.2 4.8E-05 38.1 18.9 191 102-324 12-207 (208)
33 PF08317 Spc7: Spc7 kinetochor 94.9 3 6.4E-05 40.8 18.3 106 97-211 145-251 (325)
34 KOG0994 Extracellular matrix g 94.9 3.8 8.2E-05 46.3 20.3 40 99-138 1568-1607(1758)
35 PF12128 DUF3584: Protein of u 94.7 8.6 0.00019 44.1 23.7 59 96-154 623-681 (1201)
36 PF12128 DUF3584: Protein of u 94.5 9.1 0.0002 43.9 23.2 41 98-138 604-644 (1201)
37 PF09726 Macoilin: Transmembra 94.4 8 0.00017 41.9 21.4 59 230-288 588-654 (697)
38 PRK11637 AmiB activator; Provi 94.4 4.6 0.0001 40.8 18.7 36 171-206 91-126 (428)
39 smart00787 Spc7 Spc7 kinetocho 94.3 5.2 0.00011 39.1 18.1 139 97-250 147-285 (312)
40 KOG0250 DNA repair protein RAD 94.2 12 0.00026 42.0 26.4 108 96-207 677-786 (1074)
41 PRK11637 AmiB activator; Provi 94.1 7.3 0.00016 39.3 22.4 41 99-139 80-120 (428)
42 PHA02562 46 endonuclease subun 94.1 5.9 0.00013 40.9 19.2 22 235-256 298-319 (562)
43 PF06160 EzrA: Septation ring 94.1 2.6 5.6E-05 44.3 16.7 181 117-329 55-263 (560)
44 PRK04778 septation ring format 93.9 10 0.00022 40.0 23.0 36 231-267 443-478 (569)
45 COG4372 Uncharacterized protei 93.8 8.3 0.00018 38.8 23.7 25 235-259 265-289 (499)
46 COG1196 Smc Chromosome segrega 93.6 17 0.00036 41.7 24.1 13 274-286 946-958 (1163)
47 KOG3229 Vacuolar sorting prote 93.5 6.2 0.00013 36.4 20.0 71 123-193 26-96 (227)
48 PF00261 Tropomyosin: Tropomyo 93.4 6.7 0.00014 36.5 22.3 110 99-213 55-164 (237)
49 KOG0161 Myosin class II heavy 93.2 18 0.00039 43.4 22.7 76 73-148 926-1011(1930)
50 KOG3232 Vacuolar assembly/sort 93.2 6.2 0.00014 35.5 21.8 117 115-256 9-136 (203)
51 PTZ00464 SNF-7-like protein; P 93.2 0.99 2.2E-05 41.7 10.4 19 309-327 155-173 (211)
52 KOG0994 Extracellular matrix g 92.6 23 0.00049 40.5 26.0 126 71-208 1506-1637(1758)
53 KOG0161 Myosin class II heavy 92.4 15 0.00033 44.0 20.8 98 97-199 925-1022(1930)
54 KOG1655 Protein involved in va 92.2 9.2 0.0002 35.1 15.7 105 156-289 64-177 (218)
55 KOG0977 Nuclear envelope prote 91.8 10 0.00022 39.8 16.8 95 110-204 94-190 (546)
56 PF03357 Snf7: Snf7; InterPro 91.8 1.4 3E-05 38.1 9.2 149 171-327 3-153 (171)
57 PRK04778 septation ring format 91.6 20 0.00044 37.7 26.8 184 90-288 278-466 (569)
58 PF10168 Nup88: Nuclear pore c 91.5 24 0.00052 38.5 21.1 146 72-218 504-667 (717)
59 KOG0250 DNA repair protein RAD 91.3 30 0.00065 39.1 20.6 106 100-209 336-441 (1074)
60 KOG0804 Cytoplasmic Zn-finger 91.0 14 0.0003 37.9 16.2 35 96-130 334-369 (493)
61 PF12718 Tropomyosin_1: Tropom 90.8 10 0.00022 32.9 18.4 108 94-210 14-121 (143)
62 KOG0971 Microtubule-associated 90.5 24 0.00052 39.3 18.3 108 72-182 368-475 (1243)
63 PRK03918 chromosome segregatio 90.4 31 0.00066 37.8 24.7 18 72-89 124-141 (880)
64 COG1382 GimC Prefoldin, chaper 90.1 11 0.00023 32.0 13.5 101 102-209 7-110 (119)
65 PF10174 Cast: RIM-binding pro 90.0 34 0.00073 37.6 20.3 123 85-216 229-355 (775)
66 PHA02562 46 endonuclease subun 89.9 26 0.00057 36.1 22.8 10 193-202 309-318 (562)
67 KOG2911 Uncharacterized conser 89.8 16 0.00036 37.1 15.6 49 273-326 337-385 (439)
68 TIGR02231 conserved hypothetic 89.7 3.9 8.5E-05 42.4 11.8 33 102-134 72-104 (525)
69 KOG0996 Structural maintenance 89.6 43 0.00094 38.3 20.9 37 112-148 388-424 (1293)
70 TIGR01843 type_I_hlyD type I s 89.3 23 0.0005 34.7 18.0 10 276-285 318-327 (423)
71 KOG0804 Cytoplasmic Zn-finger 89.0 16 0.00035 37.4 14.9 48 99-146 352-399 (493)
72 PF10168 Nup88: Nuclear pore c 89.0 11 0.00024 41.0 14.8 78 72-149 539-620 (717)
73 PRK10884 SH3 domain-containing 89.0 15 0.00033 33.8 13.8 49 178-226 127-175 (206)
74 PF13514 AAA_27: AAA domain 88.9 48 0.001 37.8 22.3 41 109-149 674-714 (1111)
75 TIGR01005 eps_transp_fam exopo 88.8 22 0.00047 38.5 17.0 112 101-220 288-406 (754)
76 TIGR01843 type_I_hlyD type I s 88.6 26 0.00056 34.4 19.2 11 43-53 51-61 (423)
77 TIGR00606 rad50 rad50. This fa 88.6 54 0.0012 38.1 24.7 38 173-210 981-1018(1311)
78 PF00038 Filament: Intermediat 88.5 23 0.00051 33.7 17.8 104 80-202 29-136 (312)
79 COG1579 Zn-ribbon protein, pos 88.4 23 0.00049 33.5 19.6 118 84-211 14-131 (239)
80 PF10481 CENP-F_N: Cenp-F N-te 87.9 15 0.00033 35.3 13.2 56 155-210 11-66 (307)
81 KOG0979 Structural maintenance 87.9 46 0.001 37.4 18.4 143 104-253 184-328 (1072)
82 PF09726 Macoilin: Transmembra 87.7 46 0.00099 36.2 20.4 54 91-144 450-510 (697)
83 PF13166 AAA_13: AAA domain 87.7 38 0.00083 36.1 18.0 62 168-229 409-471 (712)
84 PRK12704 phosphodiesterase; Pr 87.5 40 0.00087 35.3 19.4 49 95-143 40-89 (520)
85 PF00769 ERM: Ezrin/radixin/mo 87.4 26 0.00056 33.0 16.3 107 97-204 8-117 (246)
86 PF10046 BLOC1_2: Biogenesis o 86.7 15 0.00033 29.6 13.2 95 73-201 4-98 (99)
87 TIGR03752 conj_TIGR03752 integ 86.6 10 0.00022 39.1 12.0 53 102-154 60-112 (472)
88 PF06785 UPF0242: Uncharacteri 86.2 17 0.00036 36.1 12.6 94 111-212 130-223 (401)
89 TIGR03007 pepcterm_ChnLen poly 85.9 44 0.00094 34.1 21.0 52 160-211 202-268 (498)
90 TIGR03017 EpsF chain length de 85.9 34 0.00074 34.2 15.6 26 192-217 344-369 (444)
91 PF12718 Tropomyosin_1: Tropom 85.7 23 0.00049 30.7 17.7 67 81-147 5-74 (143)
92 PF10498 IFT57: Intra-flagella 85.5 41 0.0009 33.6 18.5 134 111-254 216-353 (359)
93 TIGR02473 flagell_FliJ flagell 85.5 20 0.00043 29.9 16.6 99 103-207 8-106 (141)
94 KOG0980 Actin-binding protein 85.1 68 0.0015 35.7 22.1 32 181-212 422-453 (980)
95 PRK03918 chromosome segregatio 85.1 64 0.0014 35.3 21.3 33 167-199 671-703 (880)
96 KOG1029 Endocytic adaptor prot 85.0 67 0.0014 35.4 17.6 40 173-212 420-459 (1118)
97 KOG0249 LAR-interacting protei 84.6 21 0.00046 38.7 13.5 45 159-203 213-257 (916)
98 PF05384 DegS: Sensor protein 84.6 28 0.00061 30.8 17.8 116 73-196 3-118 (159)
99 TIGR03319 YmdA_YtgF conserved 84.4 57 0.0012 34.1 19.3 49 96-144 35-84 (514)
100 smart00685 DM14 Repeats in fly 83.9 4.7 0.0001 29.9 6.1 44 132-175 2-45 (59)
101 PF13851 GAS: Growth-arrest sp 83.9 34 0.00074 31.2 24.0 127 74-216 7-133 (201)
102 PF12325 TMF_TATA_bd: TATA ele 83.8 25 0.00055 29.7 14.8 42 100-141 22-63 (120)
103 PRK05689 fliJ flagellar biosyn 83.7 26 0.00057 29.7 16.4 97 105-207 13-109 (147)
104 TIGR03185 DNA_S_dndD DNA sulfu 83.7 66 0.0014 34.4 18.9 80 126-208 395-474 (650)
105 KOG0933 Structural maintenance 83.6 85 0.0018 35.5 18.3 17 234-250 963-979 (1174)
106 PF08614 ATG16: Autophagy prot 83.5 21 0.00046 32.1 11.7 51 163-213 131-181 (194)
107 PRK07720 fliJ flagellar biosyn 83.5 27 0.00058 29.7 16.6 96 106-207 14-109 (146)
108 PF06160 EzrA: Septation ring 82.2 71 0.0015 33.7 21.1 153 97-252 104-294 (560)
109 TIGR00634 recN DNA repair prot 82.1 70 0.0015 33.6 21.3 54 99-155 159-212 (563)
110 KOG0976 Rho/Rac1-interacting s 82.1 89 0.0019 34.7 22.2 21 196-216 416-436 (1265)
111 PRK09343 prefoldin subunit bet 81.7 30 0.00065 29.0 13.2 105 99-210 5-112 (121)
112 PRK15422 septal ring assembly 81.5 20 0.00044 28.1 9.0 62 90-151 14-75 (79)
113 COG1579 Zn-ribbon protein, pos 80.9 51 0.0011 31.2 20.0 111 99-212 36-146 (239)
114 COG4372 Uncharacterized protei 80.7 69 0.0015 32.5 20.1 50 163-212 159-208 (499)
115 PRK00846 hypothetical protein; 80.6 17 0.00036 28.4 8.4 55 163-217 7-61 (77)
116 PF03148 Tektin: Tektin family 80.4 67 0.0014 32.2 17.7 129 73-201 223-363 (384)
117 COG3883 Uncharacterized protei 80.2 30 0.00066 33.2 11.7 14 205-218 99-112 (265)
118 PF03194 LUC7: LUC7 N_terminus 80.1 21 0.00046 33.8 10.7 82 95-176 84-170 (254)
119 COG4477 EzrA Negative regulato 80.0 84 0.0018 33.1 17.0 61 228-288 189-266 (570)
120 PF09730 BicD: Microtubule-ass 80.0 98 0.0021 33.8 19.9 118 89-211 274-394 (717)
121 PF09730 BicD: Microtubule-ass 79.7 1E+02 0.0022 33.8 19.4 120 88-212 21-143 (717)
122 PRK11281 hypothetical protein; 79.7 1.2E+02 0.0027 34.8 19.7 129 81-218 41-177 (1113)
123 TIGR03007 pepcterm_ChnLen poly 79.3 78 0.0017 32.3 15.9 26 97-122 207-232 (498)
124 PF05266 DUF724: Protein of un 79.2 50 0.0011 30.0 16.8 35 62-103 41-75 (190)
125 PLN02718 Probable galacturonos 79.2 10 0.00023 40.2 9.0 109 94-206 158-266 (603)
126 PF05701 WEMBL: Weak chloropla 78.9 88 0.0019 32.7 19.6 42 175-216 392-433 (522)
127 PRK00409 recombination and DNA 78.9 73 0.0016 35.1 15.7 49 99-147 518-566 (782)
128 PF05335 DUF745: Protein of un 78.7 52 0.0011 29.9 15.9 52 96-147 69-120 (188)
129 PF06120 Phage_HK97_TLTM: Tail 78.2 71 0.0015 31.2 18.2 104 106-210 72-175 (301)
130 PF04111 APG6: Autophagy prote 78.0 72 0.0016 31.2 14.2 43 174-216 83-125 (314)
131 PF05701 WEMBL: Weak chloropla 77.3 98 0.0021 32.3 23.6 50 169-218 211-263 (522)
132 PF04102 SlyX: SlyX; InterPro 77.1 18 0.0004 27.3 7.6 50 167-216 2-51 (69)
133 PRK13729 conjugal transfer pil 77.1 10 0.00022 39.2 8.0 48 168-215 75-122 (475)
134 PF15619 Lebercilin: Ciliary p 77.0 59 0.0013 29.6 20.3 72 76-147 36-107 (194)
135 PRK08476 F0F1 ATP synthase sub 76.9 47 0.001 28.4 14.2 46 97-142 34-79 (141)
136 KOG2391 Vacuolar sorting prote 76.7 84 0.0018 31.3 18.6 110 32-153 169-284 (365)
137 PRK04406 hypothetical protein; 76.7 29 0.00062 26.9 8.7 50 166-215 8-57 (75)
138 PRK00736 hypothetical protein; 76.5 21 0.00046 27.0 7.8 49 167-215 3-51 (68)
139 COG4942 Membrane-bound metallo 76.2 97 0.0021 31.7 20.3 111 89-207 136-248 (420)
140 KOG0995 Centromere-associated 75.7 1.1E+02 0.0025 32.3 20.7 74 85-159 247-323 (581)
141 CHL00118 atpG ATP synthase CF0 75.6 53 0.0011 28.4 14.3 51 97-147 49-99 (156)
142 smart00502 BBC B-Box C-termina 75.5 40 0.00086 26.9 14.8 58 99-156 5-62 (127)
143 PRK00295 hypothetical protein; 75.4 30 0.00065 26.2 8.3 48 168-215 4-51 (68)
144 smart00787 Spc7 Spc7 kinetocho 75.4 85 0.0018 30.7 20.0 39 105-144 114-152 (312)
145 PRK04325 hypothetical protein; 75.3 30 0.00066 26.6 8.5 50 166-215 6-55 (74)
146 COG2433 Uncharacterized conser 75.1 1.1E+02 0.0025 32.6 15.0 104 113-218 343-464 (652)
147 COG1566 EmrA Multidrug resista 75.1 86 0.0019 31.3 13.7 38 105-142 88-125 (352)
148 TIGR01010 BexC_CtrB_KpsE polys 75.0 87 0.0019 30.7 17.5 52 94-147 141-195 (362)
149 KOG0964 Structural maintenance 75.0 1E+02 0.0022 34.9 15.1 35 168-202 341-375 (1200)
150 PF06008 Laminin_I: Laminin Do 74.7 76 0.0016 29.8 19.5 111 97-211 90-206 (264)
151 COG3883 Uncharacterized protei 74.5 84 0.0018 30.2 20.3 73 93-165 51-127 (265)
152 PF10498 IFT57: Intra-flagella 74.4 98 0.0021 30.9 16.2 39 168-206 279-317 (359)
153 PF07888 CALCOCO1: Calcium bin 74.3 1.2E+02 0.0027 32.0 18.9 22 185-206 285-306 (546)
154 PF11180 DUF2968: Protein of u 74.1 71 0.0015 29.2 12.7 113 75-199 72-184 (192)
155 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.9 54 0.0012 27.7 16.8 31 100-130 16-46 (132)
156 TIGR03545 conserved hypothetic 73.8 46 0.001 35.2 12.1 57 90-147 146-202 (555)
157 KOG0946 ER-Golgi vesicle-tethe 73.7 1.2E+02 0.0025 33.7 14.9 31 118-148 747-777 (970)
158 PF05667 DUF812: Protein of un 73.6 1.3E+02 0.0029 32.1 19.2 43 99-141 326-368 (594)
159 PRK02793 phi X174 lysis protei 73.6 31 0.00068 26.3 8.1 49 167-215 6-54 (72)
160 PF06810 Phage_GP20: Phage min 73.5 43 0.00093 29.4 10.1 53 168-220 26-81 (155)
161 COG3074 Uncharacterized protei 73.4 38 0.00083 26.1 8.3 63 89-151 13-75 (79)
162 PRK10884 SH3 domain-containing 73.4 76 0.0016 29.2 13.1 17 104-120 96-112 (206)
163 PF05622 HOOK: HOOK protein; 72.9 1.1 2.5E-05 48.2 0.0 104 99-206 244-348 (713)
164 PRK02119 hypothetical protein; 72.9 36 0.00078 26.1 8.3 51 165-215 5-55 (73)
165 PRK10869 recombination and rep 72.8 1.3E+02 0.0028 31.7 21.2 80 99-181 155-234 (553)
166 PF13514 AAA_27: AAA domain 72.7 1.8E+02 0.0039 33.2 25.6 93 118-210 739-835 (1111)
167 TIGR02231 conserved hypothetic 72.7 44 0.00095 34.7 11.6 35 96-130 73-107 (525)
168 PF01576 Myosin_tail_1: Myosin 72.7 1.5 3.3E-05 48.4 0.9 214 73-286 606-857 (859)
169 PF05816 TelA: Toxic anion res 72.3 1E+02 0.0022 30.2 16.0 63 71-133 72-134 (333)
170 PF11365 DUF3166: Protein of u 72.2 4.1 8.8E-05 33.2 3.0 64 263-329 20-87 (96)
171 PF05103 DivIVA: DivIVA protei 72.1 1.2 2.7E-05 37.0 0.1 50 99-148 23-72 (131)
172 KOG1003 Actin filament-coating 71.8 83 0.0018 29.0 14.2 49 98-146 106-154 (205)
173 COG2433 Uncharacterized conser 71.8 1.2E+02 0.0027 32.4 14.3 39 107-145 421-459 (652)
174 PRK13454 F0F1 ATP synthase sub 71.7 74 0.0016 28.4 14.0 51 97-147 58-108 (181)
175 PRK03947 prefoldin subunit alp 71.2 63 0.0014 27.3 13.9 43 100-142 5-47 (140)
176 COG2882 FliJ Flagellar biosynt 70.9 73 0.0016 28.0 19.2 99 106-210 14-112 (148)
177 PF14662 CCDC155: Coiled-coil 70.5 87 0.0019 28.7 16.7 59 85-147 27-85 (193)
178 COG4942 Membrane-bound metallo 70.2 1.3E+02 0.0029 30.7 22.6 50 94-143 59-108 (420)
179 COG3206 GumC Uncharacterized p 70.2 1.3E+02 0.0028 30.6 16.0 32 189-220 372-403 (458)
180 PF04102 SlyX: SlyX; InterPro 70.1 28 0.0006 26.3 7.1 37 167-203 16-52 (69)
181 PLN02742 Probable galacturonos 70.1 45 0.00097 35.1 10.7 104 99-205 72-176 (534)
182 PF04111 APG6: Autophagy prote 69.9 1.1E+02 0.0025 29.8 14.8 38 173-210 96-133 (314)
183 PF01576 Myosin_tail_1: Myosin 69.8 1.5 3.2E-05 48.5 0.0 138 71-212 231-371 (859)
184 PLN02829 Probable galacturonos 69.8 25 0.00055 37.5 9.0 107 96-206 178-284 (639)
185 PRK00295 hypothetical protein; 69.5 43 0.00092 25.3 7.9 36 167-202 17-52 (68)
186 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.2 69 0.0015 27.0 16.7 15 196-210 104-118 (132)
187 PF10186 Atg14: UV radiation r 68.7 1E+02 0.0022 28.7 17.4 39 167-205 68-106 (302)
188 PRK06975 bifunctional uroporph 68.6 1.2E+02 0.0027 32.6 14.2 85 156-249 372-458 (656)
189 PF05103 DivIVA: DivIVA protei 68.5 3.4 7.3E-05 34.3 1.9 65 83-147 21-85 (131)
190 TIGR03017 EpsF chain length de 68.4 1.3E+02 0.0029 30.0 14.3 46 99-144 252-297 (444)
191 PF06156 DUF972: Protein of un 68.3 23 0.00049 29.3 6.7 63 97-159 11-81 (107)
192 PF07888 CALCOCO1: Calcium bin 68.1 1.7E+02 0.0036 31.0 21.3 10 315-324 414-423 (546)
193 PRK10476 multidrug resistance 68.0 1.2E+02 0.0026 29.4 15.5 16 103-118 88-103 (346)
194 COG0497 RecN ATPase involved i 68.0 1.7E+02 0.0037 31.1 21.0 55 88-142 144-198 (557)
195 KOG2685 Cystoskeletal protein 67.9 1.5E+02 0.0032 30.3 15.6 127 73-199 250-388 (421)
196 PRK13169 DNA replication intia 67.8 28 0.0006 29.0 7.2 43 99-141 13-55 (110)
197 TIGR01005 eps_transp_fam exopo 67.4 1.9E+02 0.0041 31.3 20.4 24 97-120 197-220 (754)
198 PRK02793 phi X174 lysis protei 66.8 49 0.0011 25.3 7.9 47 163-209 9-55 (72)
199 PF07889 DUF1664: Protein of u 66.8 81 0.0018 26.9 10.6 35 168-202 88-122 (126)
200 PF06637 PV-1: PV-1 protein (P 66.6 1.5E+02 0.0033 30.0 13.7 30 108-137 285-314 (442)
201 PRK09174 F0F1 ATP synthase sub 66.5 1.1E+02 0.0023 28.1 14.4 51 97-147 80-130 (204)
202 PF15619 Lebercilin: Ciliary p 66.5 1E+02 0.0022 28.0 14.4 22 96-117 70-91 (194)
203 PF00038 Filament: Intermediat 66.2 1.2E+02 0.0027 28.8 19.6 47 94-140 188-234 (312)
204 KOG0976 Rho/Rac1-interacting s 66.2 2.2E+02 0.0048 31.8 18.4 19 236-254 452-470 (1265)
205 PF13094 CENP-Q: CENP-Q, a CEN 65.6 72 0.0016 27.7 9.8 37 117-153 57-93 (160)
206 PF05010 TACC: Transforming ac 65.5 1.1E+02 0.0025 28.2 19.5 105 99-218 35-139 (207)
207 PRK04406 hypothetical protein; 65.3 53 0.0012 25.4 7.9 46 163-208 12-57 (75)
208 PF05529 Bap31: B-cell recepto 65.2 76 0.0017 28.3 10.2 33 165-197 157-189 (192)
209 PF14662 CCDC155: Coiled-coil 65.2 1.1E+02 0.0024 28.0 17.2 52 96-147 62-113 (193)
210 PF12240 Angiomotin_C: Angiomo 65.1 1.2E+02 0.0025 28.1 16.2 118 169-300 57-183 (205)
211 KOG0978 E3 ubiquitin ligase in 65.1 2.1E+02 0.0047 31.2 16.5 48 98-145 493-540 (698)
212 TIGR02680 conserved hypothetic 65.1 2.8E+02 0.0062 32.6 25.0 43 169-211 340-382 (1353)
213 PF15254 CCDC14: Coiled-coil d 64.9 2.3E+02 0.0049 31.4 16.5 18 78-95 339-356 (861)
214 cd00632 Prefoldin_beta Prefold 64.8 73 0.0016 25.7 13.0 94 109-209 7-103 (105)
215 KOG0980 Actin-binding protein 64.8 2.4E+02 0.0052 31.6 18.3 104 108-212 403-509 (980)
216 KOG0977 Nuclear envelope prote 64.7 2E+02 0.0042 30.6 24.4 116 96-211 87-218 (546)
217 PRK02119 hypothetical protein; 64.5 57 0.0012 25.0 7.9 46 163-208 10-55 (73)
218 PRK00736 hypothetical protein; 64.3 60 0.0013 24.5 7.9 35 167-201 17-51 (68)
219 PRK10803 tol-pal system protei 64.3 29 0.00063 32.9 7.6 36 173-208 58-93 (263)
220 PF08826 DMPK_coil: DMPK coile 64.1 58 0.0013 24.3 8.6 44 167-210 16-59 (61)
221 PF14915 CCDC144C: CCDC144C pr 64.1 1.5E+02 0.0032 29.0 16.5 103 106-212 4-106 (305)
222 KOG0018 Structural maintenance 63.9 2.2E+02 0.0047 32.6 14.8 76 137-212 364-452 (1141)
223 PHA03190 UL14 tegument protein 63.6 1.2E+02 0.0026 27.7 15.6 115 197-315 65-192 (196)
224 PF02403 Seryl_tRNA_N: Seryl-t 63.5 76 0.0017 25.4 9.4 33 120-152 34-66 (108)
225 PLN02910 polygalacturonate 4-a 63.4 45 0.00097 35.8 9.3 107 96-206 192-298 (657)
226 PF10191 COG7: Golgi complex c 63.4 2.4E+02 0.0051 31.1 19.3 47 99-145 54-100 (766)
227 PF05667 DUF812: Protein of un 63.3 2.1E+02 0.0047 30.6 19.5 87 96-183 330-422 (594)
228 KOG0018 Structural maintenance 63.3 2.8E+02 0.006 31.8 20.6 118 92-211 681-828 (1141)
229 cd07664 BAR_SNX2 The Bin/Amphi 62.7 1.4E+02 0.0029 28.1 22.3 65 73-141 2-69 (234)
230 PRK04325 hypothetical protein; 62.5 66 0.0014 24.7 7.9 35 167-201 21-55 (74)
231 TIGR01000 bacteriocin_acc bact 62.4 1.8E+02 0.004 29.5 15.3 29 119-147 169-197 (457)
232 PRK15136 multidrug efflux syst 61.8 1.8E+02 0.0038 29.1 14.8 11 103-113 101-111 (390)
233 TIGR01069 mutS2 MutS2 family p 61.8 2.2E+02 0.0047 31.4 14.6 20 306-325 693-712 (771)
234 TIGR02971 heterocyst_DevB ABC 61.6 1.5E+02 0.0033 28.3 15.5 15 39-53 20-34 (327)
235 TIGR02338 gimC_beta prefoldin, 60.6 92 0.002 25.4 13.9 100 103-209 5-107 (110)
236 PF07111 HCR: Alpha helical co 60.5 2.6E+02 0.0056 30.6 23.3 106 96-205 498-604 (739)
237 KOG0978 E3 ubiquitin ligase in 60.3 2.6E+02 0.0057 30.5 24.7 155 157-326 484-643 (698)
238 PF09731 Mitofilin: Mitochondr 60.1 2.2E+02 0.0049 29.7 22.6 25 98-122 248-272 (582)
239 KOG0612 Rho-associated, coiled 60.1 3.3E+02 0.0072 31.7 21.5 9 12-20 353-361 (1317)
240 PF10883 DUF2681: Protein of u 59.9 68 0.0015 25.7 7.7 50 185-234 25-74 (87)
241 PF09789 DUF2353: Uncharacteri 59.9 1.8E+02 0.004 28.6 13.3 42 94-142 9-50 (319)
242 PF05377 FlaC_arch: Flagella a 59.4 42 0.00091 24.6 5.9 35 165-199 3-37 (55)
243 PRK08476 F0F1 ATP synthase sub 59.3 1.1E+02 0.0025 26.0 16.0 46 73-118 28-76 (141)
244 PTZ00446 vacuolar sorting prot 59.0 1.4E+02 0.0031 27.2 14.9 22 210-231 104-125 (191)
245 KOG1937 Uncharacterized conser 58.8 2.3E+02 0.005 29.4 16.2 91 120-212 260-360 (521)
246 PRK00846 hypothetical protein; 58.8 85 0.0018 24.5 7.9 36 168-203 26-61 (77)
247 PF00769 ERM: Ezrin/radixin/mo 58.6 1.6E+02 0.0035 27.6 15.2 23 266-288 177-200 (246)
248 KOG1103 Predicted coiled-coil 58.3 2.1E+02 0.0046 28.8 16.5 100 93-207 85-184 (561)
249 PF09738 DUF2051: Double stran 58.0 1.9E+02 0.0041 28.3 15.8 28 260-287 214-243 (302)
250 KOG4302 Microtubule-associated 57.9 2.8E+02 0.006 30.2 14.1 111 85-207 23-134 (660)
251 cd07655 F-BAR_PACSIN The F-BAR 57.9 1.7E+02 0.0036 27.6 18.2 17 71-87 59-75 (258)
252 PF12777 MT: Microtubule-bindi 57.8 1.5E+02 0.0034 29.0 11.7 34 156-189 69-102 (344)
253 PF06005 DUF904: Protein of un 57.5 86 0.0019 24.1 8.8 29 122-150 39-67 (72)
254 PRK01156 chromosome segregatio 57.5 3E+02 0.0066 30.4 20.4 41 167-207 686-726 (895)
255 PF02050 FliJ: Flagellar FliJ 57.3 91 0.002 24.4 17.1 90 112-208 2-91 (123)
256 PF08614 ATG16: Autophagy prot 57.0 1.3E+02 0.0029 26.9 10.3 41 103-143 69-109 (194)
257 PF06120 Phage_HK97_TLTM: Tail 56.9 2E+02 0.0043 28.1 14.4 71 71-141 37-114 (301)
258 PF07445 priB_priC: Primosomal 56.6 1.5E+02 0.0032 26.5 12.3 45 98-142 41-90 (173)
259 PF05478 Prominin: Prominin; 56.3 3.1E+02 0.0068 30.2 19.1 118 92-212 171-289 (806)
260 PF10211 Ax_dynein_light: Axon 56.2 1.5E+02 0.0034 26.7 14.9 29 120-148 125-153 (189)
261 PF09486 HrpB7: Bacterial type 56.1 1.5E+02 0.0032 26.3 18.5 106 99-208 13-118 (158)
262 PRK11281 hypothetical protein; 56.0 3.8E+02 0.0081 31.0 18.7 42 96-137 123-164 (1113)
263 TIGR02132 phaR_Bmeg polyhydrox 55.9 1.6E+02 0.0035 26.7 18.1 115 91-209 5-133 (189)
264 TIGR01000 bacteriocin_acc bact 55.9 2.4E+02 0.0051 28.7 18.8 6 278-283 368-373 (457)
265 PF06476 DUF1090: Protein of u 55.8 1.2E+02 0.0026 25.3 9.8 53 153-207 61-113 (115)
266 TIGR00998 8a0101 efflux pump m 55.6 1.9E+02 0.0041 27.5 13.2 18 125-142 76-93 (334)
267 COG0419 SbcC ATPase involved i 55.4 3.4E+02 0.0073 30.3 21.9 7 320-326 483-489 (908)
268 PF09304 Cortex-I_coil: Cortex 54.8 1.2E+02 0.0027 25.1 14.5 51 162-212 37-87 (107)
269 KOG3091 Nuclear pore complex, 54.4 2.2E+02 0.0047 29.8 12.2 46 167-212 346-391 (508)
270 PF05010 TACC: Transforming ac 54.3 1.8E+02 0.0039 26.9 21.4 44 168-211 68-111 (207)
271 TIGR00998 8a0101 efflux pump m 54.1 2E+02 0.0044 27.3 16.4 9 44-52 51-59 (334)
272 KOG4674 Uncharacterized conser 54.1 4.9E+02 0.011 31.8 20.7 140 71-214 1224-1377(1822)
273 COG1730 GIM5 Predicted prefold 53.7 95 0.0021 27.1 8.3 51 165-215 90-140 (145)
274 PRK11020 hypothetical protein; 53.6 1.3E+02 0.0027 25.4 8.5 51 127-177 3-53 (118)
275 PRK11578 macrolide transporter 53.6 2.2E+02 0.0047 27.9 12.0 14 103-116 101-114 (370)
276 KOG1029 Endocytic adaptor prot 53.3 3.6E+02 0.0079 30.1 17.5 43 94-136 451-500 (1118)
277 PF13094 CENP-Q: CENP-Q, a CEN 53.1 1.3E+02 0.0028 26.0 9.2 49 159-207 24-72 (160)
278 TIGR03752 conj_TIGR03752 integ 53.1 1.9E+02 0.0042 30.0 11.6 56 96-151 61-116 (472)
279 PF10234 Cluap1: Clusterin-ass 53.0 2.2E+02 0.0047 27.4 15.4 72 167-249 167-238 (267)
280 KOG0796 Spliceosome subunit [R 52.9 2.4E+02 0.0052 27.9 12.5 74 95-168 84-161 (319)
281 PF05546 She9_MDM33: She9 / Md 52.6 2E+02 0.0042 26.7 10.8 44 96-139 34-77 (207)
282 PRK14475 F0F1 ATP synthase sub 52.3 1.6E+02 0.0035 25.7 14.4 49 97-145 37-85 (167)
283 PF15112 DUF4559: Domain of un 52.3 2.4E+02 0.0052 27.7 13.0 129 73-206 164-304 (307)
284 PF06008 Laminin_I: Laminin Do 52.2 2.1E+02 0.0044 26.9 19.9 142 105-250 70-234 (264)
285 PRK10803 tol-pal system protei 52.1 79 0.0017 30.0 8.3 46 165-210 57-102 (263)
286 KOG4673 Transcription factor T 51.8 3.6E+02 0.0079 29.6 17.1 139 72-210 474-632 (961)
287 TIGR00293 prefoldin, archaeal 51.7 1.4E+02 0.0029 24.6 9.6 8 127-134 25-32 (126)
288 PF13863 DUF4200: Domain of un 51.7 1.3E+02 0.0029 24.5 17.3 106 103-209 9-114 (126)
289 PF00015 MCPsignal: Methyl-acc 51.6 1.7E+02 0.0036 25.6 13.0 37 74-110 73-109 (213)
290 KOG4360 Uncharacterized coiled 51.2 3.2E+02 0.007 28.8 15.5 140 96-283 161-302 (596)
291 PRK11519 tyrosine kinase; Prov 51.2 3.5E+02 0.0077 29.3 16.7 20 157-176 306-325 (719)
292 PF05615 THOC7: Tho complex su 51.2 1.5E+02 0.0032 25.0 12.6 92 128-219 15-110 (139)
293 CHL00118 atpG ATP synthase CF0 51.1 1.6E+02 0.0035 25.4 16.1 49 73-121 43-94 (156)
294 KOG4403 Cell surface glycoprot 51.0 2.6E+02 0.0057 28.9 11.9 55 79-134 238-292 (575)
295 PF08172 CASP_C: CASP C termin 50.8 1.8E+02 0.0038 27.6 10.3 45 168-212 78-122 (248)
296 PRK00409 recombination and DNA 50.7 3.8E+02 0.0083 29.6 17.0 35 95-129 500-534 (782)
297 PF13949 ALIX_LYPXL_bnd: ALIX 50.3 2.2E+02 0.0048 26.7 17.6 140 68-215 6-169 (296)
298 PF05008 V-SNARE: Vesicle tran 50.2 1.1E+02 0.0023 23.1 9.1 72 74-145 1-77 (79)
299 PF04728 LPP: Lipoprotein leuc 50.0 1E+02 0.0022 22.7 7.7 11 213-223 38-48 (56)
300 PLN02769 Probable galacturonos 50.0 1.1E+02 0.0025 32.8 9.7 113 93-208 173-285 (629)
301 COG1566 EmrA Multidrug resista 49.6 2.8E+02 0.0061 27.7 13.3 15 134-148 129-143 (352)
302 PRK13428 F0F1 ATP synthase sub 49.1 3.1E+02 0.0068 28.1 15.2 10 74-83 23-32 (445)
303 PRK13729 conjugal transfer pil 49.0 88 0.0019 32.5 8.5 43 168-210 82-124 (475)
304 PF02183 HALZ: Homeobox associ 48.9 80 0.0017 22.0 5.8 35 168-202 4-38 (45)
305 PF07743 HSCB_C: HSCB C-termin 48.7 1.1E+02 0.0025 22.9 9.0 76 93-175 2-77 (78)
306 PF07106 TBPIP: Tat binding pr 48.5 1.2E+02 0.0026 26.5 8.4 24 233-256 113-136 (169)
307 PRK14127 cell division protein 48.2 64 0.0014 26.8 6.1 37 171-207 32-68 (109)
308 PF09789 DUF2353: Uncharacteri 47.7 2.9E+02 0.0063 27.3 12.9 117 97-230 68-185 (319)
309 PF14942 Muted: Organelle biog 47.5 1.9E+02 0.0041 25.2 16.6 76 72-150 7-94 (145)
310 PF04849 HAP1_N: HAP1 N-termin 47.5 2.9E+02 0.0062 27.2 16.0 44 171-214 250-293 (306)
311 PF11629 Mst1_SARAH: C termina 47.4 16 0.00035 26.1 2.1 15 313-327 21-35 (49)
312 PF09325 Vps5: Vps5 C terminal 47.4 2.1E+02 0.0046 25.7 20.1 68 71-142 2-72 (236)
313 PRK06569 F0F1 ATP synthase sub 47.3 2E+02 0.0044 25.4 14.1 57 107-170 47-103 (155)
314 TIGR01144 ATP_synt_b ATP synth 47.3 1.7E+02 0.0038 24.6 14.3 9 74-82 17-25 (147)
315 PF10234 Cluap1: Clusterin-ass 47.2 2.7E+02 0.0059 26.8 15.6 58 96-154 164-221 (267)
316 PRK00888 ftsB cell division pr 47.0 88 0.0019 25.6 6.8 46 102-147 28-73 (105)
317 PF09849 DUF2076: Uncharacteri 47.0 52 0.0011 31.2 6.1 61 72-140 11-73 (247)
318 PF15070 GOLGA2L5: Putative go 47.0 4E+02 0.0087 28.7 18.5 45 95-139 23-67 (617)
319 PLN02939 transferase, transfer 46.6 4.9E+02 0.011 29.7 14.4 77 96-181 266-343 (977)
320 PRK07737 fliD flagellar cappin 46.5 1.6E+02 0.0034 30.7 10.1 23 168-190 472-494 (501)
321 PF07794 DUF1633: Protein of u 46.2 3.9E+02 0.0084 28.3 12.9 60 96-159 599-658 (790)
322 TIGR02302 aProt_lowcomp conser 46.1 4.8E+02 0.01 29.3 26.0 36 138-173 570-605 (851)
323 TIGR02449 conserved hypothetic 46.0 1.3E+02 0.0028 22.8 8.6 48 172-219 3-50 (65)
324 PRK06231 F0F1 ATP synthase sub 45.7 2.4E+02 0.0052 25.7 16.0 54 94-147 71-125 (205)
325 PF10174 Cast: RIM-binding pro 45.3 4.7E+02 0.01 29.0 21.6 50 165-214 374-423 (775)
326 PRK13428 F0F1 ATP synthase sub 45.3 3.6E+02 0.0077 27.6 14.3 50 97-146 28-77 (445)
327 PRK10476 multidrug resistance 45.2 2.9E+02 0.0064 26.7 15.6 6 278-283 255-260 (346)
328 TIGR00414 serS seryl-tRNA synt 45.1 3.2E+02 0.0069 27.7 11.8 6 318-323 298-303 (418)
329 TIGR03185 DNA_S_dndD DNA sulfu 45.0 4.2E+02 0.009 28.3 27.2 29 160-188 260-288 (650)
330 COG2900 SlyX Uncharacterized p 44.8 1.5E+02 0.0032 23.0 8.4 47 166-212 5-51 (72)
331 PF07111 HCR: Alpha helical co 44.7 4.6E+02 0.01 28.7 19.9 20 309-328 469-488 (739)
332 PF01920 Prefoldin_2: Prefoldi 44.5 98 0.0021 24.3 6.6 40 168-207 61-100 (106)
333 COG1561 Uncharacterized stress 44.2 3.1E+02 0.0068 26.7 17.6 76 163-247 213-288 (290)
334 PF05622 HOOK: HOOK protein; 43.8 6.4 0.00014 42.5 -0.6 51 165-215 242-292 (713)
335 PF04201 TPD52: Tumour protein 43.5 2.4E+02 0.0052 25.2 10.8 40 168-207 28-67 (162)
336 TIGR02894 DNA_bind_RsfA transc 43.5 2E+02 0.0043 25.6 8.8 43 173-215 108-150 (161)
337 TIGR00255 conserved hypothetic 43.3 3.2E+02 0.0069 26.5 13.8 140 97-247 131-289 (291)
338 PRK00888 ftsB cell division pr 43.2 1E+02 0.0022 25.2 6.6 32 173-204 31-62 (105)
339 COG4477 EzrA Negative regulato 43.2 4.3E+02 0.0094 28.0 18.2 78 73-152 219-304 (570)
340 PF12761 End3: Actin cytoskele 42.7 2.7E+02 0.0059 25.6 12.2 24 96-119 98-121 (195)
341 PF13874 Nup54: Nucleoporin co 42.3 2.2E+02 0.0047 24.3 9.3 53 162-214 37-89 (141)
342 cd07643 I-BAR_IMD_MIM Inverse 41.9 3.1E+02 0.0066 25.9 11.7 51 97-147 93-147 (231)
343 PRK15396 murein lipoprotein; P 41.9 1.7E+02 0.0037 22.9 7.5 8 215-222 62-69 (78)
344 PF11932 DUF3450: Protein of u 41.7 2.9E+02 0.0064 25.6 17.9 43 166-208 60-102 (251)
345 PRK14473 F0F1 ATP synthase sub 41.6 2.3E+02 0.005 24.4 14.4 106 73-180 29-137 (164)
346 KOG4196 bZIP transcription fac 41.4 1.5E+02 0.0032 25.6 7.3 31 188-218 86-116 (135)
347 KOG0933 Structural maintenance 41.4 6E+02 0.013 29.2 22.9 67 97-163 247-313 (1174)
348 KOG0979 Structural maintenance 41.0 6E+02 0.013 29.1 18.2 133 94-229 159-299 (1072)
349 PF09738 DUF2051: Double stran 40.9 3.6E+02 0.0077 26.4 13.6 41 102-142 78-118 (302)
350 PRK03947 prefoldin subunit alp 40.9 2.2E+02 0.0047 23.9 12.2 43 168-210 5-47 (140)
351 PRK14472 F0F1 ATP synthase sub 40.7 2.5E+02 0.0054 24.6 14.5 115 73-187 39-172 (175)
352 PF03962 Mnd1: Mnd1 family; I 40.4 2.8E+02 0.006 25.0 12.9 11 77-87 32-42 (188)
353 COG2900 SlyX Uncharacterized p 40.1 1.4E+02 0.003 23.1 6.3 38 166-203 19-56 (72)
354 KOG4438 Centromere-associated 40.1 4.4E+02 0.0095 27.2 16.1 58 97-154 148-205 (446)
355 COG3599 DivIVA Cell division i 39.3 3.2E+02 0.0069 25.3 17.5 15 274-288 194-208 (212)
356 PF10481 CENP-F_N: Cenp-F N-te 39.1 3.7E+02 0.0081 26.1 12.8 16 101-116 18-33 (307)
357 PRK05431 seryl-tRNA synthetase 39.1 3.3E+02 0.0072 27.6 10.9 33 119-151 32-64 (425)
358 PF13763 DUF4167: Domain of un 38.9 1.7E+02 0.0038 23.0 6.9 43 134-176 35-77 (80)
359 PF12777 MT: Microtubule-bindi 38.9 3.2E+02 0.0068 26.8 10.5 28 119-146 197-224 (344)
360 PF05276 SH3BP5: SH3 domain-bi 38.6 3.5E+02 0.0075 25.6 16.8 102 93-210 115-218 (239)
361 PF06810 Phage_GP20: Phage min 38.5 2.7E+02 0.0059 24.3 10.8 13 274-286 120-132 (155)
362 COG4026 Uncharacterized protei 38.3 3.5E+02 0.0077 25.6 10.7 81 101-200 122-208 (290)
363 PF08172 CASP_C: CASP C termin 38.3 1.1E+02 0.0023 29.0 6.8 59 152-210 76-134 (248)
364 PRK10929 putative mechanosensi 38.2 6.9E+02 0.015 29.0 21.5 23 97-119 105-127 (1109)
365 PRK13461 F0F1 ATP synthase sub 38.2 2.6E+02 0.0056 24.0 14.3 50 97-146 32-81 (159)
366 COG0419 SbcC ATPase involved i 37.6 6.2E+02 0.013 28.2 18.7 10 237-246 482-491 (908)
367 PRK12472 hypothetical protein; 37.5 5.1E+02 0.011 27.2 15.6 99 107-210 210-310 (508)
368 PF04108 APG17: Autophagy prot 37.4 4.5E+02 0.0097 26.6 19.9 34 117-150 194-227 (412)
369 PRK11578 macrolide transporter 37.3 3.7E+02 0.0081 26.2 10.8 28 105-132 96-123 (370)
370 cd07595 BAR_RhoGAP_Rich-like T 37.1 3.6E+02 0.0078 25.4 15.1 36 73-108 89-125 (244)
371 COG0172 SerS Seryl-tRNA synthe 37.0 3.1E+02 0.0068 28.2 10.2 57 122-179 36-92 (429)
372 PF14282 FlxA: FlxA-like prote 36.8 2.3E+02 0.005 23.1 8.5 12 195-206 56-67 (106)
373 PRK06231 F0F1 ATP synthase sub 36.7 3.3E+02 0.0072 24.8 14.4 19 99-117 98-116 (205)
374 PF00170 bZIP_1: bZIP transcri 36.7 1.7E+02 0.0036 21.3 6.6 38 162-199 26-63 (64)
375 PRK08032 fliD flagellar cappin 36.5 2.1E+02 0.0045 29.4 9.1 54 123-191 407-460 (462)
376 TIGR02894 DNA_bind_RsfA transc 36.4 3.1E+02 0.0068 24.4 10.9 41 170-210 98-138 (161)
377 PF14346 DUF4398: Domain of un 36.3 2.2E+02 0.0047 22.6 11.0 58 101-167 17-74 (103)
378 PF05557 MAD: Mitotic checkpoi 36.1 85 0.0018 34.0 6.5 233 83-329 360-617 (722)
379 PRK14471 F0F1 ATP synthase sub 36.1 2.9E+02 0.0062 23.9 14.3 49 97-145 35-83 (164)
380 cd07623 BAR_SNX1_2 The Bin/Amp 36.1 3.5E+02 0.0075 24.8 18.2 124 73-210 78-202 (224)
381 PRK08453 fliD flagellar cappin 35.9 2E+02 0.0043 31.3 9.1 69 72-143 599-667 (673)
382 PF05659 RPW8: Arabidopsis bro 35.9 2.9E+02 0.0063 23.9 10.4 75 130-209 67-143 (147)
383 PF08946 Osmo_CC: Osmosensory 35.8 84 0.0018 22.2 4.1 32 174-212 10-41 (46)
384 PRK01773 hscB co-chaperone Hsc 35.7 3.2E+02 0.0069 24.3 11.1 47 129-175 118-164 (173)
385 PRK06569 F0F1 ATP synthase sub 35.7 3.1E+02 0.0067 24.2 15.2 85 73-160 31-119 (155)
386 PF13805 Pil1: Eisosome compon 35.6 4.1E+02 0.009 25.6 13.2 179 13-210 13-192 (271)
387 PF02994 Transposase_22: L1 tr 35.6 1.5E+02 0.0033 29.5 7.8 41 162-202 144-184 (370)
388 TIGR03825 FliH_bacil flagellar 35.5 3.8E+02 0.0081 25.1 21.4 51 105-155 41-92 (255)
389 PF10779 XhlA: Haemolysin XhlA 35.4 1.9E+02 0.0041 21.7 7.8 45 167-211 4-48 (71)
390 PF06216 RTBV_P46: Rice tungro 35.4 1.3E+02 0.0029 28.8 6.8 39 171-209 73-111 (389)
391 PF10805 DUF2730: Protein of u 35.3 2.2E+02 0.0048 23.2 7.4 14 168-181 48-61 (106)
392 PF07851 TMPIT: TMPIT-like pro 35.0 4.6E+02 0.01 26.0 11.2 13 128-140 10-22 (330)
393 PRK09841 cryptic autophosphory 35.0 6.2E+02 0.014 27.5 17.4 141 77-223 250-403 (726)
394 KOG0963 Transcription factor/C 35.0 6.1E+02 0.013 27.4 21.0 154 85-254 92-260 (629)
395 PRK15030 multidrug efflux syst 34.9 2.6E+02 0.0057 27.7 9.4 16 107-122 102-117 (397)
396 PF14282 FlxA: FlxA-like prote 34.6 2.5E+02 0.0055 22.8 8.1 12 199-210 53-64 (106)
397 PF09325 Vps5: Vps5 C terminal 34.4 3.4E+02 0.0075 24.3 16.8 63 116-178 122-186 (236)
398 PRK09343 prefoldin subunit bet 34.3 2.7E+02 0.0059 23.2 12.0 93 104-203 17-112 (121)
399 PF02183 HALZ: Homeobox associ 34.1 1.6E+02 0.0035 20.5 6.0 37 174-210 3-39 (45)
400 PF07851 TMPIT: TMPIT-like pro 34.0 4.8E+02 0.01 25.9 11.5 48 164-211 6-53 (330)
401 TIGR02338 gimC_beta prefoldin, 34.0 2.6E+02 0.0056 22.7 11.3 93 103-202 12-107 (110)
402 PRK10807 paraquat-inducible pr 34.0 4.8E+02 0.01 27.5 11.5 43 69-118 410-453 (547)
403 PF04849 HAP1_N: HAP1 N-termin 33.9 4.7E+02 0.01 25.7 17.3 107 97-218 163-269 (306)
404 PF04380 BMFP: Membrane fusoge 33.9 2.2E+02 0.0048 22.0 9.1 68 138-205 8-79 (79)
405 PRK03598 putative efflux pump 33.8 4.3E+02 0.0094 25.3 13.0 6 278-283 250-255 (331)
406 PF15070 GOLGA2L5: Putative go 33.7 6.4E+02 0.014 27.2 19.0 84 128-212 121-217 (617)
407 PF15466 DUF4635: Domain of un 33.6 70 0.0015 27.1 4.1 40 73-112 84-123 (135)
408 PF09727 CortBP2: Cortactin-bi 33.6 3.8E+02 0.0082 24.6 15.8 104 92-210 79-182 (192)
409 PF13815 Dzip-like_N: Iguana/D 33.5 2.5E+02 0.0055 23.1 7.6 39 166-204 77-115 (118)
410 PF06632 XRCC4: DNA double-str 33.4 5E+02 0.011 25.9 14.3 51 89-139 118-168 (342)
411 COG0216 PrfA Protein chain rel 33.3 5.1E+02 0.011 26.0 12.1 29 70-99 2-30 (363)
412 PF10146 zf-C4H2: Zinc finger- 32.9 4.2E+02 0.009 24.8 16.3 43 166-208 36-78 (230)
413 KOG1655 Protein involved in va 32.7 4.1E+02 0.0088 24.6 12.6 15 311-325 158-172 (218)
414 PF12958 DUF3847: Protein of u 32.4 2.6E+02 0.0056 22.3 7.1 40 179-218 4-43 (86)
415 KOG2264 Exostosin EXT1L [Signa 32.4 1.7E+02 0.0037 31.3 7.5 18 25-42 13-32 (907)
416 PF05377 FlaC_arch: Flagella a 32.3 2E+02 0.0044 21.1 6.9 41 172-212 3-43 (55)
417 PF06818 Fez1: Fez1; InterPro 32.3 4.1E+02 0.0089 24.5 16.3 95 96-209 12-106 (202)
418 TIGR03321 alt_F1F0_F0_B altern 32.2 4.2E+02 0.0091 24.6 13.5 101 73-173 26-134 (246)
419 KOG2751 Beclin-like protein [S 32.1 5.9E+02 0.013 26.3 13.6 143 73-216 118-272 (447)
420 PF07195 FliD_C: Flagellar hoo 32.0 2.9E+02 0.0064 25.4 8.6 66 72-140 171-236 (239)
421 PRK11820 hypothetical protein; 31.8 4.8E+02 0.01 25.2 15.1 140 97-247 129-286 (288)
422 PF12329 TMF_DNA_bd: TATA elem 31.7 2.4E+02 0.0051 21.6 9.4 45 168-212 11-55 (74)
423 KOG0288 WD40 repeat protein Ti 31.5 6E+02 0.013 26.2 16.8 39 100-138 12-50 (459)
424 PRK13460 F0F1 ATP synthase sub 31.5 3.6E+02 0.0077 23.6 13.4 116 73-188 37-171 (173)
425 KOG4182 Uncharacterized conser 31.5 6.1E+02 0.013 26.9 11.2 58 231-288 104-166 (828)
426 PRK15362 pathogenicity island 31.5 2.5E+02 0.0054 29.1 8.3 82 72-153 61-151 (473)
427 PRK09973 putative outer membra 31.5 2.7E+02 0.0058 22.2 7.7 28 185-212 26-53 (85)
428 PF06320 GCN5L1: GCN5-like pro 31.4 3.1E+02 0.0068 23.0 11.7 76 113-190 38-113 (121)
429 PF08946 Osmo_CC: Osmosensory 31.3 1.1E+02 0.0024 21.6 4.1 12 168-179 18-29 (46)
430 PF06698 DUF1192: Protein of u 31.3 1.8E+02 0.004 21.5 5.6 27 185-211 23-49 (59)
431 PF10212 TTKRSYEDQ: Predicted 31.1 6.5E+02 0.014 26.6 15.5 30 173-202 484-513 (518)
432 COG3334 Uncharacterized conser 31.0 4.2E+02 0.0091 24.3 11.7 74 168-244 69-146 (192)
433 PF04728 LPP: Lipoprotein leuc 31.0 2.2E+02 0.0047 21.0 8.5 29 185-213 5-33 (56)
434 TIGR00293 prefoldin, archaeal 30.7 1.6E+02 0.0035 24.2 6.0 37 173-209 3-39 (126)
435 PF11471 Sugarporin_N: Maltopo 30.5 1.2E+02 0.0026 22.5 4.5 19 189-207 31-49 (60)
436 PF04394 DUF536: Protein of un 30.4 1.9E+02 0.0042 20.2 6.4 36 167-202 8-43 (45)
437 PRK14139 heat shock protein Gr 30.3 3.2E+02 0.007 24.7 8.2 40 168-207 31-70 (185)
438 TIGR02971 heterocyst_DevB ABC 30.2 4.8E+02 0.01 24.8 14.2 6 278-283 250-255 (327)
439 COG1730 GIM5 Predicted prefold 30.1 3.7E+02 0.008 23.4 8.3 42 173-214 91-132 (145)
440 KOG4673 Transcription factor T 30.1 7.9E+02 0.017 27.2 22.2 44 175-218 579-626 (961)
441 KOG1916 Nuclear protein, conta 30.0 9E+02 0.019 27.8 15.7 29 104-132 879-907 (1283)
442 PF12329 TMF_DNA_bd: TATA elem 29.9 2.5E+02 0.0055 21.4 9.3 35 174-208 24-58 (74)
443 cd00632 Prefoldin_beta Prefold 29.7 2.9E+02 0.0064 22.1 12.0 93 103-202 8-103 (105)
444 KOG0243 Kinesin-like protein [ 29.7 9.1E+02 0.02 27.8 15.7 100 103-202 406-516 (1041)
445 PRK00286 xseA exodeoxyribonucl 29.5 6E+02 0.013 25.6 14.3 23 231-253 345-367 (438)
446 PF08232 Striatin: Striatin fa 29.4 2E+02 0.0043 24.6 6.4 47 163-209 26-72 (134)
447 PF15294 Leu_zip: Leucine zipp 29.4 5.3E+02 0.012 25.0 13.7 104 96-205 127-230 (278)
448 PRK12705 hypothetical protein; 29.3 6.9E+02 0.015 26.3 16.4 18 127-144 68-85 (508)
449 cd07651 F-BAR_PombeCdc15_like 29.1 4.5E+02 0.0098 24.1 17.9 39 72-113 56-94 (236)
450 PRK15136 multidrug efflux syst 29.0 5.9E+02 0.013 25.3 13.9 19 105-123 96-114 (390)
451 PRK14127 cell division protein 28.9 2.1E+02 0.0045 23.8 6.2 40 177-216 31-70 (109)
452 PF06156 DUF972: Protein of un 28.8 3.3E+02 0.0072 22.4 8.4 48 165-212 4-51 (107)
453 KOG2662 Magnesium transporters 28.8 6.5E+02 0.014 25.8 15.1 82 125-207 223-335 (414)
454 PF05278 PEARLI-4: Arabidopsis 28.7 5.4E+02 0.012 24.8 12.6 89 81-188 171-261 (269)
455 PRK10361 DNA recombination pro 28.6 7E+02 0.015 26.1 20.0 92 104-195 63-159 (475)
456 PRK07352 F0F1 ATP synthase sub 28.6 4E+02 0.0087 23.3 13.0 97 82-180 52-148 (174)
457 PHA01750 hypothetical protein 28.5 2E+02 0.0043 22.0 5.4 31 176-206 42-72 (75)
458 PF08898 DUF1843: Domain of un 28.4 1.4E+02 0.003 21.7 4.4 45 146-197 8-52 (53)
459 KOG4196 bZIP transcription fac 28.4 2.9E+02 0.0062 23.9 7.0 39 162-200 74-112 (135)
460 PF12308 Noelin-1: Neurogenesi 28.3 3.2E+02 0.0069 22.5 7.0 53 160-212 45-97 (101)
461 PF13779 DUF4175: Domain of un 28.3 4.9E+02 0.011 29.1 10.7 37 135-171 537-573 (820)
462 cd07598 BAR_FAM92 The Bin/Amph 28.2 4.7E+02 0.01 24.0 20.4 65 93-157 3-67 (211)
463 PRK04654 sec-independent trans 27.8 5E+02 0.011 24.2 10.2 26 133-158 27-52 (214)
464 PLN02678 seryl-tRNA synthetase 27.7 6.9E+02 0.015 25.8 12.5 22 124-145 42-63 (448)
465 COG1340 Uncharacterized archae 27.4 5.9E+02 0.013 24.9 21.5 141 71-218 110-256 (294)
466 CHL00019 atpF ATP synthase CF0 27.3 4.4E+02 0.0094 23.3 14.2 117 73-189 45-180 (184)
467 PRK06975 bifunctional uroporph 27.3 8.1E+02 0.018 26.4 16.8 21 228-248 481-501 (656)
468 PF05266 DUF724: Protein of un 27.3 4.7E+02 0.01 23.7 12.8 26 121-146 123-148 (190)
469 KOG4571 Activating transcripti 27.2 3.1E+02 0.0066 26.8 7.8 42 165-206 244-285 (294)
470 PF02841 GBP_C: Guanylate-bind 27.1 5.6E+02 0.012 24.4 19.8 10 96-105 175-184 (297)
471 cd07673 F-BAR_FCHO2 The F-BAR 27.1 5.5E+02 0.012 24.3 17.6 62 234-299 194-263 (269)
472 PRK06798 fliD flagellar cappin 26.8 3.9E+02 0.0084 27.4 9.1 69 72-144 358-426 (440)
473 PRK14154 heat shock protein Gr 26.7 5.2E+02 0.011 23.9 9.5 65 171-241 54-118 (208)
474 PF13942 Lipoprotein_20: YfhG 26.7 4.2E+02 0.0091 24.0 8.1 44 171-214 118-161 (179)
475 cd07614 BAR_Endophilin_A2 The 26.7 5.3E+02 0.011 24.1 12.6 36 74-109 97-133 (223)
476 PRK09973 putative outer membra 26.5 3.3E+02 0.0072 21.7 7.0 36 177-212 25-60 (85)
477 PF06936 Selenoprotein_S: Sele 26.4 5E+02 0.011 23.7 10.1 11 71-81 48-58 (190)
478 PF04977 DivIC: Septum formati 26.4 2.7E+02 0.0058 20.5 6.1 45 102-146 18-62 (80)
479 PHA02047 phage lambda Rz1-like 26.3 3.7E+02 0.0079 22.1 6.9 30 169-198 34-63 (101)
480 cd07651 F-BAR_PombeCdc15_like 26.3 5.1E+02 0.011 23.7 17.6 36 104-139 103-138 (236)
481 PF05325 DUF730: Protein of un 26.2 3.1E+02 0.0068 22.5 6.6 73 55-141 46-118 (122)
482 KOG1003 Actin filament-coating 26.0 5.3E+02 0.011 23.8 19.3 22 96-117 27-48 (205)
483 PRK12704 phosphodiesterase; Pr 25.9 7.9E+02 0.017 25.8 19.6 9 309-317 280-288 (520)
484 KOG0946 ER-Golgi vesicle-tethe 25.8 9.9E+02 0.021 26.9 23.7 15 275-289 853-867 (970)
485 KOG3564 GTPase-activating prot 25.7 4.6E+02 0.01 27.6 9.2 41 172-212 45-85 (604)
486 PRK05892 nucleoside diphosphat 25.7 1.9E+02 0.004 25.4 5.7 62 190-254 11-72 (158)
487 PRK10246 exonuclease subunit S 25.6 1E+03 0.023 27.1 21.8 45 105-149 714-758 (1047)
488 PF07889 DUF1664: Protein of u 25.6 4.2E+02 0.0092 22.5 12.8 95 74-197 30-124 (126)
489 PF04899 MbeD_MobD: MbeD/MobD 25.5 3.1E+02 0.0067 21.0 9.8 68 138-209 1-68 (70)
490 PF13949 ALIX_LYPXL_bnd: ALIX 25.5 5.6E+02 0.012 23.9 10.6 161 83-247 101-266 (296)
491 KOG4593 Mitotic checkpoint pro 25.4 9.3E+02 0.02 26.4 20.2 166 84-253 141-309 (716)
492 PF12958 DUF3847: Protein of u 25.4 3E+02 0.0065 21.9 6.3 38 171-208 3-43 (86)
493 PRK13453 F0F1 ATP synthase sub 25.3 4.7E+02 0.01 22.9 14.4 106 73-180 39-147 (173)
494 PRK09841 cryptic autophosphory 25.3 9E+02 0.02 26.3 20.1 131 94-226 238-389 (726)
495 PF00170 bZIP_1: bZIP transcri 25.2 2.7E+02 0.0058 20.2 8.1 47 159-205 16-62 (64)
496 PF05911 DUF869: Plant protein 25.2 9.7E+02 0.021 26.6 19.3 169 81-253 500-690 (769)
497 KOG4643 Uncharacterized coiled 25.2 1.1E+03 0.024 27.2 16.4 126 97-222 180-319 (1195)
498 PF15450 DUF4631: Domain of un 25.0 8.4E+02 0.018 25.8 18.8 155 105-270 197-370 (531)
499 PF13747 DUF4164: Domain of un 25.0 3.5E+02 0.0076 21.4 12.3 85 119-212 5-89 (89)
500 PF04568 IATP: Mitochondrial A 24.9 2.7E+02 0.0058 22.8 6.1 42 152-193 55-100 (100)
No 1
>PRK10698 phage shock protein PspA; Provisional
Probab=100.00 E-value=2.5e-47 Score=351.05 Aligned_cols=219 Identities=31% Similarity=0.498 Sum_probs=213.3
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020141 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 150 (330)
Q Consensus 71 Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 150 (330)
||||+||+++|+|++|+++|++|||++||+|+|+||++.+.+++.+++++++.++++++++.++...+.+|+.+|..||.
T Consensus 1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020141 151 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 230 (330)
Q Consensus 151 ~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~ 230 (330)
+|+|||||+||.+|..+..++..|+.+++.+...+++|+.++..|+.+|.+++.++.+|++|+++|+++.++++.+++++
T Consensus 81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~ 160 (222)
T PRK10698 81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhccC-CHHHHHHHHHHHcCCC
Q 020141 231 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETS-SVDDDLANLKKELSGS 289 (330)
Q Consensus 231 ~~sa~~~feRmEeki~~~EA~aeA~~eL~~~~Ld~k~~~le~~-~vd~eLa~LKa~l~~~ 289 (330)
+++++..|+|||+||+++|++++|+....+++|+.+|+.|+.+ .||++|++||++|+..
T Consensus 161 ~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~LK~~~~~~ 220 (222)
T PRK10698 161 LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAALKAKMKQD 220 (222)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 9999999999999999999999999776667899999999865 6999999999998653
No 2
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=100.00 E-value=9.1e-46 Score=340.00 Aligned_cols=218 Identities=35% Similarity=0.539 Sum_probs=212.4
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020141 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 150 (330)
Q Consensus 71 Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 150 (330)
||||+||+++|+|++|+++|++|||++||+|+||||+++|.+++++++++++.++++++++.++...+.+|+++|..||+
T Consensus 1 M~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 1 MGIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020141 151 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 230 (330)
Q Consensus 151 ~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~ 230 (330)
+|+||||++||.++..++..+..|+.+++.+...+++|+..+..|+.+|.+++.++.+|++|.+.|+++..++..+++++
T Consensus 81 ~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~ 160 (219)
T TIGR02977 81 KGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGR 160 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhcc-CCHHHHHHHHHHHcCC
Q 020141 231 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLET-SSVDDDLANLKKELSG 288 (330)
Q Consensus 231 ~~sa~~~feRmEeki~~~EA~aeA~~eL~~~~Ld~k~~~le~-~~vd~eLa~LKa~l~~ 288 (330)
.+++...|+|||+||.++|+.+++....++++|+.+|+.++. ++||++|++||++|++
T Consensus 161 ~~~a~~~fer~e~ki~~~ea~aea~~~~~~~~l~~~l~~l~~~~~vd~eLa~LK~~~~~ 219 (219)
T TIGR02977 161 SDEAMARFEQYERRVDELEAQAESYDLGRKPSLEDEFAELEADDEIERELAALKAKMKK 219 (219)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHhcCCChHHHHHHHHHhhhCC
Confidence 999999999999999999999999976557889999999986 4799999999999863
No 3
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-43 Score=322.79 Aligned_cols=218 Identities=47% Similarity=0.637 Sum_probs=213.3
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020141 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 150 (330)
Q Consensus 71 Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 150 (330)
||||+||+++|+|++|+++|++|||.+||+|+||||+.+|.++++.++++++.+++++++|+++...+.+|+.+|+.||.
T Consensus 1 M~i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~ 80 (225)
T COG1842 1 MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ 80 (225)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020141 151 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 230 (330)
Q Consensus 151 ~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~ 230 (330)
+|+|+||+++|.+++.+++.+..++.++.++...+++|+.++..|+.||.+++.++..+++|...++|+.+|++.+++++
T Consensus 81 ~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s 160 (225)
T COG1842 81 AGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGS 160 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcc---cCCChhHHHhhhcc-CCHHHHHHHHHHHcCC
Q 020141 231 TSSALSAFEKMEEKVLTMESQADSLNQL---TTDDLEGKFALLET-SSVDDDLANLKKELSG 288 (330)
Q Consensus 231 ~~sa~~~feRmEeki~~~EA~aeA~~eL---~~~~Ld~k~~~le~-~~vd~eLa~LKa~l~~ 288 (330)
++++.+.|+||++||+.+|++++++.+| .+++++.+|+.++. ..|+++|++||+++.+
T Consensus 161 ~~sa~~~fer~e~kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~~v~~~La~lka~~~~ 222 (225)
T COG1842 161 SSSAMAAFERMEEKIEEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARMKG 222 (225)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHhhccCcccHHHHHHHhcccccHHHHHHHHHHhhcc
Confidence 9999999999999999999999999975 47899999999985 6899999999999876
No 4
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=100.00 E-value=9.6e-43 Score=319.20 Aligned_cols=216 Identities=46% Similarity=0.670 Sum_probs=210.5
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020141 72 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 151 (330)
Q Consensus 72 sif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 151 (330)
|||+||+++|+|++|+++|++|||++||+|+||||++.|.+++.+++.+++.+++++++++++...+.+|+.+|..||.+
T Consensus 1 ~lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 1 GLFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 020141 152 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNT 231 (330)
Q Consensus 152 G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~ 231 (330)
|+||||+.||.++..++.++..|+.+++.+..++++|+..+.+++.+|.++++++..|++|.++|+++.+++..+++++.
T Consensus 81 g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~ 160 (221)
T PF04012_consen 81 GREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSV 160 (221)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhhccc--CCChhHHHhhhcc-CCH-HHHHHHHHHHcC
Q 020141 232 SSALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGKFALLET-SSV-DDDLANLKKELS 287 (330)
Q Consensus 232 ~sa~~~feRmEeki~~~EA~aeA~~eL~--~~~Ld~k~~~le~-~~v-d~eLa~LKa~l~ 287 (330)
+++...|+||++||..++++++++.++. ..+++.+|+.++. ..+ +++|++||++.+
T Consensus 161 ~~a~~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~~~~~~~~~~~La~LK~~~~ 220 (221)
T PF04012_consen 161 SSAMDSFERMEEKIEEMEARAEASAELADSDQDLEAELEELERDSSVSEDELAALKAKQG 220 (221)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCcchHHHHHHHHhHcc
Confidence 9999999999999999999999999997 3579999999985 568 999999999875
No 5
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=98.61 E-value=8.1e-06 Score=73.95 Aligned_cols=149 Identities=18% Similarity=0.231 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 117 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 196 (330)
Q Consensus 117 lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le 196 (330)
+..+......|+++...++..+++....|...+..|+-+-|..||.+|+.|+.++..+..++..++.++..+
T Consensus 29 Il~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~i-------- 100 (191)
T PTZ00446 29 ILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINL-------- 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 333444445566666677777777777888899999999999999999999999999999988877777655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcc-----cCCChhHHHhhhc
Q 020141 197 SKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQL-----TTDDLEGKFALLE 271 (330)
Q Consensus 197 ~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~aeA~~eL-----~~~~Ld~k~~~le 271 (330)
+.+.....++.+-...+++.+.++. .++.+...+.++.|++.++..+.-.++++.- ..++|+.+|..|+
T Consensus 101 ---E~a~~~~ev~~aLk~g~~aLK~~~k---~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le 174 (191)
T PTZ00446 101 ---ENMHLHKIAVNALSYAANTHKKLNN---EINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLK 174 (191)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 6667778888888888888888875 5567778888888888888777777776532 2346777777777
Q ss_pred cCCHHHHH
Q 020141 272 TSSVDDDL 279 (330)
Q Consensus 272 ~~~vd~eL 279 (330)
...+|..|
T Consensus 175 ~e~l~~~l 182 (191)
T PTZ00446 175 EQTMEEKL 182 (191)
T ss_pred HHHHHHHH
Confidence 66666655
No 6
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=6.1e-05 Score=68.24 Aligned_cols=152 Identities=20% Similarity=0.309 Sum_probs=101.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 020141 153 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS 232 (330)
Q Consensus 153 ~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~ 232 (330)
+--.|..||.||+.|++++..+...+...+.+...| +.+..--++|.+.-..|+|.+.++. +++.+
T Consensus 59 NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~al-----------EnA~~n~Evl~~m~~~A~AmK~~h~---~mDiD 124 (221)
T KOG1656|consen 59 NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREAL-----------ENANTNTEVLDAMGSAAKAMKAAHK---NMDID 124 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------HcccccHHHHHHHHHHHHHHHHHHh---ccChh
Confidence 455888999999999999999988888777776655 4455566778888888888777765 77788
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhhcc-------cCCChhHHHhhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCC
Q 020141 233 SALSAFEKMEEKVLTMESQADSLNQL-------TTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASST 305 (330)
Q Consensus 233 sa~~~feRmEeki~~~EA~aeA~~eL-------~~~~Ld~k~~~le~~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~ 305 (330)
...+.++.|.+.++-++--.+|+... ..|+|..+|..|+....|.+|-... .++..||+-++..-++
T Consensus 125 kVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~------~p~v~LP~vPs~~lPa 198 (221)
T KOG1656|consen 125 KVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIR------APPVPLPDVPSIALPA 198 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccC------CCCCCCCCCCccccCc
Confidence 88899999999999988888887653 2356667777776655555553322 3345555443322222
Q ss_pred CCCCCCChhhHHHHHHHHH
Q 020141 306 NTAFPFRDAEIEKELNELR 324 (330)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~ 324 (330)
.++---+..|.+.+|.+|-
T Consensus 199 ~~~~~~~a~E~d~~l~~l~ 217 (221)
T KOG1656|consen 199 KPASRPKAEEDDDDLKELA 217 (221)
T ss_pred ccccCCCcchhhhHHHHHH
Confidence 2111223445555555553
No 7
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=98.19 E-value=7.5e-05 Score=65.07 Aligned_cols=164 Identities=23% Similarity=0.361 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 116 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 195 (330)
Q Consensus 116 ~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~L 195 (330)
++..+.....++++++..++.++.+...+|..++++|+.+.|+-+|.+++.++..+..+...+. ++..+
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~-----------~l~~~ 70 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLS-----------NLESV 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 3556677788899999999999999999999999999999999999999999988777765544 44445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhccCCH
Q 020141 196 ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSV 275 (330)
Q Consensus 196 e~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~aeA~~eL~~~~Ld~k~~~le~~~v 275 (330)
..+|+.+......+.+-..+..+-..++. +++.......++.+++.++.++.-.+++..- +..- .....+++
T Consensus 71 ~~~ie~a~~~~~v~~al~~~~~~Lk~~~~---~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~----~~~~-~~~dd~el 142 (171)
T PF03357_consen 71 LLQIETAQSNQQVVKALKQSSKALKKINK---QINLDKVEKLMDDFQEEMEDQDEISEALSDS----MDQV-DDVDDEEL 142 (171)
T ss_dssp HHHHHHHHHHHHHSSS----SHHHHHHHH---STTSCCHHHHHHHHHHHHHHHTS---------------------TTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc----ccCC-CCCCHHHH
Confidence 55566777777777777777777666655 5566677777777777776665444444321 1100 11123468
Q ss_pred HHHHHHHHHHcCCCCC-CCCCCCC
Q 020141 276 DDDLANLKKELSGSSK-KGELPPG 298 (330)
Q Consensus 276 d~eLa~LKa~l~~~~~-~~~~~~~ 298 (330)
+++|..|-.+...... ...||.-
T Consensus 143 e~eL~~l~~e~~~~~~~~~~lp~~ 166 (171)
T PF03357_consen 143 EEELEQLEDEIEEEEEEKQQLPSV 166 (171)
T ss_dssp TCHHHHHHHCCCTTS--SS-SS--
T ss_pred HHHHHHHHHHHhhhhhccccCCcC
Confidence 8999999998776542 4444443
No 8
>PTZ00464 SNF-7-like protein; Provisional
Probab=98.16 E-value=0.00093 Score=61.59 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 020141 154 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSS 233 (330)
Q Consensus 154 EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~s 233 (330)
-.-|..+|.+|+.|+.++..+..++..++..+. .|+.++....++.+-...+++.+.++. .++.+.
T Consensus 60 K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~-----------~ie~a~~~~~vv~amk~g~kaLK~~~k---~i~id~ 125 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF-----------TTESVKDTKVQVDAMKQAAKTLKKQFK---KLNVDK 125 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHH
Confidence 457888999999999998888888766555554 446677778888888888888887776 456777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhccc--CCChhHHHhhhccCCHHHHHHHHHHHcCC
Q 020141 234 ALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGKFALLETSSVDDDLANLKKELSG 288 (330)
Q Consensus 234 a~~~feRmEeki~~~EA~aeA~~eL~--~~~Ld~k~~~le~~~vd~eLa~LKa~l~~ 288 (330)
..+.++.|++.++..+.-.+++..-. ++++|. +++++||+.|-.++..
T Consensus 126 Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DE-------dELe~ELe~Le~e~~~ 175 (211)
T PTZ00464 126 VEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDE-------DEMLGELDALDFDMEK 175 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCH-------HHHHHHHHHHHHHHhc
Confidence 77788888888777776666665421 122221 2578888888777643
No 9
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00093 Score=66.79 Aligned_cols=190 Identities=18% Similarity=0.282 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 110 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 189 (330)
Q Consensus 110 L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk 189 (330)
+.+.-.+|+.++.....+.++++.+++++++..++++.|++.|.-.+|..-|++++-.+..++..-..+.+..
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~------- 300 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLE------- 300 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------
Confidence 5566778888888999999999999999999999999999999999999999999999998887776665443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhccc--CCChhHHH
Q 020141 190 SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGKF 267 (330)
Q Consensus 190 ~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~aeA~~eL~--~~~Ld~k~ 267 (330)
.+-++|.....-+..+.|-.....|-+.+... +.+++-+.+-++.+++-+++.+---++++.-. ..+++++
T Consensus 301 ----~vl~~Id~s~~nkvvl~AyksGs~alK~il~~--~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de- 373 (439)
T KOG2911|consen 301 ----TVLSQIDNSQTNKVVLQAYKSGSEALKAILAQ--GGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDE- 373 (439)
T ss_pred ----HHHHHHHhhcccHHHHHHHHHhHHHHHHHHhc--cCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchH-
Confidence 34455677777777777777777776666544 33456677888888888887776555655432 2333333
Q ss_pred hhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCC--CChhhHHHHHHHHHH
Q 020141 268 ALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFP--FRDAEIEKELNELRQ 325 (330)
Q Consensus 268 ~~le~~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 325 (330)
.++.||..|-....+. ..-.+|.+ |.+...+ |.|.++..++..|..
T Consensus 374 ------~lEkEL~~L~~D~~k~-e~~~lp~~-----~~sr~~~~r~sd~el~~~~~~le~ 421 (439)
T KOG2911|consen 374 ------DLEKELEDLEADEKKN-EDLVLPLN-----SVSRDFLKRLSDLELLTNEDSLEK 421 (439)
T ss_pred ------HHHHHHHHHHhccccC-CccCCCCC-----CchHHHhhhcchhhhccccchhhh
Confidence 5777887776653321 12223333 2222233 778888877666543
No 10
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.92 E-value=0.0035 Score=57.82 Aligned_cols=181 Identities=16% Similarity=0.177 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 020141 106 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR-----KSYADNANALKAQLDQ 180 (330)
Q Consensus 106 me~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk-----~~~e~~~~~le~qle~ 180 (330)
++.-+.+++..+..+...--..-.....++.++......+.. .++-|+.||..= ..+-.....++.++..
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~-----~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~ 103 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVAD-----WQEKAELALSKGREDLARAALIEKQKAQELAEA 103 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544555555555555554443 344555555421 1233355678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHHhHHHHHHHhh
Q 020141 181 QKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV----NTSSALSAFEKMEEKVLTMESQADSLN 256 (330)
Q Consensus 181 ~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~----~~~sa~~~feRmEeki~~~EA~aeA~~ 256 (330)
++.+++.++..+.+|+.+|.+++.++..++++...-.+..+.......+ +..+..++++.++. ++..-.+.+|..
T Consensus 104 l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer-~e~ki~~~ea~a 182 (219)
T TIGR02977 104 LERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQ-YERRVDELEAQA 182 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777766555444333 33455555555442 333344444444
Q ss_pred cccCCChhHHHhhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHhhh
Q 020141 257 QLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAK 328 (330)
Q Consensus 257 eL~~~~Ld~k~~~le~~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (330)
+... ...+++++++|+.|-. +++|+.||..|+.+++
T Consensus 183 ea~~--------~~~~~~l~~~l~~l~~----------------------------~~~vd~eLa~LK~~~~ 218 (219)
T TIGR02977 183 ESYD--------LGRKPSLEDEFAELEA----------------------------DDEIERELAALKAKMK 218 (219)
T ss_pred HHhh--------ccCCCCHHHHHHHhcC----------------------------CChHHHHHHHHHhhhC
Confidence 3211 1124568998887731 2459999999998874
No 11
>PRK10698 phage shock protein PspA; Provisional
Probab=97.56 E-value=0.022 Score=52.85 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHHh
Q 020141 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN----TSSALSAFEKMEEKVLT 247 (330)
Q Consensus 172 ~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~----~~sa~~~feRmEeki~~ 247 (330)
..+..++..++.+++.....+.+|+.++..++.++..++++...-.++.+.......++ ..+..++|.+++ +
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~----r 170 (222)
T PRK10698 95 QKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFE----S 170 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHH----H
Confidence 34788899999999999999999999999999999999999888877777666655443 445556665543 3
Q ss_pred HHHHH---HHhhcccCCChhHHHhhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHH
Q 020141 248 MESQA---DSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELR 324 (330)
Q Consensus 248 ~EA~a---eA~~eL~~~~Ld~k~~~le~~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (330)
||.+. ++..+.. ......+++++++.|.. +++|+.||..|+
T Consensus 171 mE~ki~~~Ea~aea~--------~~~~~~~l~~e~~~le~----------------------------~~~ve~ELa~LK 214 (222)
T PRK10698 171 FERRIDQMEAEAESH--------GFGKQKSLDQQFAELKA----------------------------DDEISEQLAALK 214 (222)
T ss_pred HHHHHHHHHHHHhHh--------hccCCCCHHHHHHHhhc----------------------------cchHHHHHHHHH
Confidence 44433 3333211 01123457777777631 246999999999
Q ss_pred Hhhh
Q 020141 325 QRAK 328 (330)
Q Consensus 325 ~~~~ 328 (330)
.++.
T Consensus 215 ~~~~ 218 (222)
T PRK10698 215 AKMK 218 (222)
T ss_pred HHhc
Confidence 8864
No 12
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=97.53 E-value=0.068 Score=49.81 Aligned_cols=193 Identities=16% Similarity=0.173 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHH-----HHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK--GEEDLAREALKR-----RKSYADNANAL 174 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~--G~EdLAreAL~r-----k~~~e~~~~~l 174 (330)
.|..+++-..-+.+.+-..-.....+.+.+.++.......+.+...+... -.+.=|+.||.. -...-.....|
T Consensus 18 ~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~l 97 (225)
T COG1842 18 LLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSL 97 (225)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33344444444444444444444444455555444444444444443222 224445555443 22345567789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHHhHHH
Q 020141 175 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN----TSSALSAFEKMEEKVLTMES 250 (330)
Q Consensus 175 e~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~----~~sa~~~feRmEeki~~~EA 250 (330)
+.++.....++..+...+.+|+..+..++.++..++++....++......+...++ ..+..++...+ +++...-.
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~f-er~e~kie 176 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAF-ERMEEKIE 176 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHH-HHHHHHHH
Confidence 99999999999999999999999999999999999999999988877766665443 34443333333 34444445
Q ss_pred HHHHhhcccCCChhHHHhhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHhhh
Q 020141 251 QADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAK 328 (330)
Q Consensus 251 ~aeA~~eL~~~~Ld~k~~~le~~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (330)
+.++..+ ...++....+..++++++.+.. | ..|+.+|..|+.+++
T Consensus 177 e~ea~a~-----~~~el~~~~~~dl~~e~a~~~~-------------~---------------~~v~~~La~lka~~~ 221 (225)
T COG1842 177 EREARAE-----AAAELAEGSGDDLDKEFAQAGA-------------Q---------------SAVDSRLAALKARMK 221 (225)
T ss_pred HHHHHHH-----HhHHhhccCcccHHHHHHHhcc-------------c---------------ccHHHHHHHHHHhhc
Confidence 5555443 2333333334578888887655 1 337888888887765
No 13
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.055 Score=49.16 Aligned_cols=204 Identities=16% Similarity=0.247 Sum_probs=102.4
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 020141 90 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 169 (330)
Q Consensus 90 dk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 169 (330)
.+.-.|..+|.+.-|.+......+.+....+-.+.|.+-..++ .--+.|+.+-++-.+........
T Consensus 5 gk~~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIK--------------k~AK~gq~~A~KimAkdLvRtR~ 70 (224)
T KOG3230|consen 5 GKKKTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIK--------------KTAKQGQMDAVKIMAKDLVRTRR 70 (224)
T ss_pred cCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHcccHHHHHHHHHHHHHHHH
Confidence 3455899899888888887777766655544444443332222 22356777665544332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTME 249 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~E 249 (330)
+ + ..+..++.+|+-.--+..+|++....+++.+-+...+.++|-.-....+.+|-...+...
T Consensus 71 ~--------------i----~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQs 132 (224)
T KOG3230|consen 71 Y--------------I----KKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQS 132 (224)
T ss_pred H--------------H----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 2 2 122334455555555666666666677776666666666653322334444433333322
Q ss_pred HHHHHhhcccCCChhHHHhhhcc----C-CHHHHHHHHHHHcC----CCCC-CCCCCCCC-----CcCCCCCCCCCCChh
Q 020141 250 SQADSLNQLTTDDLEGKFALLET----S-SVDDDLANLKKELS----GSSK-KGELPPGR-----AAASSTNTAFPFRDA 314 (330)
Q Consensus 250 A~aeA~~eL~~~~Ld~k~~~le~----~-~vd~eLa~LKa~l~----~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~ 314 (330)
...+-..|+-++.+|+-+..-+. + =|+.+|..|--.++ .-+. .|.+|-|. .+.......-.=-|.
T Consensus 133 e~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dd 212 (224)
T KOG3230|consen 133 EIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADD 212 (224)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccccccccCCCchh
Confidence 22222222222344444432221 1 25667776655443 2211 34444442 221111111122378
Q ss_pred hHHHHHHHHHH
Q 020141 315 EIEKELNELRQ 325 (330)
Q Consensus 315 ~~~~~~~~~~~ 325 (330)
++++-|+.||+
T Consensus 213 dLqaRL~~Lrk 223 (224)
T KOG3230|consen 213 DLQARLDNLRK 223 (224)
T ss_pred HHHHHHHHHhc
Confidence 89999999996
No 14
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.45 E-value=0.027 Score=51.60 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 020141 104 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR-----RKSYADNANALKAQL 178 (330)
Q Consensus 104 rdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r-----k~~~e~~~~~le~ql 178 (330)
.-++..|.+++..+..+...-.........++.++......+.. .++-|..||.. -..+-.....++.++
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~-----~~~~A~~Al~~g~edLAr~al~~k~~~e~~~ 100 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK-----WEKQAELALAAGREDLAREALQRKADLEEQA 100 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555444443 23445555543 234555667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020141 179 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 230 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~ 230 (330)
+.++.+++.+...+..|+..|.+++.++..++.+.....++..+......++
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~ 152 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVN 152 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999888888877766665543
No 15
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=97.03 E-value=0.24 Score=44.89 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 123 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 188 (330)
Q Consensus 123 ~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~L 188 (330)
++..+.+=..+++..+..-...|+..++.|+.|-|+-+|.+|..++.-+..-..++-..++.+..+
T Consensus 24 QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdi 89 (209)
T KOG2910|consen 24 QRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDI 89 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444555556788899999999999999999999988777777766666555544
No 16
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=0.43 Score=53.37 Aligned_cols=146 Identities=19% Similarity=0.278 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
+++.+++++..+..++-.+..+.+.-+++...++.++.++..++..+. ..-.+ ..+....+++++.++.++
T Consensus 804 ~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~---k~~~d------~~~l~~~~~~ie~l~kE~ 874 (1293)
T KOG0996|consen 804 LEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL---KKVVD------KKRLKELEEQIEELKKEV 874 (1293)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCc------HHHHHHHHHHHHHHHHHH
Confidence 555666666666666666777777777777777777777777776621 11111 123334456666666666
Q ss_pred HHHH------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 020141 179 DQQK------NVVNNLVSNTRLL--------ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEK 244 (330)
Q Consensus 179 e~~~------~~v~~Lk~~l~~L--------e~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEek 244 (330)
+.+. +++..|+..+..+ +.+++....+++.+.+..+...+..+ .++.+...+...+.+++..
T Consensus 875 e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~----~s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 875 EELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIK----TSDRNIAKAQKKLSELERE 950 (1293)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHh----cCcccHHHHHHHHHHHHHH
Confidence 6663 3344444443333 45555566666666554443333222 1233344556677777777
Q ss_pred HHhHHHHHHHhhc
Q 020141 245 VLTMESQADSLNQ 257 (330)
Q Consensus 245 i~~~EA~aeA~~e 257 (330)
+..++.+.+.+.+
T Consensus 951 ~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 951 IEDTEKELDDLTE 963 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666544
No 17
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.57 E-value=1.6 Score=47.84 Aligned_cols=125 Identities=16% Similarity=0.260 Sum_probs=69.7
Q ss_pred ccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 020141 69 TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE---DWYRKA 145 (330)
Q Consensus 69 ~~Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~---~~e~rA 145 (330)
+.|++-..|+++-.--=.--+.+.||..++.+ +..|.=++.+...--.++|..+-.|++++.+.+.+.. +|.++-
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~E--lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~ 302 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKE--LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERY 302 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44665555555443333333556778887766 4466666666666667777777778888776655443 333332
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 146 QLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 196 (330)
Q Consensus 146 ~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le 196 (330)
..-+.---|.. .-+--.|.-+++.++.|+..++..+..++.|..++..|+
T Consensus 303 k~emad~ad~i-EmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 303 KEEMADTADAI-EMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111111100 112234555666677777777777777766666666443
No 18
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.55 E-value=0.76 Score=53.45 Aligned_cols=135 Identities=21% Similarity=0.234 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 149 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL 149 (330)
+|+.|-+...+++-.-. +-.| ..+|+.. -..+....+++..+...-....++...+.++..++.+++.++..|.
T Consensus 258 lFk~lI~~~~~~~aad~--~r~~eERR~liEEA-ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 258 LFKHLITESTNYVAADY--MRHANERRVHLEEA-LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHhhhhhhhhHHHH--hhCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655555544333 3344 4777776 4677888888888888888888888888888888888888888876
Q ss_pred hcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 150 QKGEEDLA-REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 150 ~~G~EdLA-reAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
+.-...-- .....+...+...+..+...++.+...+..++..+..++.++..++.+...++
T Consensus 335 kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 335 DHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65332111 12244555556666666666666666666665555555555555544444443
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.38 E-value=0.99 Score=51.94 Aligned_cols=56 Identities=14% Similarity=0.314 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 160 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 160 AL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
.+.++..++.++..|...++.+...+..++..+..+..++..+..+++.++.+.+.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET 934 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999988888888888887766443
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=96.17 E-value=2.5 Score=46.25 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 114 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 193 (330)
Q Consensus 114 r~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~ 193 (330)
...+.........++.++..++..+.+|...+..+...-.+ +..+...+..++..+...+.... .+..+...+.
T Consensus 529 ~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~ 602 (880)
T PRK02224 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE-----AREEVAELNSKLAELKERIESLE-RIRTLLAAIA 602 (880)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33344444444555556666666666666555554333222 22344455555555555555555 3555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020141 194 LLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 194 ~Le~Ki~e~k~k~~~LkAr 212 (330)
.++..+.+++.++..++.+
T Consensus 603 ~~~~~~~~~~~~~~~l~~~ 621 (880)
T PRK02224 603 DAEDEIERLREKREALAEL 621 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444433
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.06 E-value=0.67 Score=45.26 Aligned_cols=138 Identities=18% Similarity=0.237 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
|+..+..|+.+...+...+..+-...-.+..+++.+..++..+...+.. +...+- .+...+...+..+...+
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-~~~~D~-------~eL~~lr~eL~~~~~~i 225 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-IESCDQ-------EELEALRQELAEQKEEI 225 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCH-------HHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444555555555555555444433 222221 22233345555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Q 020141 179 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQ 251 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~ 251 (330)
+..+..+..++..+..++.+|++...++..+.+..+.++-.. +...++ ....+.++..++..++..
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~---~~~r~~----t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR---EECRGW----TRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCC----CHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666554443221 112232 234566677776666543
No 22
>PRK02224 chromosome segregation protein; Provisional
Probab=96.06 E-value=2.2 Score=46.69 Aligned_cols=14 Identities=7% Similarity=0.584 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHcC
Q 020141 274 SVDDDLANLKKELS 287 (330)
Q Consensus 274 ~vd~eLa~LKa~l~ 287 (330)
....+|..++..+.
T Consensus 388 ~l~~el~el~~~l~ 401 (880)
T PRK02224 388 ELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHh
Confidence 35556666666654
No 23
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.90 E-value=1.1 Score=49.95 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=14.2
Q ss_pred ChhhHHHHHHHHHHhhhc
Q 020141 312 RDAEIEKELNELRQRAKD 329 (330)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~ 329 (330)
...++..++++|+.+++.
T Consensus 952 ~~~~l~~~l~~l~~~i~~ 969 (1164)
T TIGR02169 952 SLEDVQAELQRVEEEIRA 969 (1164)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 456888999999888764
No 24
>PRK09039 hypothetical protein; Validated
Probab=95.89 E-value=1.4 Score=43.45 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 217 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak 217 (330)
+..|..+++.++.++..+...|..++.+..+.+.+++.|..+.+.+.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444443
No 25
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.87 E-value=3 Score=44.07 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 181 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~ 181 (330)
.++++...+.+....++.....+-.+.+-.+.+.+.-...+..+..+..--.+.+.++.+.+...+.+.-..++.++..+
T Consensus 122 e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~l 201 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEEL 201 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777888888888777777777777777777777777777777777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 182 KNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 182 ~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
+..+..|...+..-..++-+++++
T Consensus 202 e~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 202 EKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHh
Confidence 999988877777666666666665
No 26
>PRK09039 hypothetical protein; Validated
Probab=95.85 E-value=1.6 Score=43.15 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 213 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 213 (330)
+...+.+.+...+..+.....+|..|+.+|..|+.++..+...++....+.
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666666666666666666666666666666666666666666555
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.78 E-value=1.1 Score=41.64 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 136 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~ 136 (330)
...+...+.+....+.++...++.+...-..++..+.....
T Consensus 17 ~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ee 57 (237)
T PF00261_consen 17 LEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEE 57 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444444444444444444444444444444443333
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.73 E-value=3.8 Score=46.73 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 117 TAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 117 lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
+..+......++.++..+..++..|..+
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1163)
T COG1196 795 LEELEEELEEAERRLDALERELESLEQR 822 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444
No 29
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.56 E-value=4.8 Score=44.95 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 020141 98 ILEQAVLEMNDDLV 111 (330)
Q Consensus 98 mLeQ~Irdme~~L~ 111 (330)
-+++.+.+++..+.
T Consensus 269 ~~~~~~~~~~~~~~ 282 (1164)
T TIGR02169 269 EIEQLLEELNKKIK 282 (1164)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333434433333
No 30
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.26 E-value=3.7 Score=47.99 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 120 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR--RKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 197 (330)
Q Consensus 120 ~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r--k~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~ 197 (330)
....++...+++...+....+..+.. .-+...-..|.+++-.- ...+...+..+...+......+..+...+...+.
T Consensus 291 ~r~rk~eA~kkLe~tE~nL~rI~diL-~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~ee 369 (1486)
T PRK04863 291 LRRELYTSRRQLAAEQYRLVEMAREL-AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNE 369 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554444 22333333343333221 1222222223344444455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020141 198 KIQEARSKKDTLKARAQ 214 (330)
Q Consensus 198 Ki~e~k~k~~~LkAr~~ 214 (330)
++++.+.+...+.....
T Consensus 370 eLeeleeeleeleeEle 386 (1486)
T PRK04863 370 VVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544433
No 31
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.23 E-value=1.9 Score=43.70 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----HH---HHHHHHHHHHHHHHHHH
Q 020141 100 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE----ED---LAREALKRRKSYADNAN 172 (330)
Q Consensus 100 eQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~----Ed---LAreAL~rk~~~e~~~~ 172 (330)
+-.+.+.+++-.-+.....+.+.+.-+|..+|..++.+..+-+-+|..+|.--. |- ++|++-..+..++-.+.
T Consensus 228 erkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~q 307 (502)
T KOG0982|consen 228 ERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQ 307 (502)
T ss_pred HHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333345667777888888888888888888888888775322 22 33445445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
.++.........+..|+....+|....+.+-..++.+.-+
T Consensus 308 qleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlq 347 (502)
T KOG0982|consen 308 QLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQ 347 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5555555555555555555555555555555555544443
No 32
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=2.2 Score=38.06 Aligned_cols=191 Identities=21% Similarity=0.263 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQ 181 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~ 181 (330)
.+|+-..+|.++.+.+. ..+..++++-.+++-+|. .--..|+.|-+|-.+....++..|-.
T Consensus 12 ~~ren~ReLRkt~Rdie---rdRr~me~~Ek~LElEIk-------k~Aa~GnndAcr~LAKQLV~lRkQKt--------- 72 (208)
T KOG3231|consen 12 VIRENNRELRKTQRDIE---RDRRAMEKQEKQLELEIK-------KMAAIGNNDACRVLAKQLVHLRKQKT--------- 72 (208)
T ss_pred HHHHhHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHccCcHHHHHHHHHHHHHHHhhh---------
Confidence 34455555555544432 233344444444444443 33467888888776443333332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q 020141 182 KNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTD 261 (330)
Q Consensus 182 ~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~aeA~~eL~~~ 261 (330)
..-..-..+.-+..+-.-|.+...+--|.--.+++.+.+|..+.--....-+..|+....+ |+..-+-+ .|
T Consensus 73 --rt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmK---MemTeEMi----ND 143 (208)
T KOG3231|consen 73 --RTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMK---MEMTEEMI----ND 143 (208)
T ss_pred --hhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHH---hhhHHHHH----Hh
Confidence 1111111122221111223333333333334455555555443322222233344433333 33222222 35
Q ss_pred ChhHHHhhhcc-----CCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHH
Q 020141 262 DLEGKFALLET-----SSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELR 324 (330)
Q Consensus 262 ~Ld~k~~~le~-----~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (330)
.||+=|..-+. .-|+.+|..+--++++ +....|..+|..+++....+|+| ||..|-.||
T Consensus 144 TLDdild~sgDeeEs~aiVNqVLDEIGIEisg--Kma~~P~a~s~~~~st~kat~~D--ie~QLa~Lr 207 (208)
T KOG3231|consen 144 TLDDILDGSGDEEESQAIVNQVLDEIGIEISG--KMAKAPSARSLPSASTSKATISD--IERQLAALR 207 (208)
T ss_pred hHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcc--hhccCCccCCCCccccCCCcHHH--HHHHHHHhc
Confidence 67776665442 1278889888877755 34445644443344444455655 888888876
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.92 E-value=3 Score=40.78 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK-SYADNANALK 175 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~-~~e~~~~~le 175 (330)
.+++..+..+.+.+..++...+.+......+..-+..+......+...+...-+.-.+ .. --...+..++
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e---------~~~~D~~eL~~lr 215 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE---------IESCDQEELEALR 215 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhcCHHHHHHHH
Confidence 4455555555555555555555555555555544444444444444444332111111 11 1123444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
.++..+...+...+..+.+++.++...+.+.+.+.+
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555444443
No 34
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.91 E-value=3.8 Score=46.30 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 138 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~ 138 (330)
+...+++++....+++..+..+-+.....++.+..+++..
T Consensus 1568 V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t 1607 (1758)
T KOG0994|consen 1568 VVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEET 1607 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555554444444444444444444333
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.67 E-value=8.6 Score=44.09 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 154 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 154 (330)
..-++..+-.....+..++..+.......++.+.++..+......|..+...+++.-.+
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 681 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKE 681 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667778888888888888888888888888888888888888887665443
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.47 E-value=9.1 Score=43.92 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 98 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 138 (330)
Q Consensus 98 mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~ 138 (330)
.|.+.+..++..|..+......+-..-+....+++.+..++
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~ 644 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREI 644 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444443333333333333333333
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.38 E-value=8 Score=41.89 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHhhcc-----c-CCChhHHHhhhcc--CCHHHHHHHHHHHcCC
Q 020141 230 NTSSALSAFEKMEEKVLTMESQADSLNQL-----T-TDDLEGKFALLET--SSVDDDLANLKKELSG 288 (330)
Q Consensus 230 ~~~sa~~~feRmEeki~~~EA~aeA~~eL-----~-~~~Ld~k~~~le~--~~vd~eLa~LKa~l~~ 288 (330)
+....+.+|.-|.+|-..+|--.-|=.-+ . -.+--.+++.+.+ -.-|.|...||+++..
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888999988888544331111 0 0122334444333 1458888888987754
No 38
>PRK11637 AmiB activator; Provisional
Probab=94.36 E-value=4.6 Score=40.76 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
+..++.++...+..+..++..+..++.+|...+..+
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443333
No 39
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.26 E-value=5.2 Score=39.13 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 176 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ 176 (330)
..|+..+..|+.+...+...+..+-.-.-.+..+++.+..++..+.+..... ..-+.+..+.+ .+.+.....
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~-~~~d~~eL~~l-------k~~l~~~~~ 218 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL-EDCDPTELDRA-------KEKLKKLLQ 218 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HhCCHHHHHHH-------HHHHHHHHH
Confidence 4455555555555555555555555555555666666666666655544442 22233333333 455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHH
Q 020141 177 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 250 (330)
Q Consensus 177 qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA 250 (330)
++......+..++.++..++.+|++...++..+....+.|+... +...+++ .....++.+++..++.
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~---~~~r~~t----~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL---EQCRGFT----FKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCC----HHHHHHHHHHHHHHHH
Confidence 66666677777777777777777777777777776655554322 2223332 2345566666665553
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.16 E-value=12 Score=42.03 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcC-cHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA-QLALQKG-EEDLAREALKRRKSYADNANA 173 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA-~~AL~~G-~EdLAreAL~rk~~~e~~~~~ 173 (330)
..-+.+..++.+..|.+.+.-+-++.....++++++.....++.++..-| ..++.-+ -+||+++. ....+.++.
T Consensus 677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei----~~~~~eIe~ 752 (1074)
T KOG0250|consen 677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREI----KKKEKEIEE 752 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHH----HHHHHHHHH
Confidence 34556666666666666666666666666666666666666666665541 1111111 13444433 444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
++..+++++..++.+....++++..+...+.++.
T Consensus 753 ~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~ 786 (1074)
T KOG0250|consen 753 KEAPLEKLKEELEHIELEAQELEEYYAAGREKLQ 786 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555444444
No 41
>PRK11637 AmiB activator; Provisional
Probab=94.13 E-value=7.3 Score=39.34 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 139 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~ 139 (330)
++..|.+....|......+..+-..-..++.++.+++.++.
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444433
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.06 E-value=5.9 Score=40.91 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHhh
Q 020141 235 LSAFEKMEEKVLTMESQADSLN 256 (330)
Q Consensus 235 ~~~feRmEeki~~~EA~aeA~~ 256 (330)
...+..+++.+...+.+.+.+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~ 319 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLD 319 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766665443
No 43
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.05 E-value=2.6 Score=44.31 Aligned_cols=181 Identities=18% Similarity=0.242 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 117 TAQVLASQKRLENKCKAAE-QASEDWYRKA---QLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT 192 (330)
Q Consensus 117 lA~~~A~~k~le~k~~~~~-~~~~~~e~rA---~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l 192 (330)
..+....-.....+|.++. ....+.+... ..+....+---|+..+. .++..++..+..+..+...+
T Consensus 55 ~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~----------~~~~~l~~~e~~i~~i~~~l 124 (560)
T PF06160_consen 55 TGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIK----------EIEEQLDEIEEDIKEILDEL 124 (560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666776666 4444444444 45566666655555533 33333333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHhhccc--CCChhHH----
Q 020141 193 RLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLT--TDDLEGK---- 266 (330)
Q Consensus 193 ~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~aeA~~eL~--~~~Ld~k---- 266 (330)
..|...=+.-+.....++-+.+..+-. +.....++ ..+++.+++++...+....-+.++. ||-++++
T Consensus 125 ~~L~~~e~~nr~~i~~l~~~y~~lrk~--ll~~~~~~-----G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~ 197 (560)
T PF06160_consen 125 DELLESEEKNREEIEELKEKYRELRKE--LLAHSFSY-----GPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILE 197 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhh-----chhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444433333344444444443333222 21112222 2366677777777777766666653 3333221
Q ss_pred -----Hhhhc-------c------CCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHhhh
Q 020141 267 -----FALLE-------T------SSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAK 328 (330)
Q Consensus 267 -----~~~le-------~------~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (330)
+..++ + ..+-+.|+.|+..... =...+|.|.+-+|+.+|++++.+++
T Consensus 198 ~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~---------------m~~~gy~l~~~~i~~~i~~i~~~l~ 262 (560)
T PF06160_consen 198 KLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYRE---------------MEEEGYYLEHLDIEEEIEQIEEQLE 262 (560)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH---------------HHHCCCCCCCCCHHHHHHHHHHHHH
Confidence 11111 0 1233344444432211 1234588999999999999998876
Q ss_pred c
Q 020141 329 D 329 (330)
Q Consensus 329 ~ 329 (330)
+
T Consensus 263 ~ 263 (560)
T PF06160_consen 263 E 263 (560)
T ss_pred H
Confidence 4
No 44
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.86 E-value=10 Score=39.98 Aligned_cols=36 Identities=6% Similarity=0.249 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHH
Q 020141 231 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKF 267 (330)
Q Consensus 231 ~~sa~~~feRmEeki~~~EA~aeA~~eL~~~~Ld~k~ 267 (330)
+.+-...|....++|.......+. .-++-+.++.++
T Consensus 443 p~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~ 478 (569)
T PRK04778 443 PEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLL 478 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHH
Confidence 355677888888888877776665 444333333333
No 45
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.79 E-value=8.3 Score=38.84 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccc
Q 020141 235 LSAFEKMEEKVLTMESQADSLNQLT 259 (330)
Q Consensus 235 ~~~feRmEeki~~~EA~aeA~~eL~ 259 (330)
....+++|..|.++|+...++.+|.
T Consensus 265 Et~q~~leqeva~le~yyQ~y~~lr 289 (499)
T COG4372 265 ETAQARLEQEVAQLEAYYQAYVRLR 289 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777664
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.61 E-value=17 Score=41.67 Aligned_cols=13 Identities=15% Similarity=0.590 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHc
Q 020141 274 SVDDDLANLKKEL 286 (330)
Q Consensus 274 ~vd~eLa~LKa~l 286 (330)
.+..++..|+.++
T Consensus 946 ~~~~~i~~le~~i 958 (1163)
T COG1196 946 ELEREIERLEEEI 958 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 3567777777763
No 47
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=6.2 Score=36.43 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 123 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 193 (330)
Q Consensus 123 ~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~ 193 (330)
+..++.+++-.++..-.+-+.....|.++||-+-++-.+.+..+....+..+-..-+++....-.|.+++.
T Consensus 26 e~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla 96 (227)
T KOG3229|consen 26 EGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLA 96 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHH
Confidence 44556667777777777777788888899998888877776666666665555554444444444444443
No 48
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.40 E-value=6.7 Score=36.52 Aligned_cols=110 Identities=18% Similarity=0.259 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
.+.-+......|..+....-..-...+.++.+.......+..++.+...|-.. |..+-.+.......+..++..+
T Consensus 55 ~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~-----~ee~e~k~~E~~rkl~~~E~~L 129 (237)
T PF00261_consen 55 AEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRR-----AEEAERKYEEVERKLKVLEQEL 129 (237)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----HHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556666566666667777777777777777776666443 3334444445555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 179 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 213 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 213 (330)
+.....++.+...+..|+..|..+...+..|-+..
T Consensus 130 e~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 130 ERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 66666666666666666666665555555554443
No 49
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.17 E-value=18 Score=43.43 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDPEK----------ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDPe~----------mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e 142 (330)
...+-.+-....+.++-+.++|++. -++..|.++++.+...+..++.+....+.++..+.++...+...+
T Consensus 926 ~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~e 1005 (1930)
T KOG0161|consen 926 ELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEE 1005 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444432 244455555666666666666666666666666666666666555
Q ss_pred HHHHHH
Q 020141 143 RKAQLA 148 (330)
Q Consensus 143 ~rA~~A 148 (330)
+++..+
T Consensus 1006 ek~~~l 1011 (1930)
T KOG0161|consen 1006 EKAKSL 1011 (1930)
T ss_pred HHHHHH
Confidence 555543
No 50
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=6.2 Score=35.50 Aligned_cols=117 Identities=24% Similarity=0.297 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 115 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRL 194 (330)
Q Consensus 115 ~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~ 194 (330)
..+=.+.-..|+|+++-..++++-.--..++..|+++|+.|.||--++--..-.++ .+ +
T Consensus 9 ~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne-------------~~-----n--- 67 (203)
T KOG3232|consen 9 NHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNE-------------AV-----N--- 67 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-------------HH-----H---
Confidence 34444555667888888888887777778899999999999998764322211111 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCCcHHHHHHHHHHHHHhHHHHHHHhh
Q 020141 195 LESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV-----------NTSSALSAFEKMEEKVLTMESQADSLN 256 (330)
Q Consensus 195 Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~-----------~~~sa~~~feRmEeki~~~EA~aeA~~ 256 (330)
+=.+-.+.+.+.+|.+.|-+..++...++|+ |..-....+|++|...+.++-..+.++
T Consensus 68 ----~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me 136 (203)
T KOG3232|consen 68 ----YLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVME 136 (203)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 1224456677778888887777777766654 222223445555666666665555444
No 51
>PTZ00464 SNF-7-like protein; Provisional
Probab=93.16 E-value=0.99 Score=41.71 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=15.9
Q ss_pred CCCChhhHHHHHHHHHHhh
Q 020141 309 FPFRDAEIEKELNELRQRA 327 (330)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~ 327 (330)
.++++.||+.||++|-...
T Consensus 155 ~~~DEdELe~ELe~Le~e~ 173 (211)
T PTZ00464 155 DDIDEDEMLGELDALDFDM 173 (211)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3589999999999997654
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.61 E-value=23 Score=40.49 Aligned_cols=126 Identities=13% Similarity=0.184 Sum_probs=67.9
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 020141 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC------KAAEQASEDWYRK 144 (330)
Q Consensus 71 Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~------~~~~~~~~~~e~r 144 (330)
|.+-----.-+.+.|++.+.++-|=+.||.+ -.-++..++.....+....+..+.-. .++-++++.-+..
T Consensus 1506 lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~----T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~ 1581 (1758)
T KOG0994|consen 1506 LPLTPEQIQQLTGEIQERVASLPNVDAILSR----TKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGE 1581 (1758)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccHHHHHHh----hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344557788888888886666664 44445555555554444444433322 2333444555556
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 145 AQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 208 (330)
Q Consensus 145 A~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 208 (330)
|+.|++.-+.++ ...++.+...+......+..+.....++.+|+.+++++|.+...
T Consensus 1582 a~~ai~~a~~~~--------~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1582 AQDAIQGADRDI--------RLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666665554432 23344555555555555555556666666666666666555443
No 53
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.42 E-value=15 Score=44.01 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 176 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ 176 (330)
..++...+++++.+...+..+...-.....++.++.....++..+++.... =+|..++ ....++.+++....+..
T Consensus 925 ~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~k-L~kekk~lEe~~~~l~~ 999 (1930)
T KOG0161|consen 925 AELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISK-LSKEKKELEERIRELQD 999 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555445555555555555444444333 2222322 22223334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 177 QLDQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 177 qle~~~~~v~~Lk~~l~~Le~Ki 199 (330)
.++..+..+..+.....+++..+
T Consensus 1000 ~l~~~eek~~~l~k~~~kle~~l 1022 (1930)
T KOG0161|consen 1000 DLQAEEEKAKSLNKAKAKLEQQL 1022 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333333333333
No 54
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=9.2 Score=35.08 Aligned_cols=105 Identities=21% Similarity=0.319 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 020141 156 LAREALKRRKSYADNANALKAQLD---QQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTS 232 (330)
Q Consensus 156 LAreAL~rk~~~e~~~~~le~qle---~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~ 232 (330)
-|-..|..|+.||.+...|..|-= +..=..+.| +.-..++.|-.... +.+......+
T Consensus 64 rAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~L--------------Kdtq~Tv~AmK~~~---k~mK~~ykkv--- 123 (218)
T KOG1655|consen 64 RALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESL--------------KDTQATVAAMKDTN---KEMKKQYKKV--- 123 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH--------------HHHHHHHHHHHHHH---HHHHHHHccC---
Confidence 456677888888887777766532 222222222 22222222222222 2233334454
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhhccc------CCChhHHHhhhccCCHHHHHHHHHHHcCCC
Q 020141 233 SALSAFEKMEEKVLTMESQADSLNQLT------TDDLEGKFALLETSSVDDDLANLKKELSGS 289 (330)
Q Consensus 233 sa~~~feRmEeki~~~EA~aeA~~eL~------~~~Ld~k~~~le~~~vd~eLa~LKa~l~~~ 289 (330)
.++.|+.=+++|+...+..+|+. .+.-+ +.....+++|..|-.+...+
T Consensus 124 ----nId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe-----ide~dL~aELdaL~~E~d~~ 177 (218)
T KOG1655|consen 124 ----NIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD-----IDEADLDAELDALGQELDML 177 (218)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----cCHHHHHHHHHHHHhHhhcc
Confidence 35667777777777776666542 11111 11124677777776665443
No 55
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.79 E-value=10 Score=39.82 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 110 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA--LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNN 187 (330)
Q Consensus 110 L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~A--L~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~ 187 (330)
+..++..+..+-.....++.++..+..++.++..+-..+ ...|...-.+..+.+..+++..+..++.-+..+...+..
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~ 173 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKR 173 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433 222333333334444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020141 188 LVSNTRLLESKIQEARS 204 (330)
Q Consensus 188 Lk~~l~~Le~Ki~e~k~ 204 (330)
|+.+...|...|..++.
T Consensus 174 Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 174 LKAENSRLREELARARK 190 (546)
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 44444444444444443
No 56
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=91.78 E-value=1.4 Score=38.05 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 250 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA 250 (330)
+..++.+...+...+..|...+..+..++..+..+-+.-.|+... +-.......+.. .......++.+.-+++....
T Consensus 3 i~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~l-k~~k~~~k~~~~--~~~~~~~l~~~~~~ie~a~~ 79 (171)
T PF03357_consen 3 ILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYL-KRKKRLEKQLEK--LLNQLSNLESVLLQIETAQS 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666655444433333221 111111111111 12234566667777776666
Q ss_pred HHHHhhccc-CCChhHHH-hhhccCCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHhh
Q 020141 251 QADSLNQLT-TDDLEGKF-ALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRA 327 (330)
Q Consensus 251 ~aeA~~eL~-~~~Ld~k~-~~le~~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (330)
....+..|. +...=.++ ..+.-+.|++.+..+...+.....-+++-.+. .+...+++|.||+.||++|=...
T Consensus 80 ~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~-----~~~~~~~dd~ele~eL~~l~~e~ 153 (171)
T PF03357_consen 80 NQQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDS-----MDQVDDVDDEELEEELEQLEDEI 153 (171)
T ss_dssp HHHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS---------------------TTSTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc-----ccCCCCCCHHHHHHHHHHHHHHH
Confidence 666665553 22222222 22333567777777777664433222211111 00115688999999999986543
No 57
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.56 E-value=20 Score=37.68 Aligned_cols=184 Identities=15% Similarity=0.204 Sum_probs=99.4
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCcHHHHHHHHHHH
Q 020141 90 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL-----QKGEEDLAREALKRR 164 (330)
Q Consensus 90 dk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL-----~~G~EdLAreAL~rk 164 (330)
+.+++...-|...|..+-+.+.+-..+-..+.-....+...+..+..+...+......=- ..++..-.+..-.+.
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL 357 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQL 357 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHH
Confidence 344455566667777777777776666666666777777777777666666655544321 133334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEK 244 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEek 244 (330)
..++.....+...+.........++..+..+..++.+++..+..+.......+.. -..+...++++..+
T Consensus 358 ~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~-----------E~eAr~kL~~~~~~ 426 (569)
T PRK04778 358 ESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKD-----------ELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4444444444444444444445555555555555555555544444433322111 12355667777777
Q ss_pred HHhHHHHHHHhhcccCCChhHHHhhhccCCHHHHHHHHHHHcCC
Q 020141 245 VLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSG 288 (330)
Q Consensus 245 i~~~EA~aeA~~eL~~~~Ld~k~~~le~~~vd~eLa~LKa~l~~ 288 (330)
+.......+-.+ | .++...|...= ..+.+++..|+.++..
T Consensus 427 L~~ikr~l~k~~-l--pgip~~y~~~~-~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 427 LHEIKRYLEKSN-L--PGLPEDYLEMF-FEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHcC-C--CCCcHHHHHHH-HHHHHHHHHHHHHhcc
Confidence 765555554332 2 22333332210 1478889999998865
No 58
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.55 E-value=24 Score=38.45 Aligned_cols=146 Identities=12% Similarity=0.207 Sum_probs=74.4
Q ss_pred chHHHHHHHHHHHHHH-----HhhccCCH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLARVVKSYANA-----ILSSFEDP-----EKILEQAVLEMNDDL-VKMRQATAQVLASQKRLENKCKAAEQASED 140 (330)
Q Consensus 72 sif~Rl~~lira~in~-----~ldk~EDP-----e~mLeQ~Irdme~~L-~kar~~lA~~~A~~k~le~k~~~~~~~~~~ 140 (330)
++...+..++....+- ..++...| -.+|-|++.-+.+++ .+....-..+...-+.++.++++.-.++.+
T Consensus 504 sF~~~Ik~lL~r~~~qPill~s~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~ 583 (717)
T PF10168_consen 504 SFEKHIKSLLQRSSSQPILLKSSDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQE 583 (717)
T ss_pred hHHHHHHHHhcCCCCCCeecCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567777765331 23555543 366777766666662 333333333333334444444444444444
Q ss_pred HHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 141 WYRKAQLALQKGEEDLAR---EALKRRKSYADNANALKAQLDQ----QKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 213 (330)
Q Consensus 141 ~e~rA~~AL~~G~EdLAr---eAL~rk~~~e~~~~~le~qle~----~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 213 (330)
.++. ...++...+.||. .+..+...+.+++..+-..+.. .......++..++.+..++..++...+.++.+.
T Consensus 584 l~e~-~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 584 LQEE-RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 2223444444442 2333333444444433333322 333445667777777777777777777777766
Q ss_pred HHHHH
Q 020141 214 QSAKT 218 (330)
Q Consensus 214 ~~AkA 218 (330)
+..+.
T Consensus 663 ~~Q~~ 667 (717)
T PF10168_consen 663 DYQQR 667 (717)
T ss_pred HHHHH
Confidence 55443
No 59
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.25 E-value=30 Score=39.06 Aligned_cols=106 Identities=13% Similarity=0.236 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 100 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 179 (330)
Q Consensus 100 eQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle 179 (330)
+-.|.++.+.+..+++.+..+-......++.+.+....+..++.+...+-..-+ ...=.++...++.+..|+.+++
T Consensus 336 d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~----~~~~~~~~e~e~k~~~L~~eve 411 (1074)
T KOG0250|consen 336 DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN----NELGSELEERENKLEQLKKEVE 411 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555544444322211 1122233334445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 180 QQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 180 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
.++.++..|+..+..+..++...+-++..+
T Consensus 412 k~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 412 KLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 555555555555555555544444444333
No 60
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.02 E-value=14 Score=37.91 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMND-DLVKMRQATAQVLASQKRLENK 130 (330)
Q Consensus 96 e~mLeQ~Irdme~-~L~kar~~lA~~~A~~k~le~k 130 (330)
.+..+|.+-+|++ +|...++.....+...+.++..
T Consensus 334 r~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~ 369 (493)
T KOG0804|consen 334 RKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQE 369 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Confidence 4555566666665 4444444444444433333333
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.81 E-value=10 Score=32.85 Aligned_cols=108 Identities=14% Similarity=0.194 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 173 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 173 (330)
|+..-++.-+.++++...+....+..+-..-..++.+++.+...+......+...-..+- ....+...+..
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~---------~~E~l~rriq~ 84 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS---------NAEQLNRRIQL 84 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------hHHHHHhhHHH
Confidence 344446777777777777777777766666666666666666666655555444321110 00144455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
|+.+++.....+......++....+..++.++...|-
T Consensus 85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le 121 (143)
T PF12718_consen 85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALE 121 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5555555555555555555555555555555544443
No 62
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.49 E-value=24 Score=39.25 Aligned_cols=108 Identities=16% Similarity=0.245 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020141 72 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 151 (330)
Q Consensus 72 sif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 151 (330)
+=|++|-. -...+.+.+=++-|--.--.|.+..+.+.+..-+..+..+...+.+|.++++.++..+.++.++...||
T Consensus 368 ~qfkqlEq-qN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl-- 444 (1243)
T KOG0971|consen 368 YQFKQLEQ-QNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL-- 444 (1243)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 45776642 345555566666665555566777888888999999999999999999999999999999999999987
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 152 GEEDLAREALKRRKSYADNANALKAQLDQQK 182 (330)
Q Consensus 152 G~EdLAreAL~rk~~~e~~~~~le~qle~~~ 182 (330)
|-|..-.....++-.+++.+..|+..+.+++
T Consensus 445 GAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 445 GAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred cHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 5566766666666677777766666655443
No 63
>PRK03918 chromosome segregation protein; Provisional
Probab=90.44 E-value=31 Score=37.77 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=9.7
Q ss_pred chHHHHHHHHHHHHHHHh
Q 020141 72 NLFDRLARVVKSYANAIL 89 (330)
Q Consensus 72 sif~Rl~~lira~in~~l 89 (330)
++|....-+-.|.+..++
T Consensus 124 ~~f~~~~~~~Qg~~~~~~ 141 (880)
T PRK03918 124 HVFLNAIYIRQGEIDAIL 141 (880)
T ss_pred HHhceeEEEeccchHHHh
Confidence 355444445566666665
No 64
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=11 Score=31.95 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
.+...-..+.++...+..++..+..++.++.+...-..+++. -+.....-|+ .|.+. +...-...|+...
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~------llvk~-~k~~~~~eL~er~ 79 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGN------LLVKV-SKEEAVDELEERK 79 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhh------HHhhh-hHHHHHHHHHHHH
Confidence 455666778888899999999999999999887765555543 3333444444 44444 6667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 179 DQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
+..+-.+..|+.+...++.++++++.++...
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777666543
No 65
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.03 E-value=34 Score=37.64 Aligned_cols=123 Identities=17% Similarity=0.242 Sum_probs=65.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 020141 85 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRR 164 (330)
Q Consensus 85 in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk 164 (330)
++.+|+..+.-..-|+-.|+++++.|..++..+....+....+..++............+. |-++-=|.++
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~---------d~~~~eL~rk 299 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKM---------DRLKLELSRK 299 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHH---------HHHHHHHHHH
Confidence 4445555555566677777777777777777766666666666555555544444333221 1111112222
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 K----SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 165 ~----~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 216 (330)
. .+......+..+...+...++.|+..+...+.....+....+.|..+...+
T Consensus 300 ~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k 355 (775)
T PF10174_consen 300 KSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK 355 (775)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 223333444444444556666666666666666555555555555554433
No 66
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.87 E-value=26 Score=36.12 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 020141 193 RLLESKIQEA 202 (330)
Q Consensus 193 ~~Le~Ki~e~ 202 (330)
..++.++..+
T Consensus 309 ~~l~~~l~~l 318 (562)
T PHA02562 309 KELQHSLEKL 318 (562)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 67
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.81 E-value=16 Score=37.13 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHh
Q 020141 273 SSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQR 326 (330)
Q Consensus 273 ~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (330)
+.|++.|+.++--+.....-..+- .+.-...++|.|++||.||++|-..
T Consensus 337 ekVed~Ldev~et~d~~~EV~~~l-----a~~~~~~~d~~de~lEkEL~~L~~D 385 (439)
T KOG2911|consen 337 EKVEDVLDEVNETLDRQEEVEDAL-----ASYNVNNIDFEDEDLEKELEDLEAD 385 (439)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHH-----hcCCCCCCccchHHHHHHHHHHHhc
Confidence 358888888887664432211110 1223345789999999999999543
No 68
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=89.72 E-value=3.9 Score=42.36 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 134 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~ 134 (330)
.|++++++|.+++..++.+.+....++.+++-+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555555555554443
No 69
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.61 E-value=43 Score=38.26 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 112 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 148 (330)
Q Consensus 112 kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~A 148 (330)
.++.....+-...-..+..++.+...+.+++.....+
T Consensus 388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~ 424 (1293)
T KOG0996|consen 388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKA 424 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444433
No 70
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.32 E-value=23 Score=34.74 Aligned_cols=10 Identities=10% Similarity=0.156 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 020141 276 DDDLANLKKE 285 (330)
Q Consensus 276 d~eLa~LKa~ 285 (330)
+..+..+|..
T Consensus 318 ~~~~~~i~~G 327 (423)
T TIGR01843 318 PKDIGFVHVG 327 (423)
T ss_pred hhhhhhhCCC
Confidence 4556666643
No 71
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.04 E-value=16 Score=37.43 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 146 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~ 146 (330)
.+|++.+.-......+.....+.+..+-+++++.+++.++.+|..+-.
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666777788888888899999999999988887654
No 72
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.03 E-value=11 Score=40.97 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHH-HHH---HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLARVVKSY-ANA---ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 72 sif~Rl~~lira~-in~---~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.+|.+-..+|+-. +.. +-+.++--...|...+.+--+.|.+++.....+....+.+..+|+++....+.+.+|+..
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777766644 221 222222334555555555555666666666666666666666777777776666666664
Q ss_pred HH
Q 020141 148 AL 149 (330)
Q Consensus 148 AL 149 (330)
-+
T Consensus 619 vl 620 (717)
T PF10168_consen 619 VL 620 (717)
T ss_pred HH
Confidence 43
No 73
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.97 E-value=15 Score=33.77 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020141 178 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEML 226 (330)
Q Consensus 178 le~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~ 226 (330)
+++....+..|+.+..+|..++..++.+.+.+.+.....+-...+.=.+
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~ 175 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFM 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555555555555555544444444443333
No 74
>PF13514 AAA_27: AAA domain
Probab=88.90 E-value=48 Score=37.79 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 109 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 149 (330)
Q Consensus 109 ~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL 149 (330)
....+...+..+.......+.++..++.....|...=..++
T Consensus 674 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l 714 (1111)
T PF13514_consen 674 RREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEAL 714 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666667777777888888888887766554
No 75
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.76 E-value=22 Score=38.52 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 020141 101 QAVLEMNDDLVKMRQATAQVLASQ-------KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 173 (330)
Q Consensus 101 Q~Irdme~~L~kar~~lA~~~A~~-------k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 173 (330)
..|.+++.++.+++..++.+.... ..++.++++++.++.+--.+....+. .-...+..+...++.++..
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~----~~~~~a~~~~~~L~~~l~~ 363 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLL----MQADAAQARESQLVSDVNQ 363 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 678888888888888777766644 33444444444444332222222211 1111222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTAT 220 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~ 220 (330)
++.++...- .....+..|+...+-.+.-.+.|..|.+.++.+.
T Consensus 364 ~~~~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 364 LKAASAQAG----EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHhCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333332221 2245556666677777777777777766665554
No 76
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.60 E-value=26 Score=34.39 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=5.3
Q ss_pred ccceeeEEecc
Q 020141 43 NGGVTRLRIAP 53 (330)
Q Consensus 43 ~~~~~~~~~~~ 53 (330)
+|.|.-+.|..
T Consensus 51 ~G~v~~i~V~e 61 (423)
T TIGR01843 51 GGIVREILVRE 61 (423)
T ss_pred CcEEEEEEeCC
Confidence 34455555544
No 77
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.58 E-value=54 Score=38.06 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
.+..+++..+..+..+...+..++.+|......+..+.
T Consensus 981 ~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~ 1018 (1311)
T TIGR00606 981 TVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQ 1018 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.51 E-value=23 Score=33.75 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q 020141 80 VVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 155 (330)
Q Consensus 80 lira~in~~ldk~EDP----e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~Ed 155 (330)
.+.+.|+.+-.+.-.+ ..+++..|++++..|..+...-+.+......+...++++..+....
T Consensus 29 ~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-------------- 94 (312)
T PF00038_consen 29 RLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-------------- 94 (312)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH--------------
Confidence 3455555555553221 3556666666666666555555555555554444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 156 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 156 LAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
......++..+..+...++........|...+..|+..|.-+
T Consensus 95 -----~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 95 -----LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 444555566666666666655555555555555555444433
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.40 E-value=23 Score=33.48 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=60.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 020141 84 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR 163 (330)
Q Consensus 84 ~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r 163 (330)
.+..-+++++--..=..-++..++..+..++..+...--....++.++.+++..+.+..++-..+ ++.+ .
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~----e~kl------~ 83 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA----EEKL------S 83 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH------h
Confidence 44444444442223344455566666666776666666666666666666666666655543332 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 164 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 164 k~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
...-+..+..|...++.++.....|...+..+..++.....++..++-
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233444555555555555555555555555555555555554443
No 80
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.88 E-value=15 Score=35.29 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 155 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 155 dLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
-|--.||.++++++.++..|+.+-.+-.=+++.|+..+.+-+.|.++-+.+...|+
T Consensus 11 GL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~Lk 66 (307)
T PF10481_consen 11 GLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALK 66 (307)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45567999999999999999999999899999999999998888888887777666
No 81
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.86 E-value=46 Score=37.43 Aligned_cols=143 Identities=17% Similarity=0.267 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 104 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR--EALKRRKSYADNANALKAQLDQQ 181 (330)
Q Consensus 104 rdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr--eAL~rk~~~e~~~~~le~qle~~ 181 (330)
.|.+.........+..-...-.++++.++.+...++.+.++-.. ++.-++=. .=...-..+......+....+.+
T Consensus 184 ~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~---~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~ 260 (1072)
T KOG0979|consen 184 MDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERK---KSKIELLEKKKKWVEYKKHDREYNAYKQAKDRA 260 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccchHhhhHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555444321 11111111 11223345667777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHH
Q 020141 182 KNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQAD 253 (330)
Q Consensus 182 ~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~ae 253 (330)
+..+..+......++.+++++++++..+-.+.... +.-+++..... -...+-|++++.++.......+
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~--~~~~~e~~~k~--~~~~ek~~~~~~~v~~~~~~le 328 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKETRSKISQK--QRELNEALAKV--QEKFEKLKEIEDEVEEKKNKLE 328 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888766665554332 22222222211 1223455555555554444333
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.74 E-value=46 Score=36.21 Aligned_cols=54 Identities=9% Similarity=0.278 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 020141 91 SFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQK-------RLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 91 k~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k-------~le~k~~~~~~~~~~~e~r 144 (330)
...+.++.+...|..++.+...++.-+..+...+. .+|+++.+.+..-...|.+
T Consensus 450 ~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQ 510 (697)
T PF09726_consen 450 SLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQ 510 (697)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666777777777776666666665555544 3444444444444444433
No 83
>PF13166 AAA_13: AAA domain
Probab=87.73 E-value=38 Score=36.10 Aligned_cols=62 Identities=13% Similarity=0.297 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ-SAKTATKVSEMLGNV 229 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~-~AkAq~~~~~~~~~~ 229 (330)
...+..+...+......+..+...+..++..+...+.+...|.+... ...+...+|..+..+
T Consensus 409 ~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 409 KEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555555555555555555543 444555555555443
No 84
>PRK12704 phosphodiesterase; Provisional
Probab=87.47 E-value=40 Score=35.28 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 95 PEKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYR 143 (330)
Q Consensus 95 Pe~mLeQ~Irdme~~L~kar~~l-A~~~A~~k~le~k~~~~~~~~~~~e~ 143 (330)
-..++++...+++....+++... ..+...+..+++++.+.+.++.+.++
T Consensus 40 Ae~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~ 89 (520)
T PRK12704 40 AKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK 89 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655555543 33333344444444444444444444
No 85
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.42 E-value=26 Score=33.01 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH---HHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL---KRRKSYADNANA 173 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL---~rk~~~e~~~~~ 173 (330)
.-|..-+..++++..+++..+.........|+.+...++.....++.++..|.... ..|...+. ..+..++..+..
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~-~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEK-QRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788899999999999999988888999999998888888888876653332 22333222 122233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARS 204 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~ 204 (330)
++..+..+...+..-......++.++..++.
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 86
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=86.72 E-value=15 Score=29.64 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020141 73 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 152 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 152 (330)
+|..+..+|.+.+......+ .+|+..=+-.-..+.++...++.+...-..+..++..+
T Consensus 4 ~f~~~~~~v~~el~~t~~d~----~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l------------------ 61 (99)
T PF10046_consen 4 MFSKVSKYVESELEATNEDY----NLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL------------------ 61 (99)
T ss_pred HHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 57777777777766654442 34554444444444444444444444444443333332
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 153 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 201 (330)
Q Consensus 153 ~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e 201 (330)
..+-+++..++.++..++..+..|.....+||.|+..
T Consensus 62 ------------~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 62 ------------QPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345566777777788888888888888888888764
No 87
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.57 E-value=10 Score=39.15 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 154 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 154 (330)
.||.+-.++.++|..+..++.+-+.+..+-++++++......+...||...+.
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~ 112 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQ 112 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhH
Confidence 45566777788888888888899999999999999999999999999887553
No 88
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.16 E-value=17 Score=36.05 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 111 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 190 (330)
Q Consensus 111 ~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~ 190 (330)
..+...++...-+..+++-+++++..++.+-++.+.. |-|++.+.......-.+.|+..+.++..-+++=..
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~--------LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~ 201 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQT--------LNRELAEALAYQQELNDEYQATFVEQHSMLDKRQA 201 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHH--------HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence 3333444444444445555555555555555554443 44555555555566677788888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020141 191 NTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 191 ~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
.|.+|++|++++--+...|..-
T Consensus 202 yI~~LEsKVqDLm~EirnLLQl 223 (401)
T PF06785_consen 202 YIGKLESKVQDLMYEIRNLLQL 223 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987777666543
No 89
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.92 E-value=44 Score=34.14 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Q 020141 160 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR---------------LLESKIQEARSKKDTLKA 211 (330)
Q Consensus 160 AL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~---------------~Le~Ki~e~k~k~~~LkA 211 (330)
...+...+..++...+.++...+...+.++..+. .+..+|.+++.++..+..
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~ 268 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRL 268 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHH
Confidence 4456666666777777777766666666665433 445556666655555543
No 90
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=85.87 E-value=34 Score=34.24 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 192 TRLLESKIQEARSKKDTLKARAQSAK 217 (330)
Q Consensus 192 l~~Le~Ki~e~k~k~~~LkAr~~~Ak 217 (330)
+..|+..++-.+...+.|..|.+.++
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.66 E-value=23 Score=30.66 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=44.4
Q ss_pred HHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 81 VKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 81 ira~in~~ldk~ED---Pe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
++.-...+.++++. -.+-+++...+.+..|..+..-+..+-..-..++.++..+......-+.....
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~ 74 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN 74 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 44444555555443 35777777777777777777777777777777777777777777666655443
No 92
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.55 E-value=41 Score=33.56 Aligned_cols=134 Identities=11% Similarity=0.169 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 111 VKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 190 (330)
Q Consensus 111 ~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~ 190 (330)
...|..+.+.....+.++..+........+........|.+ .-.|-+.+-++++.+-.+|.........++.
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lek--------I~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEK--------IESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666655555554443 3334444445555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH----HHHHHHHHHHHHhHHHHHHH
Q 020141 191 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA----LSAFEKMEEKVLTMESQADS 254 (330)
Q Consensus 191 ~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa----~~~feRmEeki~~~EA~aeA 254 (330)
.+..+..-+.++...+..+....... +..|.+...++..+++ ..++.+|+..|.+|+-+.-.
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe~v--K~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELEQV--KQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 55555555555555555444433332 3345555555554443 46778888888877766543
No 93
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=85.50 E-value=20 Score=29.86 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 182 (330)
Q Consensus 103 Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~ 182 (330)
+.=-+.....++..++.+.+.....+.++..+......+......-...|-. ......+..-+..+...+..+.
T Consensus 8 l~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~------~~~l~~~~~f~~~l~~~i~~q~ 81 (141)
T TIGR02473 8 LDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTS------ALELSNYQRFIRQLDQRIQQQQ 81 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566778888999999999999999999999999988877665566622 1122345555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 183 NVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 183 ~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
..+..++..+......+.++..+..
T Consensus 82 ~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 82 QELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665555555544433
No 94
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=85.13 E-value=68 Score=35.68 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 181 QKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 181 ~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
.+.+.++++..+..|...-.++.+|.+...-+
T Consensus 422 ~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ 453 (980)
T KOG0980|consen 422 AENRYEKLKEKYTELRQEHADLLRKYDDIQKQ 453 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444443333
No 95
>PRK03918 chromosome segregation protein; Provisional
Probab=85.10 E-value=64 Score=35.32 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki 199 (330)
+...+..+...+......+..++..+..++.++
T Consensus 671 l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~ 703 (880)
T PRK03918 671 LSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443333
No 96
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.95 E-value=67 Score=35.43 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
++..|....+..+-.++.....|...++.+.-|+..|-.+
T Consensus 420 em~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~k 459 (1118)
T KOG1029|consen 420 EMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGK 459 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333344444444444444444444444444444433
No 97
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.58 E-value=21 Score=38.66 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 159 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 159 eAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
.||+++..+..+...+++++++....-+++..++..|...+..++
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 466777777777777777777766666666666666666666555
No 98
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=84.57 E-value=28 Score=30.81 Aligned_cols=116 Identities=17% Similarity=0.248 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020141 73 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 152 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 152 (330)
|++.+-..|..+-..+++=.|. ..+.+..+..+|.+++..+..++..-..++.+...+......... -...-
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~----~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~----~f~~y 74 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQ----ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR----NFDRY 74 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccc
Confidence 3444444444443333333333 566677888888888888888888888888877776666544332 23444
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 153 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLE 196 (330)
Q Consensus 153 ~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le 196 (330)
.|+--++|-..-..+.-.+..+...-.++...-+.|+..+..++
T Consensus 75 sE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 75 SEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667555555555544444444444444444444444333
No 99
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.38 E-value=57 Score=34.14 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQAT-AQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~l-A~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
..++++...++++...+++... ..+...+..+++++++.+.++.+++++
T Consensus 35 e~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~r 84 (514)
T TIGR03319 35 KRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERR 84 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555555443 333333334444444444444444443
No 100
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=83.94 E-value=4.7 Score=29.93 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 132 KAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 132 ~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
+.++....+|..-|..|.+.||.+-||..+.--+.+++.+...+
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677888999999999999999999999998888888776654
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.92 E-value=34 Score=31.23 Aligned_cols=127 Identities=22% Similarity=0.302 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 020141 74 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 153 (330)
Q Consensus 74 f~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 153 (330)
-.+-+.=++.+-|++...-=+=++-|...|.+|+......+..+..+...-+++..-+..++.++..+......- .+.
T Consensus 7 He~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y-~kd- 84 (201)
T PF13851_consen 7 HEKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY-EKD- 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHH-
Confidence 344455566666777665555678899999999999999999999999999999999999999999988776652 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 154 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 154 EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 216 (330)
...+..++..+...+..+..|+-....|+.++..+...++.|..+-..+
T Consensus 85 --------------K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 85 --------------KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344445555555555666666666666666666666666654443
No 102
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.83 E-value=25 Score=29.66 Aligned_cols=42 Identities=12% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 100 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 141 (330)
Q Consensus 100 eQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~ 141 (330)
--.||..+.++..++..++++.+.+..+..++-.+-...+.+
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888877777777777766666555
No 103
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=83.66 E-value=26 Score=29.75 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 184 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~ 184 (330)
=.+.....+...++.+.......+.++..+......|..+.......|=. ......+..-+..|...+..+...
T Consensus 13 l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~------~~~l~~~~~fi~~L~~~I~~q~~~ 86 (147)
T PRK05689 13 LAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMT------SSWWINYQQFLQQLEKAITQQRQQ 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778888888888888999999988888888877665555532 224455666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
+..++..+......+.+...++.
T Consensus 87 v~~~~~~ve~~r~~~~~a~~~~k 109 (147)
T PRK05689 87 LTQWTQKVDNARKYWQEKKQRLE 109 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666665555544443
No 104
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.66 E-value=66 Score=34.35 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 126 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 126 ~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
.+..++..++.++....++...+- .++-......+...++..+..++..+......+..++..+..++.++.....+
T Consensus 395 ~~~~~~~~~e~el~~l~~~l~~~~---~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 395 QLLKELRELEEELAEVDKKISTIP---SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433221 22233455566666777777777777777777777777777777666655444
Q ss_pred HHH
Q 020141 206 KDT 208 (330)
Q Consensus 206 ~~~ 208 (330)
...
T Consensus 472 ~~~ 474 (650)
T TIGR03185 472 KIN 474 (650)
T ss_pred HHh
Confidence 433
No 105
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.62 E-value=85 Score=35.55 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhHHH
Q 020141 234 ALSAFEKMEEKVLTMES 250 (330)
Q Consensus 234 a~~~feRmEeki~~~EA 250 (330)
+...+.++.+++..++-
T Consensus 963 are~l~~Lq~k~~~l~k 979 (1174)
T KOG0933|consen 963 AREELKKLQEKKEKLEK 979 (1174)
T ss_pred HHHHHHHhhHHHHHHHh
Confidence 44455555555554443
No 106
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.53 E-value=21 Score=32.08 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 213 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 213 (330)
+...++..+......++.+......|.-.+..++.++..++.+-..|+-|.
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666666666666666667777777777777777663
No 107
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=83.49 E-value=27 Score=29.74 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 106 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 185 (330)
Q Consensus 106 me~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v 185 (330)
.+.....+...++.+.......+.++..+.....+|..+...-...|-. +.....+..-+..|...+.++...+
T Consensus 14 ~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~------~~~l~~~~~fl~~L~~~i~~q~~~v 87 (146)
T PRK07720 14 KENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLS------IQEIRHYQQFVTNLERTIDHYQLLV 87 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778888888888888899999999999998888776666642 3334566777777777887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020141 186 NNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 186 ~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
..++..+..-...+.+...++.
T Consensus 88 ~~~~~~ve~~r~~~~ea~~~~k 109 (146)
T PRK07720 88 MQAREQMNRKQQDLTEKNIEVK 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666665555555444
No 108
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.20 E-value=71 Score=33.66 Aligned_cols=153 Identities=14% Similarity=0.233 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA----------------------------SEDWYRKAQLA 148 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~----------------------------~~~~e~rA~~A 148 (330)
.-+++.|.++++++......+..+......-...+.++... ++..-......
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544444444333333 33333444456
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 020141 149 LQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVN----NLVSNTRLLESKIQEARSKKD---TLKARAQSAKTATK 221 (330)
Q Consensus 149 L~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~----~Lk~~l~~Le~Ki~e~k~k~~---~LkAr~~~AkAq~~ 221 (330)
...||-.-|++.|..... ....++..++..=..+. .+-.++.+|+.-+.+|..+-= .+.--.+......+
T Consensus 184 t~~GD~~~A~eil~~l~~---~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~ 260 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKE---ETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQ 260 (560)
T ss_pred HHCCCHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 677888888777665443 23333333333222222 233444444444444443311 11111222222333
Q ss_pred HH---HHhcCCCCCcHHHHHHHHHHHHHhHHHHH
Q 020141 222 VS---EMLGNVNTSSALSAFEKMEEKVLTMESQA 252 (330)
Q Consensus 222 ~~---~~~~~~~~~sa~~~feRmEeki~~~EA~a 252 (330)
+. ..+..++.+.+...++.|.++|+.+....
T Consensus 261 l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~l 294 (560)
T PF06160_consen 261 LEEALALLKNLELDEVEEENEEIEERIDQLYDIL 294 (560)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 23345566778888888888887665443
No 109
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.13 E-value=70 Score=33.55 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 155 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~Ed 155 (330)
+.+.++.....+.++++.+.+.....+..+++++.++.++++.+.- .++.|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~---~l~~~E~e 212 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA---DLQPGEDE 212 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC---CcCCCcHH
Confidence 4455556666666666666666666666666666666666665542 23455543
No 110
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=82.06 E-value=89 Score=34.68 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020141 196 ESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 196 e~Ki~e~k~k~~~LkAr~~~A 216 (330)
++.++++..+.+.+.+-.-.|
T Consensus 416 kneL~~a~ekld~mgthl~ma 436 (1265)
T KOG0976|consen 416 KNELQEALEKLDLMGTHLSMA 436 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 444556666666555544443
No 111
>PRK09343 prefoldin subunit beta; Provisional
Probab=81.67 E-value=30 Score=28.99 Aligned_cols=105 Identities=14% Similarity=0.200 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
|-..|...-..+...++.+..+......++.++.+...-..+++. -+..=..-| -.+.+. +..+-...++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG------~vlv~q-d~~e~~~~l~ 77 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVG------NLLVKV-DKTKVEKELK 77 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhh------HHHhhc-cHHHHHHHHH
Confidence 344555566667777777888888888888888776655554443 122111122 222222 3334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
..++.....+..|..+...++.++.+++.++..+.
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555554443
No 112
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.53 E-value=20 Score=28.14 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=54.8
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020141 90 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 151 (330)
Q Consensus 90 dk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 151 (330)
..+.|.+.+|...|.++++.=..+.+.+..+...+..+.++..++..+...|+++...-|.+
T Consensus 14 qqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446788999999999999999999999999999999999999999999999998876544
No 113
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.95 E-value=51 Score=31.16 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
+.-.+..+.+.+......+..+-.+..+++..+..+++++.+.+.+- .+... +.-.+..-.+...+.++...+..++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~--~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKD--ERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777777777777777777777777777666655 22222 2222333344555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 179 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
......+..+...+..+..++..++.....+.++
T Consensus 113 ~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 113 AELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666655555443
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=80.72 E-value=69 Score=32.53 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
....++.+...+..+-.++...+.+|+....+|..+-+....+-..|..|
T Consensus 159 qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r 208 (499)
T COG4372 159 QRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR 208 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555544444444443344333
No 115
>PRK00846 hypothetical protein; Provisional
Probab=80.64 E-value=17 Score=28.45 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAK 217 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~Ak 217 (330)
+-...++.+..|+..+.-++..++.|..-+......|..++.+...|+-|.....
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345677888888888888888888888888888888888888888877766553
No 116
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=80.45 E-value=67 Score=32.20 Aligned_cols=129 Identities=17% Similarity=0.216 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 020141 73 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA---- 148 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~A---- 148 (330)
|-.-+..++.-..+++-....--...|.+-|.++++...++.-.+..++.+-..+++.+..++..+.+-+.-...|
T Consensus 223 LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL 302 (384)
T PF03148_consen 223 LREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRL 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444444554444444467777788888888888888888877777777888877777777766655444
Q ss_pred -HhcCc------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 149 -LQKGE------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 201 (330)
Q Consensus 149 -L~~G~------EdLAreAL-~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e 201 (330)
....+ -|-|-..| .+...+.+.+..|+..+...+.....|......|+..|.-
T Consensus 303 ~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 303 ENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred hhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 14444444 5667777777777777777777777777777777665543
No 117
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.19 E-value=30 Score=33.16 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 020141 205 KKDTLKARAQSAKT 218 (330)
Q Consensus 205 k~~~LkAr~~~AkA 218 (330)
+.+.|+.|.++...
T Consensus 99 r~~~l~~raRAmq~ 112 (265)
T COG3883 99 RQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666543
No 118
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=80.06 E-value=21 Score=33.84 Aligned_cols=82 Identities=10% Similarity=0.191 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q 020141 95 PEKILEQAVLEMNDDLVKMRQATAQVLAS-----QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAD 169 (330)
Q Consensus 95 Pe~mLeQ~Irdme~~L~kar~~lA~~~A~-----~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~ 169 (330)
-...|..+|+|++..|.+++..+...... ......++..+..+|...-.+|..+=..|+-|-|...+.....+..
T Consensus 84 ~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ 163 (254)
T PF03194_consen 84 FLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKE 163 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35789999999999999998887763322 1112678999999999999999999999999888877654444444
Q ss_pred HHHHHHH
Q 020141 170 NANALKA 176 (330)
Q Consensus 170 ~~~~le~ 176 (330)
....++.
T Consensus 164 ek~~le~ 170 (254)
T PF03194_consen 164 EKEELEK 170 (254)
T ss_pred HHHHHHh
Confidence 4433333
No 119
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.00 E-value=84 Score=33.10 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=36.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhHHHHHHHhhcc---cCCChhHHHhhhc---------c-----CCHHHHHHHHHHHcCC
Q 020141 228 NVNTSSALSAFEKMEEKVLTMESQADSLNQL---TTDDLEGKFALLE---------T-----SSVDDDLANLKKELSG 288 (330)
Q Consensus 228 ~~~~~sa~~~feRmEeki~~~EA~aeA~~eL---~~~~Ld~k~~~le---------~-----~~vd~eLa~LKa~l~~ 288 (330)
+.|.-.|..-++..++.....++-.+-+=.| ...++-++|..|. + -.+|.+|.+|+.++..
T Consensus 189 ~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~ 266 (570)
T COG4477 189 SGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVE 266 (570)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHH
Confidence 4455567777888887777777666543222 0223444444332 1 2689999999988754
No 120
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.96 E-value=98 Score=33.84 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=62.1
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 020141 89 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 168 (330)
Q Consensus 89 ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e 168 (330)
+-.+|.--..|-..+++.+.++..++..+......-.+|..+++.+......-+.....--.+++. ... ....|+
T Consensus 274 L~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~--s~~---d~~~ye 348 (717)
T PF09730_consen 274 LLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERD--SHE---DGDYYE 348 (717)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccc--ccc---ccchhh
Confidence 334555556666677777777777777777666666666666666555322222222111111110 000 011122
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 169 DN---ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 169 ~~---~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
-. ...|+..|......+..|+..|..|+.++...+.+...-+.
T Consensus 349 ~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~ 394 (717)
T PF09730_consen 349 VDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKD 394 (717)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23455666666667777777777776666666665544444
No 121
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.67 E-value=1e+02 Score=33.78 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=78.6
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 020141 88 ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSY 167 (330)
Q Consensus 88 ~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~ 167 (330)
++..-.+-+.-+.+-|.+++.++..+|..+..+.++..++.....++....+.++..-..- ++++ |++=.|-..+
T Consensus 21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l----r~e~-ke~K~rE~rl 95 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRL----REEI-KEYKFREARL 95 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHH
Confidence 4444455678889999999999999999999999999999999999988888777654432 2222 4444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRL---LESKIQEARSKKDTLKAR 212 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~---Le~Ki~e~k~k~~~LkAr 212 (330)
-.....|+.+--.++.+|..|+.+-.+ +++.|..+.-..+.|...
T Consensus 96 l~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~q 143 (717)
T PF09730_consen 96 LQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQ 143 (717)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666655566666555544332 233444444444444433
No 122
>PRK11281 hypothetical protein; Provisional
Probab=79.65 E-value=1.2e+02 Score=34.81 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=71.5
Q ss_pred HHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH--
Q 020141 81 VKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED-- 155 (330)
Q Consensus 81 ira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~Ed-- 155 (330)
+++.++.+ .+-++| .+.+-|.+++.-+-+.+......+.-+.++ ++.++.+++.+-..+.. ++++-.+.
T Consensus 41 iq~~l~~~-~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k----~l~~Ap~~l~~a~~~Le-~Lk~~~~~~~ 114 (1113)
T PRK11281 41 VQAQLDAL-NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQ----QLAQAPAKLRQAQAELE-ALKDDNDEET 114 (1113)
T ss_pred HHHHHHHh-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHH-Hhhccccccc
Confidence 33444443 223444 355666777777777776666655444433 33333333333333322 23332111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 156 ---LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 156 ---LAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 218 (330)
+....+ .+++..+.+++.++++.+.....+..++..+..+.+.++........|.+..+.
T Consensus 115 ~~~~~~~Sl---~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 115 RETLSTLSL---RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred cccccccCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 222222 336777777777777777777777777777777777777776666666555544
No 123
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=79.29 E-value=78 Score=32.30 Aligned_cols=26 Identities=4% Similarity=-0.064 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLA 122 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A 122 (330)
.-+++.+.+++.++..++..+..+..
T Consensus 207 ~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 207 SEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777766666555443
No 124
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=79.22 E-value=50 Score=30.02 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=19.7
Q ss_pred cCCCcccccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Q 020141 62 QGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAV 103 (330)
Q Consensus 62 ~~~~~~~~~Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~I 103 (330)
+-|-++|. |-.|.=+..-|+.- ++.||...++-.+
T Consensus 41 REg~A~Gl-m~~f~~l~e~v~~l------~idd~~~~f~~~~ 75 (190)
T PF05266_consen 41 REGMAVGL-MVTFANLAEKVKKL------QIDDSRSSFESLM 75 (190)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHc------ccCCcHHHHHHHH
Confidence 44666665 44555555555443 6678866666433
No 125
>PLN02718 Probable galacturonosyltransferase
Probab=79.21 E-value=10 Score=40.16 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 173 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 173 (330)
+|..+-|-.|+.|+++|..||.-+ .+|..+.-.+-..++...+.+.+.-.-.| ..+.||=..+..+....+..+..
T Consensus 158 ~~~~~~d~~v~~~~dql~~ak~y~--~~a~~~~~~~~~~el~~~i~e~~~~l~~~--~~d~~lp~~~~~~~~~m~~~~~~ 233 (603)
T PLN02718 158 QPRRATDEKVKEIRDKIIQAKAYL--NLAPPGSNSQLVKELRLRTKELERAVGDA--TKDKDLSKSALQRMKSMEVTLYK 233 (603)
T ss_pred CcccCcHHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhcc--cCCCCCCHhHHHHHHHHHHHHHH
Confidence 567888999999999999999987 67777766777778888888887776666 55566999998888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
-+.........+.+|+.-+..+|.++...+.+-
T Consensus 234 a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~ 266 (603)
T PLN02718 234 ASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQA 266 (603)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888888888887776665443
No 126
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=78.95 E-value=88 Score=32.70 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 175 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 175 e~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 216 (330)
+..+......++..+..+..++.+|..+....+..++-...|
T Consensus 392 ~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~A 433 (522)
T PF05701_consen 392 KEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALA 433 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444443
No 127
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.89 E-value=73 Score=35.08 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
++..|.++++...++++....+......+++...+++.+.++++++-..
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 566 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK 566 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433333
No 128
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=78.74 E-value=52 Score=29.95 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
...|++.|+|.+..+.+...+|...-.+-.-...-..+...++..+..-...
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~ 120 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKA 120 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777666666666666666655555444333
No 129
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=78.19 E-value=71 Score=31.22 Aligned_cols=104 Identities=9% Similarity=0.124 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 106 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 185 (330)
Q Consensus 106 me~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v 185 (330)
+...+.+++.++......-..++++++.++..+..+...... -..+...-....+....++.+....+..+|...+..+
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~-~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l 150 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE-KGITENGYIINHLMSQADATRKLAEATRELAVAQERL 150 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555666666666554432111 1111111222333445566666667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 186 NNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 186 ~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
.++..........+.....++-.+.
T Consensus 151 ~q~~~k~~~~q~~l~~~~~~~~~~i 175 (301)
T PF06120_consen 151 EQMQSKASETQATLNDLTEQRIDLI 175 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766666544
No 130
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.97 E-value=72 Score=31.15 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 216 (330)
++.+.........++-.....+...+.++..+++.+.++...+
T Consensus 83 le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 83 LEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444455555555555444443
No 131
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.27 E-value=98 Score=32.34 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 169 DNANALKAQLDQQKNVVNNLVSNT---RLLESKIQEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 169 ~~~~~le~qle~~~~~v~~Lk~~l---~~Le~Ki~e~k~k~~~LkAr~~~AkA 218 (330)
.....++..+.+....+..|+..+ ..|+.++.........|+........
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777777777777776 56677888887777777776655554
No 132
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=77.13 E-value=18 Score=27.28 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 216 (330)
.++.+..|+..+.-+...++.|..-+.....+|..++.+...|..+....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666666666666666666554443
No 133
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.06 E-value=10 Score=39.18 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
+..+.+|+++++.++...+.+......++.+|++++.....|+.+...
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667777776666767777777777888887777777777643
No 134
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.03 E-value=59 Score=29.65 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 76 RLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 76 Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
|+-.-+...-..+|+++||++.-|-|.|.-+.+++.-++..+-........+++++.+...++.+..+....
T Consensus 36 k~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 36 KTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666799999999999999999999999999999999999999999999999888876666553
No 135
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=76.88 E-value=47 Score=28.43 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e 142 (330)
.+|++-=..+.+.+..+...-..+.......+..+..+..++....
T Consensus 34 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~ 79 (141)
T PRK08476 34 KFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIR 79 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333344444444444444444444444444444444444443
No 136
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.68 E-value=84 Score=31.28 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=62.2
Q ss_pred cccccccccccccceeeEEeccCcccccc-ccCCCcccccCchHHHHHHHHHHHHHHHhhccCCH--HHHHHHH---HHH
Q 020141 32 MVKKPLTTSFFNGGVTRLRIAPSSRSHCY-RQGGGALNTRMNLFDRLARVVKSYANAILSSFEDP--EKILEQA---VLE 105 (330)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Msif~Rl~~lira~in~~ldk~EDP--e~mLeQ~---Ird 105 (330)
..++|+.++.-.||+..+-.-......-| .+.-|.++ |++.++++++..-+- ++.+++. +..
T Consensus 169 ~~~~p~p~p~~~~gas~~~~~~~d~~~~yp~n~~~~~~------------irasvisa~~eklR~r~eeeme~~~aeq~s 236 (365)
T KOG2391|consen 169 AYKPPLPPPPPPGGASALPYMTDDNAEPYPPNASGKLV------------IRASVISAVREKLRRRREEEMERLQAEQES 236 (365)
T ss_pred CcCCCCCCCCCCCccccCcccCCCCCCcCCCCcccccc------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999885444332222221 11112212 455544444332221 2222222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 020141 106 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 153 (330)
Q Consensus 106 me~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 153 (330)
++.--.+++.....+.+....||+++..++.+++=+..+.+.|+.+-.
T Consensus 237 lkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 237 LKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 333344455556667777888888888888888888888888766543
No 137
>PRK04406 hypothetical protein; Provisional
Probab=76.68 E-value=29 Score=26.86 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
..++++..|+..+.-++..++.|..-+......|..++.+...|.-|...
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888888888888888888888888887777777655544
No 138
>PRK00736 hypothetical protein; Provisional
Probab=76.53 E-value=21 Score=26.99 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
.++.+..|+..+.-++..++.|..-+.+-...|..++.+...|.-|...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777777777777777777777777777665544
No 139
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.17 E-value=97 Score=31.71 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=55.5
Q ss_pred hhccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 020141 89 LSSFEDPE--KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 166 (330)
Q Consensus 89 ldk~EDPe--~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~ 166 (330)
+..-|||. .-+-.+++-|...+.+.-.++......-...+..+...+.+... +..........|++.-.++++
T Consensus 136 l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~----~~~eq~~q~~kl~~~~~E~kk- 210 (420)
T COG4942 136 LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTT----LLSEQRAQQAKLAQLLEERKK- 210 (420)
T ss_pred hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-
Confidence 44455653 44555666665555555555554444444444444443333322 122233333445444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
....|..++...+...+.|..+-..|+..|..++....
T Consensus 211 ---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 211 ---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666666654444
No 140
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.66 E-value=1.1e+02 Score=32.32 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=58.4
Q ss_pred HHHHhhccC-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 020141 85 ANAILSSFE-DP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLARE 159 (330)
Q Consensus 85 in~~ldk~E-DP--e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAre 159 (330)
+++.+..++ +| +..|+-.++.+++++.+.+..+.+......-....++.+..++..-+...+. |++.+++|=..
T Consensus 247 l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~-lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 247 LEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK-LQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 333444333 55 6888888999999999999999999888888999999999999988888765 77777777533
No 141
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=75.63 E-value=53 Score=28.45 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.++++=-..+.+++.++......+-......+.++..++.++.+.-+.|..
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~ 99 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQK 99 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555444444443
No 142
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=75.53 E-value=40 Score=26.94 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL 156 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdL 156 (330)
|...+..+...+..+...+..+-.....++.+.......+....+....+|..-.+.|
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 62 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQL 62 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666667777777777777777777666544433
No 143
>PRK00295 hypothetical protein; Provisional
Probab=75.44 E-value=30 Score=26.15 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
++.+..|+..+.-++..++.|..-+.+....|..++.+...|..|...
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777676777776666666555444
No 144
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.44 E-value=85 Score=30.72 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
-|..++.-+| .-+++.|...=.+.+..-++.-...+...
T Consensus 114 lm~~Qf~lvK-~~aRl~ak~~WYeWR~kllegLk~~L~~~ 152 (312)
T smart00787 114 LMDKQFQLVK-TFARLEAKKMWYEWRMKLLEGLKEGLDEN 152 (312)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 44566655555555555444444444443
No 145
>PRK04325 hypothetical protein; Provisional
Probab=75.29 E-value=30 Score=26.57 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
..++.+..|+..+.-++..++.|..-+.+-...|..++.+...|.-|...
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777788888888777777777777777777777655544
No 146
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.12 E-value=1.1e+02 Score=32.64 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCcHHHHHHHHHHHHH-------------HHHHHHHH
Q 020141 113 MRQATAQVLASQKRLENKCKAAEQASEDW-----YRKAQLALQKGEEDLAREALKRRKS-------------YADNANAL 174 (330)
Q Consensus 113 ar~~lA~~~A~~k~le~k~~~~~~~~~~~-----e~rA~~AL~~G~EdLAreAL~rk~~-------------~e~~~~~l 174 (330)
-|.++|.+.-....++.++...+..+... .+++...+=.|.- |+ +|+..... ....+..+
T Consensus 343 ~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~-l~-eal~~~~e~~~p~e~~~~~~~e~~ei~~~ 420 (652)
T COG2433 343 ERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYP-LA-EALSKVKEEERPREKEGTEEEERREITVY 420 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCc-HH-HHHHHHHhhhccccccccccccccchhHH
Confidence 35567777777777777888777777665 4455555555542 11 11111111 11122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 175 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 175 e~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 218 (330)
...+......++.|+.....|+..+.+++.....|.++...++.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555444433
No 147
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=75.07 E-value=86 Score=31.29 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e 142 (330)
+.+-.+.+++..++.+.+....++.++..++..++..+
T Consensus 88 ~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~ 125 (352)
T COG1566 88 DYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAE 125 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555444444333
No 148
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=75.01 E-value=87 Score=30.65 Aligned_cols=52 Identities=21% Similarity=0.119 Sum_probs=26.4
Q ss_pred CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 94 DPE---KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 94 DPe---~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
||+ .+.+-.+..++.-+...+... ......-++.++.+++.+..+.+.+...
T Consensus 141 dP~~A~~ian~l~~~~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 141 DAEEAQKINQRLLKEGERLINRLNERA--RKDTIAFAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 783 666666555555555432222 2223334555555555555555554444
No 149
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.00 E-value=1e+02 Score=34.89 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
++.+..++..+..+......++..|..|+.+...+
T Consensus 341 ~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l 375 (1200)
T KOG0964|consen 341 KDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDL 375 (1200)
T ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555554444444
No 150
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.72 E-value=76 Score=29.81 Aligned_cols=111 Identities=12% Similarity=0.209 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLA-----SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 171 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A-----~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 171 (330)
..|...|..+...|..+-..+..+-. ....+.+.+++++........+=. .+....|..-+..-..+-..+
T Consensus 90 ~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f----~~~~~~Ae~El~~A~~LL~~v 165 (264)
T PF06008_consen 90 QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDF----TPQRQNAEDELKEAEDLLSRV 165 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444333 445566666666666666655521 122223333333333333333
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 172 NAL-KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 172 ~~l-e~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
... ..-+.+.+..+..+...|.+...|+.+++.-.+....
T Consensus 166 ~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 166 QKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 3334444444444555555555555555544444433
No 151
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.51 E-value=84 Score=30.20 Aligned_cols=73 Identities=12% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCcHHHHHHHHHHHH
Q 020141 93 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED----WYRKAQLALQKGEEDLAREALKRRK 165 (330)
Q Consensus 93 EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~----~e~rA~~AL~~G~EdLAreAL~rk~ 165 (330)
+.-..-|+-.|.+....+...+..+.+.-+.-+.++.+++.+...|.+ +.+||+.+-..|--.--..++-.-+
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~Sk 127 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSK 127 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccC
Confidence 333455667777888888888888888888888888888887777765 5578888877777443344443333
No 152
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.42 E-value=98 Score=30.94 Aligned_cols=39 Identities=8% Similarity=0.199 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
.+++...+..+.+....|..+...|.++-.++++.|.+.
T Consensus 279 ~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 279 QDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444433333
No 153
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.25 E-value=1.2e+02 Score=32.02 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
.+.|+.+++.++.+++..+.+.
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~ 306 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEA 306 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444333
No 154
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=74.15 E-value=71 Score=29.22 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 020141 75 DRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 154 (330)
Q Consensus 75 ~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 154 (330)
+.||++|+.. .....+.+...+.+.. ..|....-.-+++-|.+..+++.+..-+..+..+......+-....
T Consensus 72 k~fWRViKt~------d~~~AE~~Y~~F~~Qt-~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~- 143 (192)
T PF11180_consen 72 KAFWRVIKTQ------DEARAEAIYRDFAQQT-ARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQ- 143 (192)
T ss_pred CceeEeeecC------ChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4577777554 1112244443333222 2344444444555566666666666666666665554444332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 155 DLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 155 dLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki 199 (330)
.+..+.....+++..|+.+......++..|..+++.|+.+.
T Consensus 144 ----~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 144 ----QVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24455555666666666666666666666666666665543
No 155
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.87 E-value=54 Score=27.69 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 100 EQAVLEMNDDLVKMRQATAQVLASQKRLENK 130 (330)
Q Consensus 100 eQ~Irdme~~L~kar~~lA~~~A~~k~le~k 130 (330)
...+.++...+..++..+-......+.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~ 46 (132)
T PF07926_consen 16 KEQEEDAEEQLQSLREDLESQAKIAQEAQQK 46 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333333333333
No 156
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=73.81 E-value=46 Score=35.17 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=30.6
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 90 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 90 dk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
..+-||..+|++.=-.-.....++++.+-...+.++....++. -..++..|.++...
T Consensus 146 ~~lp~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~ 202 (555)
T TIGR03545 146 SQLPDPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEA 202 (555)
T ss_pred ccCCCHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 3455888888876655555555555555544444443333332 14455555555544
No 157
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.71 E-value=1.2e+02 Score=33.74 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 118 AQVLASQKRLENKCKAAEQASEDWYRKAQLA 148 (330)
Q Consensus 118 A~~~A~~k~le~k~~~~~~~~~~~e~rA~~A 148 (330)
-.....+..+..+++.....+..|...+..|
T Consensus 747 k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a 777 (970)
T KOG0946|consen 747 KKLENDQELLTKELNKKNADIESFKATQRSA 777 (970)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 3344444555555666666677777777755
No 158
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=73.64 E-value=1.3e+02 Score=32.11 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 141 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~ 141 (330)
-.+.+.++++.|..++..+..+...-+.+...+.++..+....
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~ 368 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEK 368 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777776666666666555543
No 159
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.57 E-value=31 Score=26.35 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
.++++..|+..+.-++..++.|..-+.+....|..++.+...|.-+...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777777777777777777777777777777766655443
No 160
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=73.53 E-value=43 Score=29.38 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVS---NTRLLESKIQEARSKKDTLKARAQSAKTAT 220 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~---~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~ 220 (330)
..++..++.++.....++..|+. ....|+.+|++++.+....+..++..-+..
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777 677777777777777775555544443333
No 161
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.40 E-value=38 Score=26.08 Aligned_cols=63 Identities=14% Similarity=0.262 Sum_probs=52.5
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020141 89 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 151 (330)
Q Consensus 89 ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 151 (330)
+..+.|.+.+|.-.|.++++.-....+.+..+.-...-++++-+++..+..-|+++.+.-|.+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334557788899999999998888888888888888889999999999999999998876644
No 162
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.39 E-value=76 Score=29.21 Aligned_cols=17 Identities=0% Similarity=0.251 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020141 104 LEMNDDLVKMRQATAQV 120 (330)
Q Consensus 104 rdme~~L~kar~~lA~~ 120 (330)
-+++.++.+++..++.+
T Consensus 96 p~le~el~~l~~~l~~~ 112 (206)
T PRK10884 96 PDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555555543
No 163
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=72.90 E-value=1.1 Score=48.20 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE-DLAREALKRRKSYADNANALKAQ 177 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E-dLAreAL~rk~~~e~~~~~le~q 177 (330)
+...|+.+++.+.+...........-..++..+..++.+...|...|..|-.--|| |..|+-..+...++..++.|+.-
T Consensus 244 l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkK 323 (713)
T PF05622_consen 244 LRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKK 323 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655555555555555677778888888888898888887666665 88888888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 178 LDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 178 le~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
++. +..|+.++..|+.+...+-...
T Consensus 324 Led----~~~lk~qvk~Lee~N~~l~e~~ 348 (713)
T PF05622_consen 324 LED----LEDLKRQVKELEEDNAVLLETK 348 (713)
T ss_dssp -----------------------------
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 665 2333444444444444333333
No 164
>PRK02119 hypothetical protein; Provisional
Probab=72.87 E-value=36 Score=26.12 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
...++++..|+..+.-++..++.|..-+.+-...|..++++...|.-+...
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777888888888888888887777777777777777777655443
No 165
>PRK10869 recombination and repair protein; Provisional
Probab=72.77 E-value=1.3e+02 Score=31.66 Aligned_cols=80 Identities=15% Similarity=0.024 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
+-+.+++.=..+.++++.+..+...+....++++-++-++++++.- .++.|+++-=.+-..+....+.-.+.+...+
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~---~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~ 231 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEF---APQPGEFEQIDEEYKRLANSGQLLTTSQNAL 231 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666677777777777777777777777666543 3566766543344444444444444444444
Q ss_pred HHH
Q 020141 179 DQQ 181 (330)
Q Consensus 179 e~~ 181 (330)
+.+
T Consensus 232 ~~L 234 (553)
T PRK10869 232 QLL 234 (553)
T ss_pred HHh
Confidence 433
No 166
>PF13514 AAA_27: AAA domain
Probab=72.69 E-value=1.8e+02 Score=33.23 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 118 AQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR----EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTR 193 (330)
Q Consensus 118 A~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr----eAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~ 193 (330)
.........++.++..++..+..|+.++..-+..-..++.. ..+......-.........++.....+..++..+.
T Consensus 739 ~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~ 818 (1111)
T PF13514_consen 739 REALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELE 818 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777777888888887776654443321111 33333333333333444455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020141 194 LLESKIQEARSKKDTLK 210 (330)
Q Consensus 194 ~Le~Ki~e~k~k~~~Lk 210 (330)
.++.++..++.++..|.
T Consensus 819 ~~~~~l~~~~~~l~~L~ 835 (1111)
T PF13514_consen 819 QAEEELEELEAELAELL 835 (1111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 167
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.68 E-value=44 Score=34.66 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 130 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k 130 (330)
..-|+..|+++++.+..++..+..+-+..+-++.-
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 107 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDI 107 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555555544443
No 168
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=72.67 E-value=1.5 Score=48.40 Aligned_cols=214 Identities=17% Similarity=0.261 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 149 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~ED---Pe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL 149 (330)
+..|=...+.+-+.++-...+. .-+.+++.+.|+.+.+..+......+....++++.++..+...+++-..-+..|.
T Consensus 606 ~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ 685 (859)
T PF01576_consen 606 VSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAE 685 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455554444333332 3577888888888888887777777777777788888777777776666666555
Q ss_pred hcCcH----------HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 150 QKGEE----------DLA------REALKRRKSYADNANALKAQLDQQKNVVNN-LVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 150 ~~G~E----------dLA------reAL~rk~~~e~~~~~le~qle~~~~~v~~-Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
.+.+- +|. ..+-..+..++.++..|+..++.++..... -+..+..|+.+|.++..+++.=.-+
T Consensus 686 ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~ 765 (859)
T PF01576_consen 686 EKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRR 765 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHH
Confidence 44431 111 122345666777777777777777665443 3667778888888888777765544
Q ss_pred HHHH-----HHHHHHHHHhcCCCC-----CcHHHHHHHHHHHHHhHHHHHHHhhccc------CCChhHHHhhhcc--CC
Q 020141 213 AQSA-----KTATKVSEMLGNVNT-----SSALSAFEKMEEKVLTMESQADSLNQLT------TDDLEGKFALLET--SS 274 (330)
Q Consensus 213 ~~~A-----kAq~~~~~~~~~~~~-----~sa~~~feRmEeki~~~EA~aeA~~eL~------~~~Ld~k~~~le~--~~ 274 (330)
...+ +.-.++.+....+.- ....+.++++..||..+--.++-..+.. ..-+...|...+. ..
T Consensus 766 ~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~e~~~~ 845 (859)
T PF01576_consen 766 RAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAEERAEA 845 (859)
T ss_dssp -----------------------------------------------------------------SSSSHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 222233443333221 1223444444444443333332222211 2234444444432 35
Q ss_pred HHHHHHHHHHHc
Q 020141 275 VDDDLANLKKEL 286 (330)
Q Consensus 275 vd~eLa~LKa~l 286 (330)
++..|..||.+.
T Consensus 846 ~e~~l~~lr~~~ 857 (859)
T PF01576_consen 846 AERELNKLRAKS 857 (859)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 888999998764
No 169
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=72.32 E-value=1e+02 Score=30.20 Aligned_cols=63 Identities=6% Similarity=0.112 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKA 133 (330)
Q Consensus 71 Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~ 133 (330)
-|+|+||+.=++..+..++.+++.-..-+|..+.+++..-....+..+.+-........-|.+
T Consensus 72 ~~~l~klf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~ 134 (333)
T PF05816_consen 72 KGFLGKLFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQE 134 (333)
T ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777666666777778888888777777777777777766666665544444333333333
No 170
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=72.17 E-value=4.1 Score=33.18 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=39.3
Q ss_pred hhHHHhhhccC--CHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCCCh--hhHHHHHHHHHHhhhc
Q 020141 263 LEGKFALLETS--SVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRD--AEIEKELNELRQRAKD 329 (330)
Q Consensus 263 Ld~k~~~le~~--~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 329 (330)
|-.++..++.+ .+-.+|.++|.+.+..+..+.+|+|.++ .....|... --++.++|+|..|+.+
T Consensus 20 lRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~---~~~~~~l~~eLk~a~~qi~~Ls~kv~e 87 (96)
T PF11365_consen 20 LRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSP---SGREAELQEELKLAREQINELSGKVME 87 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCC---ccccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44556666542 4788999999998765554556666443 222223311 1245789999988764
No 171
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=72.12 E-value=1.2 Score=36.98 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 148 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~A 148 (330)
+|.+|..+...+..+....+.+...-..++.++..+......+.+....|
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 45556666666666666655555555555555555555555544444333
No 172
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=71.83 E-value=83 Score=28.97 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 98 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 146 (330)
Q Consensus 98 mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~ 146 (330)
.-+-.+.++..++..+...+-.+.+....+.++.+.+...+....++-.
T Consensus 106 ~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk 154 (205)
T KOG1003|consen 106 AAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK 154 (205)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3344455556666666666666666655666666665555555555433
No 173
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.81 E-value=1.2e+02 Score=32.42 Aligned_cols=39 Identities=8% Similarity=0.168 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 107 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 145 (330)
Q Consensus 107 e~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA 145 (330)
...+.+.+..+-++..+-..|+..+.+++..+.+++.+-
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445555555555555444443
No 174
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=71.70 E-value=74 Score=28.37 Aligned_cols=51 Identities=10% Similarity=0.179 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.+|+.=-..+.+++..+......+-......+.++...+.+....-+.|..
T Consensus 58 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ 108 (181)
T PRK13454 58 AVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRA 108 (181)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555543
No 175
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=71.16 E-value=63 Score=27.29 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 100 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 100 eQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e 142 (330)
++.++.+...+.+.+..+..+......+...+.++..-.+..+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777666666666666666655554444
No 176
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=70.93 E-value=73 Score=27.95 Aligned_cols=99 Identities=13% Similarity=0.188 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 106 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 185 (330)
Q Consensus 106 me~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v 185 (330)
.+....++...+..++......+.++..+...-.+|.++...=+..|= ...+...|+..+..|+..++++...+
T Consensus 14 ~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~------s~~q~~nyq~fI~~Le~~I~q~~~~~ 87 (148)
T COG2882 14 AKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGV------SAAQWQNYQQFISQLEVAIDQQQSQL 87 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777888888888899999999999999988887777774 44556788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 186 NNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 186 ~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
..+...+......+.+.+.++..+.
T Consensus 88 ~~~~~~ve~~r~~w~ek~~~~k~~e 112 (148)
T COG2882 88 SKLRKQVEQKREIWQEKQIELKALE 112 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877777777666554
No 177
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=70.47 E-value=87 Score=28.68 Aligned_cols=59 Identities=14% Similarity=0.212 Sum_probs=26.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 85 ANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 85 in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
+...++.+||--.-|--.|.+++.++.-..+.+- ..|-++..++.+...+..+++....
T Consensus 27 L~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~----~aK~l~eEledLk~~~~~lEE~~~~ 85 (193)
T PF14662_consen 27 LQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ----KAKALEEELEDLKTLAKSLEEENRS 85 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455544444332222 3334444444444444444444433
No 178
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=70.24 E-value=1.3e+02 Score=30.72 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 143 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~ 143 (330)
|-..-|+..|-+.+.++..++..+.+.....+.+++++......+..++.
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666665555543
No 179
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=70.22 E-value=1.3e+02 Score=30.56 Aligned_cols=32 Identities=31% Similarity=0.249 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 189 VSNTRLLESKIQEARSKKDTLKARAQSAKTAT 220 (330)
Q Consensus 189 k~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~ 220 (330)
..++.+|+.+++..+.-.++|..|.+....+.
T Consensus 372 ~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 372 QVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556667777777777777777766665554
No 180
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.14 E-value=28 Score=26.29 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
.++.++.|...+..+...++.|+..+..|..++.++.
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555555555555555554443
No 181
>PLN02742 Probable galacturonosyltransferase
Probab=70.12 E-value=45 Score=35.07 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDL-AREALKRRKSYADNANALKAQ 177 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdL-AreAL~rk~~~e~~~~~le~q 177 (330)
.|-.++.|+++|.-||.-+ .+|..+.-.+-..++..++.+.+.-.-.|..-++ .+ -..+..+.+..+..+..-+..
T Consensus 72 ~~~~~~~l~dql~~Ak~y~--~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~-~~~~~~~~~~~~~m~~~i~~ak~~ 148 (534)
T PLN02742 72 ATSFSRQLADQITLAKAYV--VIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGE-PITVEEAEPIIRDLAALIYQAQDL 148 (534)
T ss_pred hHHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccc-cCCchhHHHHHHHHHHHHHHHHhc
Confidence 3556778999999999886 6777777677777888888887776666644333 22 367777777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 178 LDQQKNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 178 le~~~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
.-.....+.+|+..+..+|.++.-.+.+
T Consensus 149 ~~d~~~~~~klr~~l~~~e~~~~~~~~q 176 (534)
T PLN02742 149 HYDSATTIMTLKAHIQALEERANAATVQ 176 (534)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777778888887777776655444
No 182
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.88 E-value=1.1e+02 Score=29.77 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
.+...+.........+......++.++.-...+++.|+
T Consensus 96 ~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 96 EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555444
No 183
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=69.76 E-value=1.5 Score=48.49 Aligned_cols=138 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 71 MNLFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 71 Msif~Rl~~lira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.+-+.|....+.+.+.++=..+++- -..|.-.++.++.++..++..+-.-......+++++..+..++..|..+...
T Consensus 231 ~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~ 310 (859)
T PF01576_consen 231 LSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE 310 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4456677777777777776666653 3566777888888888888888877778888888889999999999888776
Q ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 148 ALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 148 AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
-....-+. .=.-++.+...+..++.+++.....+..|+.....|...+.++...++...+.
T Consensus 311 e~~~~~Ee----lEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~ 371 (859)
T PF01576_consen 311 EAEQRTEE----LEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAA 371 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred HhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443222 22234556667777777888887888877777777777777777766655544
No 184
>PLN02829 Probable galacturonosyltransferase
Probab=69.75 E-value=25 Score=37.53 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
+.+-|-.++.|+++|..||.-+ .+|..+.-.+=..++...+.+.+.-.-.|-. +-||=..+..+.+..+..+...+
T Consensus 178 ~~~~d~~v~~lkDql~~AkaY~--~iak~~~~~~l~~el~~~i~e~~r~l~~a~~--d~~lp~~~~~~~~~m~~~i~~ak 253 (639)
T PLN02829 178 TVMPDARVRQLRDQLIKAKVYL--SLPATKANPHFTRELRLRIKEVQRVLGDASK--DSDLPKNANEKLKAMEQTLAKGK 253 (639)
T ss_pred ccCchHHHHHHHHHHHHHHHHH--HHhccCCcHHHHHHHHHHHHHHHHHHhhccC--CCCCChhHHHHHHHHHHHHHHHH
Confidence 3678899999999999999885 6777666677777888888887665555544 77788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
...-.....+.+|+.-+..+|.++.-.+.+-
T Consensus 254 ~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~ 284 (639)
T PLN02829 254 QMQDDCSIVVKKLRAMLHSAEEQLRVHKKQT 284 (639)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877788888888888888887776665443
No 185
>PRK00295 hypothetical protein; Provisional
Probab=69.46 E-value=43 Score=25.33 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
.++.+..|-..+..+..+++.|+..++.|..++.++
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555554444443
No 186
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.19 E-value=69 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 020141 196 ESKIQEARSKKDTLK 210 (330)
Q Consensus 196 e~Ki~e~k~k~~~Lk 210 (330)
+..|.+++.+.+.|.
T Consensus 104 e~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 104 EKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444333
No 187
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.73 E-value=1e+02 Score=28.74 Aligned_cols=39 Identities=10% Similarity=0.291 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
...++..++..++.+...++..+..+.+++..+...+..
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333
No 188
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=68.62 E-value=1.2e+02 Score=32.56 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCCc
Q 020141 156 LAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS--AKTATKVSEMLGNVNTSS 233 (330)
Q Consensus 156 LAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~--AkAq~~~~~~~~~~~~~s 233 (330)
+++.+.........++..++.++.+...+...|+..+..|. +++-+.+.+.... --|.+++ .-.-|..+
T Consensus 372 ~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~------~~r~dW~laEae~Ll~lA~q~L---~l~~dv~~ 442 (656)
T PRK06975 372 KTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS------RNRDDWMIAEVEQMLSSASQQL---QLTGNVQL 442 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cChhhhHHHHHHHHHHHHHHHH---HHhCCHHH
Confidence 44445444445555555555555555444444444444331 2233344433221 1222222 11234566
Q ss_pred HHHHHHHHHHHHHhHH
Q 020141 234 ALSAFEKMEEKVLTME 249 (330)
Q Consensus 234 a~~~feRmEeki~~~E 249 (330)
|...|+-..+++.++.
T Consensus 443 A~~~L~~AD~~La~~~ 458 (656)
T PRK06975 443 ALIALQNADARLATSD 458 (656)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7777777777766544
No 189
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=68.50 E-value=3.4 Score=34.34 Aligned_cols=65 Identities=9% Similarity=0.226 Sum_probs=23.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 83 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 83 a~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.-|+..|+.+.+-...|...+.++...+..+...+...-.....+.+.+..++..+.+....|..
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~ 85 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEE 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 34566666666666667777777777777777777776666666666666666666555554443
No 190
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=68.41 E-value=1.3e+02 Score=30.00 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
-+..|.++..++.+.+..++.......--.-++..++.+++.+..+
T Consensus 252 ~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~ 297 (444)
T TIGR03017 252 ANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQ 297 (444)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 3445556666666666666655444333333333444444444443
No 191
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.27 E-value=23 Score=29.34 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCcHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR--------KAQLALQKGEEDLARE 159 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~--------rA~~AL~~G~EdLAre 159 (330)
.-+++.|..+-+++..++..+..++-+-..|..+-..++..+.+.+. ....-+..|.+.||+-
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~L 81 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARL 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHH
Confidence 34889999999999999999999999999999999999999988865 3334466777877764
No 192
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=68.14 E-value=1.7e+02 Score=31.05 Aligned_cols=10 Identities=50% Similarity=0.750 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 020141 315 EIEKELNELR 324 (330)
Q Consensus 315 ~~~~~~~~~~ 324 (330)
|.-.||.||+
T Consensus 414 E~~rel~Elk 423 (546)
T PF07888_consen 414 ENRRELQELK 423 (546)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 193
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=68.00 E-value=1.2e+02 Score=29.36 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATA 118 (330)
Q Consensus 103 Irdme~~L~kar~~lA 118 (330)
+.+.+.++..++..+.
T Consensus 88 l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 88 VAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 194
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=67.98 E-value=1.7e+02 Score=31.07 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=28.4
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 88 ILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 88 ~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e 142 (330)
++|.+.+......+.++..=+...++++.+.......+...++.+-++-++++++
T Consensus 144 lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele 198 (557)
T COG0497 144 LLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELE 198 (557)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554433332445555555555555555555555555555555555554444
No 195
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=67.90 E-value=1.5e+02 Score=30.31 Aligned_cols=127 Identities=25% Similarity=0.277 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020141 73 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 152 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 152 (330)
|=.-+..++.-..|++-..+..-+..+.--|+++++...+..-.++..+-+-...+..+..++..+.+-+.-.+.|...=
T Consensus 250 LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRl 329 (421)
T KOG2685|consen 250 LREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRL 329 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHH
Confidence 33445555666666666666667788888889999988888888888888888888888888888777777666665432
Q ss_pred c-----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 153 E-----------EDLAREAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 153 ~-----------EdLAreAL-~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki 199 (330)
+ -|.|...| .+...+...+..|+..+++.+.....|......|+..|
T Consensus 330 e~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di 388 (421)
T KOG2685|consen 330 ENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDI 388 (421)
T ss_pred HHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 14443332 23344444555555555555555444444444444443
No 196
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=67.77 E-value=28 Score=29.02 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 141 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~ 141 (330)
|++.|..+-.++..++..+..++-+-..|+.+-..++..+.+.
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999988888888876
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=67.37 E-value=1.9e+02 Score=31.34 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQV 120 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~ 120 (330)
.-|+..|.++++++.+++..+...
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444
No 198
>PRK02793 phi X174 lysis protein; Provisional
Probab=66.82 E-value=49 Score=25.28 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
|..++|.+++=.+..++.+...|......|..|+.++..+..++..+
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555555555555555555555555555443
No 199
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.80 E-value=81 Score=26.90 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
.+++..+...+++....++.+...+..|+.||.++
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444
No 200
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=66.64 E-value=1.5e+02 Score=30.01 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 108 DDLVKMRQATAQVLASQKRLENKCKAAEQA 137 (330)
Q Consensus 108 ~~L~kar~~lA~~~A~~k~le~k~~~~~~~ 137 (330)
+-...+|..+.++..+.-.|+++-.+++..
T Consensus 285 elar~Lr~~I~~VarENs~LqrQKle~e~~ 314 (442)
T PF06637_consen 285 ELARSLRAGIERVARENSDLQRQKLEAEQG 314 (442)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 334445556666666666666665555544
No 201
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=66.51 E-value=1.1e+02 Score=28.12 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.+|+.=-..+..+|..+......+-......+.++.+.+.++...-+.|+.
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ 130 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAARE 130 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555555666666666666655555543
No 202
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=66.50 E-value=1e+02 Score=28.03 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQAT 117 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~l 117 (330)
.+.|..-+|...+....+.+.+
T Consensus 70 vr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 70 VRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333
No 203
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=66.22 E-value=1.2e+02 Score=28.77 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 140 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~ 140 (330)
+.+......|.++..........+..+...-+.+..++..+..++..
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~ 234 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELES 234 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhc
Confidence 33444444444555444444444444444444444444444444444
No 204
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=66.17 E-value=2.2e+02 Score=31.76 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 020141 236 SAFEKMEEKVLTMESQADS 254 (330)
Q Consensus 236 ~~feRmEeki~~~EA~aeA 254 (330)
...+|.-+....|-++..+
T Consensus 452 gsrrraIeQcnemv~rir~ 470 (1265)
T KOG0976|consen 452 GSRRRAIEQCNEMVDRIRA 470 (1265)
T ss_pred hhHhhHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 205
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=65.65 E-value=72 Score=27.66 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 020141 117 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 153 (330)
Q Consensus 117 lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 153 (330)
+..-...-+.++...........+...++.--|..++
T Consensus 57 le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~ 93 (160)
T PF13094_consen 57 LERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDD 93 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccc
Confidence 3333333334444444444444444444444444443
No 206
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=65.51 E-value=1.1e+02 Score=28.16 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
+.+.+-+|..-+......++.+++...+-. ..+...... +...++. +.....+.+.....+-..+
T Consensus 35 ~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~----------~~~~~~i~~-~~~erdq----~~~dL~s~E~sfsdl~~ry 99 (207)
T PF05010_consen 35 LHKENQEMRKIMEEYEKTIAQMIEEKQKQK----------ELSEAEIQK-LLKERDQ----AYADLNSLEKSFSDLHKRY 99 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhH----------HhHHHHHHH-HHhhHHH----HHHHHHHHHhhHHHHHHHH
Confidence 455555666666666666666665533221 111111111 1122222 3334455666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 179 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 218 (330)
+.++..+..++.+-..|+..++++..+....-.|+++-++
T Consensus 100 ek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~ 139 (207)
T PF05010_consen 100 EKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA 139 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666666666666666666666555433
No 207
>PRK04406 hypothetical protein; Provisional
Probab=65.32 E-value=53 Score=25.37 Aligned_cols=46 Identities=4% Similarity=0.050 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 208 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 208 (330)
|..++|.+++-.+..++.+...|......|..|+.++..+..+...
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444444433
No 208
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.24 E-value=76 Score=28.29 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLES 197 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~ 197 (330)
....+.++.++.+++..+..++.|+.+...+..
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666655544
No 209
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=65.18 E-value=1.1e+02 Score=27.97 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.++++-.+.|++..+......-..+++..++++++...+..++..+.+.-..
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4666777777777777777777888888888888888888888877776555
No 210
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=65.13 E-value=1.2e+02 Score=28.12 Aligned_cols=118 Identities=21% Similarity=0.284 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHH------HHHH
Q 020141 169 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAF------EKME 242 (330)
Q Consensus 169 ~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~f------eRmE 242 (330)
..+..|...+-.-+..+-.|+..+.+.+.|+=+= ..+..+..-+.+--+..+....++.....+...+| -.-.
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEE-s~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~ 135 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKYLEE-SAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMAN 135 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhh
Confidence 4566777777777888888888888888877332 22222222111111122233234333322322333 3333
Q ss_pred HHHHhHHHHHHHhhcccCCChhHHHhhhccCCHHHHHHHHHHHcCCCCC---CCCCCCCCC
Q 020141 243 EKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSK---KGELPPGRA 300 (330)
Q Consensus 243 eki~~~EA~aeA~~eL~~~~Ld~k~~~le~~~vd~eLa~LKa~l~~~~~---~~~~~~~~~ 300 (330)
.|+..||.+..+ |..++. +-|...--|+........ .|.+.|.+|
T Consensus 136 ~K~qemE~RIK~--------LhaqI~-----EKDAmIkVLQqrs~~~~~k~s~~slrpA~s 183 (205)
T PF12240_consen 136 RKCQEMENRIKA--------LHAQIA-----EKDAMIKVLQQRSRKDPGKASQGSLRPARS 183 (205)
T ss_pred hhHHHHHHHHHH--------HHHHHH-----HHHHHHHHHHhhcccCCCcccccCCCCCCC
Confidence 444444444332 233332 246777777776655443 455666654
No 211
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=65.12 E-value=2.1e+02 Score=31.18 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 98 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 145 (330)
Q Consensus 98 mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA 145 (330)
-..|.+.-+......+...+.++.+....++..+..++.+..-+....
T Consensus 493 ~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~ 540 (698)
T KOG0978|consen 493 KANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNE 540 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 345666666666666666666666666666666666665555544443
No 212
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=65.06 E-value=2.8e+02 Score=32.57 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 169 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 169 ~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
+++..+....+.....+..-+..+.+++.++.+...+......
T Consensus 340 ~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~ 382 (1353)
T TIGR02680 340 ADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAER 382 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 213
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.86 E-value=2.3e+02 Score=31.38 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhccCCH
Q 020141 78 ARVVKSYANAILSSFEDP 95 (330)
Q Consensus 78 ~~lira~in~~ldk~EDP 95 (330)
..++-|-+.++|-..+|+
T Consensus 339 ~KYLLgELkaLVaeq~Ds 356 (861)
T PF15254_consen 339 LKYLLGELKALVAEQEDS 356 (861)
T ss_pred HHHHHHHHHHHHhccchH
Confidence 344556666665555554
No 214
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=64.78 E-value=73 Score=25.67 Aligned_cols=94 Identities=17% Similarity=0.272 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 109 DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR---KAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 185 (330)
Q Consensus 109 ~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~---rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v 185 (330)
.+...+..+..+......++.++.+...-...+.. -...=..-|. ++.+ ....+-...++..++.....+
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~------vfv~-~~~~ea~~~Le~~~e~le~~i 79 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGN------VLVK-QEKEEARTELKERLETIELRI 79 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhh------HHhh-ccHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555544433333321 1111111122 3332 344555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 186 NNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 186 ~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
..+..++..++.++.+++.++..+
T Consensus 80 ~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 80 KRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665543
No 215
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=64.75 E-value=2.4e+02 Score=31.63 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 020141 108 DDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK---RRKSYADNANALKAQLDQQKNV 184 (330)
Q Consensus 108 ~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~---rk~~~e~~~~~le~qle~~~~~ 184 (330)
.++.++...+-...-..-..+++|+.+.....++...=...|++.++ ..+.+=. -+.+.++....|..++++...+
T Consensus 403 ~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~d-i~kQle~~~~s~~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 403 TQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDD-IQKQLESAEQSIDDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555556777777777777776666666666554 2221111 1113445555555556665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
...+....+.....++.+++++..+.-+
T Consensus 482 ~~~~~~K~e~~~~~le~l~~El~~l~~e 509 (980)
T KOG0980|consen 482 AGRAETKTESQAKALESLRQELALLLIE 509 (980)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666666665555443
No 216
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.69 E-value=2e+02 Score=30.56 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH---------HHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR---------EALKRRKS 166 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr---------eAL~rk~~ 166 (330)
-.+.+-.|..+...|..+....+.+....++++-+++++.....+-+..+..+-.+-++.+.+ -+..++..
T Consensus 87 k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~ 166 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKA 166 (546)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666665555555444444432222 23445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTR-------LLESKIQEARSKKDTLKA 211 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~-------~Le~Ki~e~k~k~~~LkA 211 (330)
+++.+..|+.+...+...+..++.++. +++++++.+..+++.++.
T Consensus 167 le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 167 LEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 666666666666666666666665444 345555555555555543
No 217
>PRK02119 hypothetical protein; Provisional
Probab=64.46 E-value=57 Score=25.01 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 208 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 208 (330)
|..++|.+++-.+..++.+...|..-...|..|+.++..+..++..
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444444443
No 218
>PRK00736 hypothetical protein; Provisional
Probab=64.35 E-value=60 Score=24.52 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 201 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e 201 (330)
.++.++.|-..+..+...++.|...++.|..++.+
T Consensus 17 qe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 17 QEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444
No 219
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=64.29 E-value=29 Score=32.91 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 208 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 208 (330)
+|..+++.++..|.+|+.++.++..+|++++.+...
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333
No 220
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.14 E-value=58 Score=24.29 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
+...+...+...-..+..+.......+.|..+|..++.+.+.+.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444444444444444433
No 221
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=64.11 E-value=1.5e+02 Score=29.02 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 106 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV 185 (330)
Q Consensus 106 me~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v 185 (330)
+.++|.-+|..+..+......-+.+|-+-.+-+.+--+-.+.+++-+.|.|.+.+ -.|..++..|...-..+...+
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi----~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTI----FQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHhhhHHHHHHHHHHHhHHH
Confidence 4677888888888888887778888887777777777888889999999888766 457777778877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 186 NNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 186 ~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
+.=+.+-..|+..|+.++.++....--
T Consensus 80 e~EKq~kerLEtEiES~rsRLaaAi~d 106 (305)
T PF14915_consen 80 EKEKQNKERLETEIESYRSRLAAAIQD 106 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777888888887777665433
No 222
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.94 E-value=2.2e+02 Score=32.64 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhcCcHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 137 ASEDWYRKAQLALQKGEEDLA-------------REALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 137 ~~~~~e~rA~~AL~~G~EdLA-------------reAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
.+.+|+.-=..|...+.++|. ...+.+..+++..+..++.++.........|...+..++.-+.+.+
T Consensus 364 ~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~ 443 (1141)
T KOG0018|consen 364 QVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELK 443 (1141)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444455555555444 3345566777777777777776666666666666666666666665
Q ss_pred HHHHHHHHH
Q 020141 204 SKKDTLKAR 212 (330)
Q Consensus 204 ~k~~~LkAr 212 (330)
...+.+.-.
T Consensus 444 ~d~~~l~~~ 452 (1141)
T KOG0018|consen 444 HDLDSLESL 452 (1141)
T ss_pred hcHHHHHHH
Confidence 555555433
No 223
>PHA03190 UL14 tegument protein; Provisional
Probab=63.60 E-value=1.2e+02 Score=27.72 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHH-HhhcccCC---ChhHHHhhhcc
Q 020141 197 SKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQAD-SLNQLTTD---DLEGKFALLET 272 (330)
Q Consensus 197 ~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~ae-A~~eL~~~---~Ld~k~~~le~ 272 (330)
.+|+.+++|...++.+.....+...+=.....+=..+-.+.|+.-++++...|...+ |..+++.+ +.+.. ..+
T Consensus 65 aRle~vrQk~~~Iq~rVE~Q~a~r~~L~~nRRyL~PdF~d~ld~~eD~l~d~E~~L~~a~~ei~l~~~~~~d~~-d~l-- 141 (196)
T PHA03190 65 KRLSSVRCHIARIKAATEGQRALALELDGYRRYLRNDFLDTFAAEADAIADAEIDLECAEAEIALHIPADEDRR-DSL-- 141 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccc-ccc--
Confidence 344555555555555544433322221111122233556899999999988887654 45555321 11110 111
Q ss_pred CCHHHHHHHHHHHcCCCCCCCCCCC--CCC-------cCCCCCCCCCCChhh
Q 020141 273 SSVDDDLANLKKELSGSSKKGELPP--GRA-------AASSTNTAFPFRDAE 315 (330)
Q Consensus 273 ~~vd~eLa~LKa~l~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~ 315 (330)
+.-|+.|- +|=+|.+.+.+.-+|- -++ |-++..+...|.|.+
T Consensus 142 d~ede~LL-~kW~Le~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (196)
T PHA03190 142 DCEEDDLL-LKWQLEGANPPSLLPIPHAPSGESRGNSPKSPPGPSPTFQDAE 192 (196)
T ss_pred CccHHHHH-HHHHHccCCCCccCCCCCCCCccccCCCCCCCCCCCCCccccc
Confidence 22344443 5667777665555432 233 333344555676654
No 224
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.50 E-value=76 Score=25.44 Aligned_cols=33 Identities=6% Similarity=0.143 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020141 120 VLASQKRLENKCKAAEQASEDWYRKAQLALQKG 152 (330)
Q Consensus 120 ~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 152 (330)
.-..++.+..+++.++.+..........+...|
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 334555666667777777777777777777776
No 225
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=63.40 E-value=45 Score=35.78 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
+.+-|-.++.|+++|.-||.- -.+|..+.-.+-..++...+.+.+.-.-.|. .+.||=..++.+.+..+..+...+
T Consensus 192 ~~~~d~~vk~lkDQl~~AkaY--~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~--~d~dlp~~~~~k~~~M~~~l~~ak 267 (657)
T PLN02910 192 SPNSDSILKLMRDQIIMAKAY--ANIAKSNNVTNLYVSLMKQFRENKRAIGEAT--SDAELHSSALDQAKAMGHVLSIAK 267 (657)
T ss_pred ccCcHHHHHHHHHHHHHHHHH--HHHhccCCcHHHHHHHHHHHHHHHHHHhhcc--cccccCchHHHHHHHHHHHHHHHH
Confidence 466788899999999999887 4455555555566667777776666555543 677888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
...-.....+.+|+.-+..+|.++.-.+.+-
T Consensus 268 ~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs 298 (657)
T PLN02910 268 DQLYDCHTMARKLRAMLQSTERKVDALKKKS 298 (657)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887776665443
No 226
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=63.39 E-value=2.4e+02 Score=31.08 Aligned_cols=47 Identities=6% Similarity=0.125 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 145 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA 145 (330)
|++.+.+.-..+-++-+.+..+..+...|+.++....+++...+...
T Consensus 54 le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t 100 (766)
T PF10191_consen 54 LEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDT 100 (766)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Confidence 55555555555556666666666666666666666666665554433
No 227
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=63.28 E-value=2.1e+02 Score=30.55 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCcHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ------LALQKGEEDLAREALKRRKSYAD 169 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~------~AL~~G~EdLAreAL~rk~~~e~ 169 (330)
..-|...|.++..++.++...+.......+++..++.+.......+++... .-|..+++.+++ .-.-...-.+
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~k-L~~~v~~s~~ 408 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAK-LQALVEASEQ 408 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHH
Confidence 355555566666666666666555555555555555555555444443332 224444444422 1122223344
Q ss_pred HHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKN 183 (330)
Q Consensus 170 ~~~~le~qle~~~~ 183 (330)
.+..|..+|+....
T Consensus 409 rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 409 RLVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555554433
No 228
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.27 E-value=2.8e+02 Score=31.82 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHh
Q 020141 92 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLE---------------------NKCKAAEQASEDWYRKAQLALQ 150 (330)
Q Consensus 92 ~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le---------------------~k~~~~~~~~~~~e~rA~~AL~ 150 (330)
++.-..-|++-|.-+..++...+.++.+..-+....+ ..++.++.++.+.+++.-.-.-
T Consensus 681 v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~ 760 (1141)
T KOG0018|consen 681 VESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFC 760 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666666666666666666555444433333 3333444444444444332211
Q ss_pred c--C-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 151 K--G-------EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 151 ~--G-------~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
. | +..+..+-..+..+++++...++.+++=.++ ......+..++..++......+-++-
T Consensus 761 ~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~ 828 (1141)
T KOG0018|consen 761 RRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKK 828 (1141)
T ss_pred hhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 1 1 1244677777888888888888888774333 34444444455555555444444444
No 229
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=62.70 E-value=1.4e+02 Score=28.05 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHhhccC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFE--DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 141 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~E--DP-e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~ 141 (330)
||+++.+.|.+- --+++ || =.-..+||.+++.+|.++-..+-.+...++.+-.-+.+...-+..+
T Consensus 2 ~~~~~~~~~~~~----~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L 69 (234)
T cd07664 2 MVNKAADAVNKM----TIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAML 69 (234)
T ss_pred hhhHHHHHHHhc----cccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766543 33444 44 2556789999999999999999888888887777666665544443
No 230
>PRK04325 hypothetical protein; Provisional
Probab=62.47 E-value=66 Score=24.71 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 201 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e 201 (330)
.++.++.|-..+..+..+++.|+..++.|..++.+
T Consensus 21 QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 21 QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444
No 231
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.38 E-value=1.8e+02 Score=29.48 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 119 QVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 119 ~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
...+....+..++..++.++..++.....
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 197 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNA 197 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666666665555443
No 232
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=61.82 E-value=1.8e+02 Score=29.05 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 020141 103 VLEMNDDLVKM 113 (330)
Q Consensus 103 Irdme~~L~ka 113 (330)
+...+.++..+
T Consensus 101 l~~A~a~l~~a 111 (390)
T PRK15136 101 FEKAKTALANS 111 (390)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 233
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.76 E-value=2.2e+02 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=8.6
Q ss_pred CCCCCCChhhHHHHHHHHHH
Q 020141 306 NTAFPFRDAEIEKELNELRQ 325 (330)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~ 325 (330)
....+++---++.=+.+|-.
T Consensus 693 ~~~ldl~G~~~~eA~~~l~~ 712 (771)
T TIGR01069 693 SLTLDLRGQRSEEALDRLEK 712 (771)
T ss_pred CceEECCCCCHHHHHHHHHH
Confidence 33444444444444444433
No 234
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=61.61 E-value=1.5e+02 Score=28.25 Aligned_cols=15 Identities=20% Similarity=0.126 Sum_probs=8.9
Q ss_pred ccccccceeeEEecc
Q 020141 39 TSFFNGGVTRLRIAP 53 (330)
Q Consensus 39 ~~~~~~~~~~~~~~~ 53 (330)
.++|+|.|.-+-|..
T Consensus 20 ~~~~~G~V~~i~V~e 34 (327)
T TIGR02971 20 SSGGTDRIKKLLVAE 34 (327)
T ss_pred CCCCCcEEEEEEccC
Confidence 345556676666655
No 235
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.59 E-value=92 Score=25.39 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK---AQLALQKGEEDLAREALKRRKSYADNANALKAQLD 179 (330)
Q Consensus 103 Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~r---A~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle 179 (330)
+.+.-..+...+..+..+......++.++.+...-...++.- +..=..-|. .+.+ .+.++-...++..++
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~------vlv~-~~~~e~~~~l~~r~e 77 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN------LLVK-TDKEEAIQELKEKKE 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch------hhhe-ecHHHHHHHHHHHHH
Confidence 344455566666666667777777777777666555554431 111112222 3333 345556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 180 QQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 180 ~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
..+..+..+..++..++.++.+++.++..+
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777776666554
No 236
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=60.53 E-value=2.6e+02 Score=30.57 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
..+|.|.|-+..++.. ..+...--...++++.+......+.....+-..| .+|-...=..+..-...+..+-..|.
T Consensus 498 a~liqqeV~~ArEqge---aE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~A-r~~lqes~eea~~lR~EL~~QQ~~y~ 573 (739)
T PF07111_consen 498 ARLIQQEVGRAREQGE---AERQQLSEVAQQLEQELQEKQESLAELEEQLEAA-RKSLQESTEEAAELRRELTQQQEVYE 573 (739)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554322 2233333334455666666655555555554444 22222222333333444444444444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 176 AQLD-QQKNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 176 ~qle-~~~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
..++ ........+...+.+++.++.+++++
T Consensus 574 ~alqekvsevEsrl~E~L~~~E~rLNeARRE 604 (739)
T PF07111_consen 574 RALQEKVSEVESRLREQLSEMEKRLNEARRE 604 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 34444556666666666666666544
No 237
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=60.31 E-value=2.6e+02 Score=30.55 Aligned_cols=155 Identities=15% Similarity=0.208 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCCCc
Q 020141 157 AREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV---SEMLGNVNTSS 233 (330)
Q Consensus 157 AreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~---~~~~~~~~~~s 233 (330)
.-.....+...-.....|...+.....++.+++.....+..+|..++.+..-+-.....-...... .--+.+...-+
T Consensus 484 nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e 563 (698)
T KOG0978|consen 484 NFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQE 563 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555555555555544444332222111110 00001111223
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhcc--CCHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCCCCCCCC
Q 020141 234 ALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLET--SSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPF 311 (330)
Q Consensus 234 a~~~feRmEeki~~~EA~aeA~~eL~~~~Ld~k~~~le~--~~vd~eLa~LKa~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (330)
+...++.+..+.+.-++..+-+... ..++...+..... ..+++++.+|+.++.-..+....+.|
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~-~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~------------- 629 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQ-YAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASA------------- 629 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-------------
Confidence 4445555555555555555433221 1122222222221 35899999999998665443332222
Q ss_pred ChhhHHHHHHHHHHh
Q 020141 312 RDAEIEKELNELRQR 326 (330)
Q Consensus 312 ~~~~~~~~~~~~~~~ 326 (330)
|.-+..||.+-|.-
T Consensus 630 -d~~L~EElk~yK~~ 643 (698)
T KOG0978|consen 630 -DEVLAEELKEYKEL 643 (698)
T ss_pred -cHHHHHHHHHHHhc
Confidence 34456666666543
No 238
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=60.13 E-value=2.2e+02 Score=29.74 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 98 ILEQAVLEMNDDLVKMRQATAQVLA 122 (330)
Q Consensus 98 mLeQ~Irdme~~L~kar~~lA~~~A 122 (330)
.++-.|..+...+..+...++.+..
T Consensus 248 ~~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 248 DLNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666665555444
No 239
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.08 E-value=3.3e+02 Score=31.69 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=5.4
Q ss_pred CCCCCCCCC
Q 020141 12 TMPMTPAPS 20 (330)
Q Consensus 12 ~~~~~~~~~ 20 (330)
+||.-|..|
T Consensus 353 ~pP~vPevs 361 (1317)
T KOG0612|consen 353 VPPVVPEVS 361 (1317)
T ss_pred CCCCCCcCC
Confidence 466667663
No 240
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=59.94 E-value=68 Score=25.66 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 234 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa 234 (330)
+.+++..+.+|....+.++.++....+....++.+++-.+...+.+.++.
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~V 74 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDSV 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHHH
Confidence 34445556666666677777777777777777777777776666654443
No 241
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.86 E-value=1.8e+02 Score=28.65 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e 142 (330)
+...||.+.+..++.+-.+.+.-+. +++.++..+.....+|.
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAE-------qLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAE-------QLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 4456666666666666555554433 33444444444444444
No 242
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=59.36 E-value=42 Score=24.60 Aligned_cols=35 Identities=6% Similarity=0.224 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki 199 (330)
.++|+.+..++..+..++.+...++..+.+++..+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555555555555555544
No 243
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=59.27 E-value=1.1e+02 Score=26.04 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSF---EDPEKILEQAVLEMNDDLVKMRQATA 118 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~---EDPe~mLeQ~Irdme~~L~kar~~lA 118 (330)
+|+.+..++..+-..+-+.+ +.-..-++....+.+..+.+++....
T Consensus 28 l~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~ 76 (141)
T PRK08476 28 LYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEAN 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665544333333 33344455555566666666665533
No 244
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=59.01 E-value=1.4e+02 Score=27.17 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 020141 210 KARAQSAKTATKVSEMLGNVNT 231 (330)
Q Consensus 210 kAr~~~AkAq~~~~~~~~~~~~ 231 (330)
......-.+.+..+.++..++.
T Consensus 104 ~~~~ev~~aLk~g~~aLK~~~k 125 (191)
T PTZ00446 104 HLHKIAVNALSYAANTHKKLNN 125 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444433
No 245
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.76 E-value=2.3e+02 Score=29.42 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 020141 120 VLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL---- 195 (330)
Q Consensus 120 ~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~L---- 195 (330)
+.....+++-+..+++ ...++..++..+|.-|..-||+-- ........++..+.++|+........=+..+++.
T Consensus 260 les~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~-~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~ 337 (521)
T KOG1937|consen 260 LESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLM-GKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNL 337 (521)
T ss_pred HHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 3333344444444555 677788899999999999998644 3455666778888888888766554444444332
Q ss_pred -----H-HHHHHHHHHHHHHHHH
Q 020141 196 -----E-SKIQEARSKKDTLKAR 212 (330)
Q Consensus 196 -----e-~Ki~e~k~k~~~LkAr 212 (330)
+ ++|+++...+..+-.+
T Consensus 338 e~e~~e~~~IqeleqdL~a~~ee 360 (521)
T KOG1937|consen 338 ETEDEEIRRIQELEQDLEAVDEE 360 (521)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 2 4555555555444333
No 246
>PRK00846 hypothetical protein; Provisional
Probab=58.76 E-value=85 Score=24.52 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
++.++.|-..+..+...++.|+..++.|..++.++.
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555555555555555555555554443
No 247
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=58.64 E-value=1.6e+02 Score=27.64 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=14.3
Q ss_pred HHhhhccC-CHHHHHHHHHHHcCC
Q 020141 266 KFALLETS-SVDDDLANLKKELSG 288 (330)
Q Consensus 266 k~~~le~~-~vd~eLa~LKa~l~~ 288 (330)
+...++++ .+.+.|..|+..+..
T Consensus 177 R~t~~EKnk~lq~QL~~L~~EL~~ 200 (246)
T PF00769_consen 177 RVTYAEKNKRLQEQLKELKSELEQ 200 (246)
T ss_dssp ---HHHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444455 588899999998854
No 248
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=58.28 E-value=2.1e+02 Score=28.82 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 020141 93 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 172 (330)
Q Consensus 93 EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 172 (330)
+.|.-+|+-.+..+++-...+-..++ |.+++-.+-+.. .-++++..|+.| ..||+--| .++...+
T Consensus 85 ~spl~iL~~mM~qcKnmQe~~~s~La---AaE~khrKli~d---LE~dRe~haqda-aeGDDlt~--------~LEKERe 149 (561)
T KOG1103|consen 85 ESPLDILDKMMAQCKNMQENAASLLA---AAEKKHRKLIKD---LEADREAHAQDA-AEGDDLTA--------HLEKERE 149 (561)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHHhhhh-hccchHHH--------HHHHHHH
Confidence 45778888776666655444433333 233322222223 234555666665 44554332 2355555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
.|++|++=...++.+.+-.-.+|+.++++-+.+-.
T Consensus 150 qL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHe 184 (561)
T KOG1103|consen 150 QLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHE 184 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555555666666655544433
No 249
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.00 E-value=1.9e+02 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=22.6
Q ss_pred CCChhHHHhhhcc--CCHHHHHHHHHHHcC
Q 020141 260 TDDLEGKFALLET--SSVDDDLANLKKELS 287 (330)
Q Consensus 260 ~~~Ld~k~~~le~--~~vd~eLa~LKa~l~ 287 (330)
..+||-++..+.. ..+.+++..||.++.
T Consensus 214 ~g~LDvRLkKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 214 DGSLDVRLKKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999998864 468888899999884
No 250
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.95 E-value=2.8e+02 Score=30.19 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=64.9
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 020141 85 ANAILSSFEDPEKILEQAVLEMNDDLVKMR-QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR 163 (330)
Q Consensus 85 in~~ldk~EDPe~mLeQ~Irdme~~L~kar-~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r 163 (330)
++.+.|.+-.|..-.++.+.++++...+.= +-+..+-..+.++.+.+..+++++..+..........|.
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~---------- 92 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE---------- 92 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc----------
Confidence 566666666776555555656666555443 345555666777899999999999888877766655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 164 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 164 k~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
..+..-..|+.++......++.|+.+..+=...+.++..+++
T Consensus 93 --~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie 134 (660)
T KOG4302|consen 93 --ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE 134 (660)
T ss_pred --cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111255555555555555555444444444444444443
No 251
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=57.85 E-value=1.7e+02 Score=27.55 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHHHHH
Q 020141 71 MNLFDRLARVVKSYANA 87 (330)
Q Consensus 71 Msif~Rl~~lira~in~ 87 (330)
.|-|...|+.|...+..
T Consensus 59 ~gsl~~aw~~~~~e~e~ 75 (258)
T cd07655 59 YGTLETAWKGLLSEAER 75 (258)
T ss_pred CChHHHHHHHHHHHHHH
Confidence 34566666666666555
No 252
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.84 E-value=1.5e+02 Score=29.00 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 156 LAREALKRRKSYADNANALKAQLDQQKNVVNNLV 189 (330)
Q Consensus 156 LAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk 189 (330)
.+.++-..+..++..+......++.+...+..|.
T Consensus 69 ~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~l~ 102 (344)
T PF12777_consen 69 QAKEIEEIKEEAEEELAEAEPALEEAQEALKSLD 102 (344)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445556666677777777777777777776663
No 253
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.47 E-value=86 Score=24.07 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020141 122 ASQKRLENKCKAAEQASEDWYRKAQLALQ 150 (330)
Q Consensus 122 A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 150 (330)
.....+..+..++..+...|..+...-|.
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666777777777665543
No 254
>PRK01156 chromosome segregation protein; Provisional
Probab=57.47 E-value=3e+02 Score=30.39 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
....+..+...+......+..++.++..++.++..++....
T Consensus 686 l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~ 726 (895)
T PRK01156 686 SRKALDDAKANRARLESTIEILRTRINELSDRINDINETLE 726 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444333
No 255
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=57.32 E-value=91 Score=24.36 Aligned_cols=90 Identities=17% Similarity=0.289 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 112 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 191 (330)
Q Consensus 112 kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~ 191 (330)
+++..++.+.......+.++..+......+........ .|- .+.....+...+..+...+..+...+..++..
T Consensus 2 ~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~~------s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 74 (123)
T PF02050_consen 2 QAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QGV------SVAQLRNYQRYISALEQAIQQQQQELERLEQE 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888866666555 333 22333445666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020141 192 TRLLESKIQEARSKKDT 208 (330)
Q Consensus 192 l~~Le~Ki~e~k~k~~~ 208 (330)
+......+.+...+...
T Consensus 75 ~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 75 VEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666655554444
No 256
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=57.01 E-value=1.3e+02 Score=26.88 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 143 (330)
Q Consensus 103 Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~ 143 (330)
+.+++..+.+.+..++.+.-.+-.+..++..+...+.+.+.
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~ 109 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK 109 (194)
T ss_dssp -----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccchhhh
Confidence 33444444444444444444444555555555555544443
No 257
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=56.87 E-value=2e+02 Score=28.14 Aligned_cols=71 Identities=7% Similarity=0.176 Sum_probs=45.3
Q ss_pred CchHHHHHH------HHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 71 MNLFDRLAR------VVKSYANAILSSFED-PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 141 (330)
Q Consensus 71 Msif~Rl~~------lira~in~~ldk~ED-Pe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~ 141 (330)
+.++.+... -|..+++++.+++.+ ...-|.-.|.++++.|...+..+..+...-..++.++..+......+
T Consensus 37 Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~ 114 (301)
T PF06120_consen 37 YYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEK 114 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555544 355556666666553 24556667777777777777777777777777777776666554444
No 258
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=56.59 E-value=1.5e+02 Score=26.46 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 020141 98 ILEQAVLEMNDDLVKMRQATAQV-----LASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 98 mLeQ~Irdme~~L~kar~~lA~~-----~A~~k~le~k~~~~~~~~~~~e 142 (330)
.|--||.+++..+......+..- .-.-.++-.++..+...+..|.
T Consensus 41 ~L~~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~ 90 (173)
T PF07445_consen 41 RLSDYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQS 90 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666666666666665432 2234456666777777766665
No 259
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=56.26 E-value=3.1e+02 Score=30.22 Aligned_cols=118 Identities=11% Similarity=0.098 Sum_probs=85.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Q 020141 92 FEDPEKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 170 (330)
Q Consensus 92 ~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~-~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 170 (330)
+++....++..++|+..=+......+-.+... ...++.++.. .++.-......-++..-+.-+-.+|....+....
T Consensus 171 v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~---~L~~~~~~lg~~i~~~l~~~~~~~L~~i~~l~~~ 247 (806)
T PF05478_consen 171 VDDTPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVSS---DLDNIGSLLGGDIQDQLGSNVYPALDSILDLAQA 247 (806)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHhccchhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44456788888888888888888887777766 4444444333 3333333344444444456677788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
+...+..+......+..|+....+|+..+.+.|+.+......
T Consensus 248 ~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 248 MQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998888887766
No 260
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.23 E-value=1.5e+02 Score=26.66 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 120 VLASQKRLENKCKAAEQASEDWYRKAQLA 148 (330)
Q Consensus 120 ~~A~~k~le~k~~~~~~~~~~~e~rA~~A 148 (330)
....-..++.+..++...+.+|..+....
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555554443
No 261
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=56.06 E-value=1.5e+02 Score=26.33 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
-.+..+.++..|...+..+....+.......+.......+..+..+...-+..|.--. +.....+......+...+
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~----i~~~~~~~~~r~~l~~~~ 88 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFS----IDEYLALRRYRDVLEERV 88 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcc----HHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888888887776666454322 344455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 179 DQQKNVVNNLVSNTRLLESKIQEARSKKDT 208 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 208 (330)
...+.++..+...+.....+|..+.+.+..
T Consensus 89 ~~~e~~~a~l~~~l~~~~~~ia~~~raIar 118 (158)
T PF09486_consen 89 RAAEAELAALRQALRAAEDEIAATRRAIAR 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666776666666666666655554443
No 262
>PRK11281 hypothetical protein; Provisional
Probab=56.04 E-value=3.8e+02 Score=31.05 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 137 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~ 137 (330)
...|++.+.+.++++.+.+..++..-+.--.++.+.++++..
T Consensus 123 l~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 123 LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 355888888888888888888777755544444444444444
No 263
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=55.95 E-value=1.6e+02 Score=26.75 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=55.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHH
Q 020141 91 SFEDPEKILEQAVLEMNDDLVKMRQATA------QVLASQKRLENKCKAAEQASEDWYRK-AQLALQKGEEDLAREALKR 163 (330)
Q Consensus 91 k~EDPe~mLeQ~Irdme~~L~kar~~lA------~~~A~~k~le~k~~~~~~~~~~~e~r-A~~AL~~G~EdLAreAL~r 163 (330)
+..||...+...+-.++..+.++-.... ..|...-.+-- .+++...+.-++ ....-=--++|+|+-| ..
T Consensus 5 K~fDP~qaWKdmy~aTE~~wak~~~q~m~TEEFSa~IG~vLd~yL---~yQKafnE~MekYLe~lNlPSr~DiarvA-~l 80 (189)
T TIGR02132 5 KVFDPFQAWKDAYDKTESFWGKAIGDNIKREEFSALMGNVLDLNL---FYQKALNDTTGNYLEQVNVPTKEDIANVA-SL 80 (189)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCHHHHHHHH-HH
Confidence 4568887777777777777776654422 22221111111 111111111111 1111112346777654 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 164 RKSYADNANALKAQLDQQKNVVN-------NLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 164 k~~~e~~~~~le~qle~~~~~v~-------~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
...+|..+..++.+++..-.... .++..+..++.+|..+..|.+.+
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 66677777777666665332222 34445555555555555544443
No 264
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.93 E-value=2.4e+02 Score=28.69 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=2.5
Q ss_pred HHHHHH
Q 020141 278 DLANLK 283 (330)
Q Consensus 278 eLa~LK 283 (330)
.+..++
T Consensus 368 di~~v~ 373 (457)
T TIGR01000 368 DISGIK 373 (457)
T ss_pred HHhhcC
Confidence 344443
No 265
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=55.85 E-value=1.2e+02 Score=25.32 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 153 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 153 ~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
++.|-.+...++...+..+...+..|......-+. ..|.+-+.||.+.+.++.
T Consensus 61 d~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 61 DEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAELK 113 (115)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666655443 555555556666555543
No 266
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=55.63 E-value=1.9e+02 Score=27.51 Aligned_cols=18 Identities=17% Similarity=-0.027 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020141 125 KRLENKCKAAEQASEDWY 142 (330)
Q Consensus 125 k~le~k~~~~~~~~~~~e 142 (330)
..++.+++.++.+....+
T Consensus 76 ~~~~~~l~~a~a~l~~~~ 93 (334)
T TIGR00998 76 TNAELALAKAEANLAALV 93 (334)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 355555555555544433
No 267
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.44 E-value=3.4e+02 Score=30.31 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 020141 320 LNELRQR 326 (330)
Q Consensus 320 ~~~~~~~ 326 (330)
++.|+.+
T Consensus 483 l~~l~~~ 489 (908)
T COG0419 483 LEELEEE 489 (908)
T ss_pred HHHHHHH
Confidence 3333333
No 268
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.83 E-value=1.2e+02 Score=25.13 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
..+..+...+..|+++.+.....+..|+..|.++...++..|..+..|..|
T Consensus 37 kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r 87 (107)
T PF09304_consen 37 KQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESR 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666666666666666666666666655555444443
No 269
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.43 E-value=2.2e+02 Score=29.79 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
..+.+..+..-+......+.+|...-...-.||+++|+|...|--|
T Consensus 346 Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~R 391 (508)
T KOG3091|consen 346 QDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHR 391 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433333444455555554444433
No 270
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=54.29 E-value=1.8e+02 Score=26.85 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
...+..+....+++...+..+...+..|=.+++.++.-...++.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~ 111 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK 111 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433333
No 271
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=54.13 E-value=2e+02 Score=27.35 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=3.7
Q ss_pred cceeeEEec
Q 020141 44 GGVTRLRIA 52 (330)
Q Consensus 44 ~~~~~~~~~ 52 (330)
|.|.-+-|.
T Consensus 51 G~V~~i~v~ 59 (334)
T TIGR00998 51 GSVIEVNVD 59 (334)
T ss_pred eEEEEEEeC
Confidence 334444443
No 272
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=54.08 E-value=4.9e+02 Score=31.75 Aligned_cols=140 Identities=18% Similarity=0.256 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020141 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 150 (330)
Q Consensus 71 Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 150 (330)
|+++.==..+++........++ .-|.-.|...+.++.-.+..+...-+.-......+.-++....+|..|.+.-+.
T Consensus 1224 vNll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~ 1299 (1822)
T KOG4674|consen 1224 VNLLRESNKVLREENEANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLE 1299 (1822)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555544444443 223333334444444444444444444455555666777788888888887766
Q ss_pred cCc-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 151 KGE-------EDL---AREALKRRKSYADNANALKAQLDQQK----NVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 214 (330)
Q Consensus 151 ~G~-------EdL---AreAL~rk~~~e~~~~~le~qle~~~----~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 214 (330)
+-. +-| ....=.++...+..++.+...+...+ .+++.+......+..++.+++.....|.+...
T Consensus 1300 k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~ 1377 (1822)
T KOG4674|consen 1300 KYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALS 1377 (1822)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 622 111 11111222223333333333333333 44444555555555555555555555544433
No 273
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=53.68 E-value=95 Score=27.12 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
.++++-++.|+..++.+.....++...|.+|..++.....+...+..+...
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777777777776666554443
No 274
>PRK11020 hypothetical protein; Provisional
Probab=53.65 E-value=1.3e+02 Score=25.40 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 127 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 177 (330)
Q Consensus 127 le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~q 177 (330)
+.+++..+....+....+--.|...||.++-.+...++..+..+++.++..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788888888888889999887777666666655555555544
No 275
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=53.63 E-value=2.2e+02 Score=27.86 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQA 116 (330)
Q Consensus 103 Irdme~~L~kar~~ 116 (330)
+..++.++.+++..
T Consensus 101 ~~~~~a~l~~~~~~ 114 (370)
T PRK11578 101 IKEVEATLMELRAQ 114 (370)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 276
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.32 E-value=3.6e+02 Score=30.07 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDDLVKMRQATAQV-------LASQKRLENKCKAAEQ 136 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~L~kar~~lA~~-------~A~~k~le~k~~~~~~ 136 (330)
+-...|++-|.|.+-.+...+..+..+ |+...+++.++.+++.
T Consensus 451 ~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 451 FKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665555555544 3444444444444443
No 277
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=53.13 E-value=1.3e+02 Score=26.04 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 159 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 159 eAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
.++.++..++.++.....+++.++..+.+....+......|++++....
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666555555444444444444444444444444444333
No 278
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.06 E-value=1.9e+02 Score=30.05 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 151 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 151 (330)
.+.|=-.+++++..+..+...=..+.++-.+|+++......++..--+.....+.+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~ 116 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTK 116 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHH
Confidence 34444444444444444444444444444444444444444444444333333333
No 279
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=52.96 E-value=2.2e+02 Score=27.41 Aligned_cols=72 Identities=28% Similarity=0.433 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL 246 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~ 246 (330)
....+..+..++++.+..+..+..+-..|+.||+.-+..++-...|.++-++ +.+ --++.|+++|+...
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~----------vRP-AfmdEyEklE~EL~ 235 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS----------VRP-AFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCh-HHHHHHHHHHHHHH
Confidence 4556667777778888888888888888888888888877766666555432 222 13678888888876
Q ss_pred hHH
Q 020141 247 TME 249 (330)
Q Consensus 247 ~~E 249 (330)
...
T Consensus 236 ~lY 238 (267)
T PF10234_consen 236 KLY 238 (267)
T ss_pred HHH
Confidence 554
No 280
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=52.93 E-value=2.4e+02 Score=27.85 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 020141 95 PEKILEQAVLEMNDDLVKMRQATAQV----LASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYA 168 (330)
Q Consensus 95 Pe~mLeQ~Irdme~~L~kar~~lA~~----~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e 168 (330)
-...|...|.|....+.+++.-++.. +.....-+.++..+...|.+.-++|...=..|+-+-|-.++.+...+.
T Consensus 84 ~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk 161 (319)
T KOG0796|consen 84 ALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELK 161 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 34667777777777777777666655 222222367899999999999999999999999888888865444433
No 281
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=52.56 E-value=2e+02 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 139 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~ 139 (330)
+.-|...|.+++..+..++..+-.+.......-.+....+.++.
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn 77 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVN 77 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554444444444443333333333333
No 282
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=52.29 E-value=1.6e+02 Score=25.69 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 145 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA 145 (330)
.+|+.=-..+.++|..+...-..+.......+.++..++.+..+.-+.|
T Consensus 37 ~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A 85 (167)
T PRK14475 37 GALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAA 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333334444444444443333333
No 283
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=52.26 E-value=2.4e+02 Score=27.68 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP-EKILEQAVLEMN-----------DDLVKMRQATAQVLASQKRLENKCKAAEQASED 140 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP-e~mLeQ~Irdme-----------~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~ 140 (330)
-|+++...|.-.++.+ .-+| ...+.+.|.++. ++.+-++..+--.....+.++...+.++..+.+
T Consensus 164 wm~~~~~~i~nll~~f---~~ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqe 240 (307)
T PF15112_consen 164 WMRDFQMKIQNLLNEF---RNIPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQE 240 (307)
T ss_pred HHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 4566665555555522 2367 355666666666 455556666666677788889999999999998
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 141 WYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 141 ~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
...++..-.-.+.+++ .-+.-...+-..=..|...+...-+.++.|..++.+++..|.+++.+.
T Consensus 241 l~~~~e~~~~~~ee~~--~~l~~~~~fL~~NkDL~~~l~~e~qkL~~l~~k~~~~~~~v~~~~~~~ 304 (307)
T PF15112_consen 241 LYLQAEEQEVLPEEDS--KRLEVLKEFLRNNKDLRSNLQEELQKLDSLQTKHQKLESDVKELKSQM 304 (307)
T ss_pred HHHHHhhccccchhhh--HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHhhc
Confidence 8777766544443322 223333333333344444444444566666666666666666666554
No 284
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=52.22 E-value=2.1e+02 Score=26.87 Aligned_cols=142 Identities=13% Similarity=0.230 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHH------HHHHHHH--HHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ----KGEEDLA------REALKRR--KSYADNAN 172 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~----~G~EdLA------reAL~rk--~~~e~~~~ 172 (330)
.+.....++...+.......+.+...+..+...|...-.++..-=. .-..+|. ...|.+. .++..+..
T Consensus 70 ~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~ 149 (264)
T PF06008_consen 70 KVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQ 149 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 3333334444444444445555555555555555555554433211 0112222 2222222 12333334
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNT-----------RLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKM 241 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l-----------~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRm 241 (330)
.-+.++..+..-....+..+ ..+...|.++..++..+..-.+-|....+-...+... -...|+.+
T Consensus 150 ~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~----n~~~l~~~ 225 (264)
T PF06008_consen 150 NAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRA----NQKNLEDL 225 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 44444444444444443333 3445666666666666666666555544433333222 12345555
Q ss_pred HHHHHhHHH
Q 020141 242 EEKVLTMES 250 (330)
Q Consensus 242 Eeki~~~EA 250 (330)
+.++..+..
T Consensus 226 ~~k~~~l~~ 234 (264)
T PF06008_consen 226 EKKKQELSE 234 (264)
T ss_pred HHHHHHHHH
Confidence 555554443
No 285
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=52.07 E-value=79 Score=29.99 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
.++..+++.++.++..+..+++.+.-++.++..+-.++...++.+.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777788888888888777777777777654
No 286
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=51.84 E-value=3.6e+02 Score=29.62 Aligned_cols=139 Identities=13% Similarity=0.211 Sum_probs=88.9
Q ss_pred chHHHHHHHHH------HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLARVVK------SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 145 (330)
Q Consensus 72 sif~Rl~~lir------a~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA 145 (330)
.|.++|..-++ ...++.|..++.-..-|.+.+++-++--...+..+-+..+..++.+..|...+..++.++.++
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~ 553 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQA 553 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46666654433 333455666666666778888887777777777888888888999999999999999999887
Q ss_pred HHHHhcCc---HHH-----HH--HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 146 QLALQKGE---EDL-----AR--EALKRRKSYADNANALKAQLDQQK----NVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 146 ~~AL~~G~---EdL-----Ar--eAL~rk~~~e~~~~~le~qle~~~----~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
..--...| -|| ++ +|=.+...|..++..|...|...+ ...+.|+..+..|..+++.++++-+.+.
T Consensus 554 ~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 554 LAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64222222 133 11 333444555566666655554433 3345667777777777777766655543
No 287
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=51.71 E-value=1.4e+02 Score=24.64 Aligned_cols=8 Identities=13% Similarity=-0.026 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 020141 127 LENKCKAA 134 (330)
Q Consensus 127 le~k~~~~ 134 (330)
+...+.++
T Consensus 25 l~~~i~e~ 32 (126)
T TIGR00293 25 LRALIAEL 32 (126)
T ss_pred HHHHHHHH
Confidence 33333333
No 288
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=51.67 E-value=1.3e+02 Score=24.55 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQK 182 (330)
Q Consensus 103 Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~ 182 (330)
+..++..|..-+..+...+..-..-+..+...+..+.+--.+-...++.++.-. ..|+.+...-..........+..+.
T Consensus 9 ~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~-~rA~k~a~~e~k~~~~k~~ei~~l~ 87 (126)
T PF13863_consen 9 MFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKR-ERAEKRAEEEKKKKEEKEAEIKKLK 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444444444444444444444445555544433 3455555555666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 183 NVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 183 ~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
..+..|+..+..++.++..++-=.+-|
T Consensus 88 ~~l~~l~~~~~k~e~~l~~~~~Y~~fL 114 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLEEYKKYEEFL 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777765544443
No 289
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=51.58 E-value=1.7e+02 Score=25.60 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 020141 74 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDL 110 (330)
Q Consensus 74 f~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L 110 (330)
.+|=+.+|...+..+.++..+-..-+...|.++...+
T Consensus 73 ~G~gF~vvA~eir~LA~~t~~~~~~I~~~i~~i~~~~ 109 (213)
T PF00015_consen 73 AGRGFAVVADEIRKLAEQTSESAKEISEIIEEIQEQI 109 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhh
Confidence 3444444555555555554444444444444444443
No 290
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.25 E-value=3.2e+02 Score=28.85 Aligned_cols=140 Identities=17% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
..+|.--+-+.++.....|..+-.+..+.--.+-+-...-..+.+..+.+-.++..|.+.|+..-
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt--------------- 225 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKT--------------- 225 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHHh
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSL 255 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~aeA~ 255 (330)
.++..+.....+|..+|..++.|+....-+++.+.+ -|.-+.+...++.++.+
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~-------------------------~Lq~~~da~~ql~aE~~-- 278 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE-------------------------HLQAYKDAQRQLTAELE-- 278 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------------------------HHHHHHhhHHHHHHHHH--
Q ss_pred hcccCCChhHHHhhhcc--CCHHHHHHHHH
Q 020141 256 NQLTTDDLEGKFALLET--SSVDDDLANLK 283 (330)
Q Consensus 256 ~eL~~~~Ld~k~~~le~--~~vd~eLa~LK 283 (330)
.++++.++... ++.+.+|..|+
T Consensus 279 ------EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 279 ------ELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhc
No 291
>PRK11519 tyrosine kinase; Provisional
Probab=51.16 E-value=3.5e+02 Score=29.31 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020141 157 AREALKRRKSYADNANALKA 176 (330)
Q Consensus 157 AreAL~rk~~~e~~~~~le~ 176 (330)
|+..+.....++.++..++.
T Consensus 306 a~~~l~~~~~l~~ql~~l~~ 325 (719)
T PRK11519 306 AKAVLDSMVNIDAQLNELTF 325 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 292
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=51.16 E-value=1.5e+02 Score=24.99 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 128 ENKCKAAEQASEDWYRKAQLALQ----KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 128 e~k~~~~~~~~~~~e~rA~~AL~----~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
.+.++.+-+..-+|..-....+. ...+.+....+.....++-.+..++..++.-....+.+......++..|+.++
T Consensus 15 dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k 94 (139)
T PF05615_consen 15 DRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAK 94 (139)
T ss_pred chhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566544432222 33344555566666666666666666666666666666666667777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 020141 204 SKKDTLKARAQSAKTA 219 (330)
Q Consensus 204 ~k~~~LkAr~~~AkAq 219 (330)
.....|+.....|+..
T Consensus 95 ~~ie~lk~~L~~ak~~ 110 (139)
T PF05615_consen 95 KEIEELKEELEEAKRV 110 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776666665543
No 293
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=51.08 E-value=1.6e+02 Score=25.37 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFED---PEKILEQAVLEMNDDLVKMRQATAQVL 121 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~ED---Pe~mLeQ~Irdme~~L~kar~~lA~~~ 121 (330)
+|+.+..++..+-..+.+.+++ -..-.+....+.+..+.+++......+
T Consensus 43 l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii 94 (156)
T CHL00118 43 LYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEI 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443333333332 233344444444444544444443333
No 294
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=50.99 E-value=2.6e+02 Score=28.90 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 79 RVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 134 (330)
Q Consensus 79 ~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~ 134 (330)
.--+-+++.+...+|. ..-.+|.+.|+++.|.+++..--.+..++..|++++.++
T Consensus 238 k~akehv~km~kdle~-Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea 292 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEG-LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA 292 (575)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh
Confidence 3344556666555553 345789999999999999998888888888888888843
No 295
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.77 E-value=1.8e+02 Score=27.60 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
...+.-+..|.|.++....+|+..++++...+..++++.+.|++-
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888888888888888888887777777654
No 296
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.66 E-value=3.8e+02 Score=29.57 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 95 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLEN 129 (330)
Q Consensus 95 Pe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~ 129 (330)
|..+++.+-.-+.++-.++..-+..+...++.++.
T Consensus 500 p~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~ 534 (782)
T PRK00409 500 PENIIEEAKKLIGEDKEKLNELIASLEELERELEQ 534 (782)
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444433333333333333333333333333333
No 297
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=50.35 E-value=2.2e+02 Score=26.69 Aligned_cols=140 Identities=13% Similarity=0.206 Sum_probs=73.4
Q ss_pred cccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Q 020141 68 NTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKC-------------KAA 134 (330)
Q Consensus 68 ~~~Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~-------------~~~ 134 (330)
|.+-+|+.++..+-.. ..++.+++-..-|.+...+.++.|.+++..+..-...-..+..+| ..+
T Consensus 6 ~lP~~l~~~~~~v~~~---~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l 82 (296)
T PF13949_consen 6 GLPPSLLEKSEEVRSE---GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASL 82 (296)
T ss_dssp S--HHHHHHHHHHHHT---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHH
T ss_pred CCChHHHHHHHHHHhC---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHH
Confidence 3444566666665533 234444444444666666666666666666666666666666665 456
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 020141 135 EQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVV-----------NNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 135 ~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v-----------~~Lk~~l~~Le~Ki~e~k 203 (330)
...+.++......|-..+.. .+.. ...+...+..|..-.+.+...+ ...-..++.+-.++.+++
T Consensus 83 ~~~l~~~~~~L~~A~~sD~~--~~~~---~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~ 157 (296)
T PF13949_consen 83 RKELQKYREYLEQASESDSQ--LRSK---LESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELK 157 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHH--HHHH---HHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHH
Confidence 66666666666665443321 1111 2223333333322222222111 233455666777777888
Q ss_pred HHHHHHHHHHHH
Q 020141 204 SKKDTLKARAQS 215 (330)
Q Consensus 204 ~k~~~LkAr~~~ 215 (330)
.++..+....+.
T Consensus 158 ~eR~~~~~~lk~ 169 (296)
T PF13949_consen 158 KEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887766654
No 298
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=50.22 E-value=1.1e+02 Score=23.06 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 74 FDRLARVVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVL-ASQKRLENKCKAAEQASEDWYRKA 145 (330)
Q Consensus 74 f~Rl~~lira~in~~ldk~EDP----e~mLeQ~Irdme~~L~kar~~lA~~~-A~~k~le~k~~~~~~~~~~~e~rA 145 (330)
|.-+..-|...++.+-....+. ..-++..|.++++-|.++.-.+-.+= +.+..+..++..+..+..++....
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555554332221 35556666666666666665554443 455556667777777766666543
No 299
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.03 E-value=1e+02 Score=22.71 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 020141 213 AQSAKTATKVS 223 (330)
Q Consensus 213 ~~~AkAq~~~~ 223 (330)
..+++|-+++.
T Consensus 38 ~EAaRAN~RlD 48 (56)
T PF04728_consen 38 EEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555444
No 300
>PLN02769 Probable galacturonosyltransferase
Probab=49.98 E-value=1.1e+02 Score=32.76 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 020141 93 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 172 (330)
Q Consensus 93 EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 172 (330)
|.-+.|-|-.++.|+++|.-||.-+..+ |..+.-.+-..++...+.+.+.-.-.| ..+.||=..+..+....+..+.
T Consensus 173 e~~~~~~d~~~~~l~Dql~~Ak~y~~~i-ak~~~~~~l~~el~~~i~e~~~~l~~~--~~d~dlp~~~~~~~~~m~~~~~ 249 (629)
T PLN02769 173 EHKEVMKDSIVKRLKDQLFVARAYYPSI-AKLPGQEKLTRELKQNIQEHERVLSES--ITDADLPPFIQKKLEKMEQTIA 249 (629)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHhh-cccCCcHHHHHHHHHHHHHHHHHHhhc--cccccCChhHHHHHHHHHHHHH
Confidence 4445677888899999999999865332 222222333445555555555444443 4477888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 208 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 208 (330)
..+.........+.+|+.-+..+|.+..-.+.+-..
T Consensus 250 ~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~ 285 (629)
T PLN02769 250 RAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAF 285 (629)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888888888777654444333
No 301
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=49.62 E-value=2.8e+02 Score=27.68 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 020141 134 AEQASEDWYRKAQLA 148 (330)
Q Consensus 134 ~~~~~~~~e~rA~~A 148 (330)
+..-..+|..+..++
T Consensus 129 l~~a~~~~~R~~~L~ 143 (352)
T COG1566 129 LDQAQNELERRAELA 143 (352)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555554
No 302
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=49.11 E-value=3.1e+02 Score=28.06 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 020141 74 FDRLARVVKS 83 (330)
Q Consensus 74 f~Rl~~lira 83 (330)
|+.|..++..
T Consensus 23 ~~Pi~~~l~~ 32 (445)
T PRK13428 23 VPPVRRLMAA 32 (445)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 303
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.03 E-value=88 Score=32.48 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
+++++.++.+++........++..|.+++..++.++.+.+.+.
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444444555554455555555555555555555555554333
No 304
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.94 E-value=80 Score=22.00 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
|.....|+..++.+...-+.|......|...+..+
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 305
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=48.66 E-value=1.1e+02 Score=22.93 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 020141 93 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 172 (330)
Q Consensus 93 EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 172 (330)
.||+=+.+|+ ++++.|..+... .....+..=..+....+..+......++..++-+-|+..+.+..-+..-..
T Consensus 2 ~d~eFLme~m--E~rE~le~~~~~-----~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~ 74 (78)
T PF07743_consen 2 MDPEFLMEQM--ELREELEEAQNS-----DDEAELEELKKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLE 74 (78)
T ss_dssp S-HHHHHHHH--HHHHHHHHHCCC-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 3666555543 566666666321 011233334445555666666667777789999999999988877766554
Q ss_pred HHH
Q 020141 173 ALK 175 (330)
Q Consensus 173 ~le 175 (330)
.++
T Consensus 75 ~ik 77 (78)
T PF07743_consen 75 EIK 77 (78)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 306
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.52 E-value=1.2e+02 Score=26.47 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHhh
Q 020141 233 SALSAFEKMEEKVLTMESQADSLN 256 (330)
Q Consensus 233 sa~~~feRmEeki~~~EA~aeA~~ 256 (330)
.....+..++..+..++.+.+.+.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443
No 307
>PRK14127 cell division protein GpsB; Provisional
Probab=48.25 E-value=64 Score=26.85 Aligned_cols=37 Identities=8% Similarity=0.198 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
+..+-..++.+...+..|+..+..|+.++.+++.+..
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445555555556666666666666666655544
No 308
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.75 E-value=2.9e+02 Score=27.30 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-EDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~-EdLAreAL~rk~~~e~~~~~le 175 (330)
.-|-|.+.+.++........+ ..+.+++.+++.++.-+..+...- +.|+ .--++....++ +.|=
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev-------~~Lrqkl~E~qGD~KlLR~~la~~-r~~~~~~~~~~~~~er-------e~lV 132 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEV-------EELRQKLNEAQGDIKLLREKLARQ-RVGDEGIGARHFPHER-------EDLV 132 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhchHHHHHHHHHhh-hhhhccccccccchHH-------HHHH
Confidence 445566666666655555544 445555555555555554433321 1111 11233333333 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN 230 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~ 230 (330)
.+++.+..+..+|..+++.+-...+++..+++.++-... +....++..++|-.
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~--RLN~ELn~~L~g~~ 185 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH--RLNHELNYILNGDE 185 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCC
Confidence 455666777778888888888888888888888876544 34566777777643
No 309
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=47.53 E-value=1.9e+02 Score=25.16 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=46.6
Q ss_pred chHHHHHH---HHHHHHHHHhhccC----CHH-HH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLAR---VVKSYANAILSSFE----DPE-KI---LEQAVLEMNDDL-VKMRQATAQVLASQKRLENKCKAAEQASE 139 (330)
Q Consensus 72 sif~Rl~~---lira~in~~ldk~E----DPe-~m---LeQ~Irdme~~L-~kar~~lA~~~A~~k~le~k~~~~~~~~~ 139 (330)
.|++||.| +|.|-|+-+|+.+| |-+ .. +...|.++.+.+ .++...... .-..+..++..+...+.
T Consensus 7 ~I~sRLfDHrpvIqgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~---~L~~l~~~l~~a~~~~~ 83 (145)
T PF14942_consen 7 EIHSRLFDHRPVIQGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQ---NLEQLLERLQAANSMCS 83 (145)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 37888865 89999999999999 332 22 223334444332 333333322 23346667777777777
Q ss_pred HHHHHHHHHHh
Q 020141 140 DWYRKAQLALQ 150 (330)
Q Consensus 140 ~~e~rA~~AL~ 150 (330)
.+..+....-.
T Consensus 84 ~l~~~e~~~~~ 94 (145)
T PF14942_consen 84 RLQQKEQEKQK 94 (145)
T ss_pred HHHHHHHHHhh
Confidence 77777776655
No 310
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=47.46 E-value=2.9e+02 Score=27.17 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 214 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 214 (330)
...+-.+-+.+...+...+..-..|...+.+++.|.....+...
T Consensus 250 ~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 250 CKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444445555555555544444433
No 311
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=47.39 E-value=16 Score=26.10 Aligned_cols=15 Identities=60% Similarity=0.911 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHhh
Q 020141 313 DAEIEKELNELRQRA 327 (330)
Q Consensus 313 ~~~~~~~~~~~~~~~ 327 (330)
|.+.|.||++||++-
T Consensus 21 D~~ME~Eieelr~RY 35 (49)
T PF11629_consen 21 DPEMEQEIEELRQRY 35 (49)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 677899999999874
No 312
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=47.36 E-value=2.1e+02 Score=25.69 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=53.8
Q ss_pred CchHHHHHHHHHHHHHHHhhccC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 71 MNLFDRLARVVKSYANAILSSFE--DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 71 Msif~Rl~~lira~in~~ldk~E--DP-e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e 142 (330)
+|+|+.+...|... .-++. || -.-..+++..++..|..+...+..+....+.+-.-+.++-.-...|-
T Consensus 2 ~~~~~~~~~s~~~~----~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la 72 (236)
T PF09325_consen 2 KGLFGKLFDSVSNS----SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLA 72 (236)
T ss_pred hhHHHHHHHHHHcc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888777665 33444 55 36778999999999999999999999998888888888887777665
No 313
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.33 E-value=2e+02 Score=25.37 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Q 020141 107 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 170 (330)
Q Consensus 107 e~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 170 (330)
.+++..+...-..+.......+.++..++.++......+. +.++-+++.+++..+..
T Consensus 47 ~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~-------~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 47 QDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKI-------DSLESEFLIKKKNLEQD 103 (155)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433333 33444454444444443
No 314
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=47.31 E-value=1.7e+02 Score=24.60 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 020141 74 FDRLARVVK 82 (330)
Q Consensus 74 f~Rl~~lir 82 (330)
|+.+..++.
T Consensus 17 ~~pi~~~l~ 25 (147)
T TIGR01144 17 WPPLAKAIE 25 (147)
T ss_pred HHHHHHHHH
Confidence 333333333
No 315
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.17 E-value=2.7e+02 Score=26.79 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 154 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 154 (330)
++.|...|..+..++.+.++.+..+.+.+..|+.+++....+.+.-+.|-.. |++=+-
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s-Lq~vRP 221 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS-LQSVRP 221 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCh
Confidence 6888899999999999999999999999999999999999888887777554 555443
No 316
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.01 E-value=88 Score=25.58 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.+++++.++...++.++.+.+....|+.+++.++...+=.++.|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 4567777778888888777777777777777776654455555553
No 317
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=46.96 E-value=52 Score=31.21 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLARVVKSYANAILSSFEDP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 140 (330)
Q Consensus 72 sif~Rl~~lira~in~~ldk~EDP--e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~ 140 (330)
+||.||+.+=.. --|| +.+|.+.|+.-=+..--+-+.+--.-..-++++.++++++.++..
T Consensus 11 ~lf~RL~~ae~~--------prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 11 DLFSRLKQAEAQ--------PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHhccCC--------CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477777753211 3377 578887777766666666555554444555555555555555443
No 318
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=46.96 E-value=4e+02 Score=28.70 Aligned_cols=45 Identities=9% Similarity=0.210 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 95 PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 139 (330)
Q Consensus 95 Pe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~ 139 (330)
-..++.|.++.|.+.+..++...-..+.....|++++..+..++.
T Consensus 23 e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 23 ESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888888888887777777777776667777666665554
No 319
>PLN02939 transferase, transferring glycosyl groups
Probab=46.64 E-value=4.9e+02 Score=29.67 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKR-LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 174 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~-le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l 174 (330)
...|+-++++++..+..+...+..+...+.. +=.+++.++...+....++ +-|--.|.+-+++.+++..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 336 (977)
T PLN02939 266 RSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQV---------EKAALVLDQNQDLRDKVDKL 336 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhccchHHHHHHHHH
Confidence 3677888888888887777777766554322 2223333333333333333 33344455556666666666
Q ss_pred HHHHHHH
Q 020141 175 KAQLDQQ 181 (330)
Q Consensus 175 e~qle~~ 181 (330)
+..++..
T Consensus 337 ~~~~~~~ 343 (977)
T PLN02939 337 EASLKEA 343 (977)
T ss_pred HHHHHHh
Confidence 6666543
No 320
>PRK07737 fliD flagellar capping protein; Validated
Probab=46.53 E-value=1.6e+02 Score=30.70 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVS 190 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~ 190 (330)
..+...|+..+.++..+-.-|..
T Consensus 472 ~~qf~ale~~~s~mnsq~s~L~~ 494 (501)
T PRK07737 472 YKKFSAMEKAIQKANEQSMYLMN 494 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555544444433
No 321
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=46.18 E-value=3.9e+02 Score=28.29 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLARE 159 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAre 159 (330)
+.++++.|+-.+-+++-++..+..+-+.++.+++++-++..-++ -++.|+..|.-+||-.
T Consensus 599 i~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQ----gakKAVhdaK~ElA~~ 658 (790)
T PF07794_consen 599 IGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQ----GAKKAVHDAKVELAAA 658 (790)
T ss_pred hhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHH
Confidence 35677777777777777777776665555555555554443332 3344666676677643
No 322
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=46.05 E-value=4.8e+02 Score=29.32 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 020141 138 SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 173 (330)
Q Consensus 138 ~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 173 (330)
.++.-++.+...+.|+-+-|+++|.+....-+.+..
T Consensus 570 Lq~Mmd~ieela~~G~~~~A~qlL~qlq~mmenlq~ 605 (851)
T TIGR02302 570 LQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQM 605 (851)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 555666777777888888888888776665555543
No 323
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=46.00 E-value=1.3e+02 Score=22.77 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 219 (330)
Q Consensus 172 ~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq 219 (330)
..|+..++++=....+|+..-..|..++......+..|+.+...|+.+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666666666666776666666655443
No 324
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=45.70 E-value=2.4e+02 Score=25.73 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=31.5
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 94 DP-EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 94 DP-e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.| ..+|++-=....+.+..+......+.......+.++.+++.++...-+.|..
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~ 125 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANY 125 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 3566666666666666666666655555555555555555555555544443
No 325
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=45.27 E-value=4.7e+02 Score=29.03 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 214 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 214 (330)
..+...+..+...++.....+..|...|..|+..+.+-..+...++.|..
T Consensus 374 ~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 374 SRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455555555555555555555555555444444444444443
No 326
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=45.25 E-value=3.6e+02 Score=27.64 Aligned_cols=50 Identities=8% Similarity=0.148 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 146 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~ 146 (330)
.+|++--..+.++|.+++..-..+...+...+.++.+++.+..+.-+.|+
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~ 77 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAR 77 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444433333333333333334443333333333333
No 327
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=45.19 E-value=2.9e+02 Score=26.66 Aligned_cols=6 Identities=50% Similarity=0.977 Sum_probs=2.5
Q ss_pred HHHHHH
Q 020141 278 DLANLK 283 (330)
Q Consensus 278 eLa~LK 283 (330)
.+..++
T Consensus 255 ~~~~v~ 260 (346)
T PRK10476 255 DLKNIR 260 (346)
T ss_pred HHhhCC
Confidence 344443
No 328
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.10 E-value=3.2e+02 Score=27.74 Aligned_cols=6 Identities=50% Similarity=0.894 Sum_probs=2.3
Q ss_pred HHHHHH
Q 020141 318 KELNEL 323 (330)
Q Consensus 318 ~~~~~~ 323 (330)
.+++++
T Consensus 298 ~~~~~~ 303 (418)
T TIGR00414 298 EELEEM 303 (418)
T ss_pred HHHHHH
Confidence 333333
No 329
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.02 E-value=4.2e+02 Score=28.34 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 160 ALKRRKSYADNANALKAQLDQQKNVVNNL 188 (330)
Q Consensus 160 AL~rk~~~e~~~~~le~qle~~~~~v~~L 188 (330)
.+.++..++.++..++.++.+....+.++
T Consensus 260 ~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 260 LFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666555555443
No 330
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.76 E-value=1.5e+02 Score=23.00 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
.+++.+..|+-.+.-+++.++.|...+.+...-+..++.+++.|.-+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~k 51 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEK 51 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666655544
No 331
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.67 E-value=4.6e+02 Score=28.75 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=14.5
Q ss_pred CCCChhhHHHHHHHHHHhhh
Q 020141 309 FPFRDAEIEKELNELRQRAK 328 (330)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ 328 (330)
.|-...++..||.+||..-+
T Consensus 469 ~pp~~~dL~~ELqqLReERd 488 (739)
T PF07111_consen 469 SPPSVTDLSLELQQLREERD 488 (739)
T ss_pred CCCchhhHHHHHHHHHHHHH
Confidence 34456778999999987643
No 332
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.49 E-value=98 Score=24.27 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
..-...++...+.....+..++..+..++.++.+++.++.
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555666666666666666666666655443
No 333
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=44.21 E-value=3.1e+02 Score=26.70 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKME 242 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmE 242 (330)
.|.+..+.+..|+..+.+....+..-..-=++|.-=.+|+-++-+++-.....+.-...+= ....-+|.|+
T Consensus 213 ~K~DI~EEldRL~sHv~~~~~iL~~~g~vGRkLDFl~QE~nREaNTl~SKS~~~~it~~~v---------ElK~~IEqmR 283 (290)
T COG1561 213 QKADIAEELDRLKSHVKEFRNILEKGGPVGRKLDFLMQEFNREANTLGSKSNAAEITAAVV---------ELKVLIEQMR 283 (290)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhHHHHhhhhccchHHHHHHHH---------HHHHHHHHHH
Confidence 3444444444444444443333322222225677777888888887766655543332111 2345778888
Q ss_pred HHHHh
Q 020141 243 EKVLT 247 (330)
Q Consensus 243 eki~~ 247 (330)
|+|..
T Consensus 284 EQVQN 288 (290)
T COG1561 284 EQVQN 288 (290)
T ss_pred HHHhc
Confidence 88764
No 334
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.85 E-value=6.4 Score=42.51 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
..+..++..++..+.......+.++..+..++..+.+++.+.+.|.+.++.
T Consensus 242 ~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~ 292 (713)
T PF05622_consen 242 ADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEARE 292 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554445555555555555555555555555444333
No 335
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=43.53 E-value=2.4e+02 Score=25.16 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
+...+.|+.+|.+.+..|..|+.-|..-+....++|+++.
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLG 67 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLG 67 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 3445667777777777777777777777777777777754
No 336
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=43.49 E-value=2e+02 Score=25.63 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
.++.++..+...+..|...+..|+.++..++....+|..-...
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333
No 337
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=43.33 E-value=3.2e+02 Score=26.50 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------------HHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE-----------------EDLARE 159 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~-----------------EdLAre 159 (330)
..+.+.+.++-+.+.++|..-...+. .-+..++..++..+.+.+.++-..+..-+ +-|+.+
T Consensus 131 ~~l~~al~~AL~~l~~mR~~EG~~L~--~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~qE 208 (291)
T TIGR00255 131 ALILGALEEALLDFINMREFEGENLK--SDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQE 208 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 56777777788888888877554432 23334444444433333333222222222 224443
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHH
Q 020141 160 A--LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSA 237 (330)
Q Consensus 160 A--L~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~ 237 (330)
+ +..|.+..+.+..|...++++...+..=..-=++|.-=++|+-++.+++-+..+.+....-+ =.....
T Consensus 209 val~adK~DI~EEl~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEmnRE~NTigSKs~d~~is~~v---------Ve~K~e 279 (291)
T TIGR00255 209 AALLAQRIDIAEEIDRLDSHVKEFYNILKKGEAVGRKLDFMMQELNRESNTLASKAIDADITNLA---------VEMKVL 279 (291)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHhHHHHHHHHccCcHHHHHHH---------HHHHHH
Confidence 3 23444444444444444444444443321112356666777777777776665554332211 134568
Q ss_pred HHHHHHHHHh
Q 020141 238 FEKMEEKVLT 247 (330)
Q Consensus 238 feRmEeki~~ 247 (330)
+++|+|+|..
T Consensus 280 iEkiREQVQN 289 (291)
T TIGR00255 280 IEKIKEQIQN 289 (291)
T ss_pred HHHHHHHHhc
Confidence 8999988764
No 338
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.21 E-value=1e+02 Score=25.19 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 204 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~ 204 (330)
.++.+++.++...++++.....|+.+|..+++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444444444444444444444444444444
No 339
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.19 E-value=4.3e+02 Score=28.03 Aligned_cols=78 Identities=12% Similarity=0.188 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHhhccCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFED--------PEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~ED--------Pe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
||.-+.+-+=+.++++=+...| |..-||-.+..+.+++.+....+.+.- -...+..+..++.+++.+++.
T Consensus 219 L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~Le--ld~aeeel~~I~e~ie~lYd~ 296 (570)
T COG4477 219 LLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQLE--LDEAEEELGLIQEKIESLYDL 296 (570)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHhh--hhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333222 345566667777777776665555442 234455666666777766665
Q ss_pred HHHHHhcC
Q 020141 145 AQLALQKG 152 (330)
Q Consensus 145 A~~AL~~G 152 (330)
-..=+.++
T Consensus 297 lE~EveA~ 304 (570)
T COG4477 297 LEREVEAK 304 (570)
T ss_pred HHHHHHHH
Confidence 55444333
No 340
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.70 E-value=2.7e+02 Score=25.56 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQ 119 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~ 119 (330)
+..|.-.+.+++..|.++......
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888999888888887765
No 341
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=42.35 E-value=2.2e+02 Score=24.31 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 214 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 214 (330)
.|....++.+..+...+......+..|...-.....+|++++++-..|.-|.-
T Consensus 37 ~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l 89 (141)
T PF13874_consen 37 KRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLL 89 (141)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777766666777788888888877776643
No 342
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=41.92 E-value=3.1e+02 Score=25.90 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLAS----QKRLENKCKAAEQASEDWYRKAQL 147 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~----~k~le~k~~~~~~~~~~~e~rA~~ 147 (330)
.+++..|-.+++.+...++.+++.--. .+++..++.......-+|+.+++.
T Consensus 93 ~L~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rK 147 (231)
T cd07643 93 ALMDCLVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARK 147 (231)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 455666666677777776666554333 455566666666666677777766
No 343
>PRK15396 murein lipoprotein; Provisional
Probab=41.86 E-value=1.7e+02 Score=22.91 Aligned_cols=8 Identities=13% Similarity=0.459 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 020141 215 SAKTATKV 222 (330)
Q Consensus 215 ~AkAq~~~ 222 (330)
+++|-+++
T Consensus 62 A~raN~Rl 69 (78)
T PRK15396 62 AARANQRL 69 (78)
T ss_pred HHHHHHHH
Confidence 33333333
No 344
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.71 E-value=2.9e+02 Score=25.64 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 208 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 208 (330)
.+..+++.++...++++..++..+..+..|+.+|++...-+..
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433333
No 345
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=41.56 E-value=2.3e+02 Score=24.44 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 149 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL 149 (330)
+|+.+..++..+-+.+-+.+++. ..-.+....+.+..+.+++.....++...+.-..+. .+..+.+-...+..=+
T Consensus 29 l~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~--~~~~l~~A~~ea~~~~ 106 (164)
T PRK14473 29 LYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQ--EAEIIAQARREAEKIK 106 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 150 QKGEEDLAREALKRRKSYADNANALKAQLDQ 180 (330)
Q Consensus 150 ~~G~EdLAreAL~rk~~~e~~~~~le~qle~ 180 (330)
..++.++..+--.-..++..++..+--....
T Consensus 107 ~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~ 137 (164)
T PRK14473 107 EEARAQAEQERQRMLSELKSQIADLVTLTAS 137 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 346
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.44 E-value=1.5e+02 Score=25.62 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 188 LVSNTRLLESKIQEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 188 Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 218 (330)
|..++..|...+..++.+++.++.+...+..
T Consensus 86 L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455556666777777776666543
No 347
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.39 E-value=6e+02 Score=29.18 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR 163 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r 163 (330)
+-+.-.|.+|++-+..+...+.....+-+.++.+++++..+.+.-..-...+|...-..+.......
T Consensus 247 ~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~ 313 (1174)
T KOG0933|consen 247 KNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITRE 313 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666666666666665555544444455554444444444333
No 348
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=40.99 E-value=6e+02 Score=29.07 Aligned_cols=133 Identities=16% Similarity=0.205 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDD-LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE----EDLAREALKRRKSYA 168 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~-L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~----EdLAreAL~rk~~~e 168 (330)
+|+.+|...++-.... |...-..+-......+++++..+.-...+..+++.... +.+.= +-....-..+.....
T Consensus 159 ~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~-l~kdVE~~rer~~~~~~Ie~l~~k 237 (1072)
T KOG0979|consen 159 SPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDK-LEKDVERVRERERKKSKIELLEKK 237 (1072)
T ss_pred ChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999888888877 88888888888999999998888877777777665543 22222 222211111111000
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020141 169 D---NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNV 229 (330)
Q Consensus 169 ~---~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~ 229 (330)
. ....+...+.......+.++.+++.+...+.....++..|.. +...+..++......+
T Consensus 238 ~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~--~~~et~~~~s~~~~~~ 299 (1072)
T KOG0979|consen 238 KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES--EKKETRSKISQKQREL 299 (1072)
T ss_pred ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh--HHHhHHHHHHHHHHHH
Confidence 0 134556788889999999999999999999999999999987 4555555555544443
No 349
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=40.92 E-value=3.6e+02 Score=26.39 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e 142 (330)
.+|++.+.|.++..-.-.+|-..-+|.+.-..+.-+++-+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lk 118 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLK 118 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 34444555555555555555555555444444444444433
No 350
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.90 E-value=2.2e+02 Score=23.93 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
+..+..+..++.++...+..|...+..++..+.+++.-++.+.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777666665
No 351
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=40.74 E-value=2.5e+02 Score=24.59 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVL----------------ASQKRLENKCKA 133 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~----------------A~~k~le~k~~~ 133 (330)
+|+.+..++..+-..+.+.+++- ..-.++.+.+.+..+.+++.....++ ..+...++.++.
T Consensus 39 l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~ 118 (175)
T PRK14472 39 AWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIAS 118 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 134 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNN 187 (330)
Q Consensus 134 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~ 187 (330)
.+..+..-.++|...++..=-++|-....+...-.-.......-++..-..++.
T Consensus 119 a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~li~~~i~~l~~ 172 (175)
T PRK14472 119 AKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRTSLDADKQKKVVDSMIQDLST 172 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhh
No 352
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.41 E-value=2.8e+02 Score=25.01 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=7.1
Q ss_pred HHHHHHHHHHH
Q 020141 77 LARVVKSYANA 87 (330)
Q Consensus 77 l~~lira~in~ 87 (330)
|++++.+-+++
T Consensus 32 VKdvlq~LvDD 42 (188)
T PF03962_consen 32 VKDVLQSLVDD 42 (188)
T ss_pred HHHHHHHHhcc
Confidence 56777666664
No 353
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.10 E-value=1.4e+02 Score=23.10 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
-.++.++.|-..+.++...++++..+++-|-.|+..+.
T Consensus 19 fQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 19 FQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34666777777778888888888888887777776653
No 354
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.09 E-value=4.4e+02 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE 154 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 154 (330)
..+|-++.++...+.........-...-++++..+.++....-+...+=..++..+++
T Consensus 148 ~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~ 205 (446)
T KOG4438|consen 148 KQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNK 205 (446)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666667777778888887777777777777777666654
No 355
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=39.26 E-value=3.2e+02 Score=25.34 Aligned_cols=15 Identities=53% Similarity=0.722 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHcCC
Q 020141 274 SVDDDLANLKKELSG 288 (330)
Q Consensus 274 ~vd~eLa~LKa~l~~ 288 (330)
.++..|+.|...+.+
T Consensus 194 ~~~~~l~e~e~~~s~ 208 (212)
T COG3599 194 YVDTKLAELETRLSG 208 (212)
T ss_pred HHHHHHHHHHHHHhh
Confidence 478888888877654
No 356
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=39.11 E-value=3.7e+02 Score=26.12 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 020141 101 QAVLEMNDDLVKMRQA 116 (330)
Q Consensus 101 Q~Irdme~~L~kar~~ 116 (330)
|-|.+++.++.+++..
T Consensus 18 qKIqelE~QldkLkKE 33 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKE 33 (307)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777777665
No 357
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.09 E-value=3.3e+02 Score=27.64 Aligned_cols=33 Identities=9% Similarity=0.154 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020141 119 QVLASQKRLENKCKAAEQASEDWYRKAQLALQK 151 (330)
Q Consensus 119 ~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 151 (330)
.+-..++.+..+++.++.+..........+...
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~ 64 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRK 64 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445555566666666666665555443333
No 358
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=38.87 E-value=1.7e+02 Score=23.03 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 134 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 176 (330)
Q Consensus 134 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ 176 (330)
+++-+++|..-|..|+..||--+|.-.++-..+|-..+...+.
T Consensus 35 A~ql~EKY~~LArDA~ssGDrV~aEny~QHAeHY~Ril~~~~~ 77 (80)
T PF13763_consen 35 AQQLIEKYNQLARDAQSSGDRVLAENYLQHAEHYFRILAAAQA 77 (80)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999998887777776665544
No 359
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=38.87 E-value=3.2e+02 Score=26.82 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 119 QVLASQKRLENKCKAAEQASEDWYRKAQ 146 (330)
Q Consensus 119 ~~~A~~k~le~k~~~~~~~~~~~e~rA~ 146 (330)
.-+..+-..--.|......+.=......
T Consensus 197 ~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~ 224 (344)
T PF12777_consen 197 GSLCKWVRAMVKYYEVNKEVEPKRQKLE 224 (344)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344444444555555544444443333
No 360
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=38.57 E-value=3.5e+02 Score=25.57 Aligned_cols=102 Identities=22% Similarity=0.311 Sum_probs=64.2
Q ss_pred CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Q 020141 93 EDP--EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADN 170 (330)
Q Consensus 93 EDP--e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~ 170 (330)
-|| ..||++.+... .++.......-....+.-+.|..++..+..++..-..++.+-+ -|-+.
T Consensus 115 ~D~~wqEmLn~A~~kV----neAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSr------------PYfe~ 178 (239)
T PF05276_consen 115 FDPAWQEMLNHATQKV----NEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSR------------PYFEL 178 (239)
T ss_pred ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHH
Confidence 477 47888776554 3444555555556666777788888888888777776666433 33334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
-..+...++.++..|..|...+...+..|...-..++.+-
T Consensus 179 K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 179 KAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666666666666655555544
No 361
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.49 E-value=2.7e+02 Score=24.32 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHc
Q 020141 274 SVDDDLANLKKEL 286 (330)
Q Consensus 274 ~vd~eLa~LKa~l 286 (330)
.+++.|..||..-
T Consensus 120 Gldeqi~~lkes~ 132 (155)
T PF06810_consen 120 GLDEQIKALKESD 132 (155)
T ss_pred cHHHHHHHHHhcC
Confidence 5899999999754
No 362
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.33 E-value=3.5e+02 Score=25.61 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q 020141 101 QAVL------EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 174 (330)
Q Consensus 101 Q~Ir------dme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l 174 (330)
+.++ ||++.+..++.-+-.....+..+-.++.+++.+.+...+ +.+.++.....|
T Consensus 122 ktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~e-------------------rlk~le~E~s~L 182 (290)
T COG4026 122 KTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQE-------------------RLKRLEVENSRL 182 (290)
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 175 KAQLDQQKNVVNNLVSNTRLLESKIQ 200 (330)
Q Consensus 175 e~qle~~~~~v~~Lk~~l~~Le~Ki~ 200 (330)
+..+...-..+..|+..+.+|+.+++
T Consensus 183 eE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 183 EEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHhchhHHHHHHHHHHHhccccc
No 363
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.30 E-value=1.1e+02 Score=29.03 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 152 GEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 152 G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
++..+---.-.++-.+.....+|+.++..+...+..|+..+..|+..=-.+.-|..-|.
T Consensus 76 ~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 76 GDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666777777788888888888888888777777777766555555555543
No 364
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=38.21 E-value=6.9e+02 Score=28.96 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQ 119 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~ 119 (330)
.-|+|.+.....++..++..++.
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~ 127 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQ 127 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 365
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=38.18 E-value=2.6e+02 Score=24.01 Aligned_cols=50 Identities=10% Similarity=0.186 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 146 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~ 146 (330)
.+|+.-=..+..++..+......+.......+.++.+++.++...-+.|.
T Consensus 32 ~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~ 81 (159)
T PRK13461 32 AVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYK 81 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555444444444444444455554444444444443
No 366
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.56 E-value=6.2e+02 Score=28.22 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 020141 237 AFEKMEEKVL 246 (330)
Q Consensus 237 ~feRmEeki~ 246 (330)
.++++++++.
T Consensus 482 el~~l~~~i~ 491 (908)
T COG0419 482 ELEELEEELS 491 (908)
T ss_pred HHHHHHHHHH
Confidence 4455555555
No 367
>PRK12472 hypothetical protein; Provisional
Probab=37.53 E-value=5.1e+02 Score=27.20 Aligned_cols=99 Identities=22% Similarity=0.198 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 107 NDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG--EEDLAREALKRRKSYADNANALKAQLDQQKNV 184 (330)
Q Consensus 107 e~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G--~EdLAreAL~rk~~~e~~~~~le~qle~~~~~ 184 (330)
+....+..+.++.+.+.-..+|+.......+... |..+|..- ++.-+ .+..+++..+.++.....+++..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~----adk~l~~a~~d~~~~-~a~~~~~~~~~~~~~a~~~~~~a~~~ 284 (508)
T PRK12472 210 KTAAAAAAREAAPLKASLRKLERAKARADAELKR----ADKALAAAKTDEAKA-RAEERQQKAAQQAAEAATQLDTAKAD 284 (508)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444455555555555554444433 33333332 33333 44568888899999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
.+.-.......+.....+..++....
T Consensus 285 ~~~~~~~~~~~~~a~~~a~~~~~~~~ 310 (508)
T PRK12472 285 AEAKRAAAAATKEAAKAAAAKKAETA 310 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 87777777666666666666665543
No 368
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=37.45 E-value=4.5e+02 Score=26.56 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020141 117 TAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ 150 (330)
Q Consensus 117 lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~ 150 (330)
+..+......++..+..+-.....+.++-..|+.
T Consensus 194 ~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~ 227 (412)
T PF04108_consen 194 MSTILKELHSLEQEMASLLESLTNHFDQCVTAVR 227 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788999999999999999999999998
No 369
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=37.26 E-value=3.7e+02 Score=26.20 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCK 132 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~ 132 (330)
+.+.++.+++..+.++.+...+.+.+++
T Consensus 96 ~~~~~~~~~~a~l~~~~~~l~~a~~~l~ 123 (370)
T PRK11578 96 QAENQIKEVEATLMELRAQRQQAEAELK 123 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555444444333333333
No 370
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=37.14 E-value=3.6e+02 Score=25.36 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP-EKILEQAVLEMND 108 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP-e~mLeQ~Irdme~ 108 (330)
...||..+-......+-..+-+| ...|+..|.++..
T Consensus 89 a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k 125 (244)
T cd07595 89 AQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQK 125 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666677 3566655444433
No 371
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.97 E-value=3.1e+02 Score=28.20 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 122 ASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 179 (330)
Q Consensus 122 A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle 179 (330)
...+.+..+.+.++.+.....+....++.+|.+ -+-..+.+...+.+++..++..+.
T Consensus 36 ~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-~~~~l~~e~~~l~~~l~~~e~~~~ 92 (429)
T COG0172 36 EERRKLLRELEELQAERNELSKEIGRALKRGED-DAEELIAEVKELKEKLKELEAALD 92 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhccHHHH
Confidence 344445555555555555565665566777665 344444444444444443333333
No 372
>PF14282 FlxA: FlxA-like protein
Probab=36.80 E-value=2.3e+02 Score=23.05 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 020141 195 LESKIQEARSKK 206 (330)
Q Consensus 195 Le~Ki~e~k~k~ 206 (330)
|..+|..+..++
T Consensus 56 Lq~QI~~LqaQI 67 (106)
T PF14282_consen 56 LQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 373
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=36.73 E-value=3.3e+02 Score=24.80 Aligned_cols=19 Identities=5% Similarity=-0.052 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQAT 117 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~l 117 (330)
.++.+.+++..+.+++...
T Consensus 98 A~~~l~e~e~~L~~A~~eA 116 (205)
T PRK06231 98 AQQLLENAKQRHENALAQA 116 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 374
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.71 E-value=1.7e+02 Score=21.33 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki 199 (330)
.....++..+..|+...+.+...+..|+..+..|...+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 375
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=36.45 E-value=2.1e+02 Score=29.41 Aligned_cols=54 Identities=7% Similarity=0.064 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 123 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 191 (330)
Q Consensus 123 ~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~ 191 (330)
....+..++..+..+++.|+.|... +...|..+...++..+.++..+-.-|..+
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~---------------~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDA---------------TIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345666666666666666666554 12234556666666666666665555443
No 376
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.45 E-value=3.1e+02 Score=24.43 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
....++.+....+....+|...+..|+.++..+..+..++.
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555554444444
No 377
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=36.31 E-value=2.2e+02 Score=22.60 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 020141 101 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSY 167 (330)
Q Consensus 101 Q~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~ 167 (330)
+.|.+.+..|..++..-+...+ -.. -..+.+.-.+|+.++..|+.+-|+..+..-...
T Consensus 17 ~~l~~A~~ai~~A~~~~a~~~A-----p~e----l~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 17 EELSDAEAAIQRAEAAGAEQYA-----PVE----LKEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCcccc-----HHH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444566666666555222211 112 233444455678888889988777665544443
No 378
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.13 E-value=85 Score=34.01 Aligned_cols=233 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH-
Q 020141 83 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL- 161 (330)
Q Consensus 83 a~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL- 161 (330)
|.+..-+...+.-..-|...+..+...+.+++..+........+++++..=+.++++-+......-=.-....-.-...
T Consensus 360 g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~ 439 (722)
T PF05557_consen 360 GSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDT 439 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCCCCCcHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT-----ATKVSEMLGNVNTSSALS 236 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA-----q~~~~~~~~~~~~~sa~~ 236 (330)
.+....++.+..++.........+..+...+...+............++.+...... ...++..-.. ..+.-.
T Consensus 440 ~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~--~~~Le~ 517 (722)
T PF05557_consen 440 QRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKE--IEELER 517 (722)
T ss_dssp ------------------------------------------------------HHCCCCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHH--HHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHhh---ccc---------CCChhHHHhhhcc---CCHHHHHHHHHHHc----CCCCCCCCCCC
Q 020141 237 AFEKMEEKVLTMESQADSLN---QLT---------TDDLEGKFALLET---SSVDDDLANLKKEL----SGSSKKGELPP 297 (330)
Q Consensus 237 ~feRmEeki~~~EA~aeA~~---eL~---------~~~Ld~k~~~le~---~~vd~eLa~LKa~l----~~~~~~~~~~~ 297 (330)
..++++.++..++.+.+-.. ... .++...+...... .....|-+.|++.+ .+++.+..+.|
T Consensus 518 e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p 597 (722)
T PF05557_consen 518 ENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVP 597 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT--------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q ss_pred CCCcCCCCCCCCCCChhhHHHHHHHHHHhhhc
Q 020141 298 GRAAASSTNTAFPFRDAEIEKELNELRQRAKD 329 (330)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (330)
...- ...+.|+.+|+.++..
T Consensus 598 ~~~~------------~~~~~e~~~l~~~~~~ 617 (722)
T PF05557_consen 598 TSSL------------ESQEKEIAELKAELAS 617 (722)
T ss_dssp --------------------HHHHHHHHHHHH
T ss_pred chhh------------hhhHHHHHHHHHHHHH
No 379
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=36.11 E-value=2.9e+02 Score=23.88 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 145 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA 145 (330)
.+|+.-=..+.+++..++..-..+.......+.++..++.+....-..|
T Consensus 35 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A 83 (164)
T PRK14471 35 GAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEA 83 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433333
No 380
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=36.11 E-value=3.5e+02 Score=24.84 Aligned_cols=124 Identities=8% Similarity=0.105 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020141 73 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 152 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 152 (330)
++.++..+..-..+.-...+.+| |+.|+|.+. ++-.++..+..+-..|..+...+.+...+...-...|
T Consensus 78 ~~~ki~~~~~~qa~~d~~~l~e~---L~eY~r~i~--------svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~ 146 (224)
T cd07623 78 VEEKIEQLHGEQADTDFYILAEL---LKDYIGLIG--------AIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSG 146 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555554444444444443 444444432 3334444555566666666666666666544445567
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 020141 153 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL-ESKIQEARSKKDTLK 210 (330)
Q Consensus 153 ~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~L-e~Ki~e~k~k~~~Lk 210 (330)
+.|-.-.+-.+....+..+...+..++.. ...++..+..+ ..++.+++.-...+.
T Consensus 147 ~~~K~~~~~~ev~~~e~~~~~a~~~fe~i---s~~~k~El~rF~~erv~dfk~~l~~~l 202 (224)
T cd07623 147 RTDKLDQAQQEIKEWEAKVDRGQKEFEEI---SKTIKKEIERFEKNRVKDFKDIIIKYL 202 (224)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544444444444444444444433332 22333344443 445555555555443
No 381
>PRK08453 fliD flagellar capping protein; Validated
Probab=35.93 E-value=2e+02 Score=31.29 Aligned_cols=69 Identities=9% Similarity=0.121 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 143 (330)
Q Consensus 72 sif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~ 143 (330)
|||.||..++...+...-..+..-..-|...+..+++++.+....+ ...+.++..++.+++..+.++..
T Consensus 599 Gi~~rl~~~L~~~i~g~~G~l~~~~~sL~~q~k~L~~q~~~~e~rL---~~ry~rl~~qFsAmDs~IsqmNs 667 (673)
T PRK08453 599 GIFSKFNQVIANLIDGGNAKLKIYEDSLTRDAKSLTKDKENAQELL---KTRYDIMAERFAAYDSQISKANQ 667 (673)
T ss_pred cHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777666542111222233345555555555555554333 23334455555555555555443
No 382
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=35.89 E-value=2.9e+02 Score=23.93 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 020141 130 KCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNN--LVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 130 k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~--Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
+++.+...+.+..+-.....+-++-++ -++-.|...+..++..+..+-+..-+ .-.++.++...+.++..+++
T Consensus 67 e~e~L~~~L~~g~~LV~k~sk~~r~n~-----~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~ 141 (147)
T PF05659_consen 67 EIERLKELLEKGKELVEKCSKVRRWNL-----YKKPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLD 141 (147)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHH-----HhhHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444332 24556777777777777665443222 23455566666666666665
Q ss_pred HH
Q 020141 208 TL 209 (330)
Q Consensus 208 ~L 209 (330)
.+
T Consensus 142 ~i 143 (147)
T PF05659_consen 142 DI 143 (147)
T ss_pred HH
Confidence 44
No 383
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=35.85 E-value=84 Score=22.16 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
|+..++..++.++.+. .+|+++..|+..|..+
T Consensus 10 Lqe~~d~IEqkiedid-------~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDID-------EQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -----THHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHH-------HHHHHHHHHHHHHHHh
Confidence 4445555555555554 4445555556666554
No 384
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=35.72 E-value=3.2e+02 Score=24.35 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 129 NKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 129 ~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
.-..+....+..+......|+..++-+-|...+.+..-+..-...+.
T Consensus 118 ~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ei~ 164 (173)
T PRK01773 118 AFSKEIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEIE 164 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555566666666778888888888888777766655444433
No 385
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=35.69 E-value=3.1e+02 Score=24.19 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLAS-QKRLENKCKAAEQASEDWYRKAQLA 148 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~A~-~k~le~k~~~~~~~~~~~e~rA~~A 148 (330)
+|.++..++..+-..+-+.++.. ..-++....+.++.|.+++....++..+ ...+.. +...+....+......
T Consensus 31 ~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a---~~~~~~~~~ea~L~~~ 107 (155)
T PRK06569 31 ITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES---EFLIKKKNLEQDLKNS 107 (155)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 68888888876655544444433 3445555556666666666665555444 222322 2333344445555555
Q ss_pred HhcCcHHHHHHH
Q 020141 149 LQKGEEDLAREA 160 (330)
Q Consensus 149 L~~G~EdLAreA 160 (330)
|..|..+.=..+
T Consensus 108 ~~~~~~~~~~~~ 119 (155)
T PRK06569 108 INQNIEDINLAA 119 (155)
T ss_pred HHHHHHHHHHHH
Confidence 555555544433
No 386
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=35.62 E-value=4.1e+02 Score=25.62 Aligned_cols=179 Identities=20% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccccccceeeEEeccCccccccccCCCcccccCc-hHHHHHHHHHHHHHHHhhc
Q 020141 13 MPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVTRLRIAPSSRSHCYRQGGGALNTRMN-LFDRLARVVKSYANAILSS 91 (330)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ms-if~Rl~~lira~in~~ldk 91 (330)
|+.+...+++|.+++. -..+||+.+.-.=.++.+..... +.-+..++. |.+-=+.++.+.-+...|.
T Consensus 13 ~~~~~~~~~~~~~ss~--------~~~~~~~~~~~~~~~r~~~~~~~----~pe~sr~L~~LIk~EK~vi~s~e~~are~ 80 (271)
T PF13805_consen 13 PTASQIANPPPPPSST--------KSGRFFGKGSLSHSFRKSTAGSQ----QPELSRKLQRLIKAEKSVIRSLESAARER 80 (271)
T ss_dssp -----------------------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCCC--------CCCcccCCCCcchhhhccccccc----ChHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q 020141 92 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 171 (330)
Q Consensus 92 ~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 171 (330)
..-...+-.--..+ .++|..+-.-++-++.+.-.++..|... -+-.+-...++...++.|+- .=.++..+.+++
T Consensus 81 ~~~A~~L~~WG~~e-dddl~DIsDklgvLl~e~ge~e~~~a~~----~d~yR~~LK~IR~~E~sl~p-~R~~r~~l~d~I 154 (271)
T PF13805_consen 81 KAAAKQLSEWGEQE-DDDLSDISDKLGVLLYEIGELEDQYADR----LDQYRIHLKSIRNREESLQP-SRDRRRKLQDEI 154 (271)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhH-HHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 172 ~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
..|+.. +-....+..|+..|..+|...--.+.++..++
T Consensus 155 ~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 155 AKLKYK-DPQSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhh
No 387
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=35.58 E-value=1.5e+02 Score=29.53 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
.+..++++.+..++..+......+..+...+..++.++.++
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444444444444443
No 388
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=35.51 E-value=3.8e+02 Score=25.09 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENK-CKAAEQASEDWYRKAQLALQKGEED 155 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k-~~~~~~~~~~~e~rA~~AL~~G~Ed 155 (330)
+.+.-|.+++.....+++..+....+ ..++..+...|...+..-+..++++
T Consensus 41 ~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~e 92 (255)
T TIGR03825 41 EFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQE 92 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666655543333 3455556677777666655555544
No 389
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=35.44 E-value=1.9e+02 Score=21.68 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
..+.+..++..++..+..++.++......+.++..+..+++.+..
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555544443
No 390
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=35.37 E-value=1.3e+02 Score=28.84 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
++.+..++..+..+|..|+.+...+..+|.+++.+++-|
T Consensus 73 ~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 73 RQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555555555555555444
No 391
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.31 E-value=2.2e+02 Score=23.18 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQ 181 (330)
Q Consensus 168 e~~~~~le~qle~~ 181 (330)
+..+..++..++.+
T Consensus 48 ~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 48 DRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHhC
Confidence 33333444443333
No 392
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=35.01 E-value=4.6e+02 Score=26.00 Aligned_cols=13 Identities=0% Similarity=0.204 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 020141 128 ENKCKAAEQASED 140 (330)
Q Consensus 128 e~k~~~~~~~~~~ 140 (330)
+.++.++++....
T Consensus 10 ~~efq~Lqethr~ 22 (330)
T PF07851_consen 10 QKEFQELQETHRS 22 (330)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 393
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.97 E-value=6.2e+02 Score=27.48 Aligned_cols=141 Identities=9% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 020141 77 LARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQ--KRLENKCKAAEQASEDWYRKAQLALQKGEE 154 (330)
Q Consensus 77 l~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~--k~le~k~~~~~~~~~~~e~rA~~AL~~G~E 154 (330)
....+.-+++.-.+....-..-|++.+.++++++..++..+....... -.+..+-...-.++.+++.+-..+
T Consensus 250 a~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l------ 323 (726)
T PRK09841 250 ANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNEL------ 323 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 155 DLAREALKR--------RKSYADNANALKAQLDQQKNVVNNL---VSNTRLLESKIQEARSKKDTLKARAQSAKTATKVS 223 (330)
Q Consensus 155 dLAreAL~r--------k~~~e~~~~~le~qle~~~~~v~~L---k~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~ 223 (330)
..-..-+.. ...+..+...++.+++.++.++..+ ...+..|+...+-.+.-...|..|.+-++.+....
T Consensus 324 ~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~ 403 (726)
T PRK09841 324 TFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSA 403 (726)
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 394
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=34.96 E-value=6.1e+02 Score=27.37 Aligned_cols=154 Identities=14% Similarity=0.241 Sum_probs=70.6
Q ss_pred HHHHhhccCCHHHHHH---H---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q 020141 85 ANAILSSFEDPEKILE---Q---AVLEMNDDLVKMRQATA---QVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEED 155 (330)
Q Consensus 85 in~~ldk~EDPe~mLe---Q---~Irdme~~L~kar~~lA---~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~Ed 155 (330)
|+..|-.+-||.-.|. . -+++...+..+.+..+- .-.+..+..+..+..+...+.+++.+-......
T Consensus 92 vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~---- 167 (629)
T KOG0963|consen 92 VYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIEN---- 167 (629)
T ss_pred HHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH----
Confidence 3444556778854433 1 12222223333333333 333444445555555555555555555444332
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC
Q 020141 156 LAREALKRRK----SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS--AKTATKVSEMLGNV 229 (330)
Q Consensus 156 LAreAL~rk~----~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~--AkAq~~~~~~~~~~ 229 (330)
.|+.-.. +..++-..|+.+......++..++..+..|...+.....++..++..+.- +--...
T Consensus 168 ---~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~ae-------- 236 (629)
T KOG0963|consen 168 ---AANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAE-------- 236 (629)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH--------
Confidence 1221111 12223334444444455555555555555555555556666555554111 100111
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHH
Q 020141 230 NTSSALSAFEKMEEKVLTMESQADS 254 (330)
Q Consensus 230 ~~~sa~~~feRmEeki~~~EA~aeA 254 (330)
.+-.+..|++...+|..++.+.+-
T Consensus 237 -v~lim~eLe~aq~ri~~lE~e~e~ 260 (629)
T KOG0963|consen 237 -VSLIMTELEDAQQRIVFLEREVEQ 260 (629)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122455666666666666665553
No 395
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=34.94 E-value=2.6e+02 Score=27.74 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 020141 107 NDDLVKMRQATAQVLA 122 (330)
Q Consensus 107 e~~L~kar~~lA~~~A 122 (330)
+.++.+++..+..+.+
T Consensus 102 ~~~l~~a~A~l~~A~a 117 (397)
T PRK15030 102 QATYDSAKGDLAKAQA 117 (397)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 396
>PF14282 FlxA: FlxA-like protein
Probab=34.59 E-value=2.5e+02 Score=22.83 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 020141 199 IQEARSKKDTLK 210 (330)
Q Consensus 199 i~e~k~k~~~Lk 210 (330)
+..+..++..|.
T Consensus 53 ~q~Lq~QI~~Lq 64 (106)
T PF14282_consen 53 IQLLQAQIQQLQ 64 (106)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 397
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=34.40 E-value=3.4e+02 Score=24.32 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 116 ATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG--EEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 116 ~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G--~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
++-.++..+..+...|..+...+.+-..+...+...| +.+-...+..+...++..+..++..+
T Consensus 122 svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~ 186 (236)
T PF09325_consen 122 SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEF 186 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666666667777777776666666655552 33333344333344444443333333
No 398
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.34 E-value=2.7e+02 Score=23.16 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 104 LEMNDDLVKMRQATAQVLASQKRLENKCKAAE---QASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 180 (330)
Q Consensus 104 rdme~~L~kar~~lA~~~A~~k~le~k~~~~~---~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~ 180 (330)
..+...+..+......+.+.....+.=++++. ....=|..--..-+....+++-... .+.++.++..+..
T Consensus 17 q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l-------~~r~E~ie~~ik~ 89 (121)
T PRK09343 17 QQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKEL-------KERKELLELRSRT 89 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34444455555554444444444444444433 3344444444444555555444444 3333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 181 QKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 181 ~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
++.....++..+.+++.+|.++-
T Consensus 90 lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 90 LEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555543
No 399
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.13 E-value=1.6e+02 Score=20.46 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
++..++.++..-+.|+.+...|...-+.++.+...|.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555544444444
No 400
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.04 E-value=4.8e+02 Score=25.90 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 164 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 164 k~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
-.++++...++++......+..+++.......-..|..-+.+...++.
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~ 53 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKK 53 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444334444443444444433
No 401
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.00 E-value=2.6e+02 Score=22.72 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ---ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLD 179 (330)
Q Consensus 103 Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~---~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle 179 (330)
+..++..+..+...+..+.......+.=++++.. ...=|.---..-+....++.--..-. .+..++..+.
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~-------r~e~ie~~i~ 84 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKE-------KKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHH-------HHHHHHHHHH
Confidence 3444445555555555444444444444444333 33333333344566666655555533 3334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 180 QQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 180 ~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
........++..+.+++.+|+++
T Consensus 85 ~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 85 TLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555443
No 402
>PRK10807 paraquat-inducible protein B; Provisional
Probab=33.96 E-value=4.8e+02 Score=27.52 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=27.1
Q ss_pred ccCchHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 69 TRMNLFDRLARVVKSYANAILSSFED-PEKILEQAVLEMNDDLVKMRQATA 118 (330)
Q Consensus 69 ~~Msif~Rl~~lira~in~~ldk~ED-Pe~mLeQ~Irdme~~L~kar~~lA 118 (330)
+..|-|..|. ..++.+++++.. | |++.+.++...+..++..+.
T Consensus 410 t~ps~l~~l~----~~~~~il~kin~lp---le~i~~~l~~tL~~~~~tl~ 453 (547)
T PRK10807 410 TVSGGLAQIQ----QKLMEALDKINNLP---LNPMIEQATSTLSESQRTMR 453 (547)
T ss_pred cCCCCHHHHH----HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 5567777775 577788888774 4 55555566666655555443
No 403
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.94 E-value=4.7e+02 Score=25.72 Aligned_cols=107 Identities=15% Similarity=0.238 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 176 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ 176 (330)
..|..-++.++++-...|.....+......++.+-..+ +.+|-++-. .|=.....+.+.++.-..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~------------~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLS------------EANQQIASLSEELARKTE 227 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhh------------hcchhHHHHHHHHHHHHH
Confidence 67777788888877777777766665555554443333 222322211 122333444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 177 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 177 qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 218 (330)
....+...|..|..++..++.+++.+-..-+.|......++-
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske 269 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE 269 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666677788888888888888888888888888777666543
No 404
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=33.92 E-value=2.2e+02 Score=21.97 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 138 SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL----KAQLDQQKNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 138 ~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~l----e~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
+++..+++..++..+..--.----.=+...+..+..+ ..+.+.+...+.+++..+..|+.++.+++.+
T Consensus 8 ~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 8 FDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 405
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=33.77 E-value=4.3e+02 Score=25.27 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.4
Q ss_pred HHHHHH
Q 020141 278 DLANLK 283 (330)
Q Consensus 278 eLa~LK 283 (330)
.+..++
T Consensus 250 ~~~~i~ 255 (331)
T PRK03598 250 NLGQAQ 255 (331)
T ss_pred HHhhCC
Confidence 344343
No 406
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=33.71 E-value=6.4e+02 Score=27.20 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 020141 128 ENKCKAAEQASEDWYRKAQ------LALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNT-------RL 194 (330)
Q Consensus 128 e~k~~~~~~~~~~~e~rA~------~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l-------~~ 194 (330)
+.++.+++..+..|..+.. ..+..++..+-| |+..-..+.+++..++.-...+...--.++..+ ++
T Consensus 121 EerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR-AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~ke 199 (617)
T PF15070_consen 121 EERLAELEEELERLQEQQEDRQKLLEQLQSDKATASR-ALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKE 199 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 4455555666666655542 235555555444 677777888888888776665555433333333 25
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020141 195 LESKIQEARSKKDTLKAR 212 (330)
Q Consensus 195 Le~Ki~e~k~k~~~LkAr 212 (330)
|..++.+++.++..++.+
T Consensus 200 L~~kl~~l~~~l~~~~e~ 217 (617)
T PF15070_consen 200 LQKKLGELQEKLHNLKEK 217 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666665544
No 407
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=33.63 E-value=70 Score=27.13 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK 112 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~k 112 (330)
-.+=+.+-++-++|-+++++|.-.+.|+|.++|++.=|+.
T Consensus 84 Pik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 84 PIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999876653
No 408
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=33.59 E-value=3.8e+02 Score=24.56 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q 020141 92 FEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 171 (330)
Q Consensus 92 ~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 171 (330)
.++|...|+..|.-.+.....+...++.+-...++.=.+++.-. .+ .+.. ..+|||--. -++...
T Consensus 79 ~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EK---rk---h~~~-~aqgDD~t~--------lLEkER 143 (192)
T PF09727_consen 79 YENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEK---RK---HAED-MAQGDDFTN--------LLEKER 143 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHH-HHccchHHH--------HHHHHH
Confidence 66899999999999999888888888777666666544444322 22 2222 456665322 136666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 172 ~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
..|+.+++.-+.+...+.....++..++.+=+.+...+.
T Consensus 144 eRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~ 182 (192)
T PF09727_consen 144 ERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFV 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888887777777666655543
No 409
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.54 E-value=2.5e+02 Score=23.12 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 204 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~ 204 (330)
.+...+..++..+........+++..+.+...++..++.
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666665544
No 410
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=33.40 E-value=5e+02 Score=25.85 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=28.3
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 89 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 139 (330)
Q Consensus 89 ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~ 139 (330)
+..+.||..+|...|--+-+.+..+......+.....+|+...+++.++++
T Consensus 118 L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE 168 (342)
T PF06632_consen 118 LKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLE 168 (342)
T ss_dssp -EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778987777677666666666666665554444444444444443333
No 411
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=33.33 E-value=5.1e+02 Score=25.98 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=18.7
Q ss_pred cCchHHHHHHHHHHHHHHHhhccCCHHHHH
Q 020141 70 RMNLFDRLARVVKSYANAILSSFEDPEKIL 99 (330)
Q Consensus 70 ~Msif~Rl~~lira~in~~ldk~EDPe~mL 99 (330)
.++||.+|..++. ...++-..+.||..+-
T Consensus 2 ~~~~~~kl~~~~~-r~~el~~~L~~p~v~~ 30 (363)
T COG0216 2 KPSLLEKLESLLE-RYEELEALLSDPEVIS 30 (363)
T ss_pred CchHHHHHHHHHH-HHHHHHHHhcCccccc
Confidence 3568888887665 5556666666776443
No 412
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.93 E-value=4.2e+02 Score=24.83 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 208 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 208 (330)
+|......|..+.......+..+..++..|+.-|.+.++.++.
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555555566555555555554
No 413
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.66 E-value=4.1e+02 Score=24.63 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=8.6
Q ss_pred CChhhHHHHHHHHHH
Q 020141 311 FRDAEIEKELNELRQ 325 (330)
Q Consensus 311 ~~~~~~~~~~~~~~~ 325 (330)
.++.+++.||.-|-.
T Consensus 158 ide~dL~aELdaL~~ 172 (218)
T KOG1655|consen 158 IDEADLDAELDALGQ 172 (218)
T ss_pred cCHHHHHHHHHHHHh
Confidence 455666666665543
No 414
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=32.41 E-value=2.6e+02 Score=22.30 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 179 DQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 218 (330)
+.+..+....+..+...++++..+++++..|....+..++
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~Rt 43 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERT 43 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555433333333
No 415
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=32.41 E-value=1.7e+02 Score=31.33 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=11.6
Q ss_pred CCCccccccc--cccccccc
Q 020141 25 SSSSSLCMVK--KPLTTSFF 42 (330)
Q Consensus 25 ~~~~~~~~~~--~~l~~~~~ 42 (330)
++.+.+|+++ .-+..+||
T Consensus 13 gn~s~~~~lR~S~~~r~~w~ 32 (907)
T KOG2264|consen 13 GNGSFVPSLRVSAFLRFIWF 32 (907)
T ss_pred CCCCcCeeeeehhhHHHHHH
Confidence 4556678876 22777776
No 416
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.32 E-value=2e+02 Score=21.05 Aligned_cols=41 Identities=10% Similarity=0.237 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 172 ~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
..++..+......+..++....++...++.++.-...|..-
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555444443
No 417
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.27 E-value=4.1e+02 Score=24.54 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
+.+|.|.++|...++..=-..+..+.+.-+.+..++......+..+...... -.-.++..+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~-------------------K~~ELE~ce 72 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT-------------------KQLELEVCE 72 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------------------hhHhHHHhH
Confidence 5678888888888888777777776666665555555555555544432211 122334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
.++......++-++..+..++..+..++.....+
T Consensus 73 ~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 73 NELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 5555566666666666777777777766666654
No 418
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=32.19 E-value=4.2e+02 Score=24.63 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLA-----SQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~A-----~~k~le~k~~~~~~~~~~~e~r 144 (330)
+|+.|..++..+-+.+.+.+++- ..-.+....+.+..+.+++.....++. ..+..+.-+++++.+++....+
T Consensus 26 l~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~ 105 (246)
T TIGR03321 26 LYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREK 105 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 020141 145 AQLALQKGEEDLAREALKRRKSYADNANA 173 (330)
Q Consensus 145 A~~AL~~G~EdLAreAL~rk~~~e~~~~~ 173 (330)
|+..+..-....-.+.-.+...+.-.+..
T Consensus 106 a~~~ie~E~~~a~~~l~~ei~~la~~~A~ 134 (246)
T TIGR03321 106 WQEALRREQAALSDELRRRTGAEVFAIAR 134 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 419
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=32.11 E-value=5.9e+02 Score=26.30 Aligned_cols=143 Identities=14% Similarity=0.186 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP----EKILEQAVLEMNDDLVKMRQATAQVLA-----SQKRLENKCKAAEQASEDWYR 143 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP----e~mLeQ~Irdme~~L~kar~~lA~~~A-----~~k~le~k~~~~~~~~~~~e~ 143 (330)
...+++++..++.+--.---+|- ...++-.+++|++....-++=+-..-. +...+..+.+++..+-.++.+
T Consensus 118 ~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q 197 (447)
T KOG2751|consen 118 VLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQ 197 (447)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 55666666666543221111111 234444555555554444433332221 222233333333333333333
Q ss_pred HHHHHHhcCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 144 KAQLALQKGEEDLAREAL---KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 144 rA~~AL~~G~EdLAreAL---~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 216 (330)
+... +.+.+++|+-... .++..+.++-..|...+-....++-.....+..++.+++=...+++.|......+
T Consensus 198 ~lk~-le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n 272 (447)
T KOG2751|consen 198 QLEE-LEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFN 272 (447)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3333 4555666664432 2334455555566666666667777777777777777777777777777654443
No 420
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=31.99 E-value=2.9e+02 Score=25.43 Aligned_cols=66 Identities=15% Similarity=0.272 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 140 (330)
Q Consensus 72 sif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~ 140 (330)
||.+||.+++...++.--..+..-...|+..|...++.+..+...+. ..+.++..|+..++..+.+
T Consensus 171 Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~---~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 171 GIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLE---SKEERLRKQFSAMESLISQ 236 (239)
T ss_pred cHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45566555555544221111222234444444455544444444322 2333444444444444443
No 421
>PRK11820 hypothetical protein; Provisional
Probab=31.83 E-value=4.8e+02 Score=25.22 Aligned_cols=140 Identities=24% Similarity=0.276 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH----------------HHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEE----------------DLAREA 160 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~E----------------dLAreA 160 (330)
..+...+.++-+.+.++|..-...+. +-+..++..++..+.+.+..+-..+..-++ -|+.++
T Consensus 129 ~~l~~al~~AL~~l~~~R~~EG~~L~--~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~qEv 206 (288)
T PRK11820 129 AALLAALDEALDDLIEMREREGAALK--ADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLEQEV 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 57777788888888888877554432 334444444444444444444433333332 222222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 020141 161 --LKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAF 238 (330)
Q Consensus 161 --L~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~f 238 (330)
+..|.+..+.+..|...++++...+..=..-=++|.-=++|+-++.+++-+..+.+....-+ =.....+
T Consensus 207 al~adK~DI~EEi~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEm~RE~NTigSKs~~~~is~~v---------Ve~K~el 277 (288)
T PRK11820 207 ALLAQKADIAEELDRLKSHLKEFREILKKGGPVGRKLDFLMQELNREANTLGSKSNDAEITNLV---------VELKVLI 277 (288)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHhHHHHHHHHccCcHHHHHHH---------HHHHHHH
Confidence 12333333333333333333333332211111245555666666666665554444322111 1345688
Q ss_pred HHHHHHHHh
Q 020141 239 EKMEEKVLT 247 (330)
Q Consensus 239 eRmEeki~~ 247 (330)
|+|+|+|..
T Consensus 278 EkiREQVQN 286 (288)
T PRK11820 278 EQMREQVQN 286 (288)
T ss_pred HHHHHHHhc
Confidence 888888764
No 422
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.71 E-value=2.4e+02 Score=21.60 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
.++++.|..+-+.+......+...+.+|..++.+.......+..+
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~ 55 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKK 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555544433
No 423
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=31.54 E-value=6e+02 Score=26.20 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 100 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 138 (330)
Q Consensus 100 eQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~ 138 (330)
+|-+.+++..+.+..+....+.++.--+...+..+.+..
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~ 50 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKL 50 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444444444444444433333
No 424
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=31.52 E-value=3.6e+02 Score=23.61 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQ----------------KRLENKCKA 133 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~A~~----------------k~le~k~~~ 133 (330)
+|+.+..++..+-+.+.+.+++- ..-.++...+.+..+.+++.....++... +..++.++.
T Consensus 37 ~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~ 116 (173)
T PRK13460 37 AWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQ 116 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 134 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 188 (330)
Q Consensus 134 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~L 188 (330)
.+..+..-.++|...|+..=-+||-.+..+...-.-.-.....-++..-..+..+
T Consensus 117 a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~lid~~i~~~~~~ 171 (173)
T PRK13460 117 AVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIETELAKLGKL 171 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHcccc
No 425
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.51 E-value=6.1e+02 Score=26.88 Aligned_cols=58 Identities=26% Similarity=0.412 Sum_probs=36.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHhhcccC-----CChhHHHhhhccCCHHHHHHHHHHHcCC
Q 020141 231 TSSALSAFEKMEEKVLTMESQADSLNQLTT-----DDLEGKFALLETSSVDDDLANLKKELSG 288 (330)
Q Consensus 231 ~~sa~~~feRmEeki~~~EA~aeA~~eL~~-----~~Ld~k~~~le~~~vd~eLa~LKa~l~~ 288 (330)
+.+-+.++.|+..+-.++++--+.+++-.| ..+++-|+.-.-..+-+.|+.|++-+..
T Consensus 104 sadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalqkcL~A 166 (828)
T KOG4182|consen 104 SADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQKCLHA 166 (828)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Confidence 456677888888888888877666655321 2344444432223577888888876643
No 426
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=31.48 E-value=2.5e+02 Score=29.08 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHHHH--hhccC--CHH---HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLARVVKSYANAI--LSSFE--DPE---KILEQAVLEMNDDLVK-MRQATAQVL-ASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 72 sif~Rl~~lira~in~~--ldk~E--DPe---~mLeQ~Irdme~~L~k-ar~~lA~~~-A~~k~le~k~~~~~~~~~~~e 142 (330)
+.++||.+.|-++.+.- |+.++ ||. .|.-+..-+.-.+... +.+++-... .......+++.++++++++-.
T Consensus 61 ~AL~rLl~~~p~~~~~~~~Ls~l~~~dm~~m~mMat~L~l~~~ad~a~s~~kq~ei~td~Q~~LR~k~~~e~q~qi~ka~ 140 (473)
T PRK15362 61 NALKRILDAVPGNHKRPLSLSDFEQTPMDVMSMMATLLILSVFGDNAQSLCQALEIATEVQEALRDKQVKEYQEQIQKAI 140 (473)
T ss_pred HHHHHHHhhccCCCCCCcchHhhcCCChHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888887765555 77777 564 2233333332222222 222221111 123445677899999999999
Q ss_pred HHHHHHHhcCc
Q 020141 143 RKAQLALQKGE 153 (330)
Q Consensus 143 ~rA~~AL~~G~ 153 (330)
+++..|-+.|=
T Consensus 141 e~adkA~KagI 151 (473)
T PRK15362 141 EQEDKARKAGI 151 (473)
T ss_pred HHHHHHHhccH
Confidence 99999888875
No 427
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=31.48 E-value=2.7e+02 Score=22.21 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
+++|..++..|..++..+......+++.
T Consensus 26 vdqLss~V~~L~~kvdql~~dv~~a~aa 53 (85)
T PRK09973 26 VNQLASNVQTLNAKIARLEQDMKALRPQ 53 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 428
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=31.44 E-value=3.1e+02 Score=22.97 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 113 MRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 190 (330)
Q Consensus 113 ar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~ 190 (330)
+...++.+..+++.++.+..++......+..+...=+. --+-...+|.+.-++++.+..++..+......+.....
T Consensus 38 ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~--~~~~~~~~LKEiGDveNWa~~iE~Dl~~i~~~L~~v~~ 113 (121)
T PF06320_consen 38 LNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLK--LVDSFNDALKEIGDVENWAEMIERDLRVIEETLRYVYE 113 (121)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667778888888888888877777777776655322 22234567888888888888888777766666555443
No 429
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=31.33 E-value=1.1e+02 Score=21.58 Aligned_cols=12 Identities=8% Similarity=0.280 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 020141 168 ADNANALKAQLD 179 (330)
Q Consensus 168 e~~~~~le~qle 179 (330)
+..++.+..+++
T Consensus 18 Eqkiedid~qIa 29 (46)
T PF08946_consen 18 EQKIEDIDEQIA 29 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 334444444433
No 430
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=31.32 E-value=1.8e+02 Score=21.53 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
|+.|...|..|+..|..++..+..-.+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443333
No 431
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.15 E-value=6.5e+02 Score=26.56 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
.|+.|+..+..++..|.+++.+-...|+.+
T Consensus 484 NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 484 NYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 432
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=31.01 E-value=4.2e+02 Score=24.28 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR---SKKDTLKARAQSAKTATK-VSEMLGNVNTSSALSAFEKMEE 243 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k---~k~~~LkAr~~~AkAq~~-~~~~~~~~~~~sa~~~feRmEe 243 (330)
.++...++.++++..+.+..+.+.+..|+.+-.+++ .+++-+..- .++... +-....++..+.+...++.|-.
T Consensus 69 ~dq~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~e~re~~l~~---~qae~~klv~iY~~Mkp~~aA~~le~l~~ 145 (192)
T COG3334 69 ADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILRS---KQAEDGKLVKIYSKMKPDAAAAILENLPD 145 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHcCChhhHHHHHHcCCH
Confidence 455556666666666666666666666655522222 222222211 233322 5566667766666665555444
Q ss_pred H
Q 020141 244 K 244 (330)
Q Consensus 244 k 244 (330)
.
T Consensus 146 e 146 (192)
T COG3334 146 E 146 (192)
T ss_pred H
Confidence 3
No 433
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.98 E-value=2.2e+02 Score=20.98 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKDTLKARA 213 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 213 (330)
+++|-.++..|..|+..+......+++-.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 434
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=30.72 E-value=1.6e+02 Score=24.17 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
.+..++.++..+++.|..++..+...+.+++.=++.|
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666555
No 435
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=30.46 E-value=1.2e+02 Score=22.49 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020141 189 VSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 189 k~~l~~Le~Ki~e~k~k~~ 207 (330)
+..+..||.++++.+.+..
T Consensus 31 EqRLa~LE~rL~~ae~ra~ 49 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQ 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333
No 436
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=30.45 E-value=1.9e+02 Score=20.22 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
...+++.+...++++..-.-.....+.+|+..|.++
T Consensus 8 kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E~ 43 (45)
T PF04394_consen 8 KDKQIEELQKLLDQQQQLALQDNKKLEELKAELEEY 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346788888888888888888888888888887773
No 437
>PRK14139 heat shock protein GrpE; Provisional
Probab=30.26 E-value=3.2e+02 Score=24.74 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
+..+..++..++..+..+..++..+..+...++.++.+..
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666665555555544433
No 438
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=30.25 E-value=4.8e+02 Score=24.75 Aligned_cols=6 Identities=17% Similarity=0.667 Sum_probs=2.3
Q ss_pred HHHHHH
Q 020141 278 DLANLK 283 (330)
Q Consensus 278 eLa~LK 283 (330)
.+..++
T Consensus 250 ~~~~i~ 255 (327)
T TIGR02971 250 DINRVR 255 (327)
T ss_pred HHhhCC
Confidence 333333
No 439
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=30.12 E-value=3.7e+02 Score=23.44 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 214 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 214 (330)
.+...++-++..++.|...+.+++..|+++-.+...+....+
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554433
No 440
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=30.11 E-value=7.9e+02 Score=27.18 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 020141 175 KAQLDQQKNVVNNLVSNTRLLESKI----QEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 175 e~qle~~~~~v~~Lk~~l~~Le~Ki----~e~k~k~~~LkAr~~~AkA 218 (330)
..+...+-.+|..|+..|+.-+... ..|+-+...|.-|.+.|.-
T Consensus 579 r~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~ 626 (961)
T KOG4673|consen 579 RERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAER 626 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566667766666554433 3456677778888777743
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=29.97 E-value=9e+02 Score=27.77 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 104 LEMNDDLVKMRQATAQVLASQKRLENKCK 132 (330)
Q Consensus 104 rdme~~L~kar~~lA~~~A~~k~le~k~~ 132 (330)
.|.-..|-+..+.++++++.++.+++++-
T Consensus 879 ed~~~~l~~qQe~~a~l~~sQ~el~~~l~ 907 (1283)
T KOG1916|consen 879 EDLLPQLLAQQETMAQLMASQKELQRQLS 907 (1283)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444555566677777888777777654
No 442
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.90 E-value=2.5e+02 Score=21.41 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDT 208 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~ 208 (330)
|..+-..+...+.+|+..+..++..+..++.+.+.
T Consensus 24 LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 24 LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444433333333
No 443
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.70 E-value=2.9e+02 Score=22.08 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ--ASEDWYRKAQLA-LQKGEEDLAREALKRRKSYADNANALKAQLD 179 (330)
Q Consensus 103 Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~--~~~~~e~rA~~A-L~~G~EdLAreAL~rk~~~e~~~~~le~qle 179 (330)
+..+++++...-..+..+-......+.=.+++.. .-.........+ +....+++--.. ++.+..++..+.
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~L-------e~~~e~le~~i~ 80 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTEL-------KERLETIELRIK 80 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHH-------HHHHHHHHHHHH
Confidence 3445555555555555544444444333333332 122333444444 444444443333 344444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 180 QQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 180 ~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
........+...+.+++.+|.++
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 444
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.69 E-value=9.1e+02 Score=27.78 Aligned_cols=100 Identities=11% Similarity=0.231 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATAQ-------VLASQKR--LENKCKAAEQASEDWYRKAQLALQKGE--EDLAREALKRRKSYADNA 171 (330)
Q Consensus 103 Irdme~~L~kar~~lA~-------~~A~~k~--le~k~~~~~~~~~~~e~rA~~AL~~G~--EdLAreAL~rk~~~e~~~ 171 (330)
|-|.-.+|.++++.|+. .+++.+- .+.+++....++++++......-..=. .++.---+.-+..+....
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444555555555443 3333333 344454555555555544433211100 112222223333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 172 ~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
..++..++........++..+.+++..|.+.
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554433
No 445
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.51 E-value=6e+02 Score=25.59 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=17.0
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHH
Q 020141 231 TSSALSAFEKMEEKVLTMESQAD 253 (330)
Q Consensus 231 ~~sa~~~feRmEeki~~~EA~ae 253 (330)
.-++...++|..++++.+..+..
T Consensus 345 ~lsP~~~L~r~~qrL~~L~~rL~ 367 (438)
T PRK00286 345 QQNPQRRIERAQQRLEQLEQRLR 367 (438)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888777654
No 446
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.38 E-value=2e+02 Score=24.57 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
++.+...+++.|+++...++..-..|...+..||..+.+-+.+...+
T Consensus 26 ERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45556677777777777777777777777777777666655554433
No 447
>PF15294 Leu_zip: Leucine zipper
Probab=29.37 E-value=5.3e+02 Score=24.97 Aligned_cols=104 Identities=15% Similarity=0.257 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
..+|.-.|+.+..+-.+++..+..+-......-..-..++..+.++.. ..+-.+|..++.- -.....+++++++.++
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~--~~~~~~~k~~~~~-~~q~l~dLE~k~a~lK 203 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD--EQGDQKGKKDLSF-KAQDLSDLENKMAALK 203 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhccccccc-cccchhhHHHHHHHHH
Confidence 466777777887777777775554444333333333344444444333 2222223332222 1133344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
.+++.. +.....+...|+..+...+..
T Consensus 204 ~e~ek~---~~d~~~~~k~L~e~L~~~Khe 230 (278)
T PF15294_consen 204 SELEKA---LQDKESQQKALEETLQSCKHE 230 (278)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 444332 333444444555555444443
No 448
>PRK12705 hypothetical protein; Provisional
Probab=29.31 E-value=6.9e+02 Score=26.27 Aligned_cols=18 Identities=0% Similarity=0.018 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020141 127 LENKCKAAEQASEDWYRK 144 (330)
Q Consensus 127 le~k~~~~~~~~~~~e~r 144 (330)
.++++++...++...+.+
T Consensus 68 ~e~e~~~~~~~~~~~e~r 85 (508)
T PRK12705 68 QRQEARREREELQREEER 85 (508)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 449
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=29.12 E-value=4.5e+02 Score=24.05 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKM 113 (330)
Q Consensus 72 sif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~ka 113 (330)
|=|.+.|+.|...+..+.+ ....+-+....++.+.+...
T Consensus 56 gsl~~a~~~i~~e~e~~a~---~H~~~a~~L~~~v~~~l~~~ 94 (236)
T cd07651 56 GGLKNSLDTLRLETESMAK---SHLKFAKQIRQDLEEKLAAF 94 (236)
T ss_pred chHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3466666666555443322 23333333333444545444
No 450
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=29.00 E-value=5.9e+02 Score=25.32 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLAS 123 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~ 123 (330)
+.+..+.+++..++...+.
T Consensus 96 ~~~~~l~~A~a~l~~a~~~ 114 (390)
T PRK15136 96 DAEQAFEKAKTALANSVRQ 114 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666554443
No 451
>PRK14127 cell division protein GpsB; Provisional
Probab=28.87 E-value=2.1e+02 Score=23.84 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 177 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 177 qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 216 (330)
=|++.....+.|...+..|+.++..++.++..+..+....
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455556666777777777777777777777777665543
No 452
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.84 E-value=3.3e+02 Score=22.41 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
.++-+.+..++.++...-..+..|+..+..|-..=..++-+-..|+.+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666655555555444444444
No 453
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=28.82 E-value=6.5e+02 Score=25.78 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--------------------HH-----------HHHHHH
Q 020141 125 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK--------------------SY-----------ADNANA 173 (330)
Q Consensus 125 k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~--------------------~~-----------e~~~~~ 173 (330)
..++..+.++.+++.+..+-... |=-.+||+|.-+|.+|. .. ++.+++
T Consensus 223 r~~k~~Lt~l~~rvqkvRDeLe~-LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~dd~eE 301 (414)
T KOG2662|consen 223 RILKKRLTELTSRVQKVRDELEE-LLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGEDDVEE 301 (414)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH-HhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccccHHH
Confidence 34455555666666666665555 44578899999999992 22 577788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
++-.++..=.+++.+..++..|..-|.+.+.=.+
T Consensus 302 lEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~In 335 (414)
T KOG2662|consen 302 LEMLLEAYFMQIDSTLNKLESLREYIDDTEDIIN 335 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 8888888777887777777777777777665544
No 454
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=28.75 E-value=5.4e+02 Score=24.83 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 020141 81 VKSYANAILSSFE--DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 158 (330)
Q Consensus 81 ira~in~~ldk~E--DPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr 158 (330)
++..++++++..+ |-..+.......++..+...+..+......-++.+.++.++..++.++..+
T Consensus 171 LR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~r-------------- 236 (269)
T PF05278_consen 171 LRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGR-------------- 236 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 159 EALKRRKSYADNANALKAQLDQQKNVVNNL 188 (330)
Q Consensus 159 eAL~rk~~~e~~~~~le~qle~~~~~v~~L 188 (330)
...++.....+...+.-....|.++
T Consensus 237 -----l~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 237 -----LGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHh
No 455
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=28.62 E-value=7e+02 Score=26.07 Aligned_cols=92 Identities=13% Similarity=0.211 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCcHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 020141 104 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE---DWYRKAQLALQKGEEDLAREALKRRKSY--ADNANALKAQL 178 (330)
Q Consensus 104 rdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~---~~e~rA~~AL~~G~EdLAreAL~rk~~~--e~~~~~le~ql 178 (330)
+..+..+...+.....+.+....++.+++..+.... .+-+.++..|...=+.||-++|+.+..- +..-..+...+
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll 142 (475)
T PRK10361 63 ELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLL 142 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333222221 1233444556666678888888876542 22223333334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020141 179 DQQKNVVNNLVSNTRLL 195 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~L 195 (330)
.-++.+++.++..+.++
T Consensus 143 ~Pl~e~l~~f~~~v~~~ 159 (475)
T PRK10361 143 SPLREQLDGFRRQVQDS 159 (475)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 456
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=28.55 E-value=4e+02 Score=23.27 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 020141 82 KSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 161 (330)
Q Consensus 82 ra~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL 161 (330)
+..|..-++.+++-..-.+..+.+.+..|.+++......+...+.-..+. ......+-+..+..-+...+.++..+--
T Consensus 52 ~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~--~~~~~~~A~~e~~~~~~~a~~~i~~e~~ 129 (174)
T PRK07352 52 REAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAI--RAEIEKQAIEDMARLKQTAAADLSAEQE 129 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQ 180 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~ 180 (330)
.-...+..++..+--+...
T Consensus 130 ~a~~~l~~qi~~la~~~A~ 148 (174)
T PRK07352 130 RVIAQLRREAAELAIAKAE 148 (174)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 457
>PHA01750 hypothetical protein
Probab=28.53 E-value=2e+02 Score=22.01 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
.+++.+..++..++-....++.++.+.+.+.
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3444444444444444445555555555544
No 458
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=28.41 E-value=1.4e+02 Score=21.74 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=25.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 146 QLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 197 (330)
Q Consensus 146 ~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~ 197 (330)
..|...|| |.+.+.+..+++..-.+.......++.|+..|.++|.
T Consensus 8 q~AiasGD-------La~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 8 QQAIASGD-------LAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHcCc-------HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 45666776 3334444455555555555566666666666666553
No 459
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=28.37 E-value=2.9e+02 Score=23.88 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 200 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~ 200 (330)
..+.++|.+-..|.++++++...+..+...+..++.|++
T Consensus 74 ~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 74 QQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555544444444444444444444433
No 460
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=28.34 E-value=3.2e+02 Score=22.46 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 160 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 160 AL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
.+++.+..-..++.|..--..-=+.|.+++..++-|+.|+..+..-...+.++
T Consensus 45 llekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~~k 97 (101)
T PF12308_consen 45 LLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLSAK 97 (101)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhhhh
Confidence 33333333333333333333333445666666666666666666655555544
No 461
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=28.25 E-value=4.9e+02 Score=29.09 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q 020141 135 EQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNA 171 (330)
Q Consensus 135 ~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~ 171 (330)
.....+.-++.+...+.|+-|-|++.|.+..+.-+.+
T Consensus 537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenm 573 (820)
T PF13779_consen 537 QQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENM 573 (820)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 3445555666667777788777777777555444433
No 462
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.19 E-value=4.7e+02 Score=24.00 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Q 020141 93 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA 157 (330)
Q Consensus 93 EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLA 157 (330)
++..+.|.++|..++..+.++-..++.+......+.....++.+.+..+-+-=-..|..|=..||
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la 67 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA 67 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 35578999999999999999999999999999999999999988888776554455555555555
No 463
>PRK04654 sec-independent translocase; Provisional
Probab=27.83 E-value=5e+02 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHH
Q 020141 133 AAEQASEDWYRKAQLALQKGEEDLAR 158 (330)
Q Consensus 133 ~~~~~~~~~e~rA~~AL~~G~EdLAr 158 (330)
.+-+.+-+|-.+++.......+++-+
T Consensus 27 e~aRtlGk~irk~R~~~~~vk~El~~ 52 (214)
T PRK04654 27 KAARFAGLWVRRARMQWDSVKQELER 52 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333333
No 464
>PLN02678 seryl-tRNA synthetase
Probab=27.72 E-value=6.9e+02 Score=25.76 Aligned_cols=22 Identities=0% Similarity=0.009 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020141 124 QKRLENKCKAAEQASEDWYRKA 145 (330)
Q Consensus 124 ~k~le~k~~~~~~~~~~~e~rA 145 (330)
++.+..+++.++.+......+.
T Consensus 42 ~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 42 WRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 465
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.39 E-value=5.9e+02 Score=24.87 Aligned_cols=141 Identities=20% Similarity=0.304 Sum_probs=77.7
Q ss_pred CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 71 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQA------TAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 71 Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~------lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
++|=..+.++-.-.-+..+.-.+ +.-|-|.|-+++..|..++.. +..+.+.-..+..+..++...+..+-++
T Consensus 110 ~~ler~i~~Le~~~~T~~L~~e~--E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~e 187 (294)
T COG1340 110 KSLEREIERLEKKQQTSVLTPEE--ERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANE 187 (294)
T ss_pred HHHHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444443333222 455666777777777666643 3333444444444444444444444444
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 145 AQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 145 A~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 218 (330)
|+.-- +++. .+..+.-.+...+..|-..+......++.+...+..+...|.++...+..|.+....++.
T Consensus 188 aqe~h----e~m~-k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~ 256 (294)
T COG1340 188 AQEYH----EEMI-KLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKR 256 (294)
T ss_pred HHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42211 1222 344555556666666777777777777777777777777777777777666665555433
No 466
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=27.35 E-value=4.4e+02 Score=23.30 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQ----------------KRLENKCKA 133 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~A~~----------------k~le~k~~~ 133 (330)
+|+-|..++..+-..+.+.+.+- ..-.++.+.+.+..+.+++.....++... ..+++.+..
T Consensus 45 l~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~ 124 (184)
T CHL00019 45 GKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENY 124 (184)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 134 AEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 189 (330)
Q Consensus 134 ~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk 189 (330)
++..+..-..+|...++.-=.+||-++..+...-.-.-...+.-++..-..+..++
T Consensus 125 a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~~ld~~~~~~lid~~i~~l~~~~ 180 (184)
T CHL00019 125 KNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTINANIGLLGAMK 180 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHHHhcc
No 467
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=27.34 E-value=8.1e+02 Score=26.42 Aligned_cols=21 Identities=5% Similarity=0.109 Sum_probs=12.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhH
Q 020141 228 NVNTSSALSAFEKMEEKVLTM 248 (330)
Q Consensus 228 ~~~~~sa~~~feRmEeki~~~ 248 (330)
.++.....-.|+.+.++|+.+
T Consensus 481 ~~D~~gl~l~L~~l~~~vd~L 501 (656)
T PRK06975 481 SADLTGLAIKLDDAIAKIDAL 501 (656)
T ss_pred cCCHHHHHHHHHHHHHHHhhC
Confidence 444455566677776666654
No 468
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=27.34 E-value=4.7e+02 Score=23.69 Aligned_cols=26 Identities=31% Similarity=0.242 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 121 LASQKRLENKCKAAEQASEDWYRKAQ 146 (330)
Q Consensus 121 ~A~~k~le~k~~~~~~~~~~~e~rA~ 146 (330)
-+....++..+.+++..+.++++++.
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~ 148 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAA 148 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 469
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.25 E-value=3.1e+02 Score=26.81 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
+.-...-+.+..++..++..-++|+.+...|+..|+.+|+=.
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666666666666667777666666666665543
No 470
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=27.10 E-value=5.6e+02 Score=24.45 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 020141 96 EKILEQAVLE 105 (330)
Q Consensus 96 e~mLeQ~Ird 105 (330)
..+|.+++..
T Consensus 175 ~evL~~fl~~ 184 (297)
T PF02841_consen 175 EEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566666555
No 471
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.07 E-value=5.5e+02 Score=24.35 Aligned_cols=62 Identities=15% Similarity=0.334 Sum_probs=32.0
Q ss_pred HHHHHHHHHHH-HHhHHHHHHHhhcc-c-----CCChhHHHh-hhccCCHHHHHHHHHHHcCCCCCCCCCCCCC
Q 020141 234 ALSAFEKMEEK-VLTMESQADSLNQL-T-----TDDLEGKFA-LLETSSVDDDLANLKKELSGSSKKGELPPGR 299 (330)
Q Consensus 234 a~~~feRmEek-i~~~EA~aeA~~eL-~-----~~~Ld~k~~-~le~~~vd~eLa~LKa~l~~~~~~~~~~~~~ 299 (330)
+.+.|++||+. |..+-.-.-.+... + .+..-.+|. .++.-+++..+...-...+. |.-||++
T Consensus 194 ~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~d~~~Di~~fi~~~gT----G~~~P~~ 263 (269)
T cd07673 194 TAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANTTVESLIQKFAESKGT----GKERPGP 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCHHHHHHHHHHhcCC----CCCCCCC
Confidence 56788888764 55554443333321 1 122333443 23444677777777666544 4445553
No 472
>PRK06798 fliD flagellar capping protein; Validated
Probab=26.85 E-value=3.9e+02 Score=27.39 Aligned_cols=69 Identities=9% Similarity=0.118 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 72 NLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 72 sif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
||..||.+++...++ .-.-+..-..-|+..|..+++.+......+. ..+.++.+||..++..+.++..+
T Consensus 358 Gia~~l~~~l~~~~~-~~G~i~~r~~~l~~~i~~l~~~~~~~e~rl~---~~e~~l~~qf~ale~~ms~lnsQ 426 (440)
T PRK06798 358 GLGKEMEKSLDKIFG-DEGIIGERSKSIDNRVSKLDLKITDIDTQNK---QKQDNIVDKYQKLESTLAALDSQ 426 (440)
T ss_pred cHHHHHHHHHHhhhC-CCceeehhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 473
>PRK14154 heat shock protein GrpE; Provisional
Probab=26.73 E-value=5.2e+02 Score=23.94 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKM 241 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRm 241 (330)
+..++..++..+..++.++..+..+.+.++.++.+...-+.....-....-+...+.-+ +.|+|.
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVl------DnLeRA 118 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVA------DSLIHG 118 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------hHHHHH
No 474
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=26.70 E-value=4.2e+02 Score=23.99 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQ 214 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~ 214 (330)
-..|....+.-..+++.|+.+-..|+.+++...+|++.|---.+
T Consensus 118 r~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIER 161 (179)
T PF13942_consen 118 RARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIER 161 (179)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33444444455566677777777777777777777777754433
No 475
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=26.65 E-value=5.3e+02 Score=24.05 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHH
Q 020141 74 FDRLARVVKSYANAILSSFEDPE-KILEQAVLEMNDD 109 (330)
Q Consensus 74 f~Rl~~lira~in~~ldk~EDPe-~mLeQ~Irdme~~ 109 (330)
..||..+-......+-..+-+|. ..|+..|.++...
T Consensus 97 ~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~ 133 (223)
T cd07614 97 MKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHH 133 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555663 3555555554433
No 476
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=26.55 E-value=3.3e+02 Score=21.69 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 177 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 177 qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
+++++..+|..|..++.++...+..++...+..+..
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~E 60 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSE 60 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666665554443
No 477
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=26.40 E-value=5e+02 Score=23.65 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=1.5
Q ss_pred CchHHHHHHHH
Q 020141 71 MNLFDRLARVV 81 (330)
Q Consensus 71 Msif~Rl~~li 81 (330)
+-||.+|..-+
T Consensus 48 y~l~qkl~~~~ 58 (190)
T PF06936_consen 48 YLLWQKLSPSF 58 (190)
T ss_dssp --------HHH
T ss_pred HHHHHHHHHHH
Confidence 34666665544
No 478
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.35 E-value=2.7e+02 Score=20.50 Aligned_cols=45 Identities=7% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 146 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~ 146 (330)
.+..+..++...+..+..+......++.+++.+...-+-.++.|+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
No 479
>PHA02047 phage lambda Rz1-like protein
Probab=26.29 E-value=3.7e+02 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 169 DNANALKAQLDQQKNVVNNLVSNTRLLESK 198 (330)
Q Consensus 169 ~~~~~le~qle~~~~~v~~Lk~~l~~Le~K 198 (330)
..++.+..+++..+.++..+..++..++.+
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555444444
No 480
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=26.25 E-value=5.1e+02 Score=23.71 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 104 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 139 (330)
Q Consensus 104 rdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~ 139 (330)
...+..+.++..........-...+.+|...-.+++
T Consensus 103 K~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e 138 (236)
T cd07651 103 KKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKIN 138 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333444444444444444444444444444444333
No 481
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=26.18 E-value=3.1e+02 Score=22.47 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=50.3
Q ss_pred ccccccccCCCcccccCchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 55 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAA 134 (330)
Q Consensus 55 ~~~~~~~~~~~~~~~~Msif~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~ 134 (330)
+|+..+..|.|+ |.+ |+|-|++- +=|.-.||...--+|+.++..+...+....-.--.++++.+.+
T Consensus 46 scpyeisdg~g~-~~g---fkrwwtva----------lcdefdmikee~~emkkdleaankrve~q~ekiflmekkfe~l 111 (122)
T PF05325_consen 46 SCPYEISDGPGR-GCG---FKRWWTVA----------LCDEFDMIKEETIEMKKDLEAANKRVESQAEKIFLMEKKFETL 111 (122)
T ss_pred cCccccccCCCC-Ccc---ceeEEeee----------echhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 566666555555 443 88888653 2345567888888999999999888877666556677777777
Q ss_pred HHHHHHH
Q 020141 135 EQASEDW 141 (330)
Q Consensus 135 ~~~~~~~ 141 (330)
+...+.+
T Consensus 112 ekkyesl 118 (122)
T PF05325_consen 112 EKKYESL 118 (122)
T ss_pred HHHHHHH
Confidence 7665544
No 482
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=26.03 E-value=5.3e+02 Score=23.84 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQAT 117 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~l 117 (330)
-..+-|-+.+.+..-.+..+..
T Consensus 27 l~~a~~KL~Eaeq~~dE~er~~ 48 (205)
T KOG1003|consen 27 LATALQKLEEAEQAADESERGM 48 (205)
T ss_pred HHHHHHHHHHHhhcccHHHHHH
Confidence 3444444444444444444433
No 483
>PRK12704 phosphodiesterase; Provisional
Probab=25.87 E-value=7.9e+02 Score=25.79 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=5.5
Q ss_pred CCCChhhHH
Q 020141 309 FPFRDAEIE 317 (330)
Q Consensus 309 ~~~~~~~~~ 317 (330)
-||+.+|+-
T Consensus 280 ~P~~iee~~ 288 (520)
T PRK12704 280 HPARIEEMV 288 (520)
T ss_pred CCCCHHHHH
Confidence 366666664
No 484
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.85 E-value=9.9e+02 Score=26.91 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHcCCC
Q 020141 275 VDDDLANLKKELSGS 289 (330)
Q Consensus 275 vd~eLa~LKa~l~~~ 289 (330)
|+.+|-.|+.+...+
T Consensus 853 ieq~ls~l~~~~k~~ 867 (970)
T KOG0946|consen 853 IEQKLSNLQEKIKFG 867 (970)
T ss_pred HHHHHHHHHHHhhhh
Confidence 455555555554443
No 485
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=25.72 E-value=4.6e+02 Score=27.59 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 172 ~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
..+..++...+..+.+.+.....|+-|+..+++..+...-+
T Consensus 45 ~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~ 85 (604)
T KOG3564|consen 45 KRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKR 85 (604)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444443333
No 486
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=25.67 E-value=1.9e+02 Score=25.42 Aligned_cols=62 Identities=8% Similarity=0.273 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHH
Q 020141 190 SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADS 254 (330)
Q Consensus 190 ~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~aeA 254 (330)
+-+.+|+..|+.++.++..+......|++.--+.+ +.....+......++.||..++....-
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsE---Naey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGD---QAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcch---hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666555555544444443311111 111345667788888888888877664
No 487
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=25.63 E-value=1e+03 Score=27.10 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 149 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL 149 (330)
.+...+..++..+..+-+....+...+.............-..+|
T Consensus 714 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 758 (1047)
T PRK10246 714 VALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTAL 758 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555556666665555555565566555555555554444443
No 488
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.55 E-value=4.2e+02 Score=22.55 Aligned_cols=95 Identities=11% Similarity=0.232 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 020141 74 FDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 153 (330)
Q Consensus 74 f~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 153 (330)
|.-|.-+.|.++++++.. +-..+...-+.|..+|+. |.++++.+..++++-.+-
T Consensus 30 ~sD~M~vTrr~m~~A~~~-------v~kql~~vs~~l~~tKkh----------LsqRId~vd~klDe~~ei--------- 83 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVAS-------VSKQLEQVSESLSSTKKH----------LSQRIDRVDDKLDEQKEI--------- 83 (126)
T ss_pred hhHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHH---------
Confidence 555556666665555444 333444444444444444 334455444444332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 154 EDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 197 (330)
Q Consensus 154 EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~ 197 (330)
....-.+.......+..+...++.....|..|+..+..++.
T Consensus 84 ---~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 84 ---SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11122223344556666666666677777777776666654
No 489
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=25.53 E-value=3.1e+02 Score=20.97 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 138 SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 138 ~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
..+|+.+-..|+.. |=...-.+.+..+...+.++..+.........|..++..|..++..+-.+.+-|
T Consensus 1 MteLE~qLl~ale~----Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 1 MTELEKQLLSALEE----LQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred CcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 490
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=25.46 E-value=5.6e+02 Score=23.91 Aligned_cols=161 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 020141 83 SYANAILSSFEDPEKILEQAVLEMNDDLVKMR----QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 158 (330)
Q Consensus 83 a~in~~ldk~EDPe~mLeQ~Irdme~~L~kar----~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr 158 (330)
..+...++.......+|..-..++...+.... .....++..-+.+-.+++.+..+-..+..+.+.++ ..+++..
T Consensus 101 ~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~--~~d~i~~ 178 (296)
T PF13949_consen 101 SQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKL--QNDDISK 178 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccHHH
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHH
Q 020141 159 EAL-KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSA 237 (330)
Q Consensus 159 eAL-~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~ 237 (330)
... ..+....+.-.-+..++..+......+..++..=+.-|.+++..-..+................+.. ...+...
T Consensus 179 ~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~--l~~a~~~ 256 (296)
T PF13949_consen 179 LLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQR--LEAAYDA 256 (296)
T ss_dssp HHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHHHHH
Q ss_pred HHHHHHHHHh
Q 020141 238 FEKMEEKVLT 247 (330)
Q Consensus 238 feRmEeki~~ 247 (330)
|..+...+..
T Consensus 257 y~el~~~l~e 266 (296)
T PF13949_consen 257 YKELSSNLEE 266 (296)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhHHH
No 491
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.40 E-value=9.3e+02 Score=26.44 Aligned_cols=166 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 020141 84 YANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKR 163 (330)
Q Consensus 84 ~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~r 163 (330)
.++.+++..+|...-+.+.+...+..+.++...+--.--..+++.-.+...++++..-..++....+.-.+..+ .+..
T Consensus 141 k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~--~l~e 218 (716)
T KOG4593|consen 141 KELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQA--SLEE 218 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 020141 164 RKSYADNANALKAQLDQQ---KNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEK 240 (330)
Q Consensus 164 k~~~e~~~~~le~qle~~---~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feR 240 (330)
...+..+.+....++... +.....++..|+.++.-.....+.++.++.-...-.+-.-+.+-..+ ..+-...|+.
T Consensus 219 ~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~--Lqskl~~~~~ 296 (716)
T KOG4593|consen 219 RADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEG--LQSKLGRLEK 296 (716)
T ss_pred HHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHH
Q ss_pred HHHHHHhHHHHHH
Q 020141 241 MEEKVLTMESQAD 253 (330)
Q Consensus 241 mEeki~~~EA~ae 253 (330)
++.+...+|-+..
T Consensus 297 l~~~~~~LELeN~ 309 (716)
T KOG4593|consen 297 LQSTLLGLELENE 309 (716)
T ss_pred HHHHHhhHHHHHH
No 492
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=25.40 E-value=3e+02 Score=21.93 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR---SKKDT 208 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k---~k~~~ 208 (330)
++.+.+++......+.+....+..|+++...+. ++..+
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~Rt 43 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERT 43 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=25.30 E-value=4.7e+02 Score=22.93 Aligned_cols=106 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 149 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDP---e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL 149 (330)
+|+.+..++..+-..+.+.+++- ..-.+....+.+..+.+++.....++...+.-- -...+..+.+....+..-+
T Consensus 39 l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a--~~~~~~~~~~A~~ea~~~~ 116 (173)
T PRK13453 39 AWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQA--RQQQEQIIHEANVRANGMI 116 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 150 QKGEEDLAREALKRRKSYADNANALKAQLDQ 180 (330)
Q Consensus 150 ~~G~EdLAreAL~rk~~~e~~~~~le~qle~ 180 (330)
...+.++..+--.-...+..++..+--.+..
T Consensus 117 ~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~ 147 (173)
T PRK13453 117 ETAQSEINSQKERAIADINNQVSELSVLIAS 147 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.25 E-value=9e+02 Score=26.25 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHH
Q 020141 94 DP---EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE----EDLAREALKRRKS 166 (330)
Q Consensus 94 DP---e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~----EdLAreAL~rk~~ 166 (330)
|| ..+++..+...-++-.+.+...+.- ...=++.++.+++.+....+.+...-.++.+ +.-|...+.+..+
T Consensus 238 dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~--a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~ 315 (726)
T PRK09841 238 DPQLITRILNSIANNYLQQNIARQAAQDSQ--SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVN 315 (726)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020141 167 YADNANALKAQLDQQK--------------NVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEML 226 (330)
Q Consensus 167 ~e~~~~~le~qle~~~--------------~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~ 226 (330)
++.++..++.+...+. .+...|+.++..++.++..+-.....+..-.+.+++.+.+-..+
T Consensus 316 l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 316 VDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.24 E-value=2.7e+02 Score=20.17 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 159 EALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 159 eAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
.|-.=...-...+..|+..+..+....+.|...+..|+..+..++.+
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 496
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=25.24 E-value=9.7e+02 Score=26.62 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 020141 81 VKSYANAILSSFEDPEKILEQAVLEMND----------DLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL--- 147 (330)
Q Consensus 81 ira~in~~ldk~EDPe~mLeQ~Irdme~----------~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~--- 147 (330)
+...++..+.++.|=...|++.+..+.+ -+.+....+-.++.....+.. ..............
T Consensus 500 ~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD----v~s~~sEIK~~f~~~ss 575 (769)
T PF05911_consen 500 ISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD----VSSMRSEIKKNFDGDSS 575 (769)
T ss_pred hcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH----HHHHHHHHHHhhhhccc
Q ss_pred ------HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 148 ------ALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATK 221 (330)
Q Consensus 148 ------AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~~ 221 (330)
........--.....+...++..-..++..+.....+++.++.++.+++.+|.+++.++..++-....+..+..
T Consensus 576 ~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~ 655 (769)
T PF05911_consen 576 SEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLK 655 (769)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhcCCCCCcHHHH---HHHHHHHHHhHHHHHH
Q 020141 222 VSEMLGNVNTSSALSA---FEKMEEKVLTMESQAD 253 (330)
Q Consensus 222 ~~~~~~~~~~~sa~~~---feRmEeki~~~EA~ae 253 (330)
........-....... +..+..+|..++.+.+
T Consensus 656 ~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 656 AMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=25.20 E-value=1.1e+03 Score=27.23 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH------------HHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLA------------REALKRR 164 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLA------------reAL~rk 164 (330)
.+++--||-++.++.+--..+-+....-..++.++..++.++.+|..-|..|-.--+|--| ++.+...
T Consensus 180 Adle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs 259 (1195)
T KOG4643|consen 180 ADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDS 259 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 165 KSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI--QEARSKKDTLKARAQSAKTATKV 222 (330)
Q Consensus 165 ~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki--~e~k~k~~~LkAr~~~AkAq~~~ 222 (330)
.-|.+++..++..-.-+-..-+-|+++|+.++.+- ..+..++=++++...--+.+..+
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdt 319 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDT 319 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhh
No 498
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=25.04 E-value=8.4e+02 Score=25.81 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKC-KAAEQA---SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQ 180 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~-~~~~~~---~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~ 180 (330)
++...+..+..-+-..-+.+-+.++.+ ++++.. +..+.+-=..||..+.+-..+..-.++..+.++...+...+..
T Consensus 197 ~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~ 276 (531)
T PF15450_consen 197 FLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQ 276 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 020141 181 QKNVVNNLVSNTRLL---------------ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKV 245 (330)
Q Consensus 181 ~~~~v~~Lk~~l~~L---------------e~Ki~e~k~k~~~LkAr~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki 245 (330)
++..+......|... +.++.++..+........+.+ ++.+.-.+...++-++++-
T Consensus 277 Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~a----------gkla~Qe~~~~ld~LqEks 346 (531)
T PF15450_consen 277 LTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLA----------GKLAQQETQSELDLLQEKS 346 (531)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHh----------hhhhHhhhhhHHHHHHHHH
Q ss_pred HhHHHHHHHhhcccCCChhHHHhhh
Q 020141 246 LTMESQADSLNQLTTDDLEGKFALL 270 (330)
Q Consensus 246 ~~~EA~aeA~~eL~~~~Ld~k~~~l 270 (330)
.-++.....+.. .-.||+++|..+
T Consensus 347 qile~sv~~l~~-~lkDLd~~~~aL 370 (531)
T PF15450_consen 347 QILEDSVAELMR-QLKDLDDHILAL 370 (531)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHH
No 499
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.03 E-value=3.5e+02 Score=21.43 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 119 QVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESK 198 (330)
Q Consensus 119 ~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~K 198 (330)
.+-+..+++...+..++..+...-++-... .+.-.+.+.+...-..|.+.+++......+|+.--.++..+
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~---------~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~r 75 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR---------DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRR 75 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 020141 199 IQEARSKKDTLKAR 212 (330)
Q Consensus 199 i~e~k~k~~~LkAr 212 (330)
|..+-.....+..|
T Consensus 76 L~~a~e~Ir~vL~r 89 (89)
T PF13747_consen 76 LDSAIETIRAVLDR 89 (89)
T ss_pred HHHHHHHHHHHhcC
No 500
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.93 E-value=2.7e+02 Score=22.82 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 020141 152 GEEDLAREALKRRKSYADNANALKAQLDQ----QKNVVNNLVSNTR 193 (330)
Q Consensus 152 G~EdLAreAL~rk~~~e~~~~~le~qle~----~~~~v~~Lk~~l~ 193 (330)
|.-+-|.|-.-=++.-.+++..|+..+.+ ++..++.++..|.
T Consensus 55 ~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 55 GKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!