Query 020141
Match_columns 330
No_of_seqs 157 out of 817
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 97.1 0.039 1.3E-06 54.2 19.2 121 73-209 349-469 (471)
2 3frt_A Charged multivesicular 97.0 0.0041 1.4E-07 56.3 10.7 40 123-162 22-61 (218)
3 4abm_A Charged multivesicular 97.0 0.012 4.2E-07 45.0 11.5 74 114-188 5-78 (79)
4 3na7_A HP0958; flagellar bioge 96.3 0.66 2.3E-05 42.3 21.8 144 97-244 35-187 (256)
5 2gd5_A Charged multivesicular 95.9 0.024 8.3E-07 49.4 8.2 40 125-164 24-67 (179)
6 2fxo_A Myosin heavy chain, car 95.9 0.58 2E-05 38.5 17.5 112 99-210 11-124 (129)
7 3na7_A HP0958; flagellar bioge 95.3 1.6 5.5E-05 39.7 19.8 121 83-213 14-134 (256)
8 1i84_S Smooth muscle myosin he 94.5 0.23 8E-06 54.8 12.2 108 101-209 857-967 (1184)
9 1i84_S Smooth muscle myosin he 94.2 0.091 3.1E-06 58.0 8.3 12 102-113 865-876 (1184)
10 3oja_B Anopheles plasmodium-re 93.5 1.3 4.4E-05 44.3 14.8 41 106-146 454-494 (597)
11 3vkg_A Dynein heavy chain, cyt 93.4 7.3 0.00025 47.4 22.7 82 167-253 2019-2101(3245)
12 3oja_B Anopheles plasmodium-re 92.4 3 0.0001 41.6 15.5 29 182-210 536-564 (597)
13 3vkg_A Dynein heavy chain, cyt 90.7 16 0.00055 44.5 21.2 59 158-216 1990-2054(3245)
14 3o0z_A RHO-associated protein 89.5 9.5 0.00033 32.9 18.0 114 94-219 6-119 (168)
15 3bas_A Myosin heavy chain, str 89.0 6.4 0.00022 30.2 12.4 46 99-144 12-57 (89)
16 3mq7_A Bone marrow stromal ant 88.8 8.3 0.00029 31.3 13.7 84 125-216 28-111 (121)
17 1deq_A Fibrinogen (alpha chain 88.4 7.4 0.00025 37.7 13.3 70 89-158 101-170 (390)
18 3ajw_A Flagellar FLIJ protein; 88.4 9 0.00031 31.1 13.5 105 99-209 10-114 (150)
19 3ghg_A Fibrinogen alpha chain; 88.3 4.8 0.00017 40.5 12.3 95 103-206 59-154 (562)
20 2efr_A General control protein 85.4 16 0.00055 31.0 19.8 45 163-207 71-115 (155)
21 3mq9_A Bone marrow stromal ant 85.3 16 0.00055 35.3 14.3 47 166-215 422-468 (471)
22 2dfs_A Myosin-5A; myosin-V, in 83.7 22 0.00077 38.8 15.8 28 117-144 916-943 (1080)
23 4fm3_A Uncharacterized hypothe 83.7 14 0.00049 29.0 10.6 63 137-200 33-95 (98)
24 3ghg_A Fibrinogen alpha chain; 83.6 22 0.00077 35.8 14.3 21 179-199 134-154 (562)
25 3u59_A Tropomyosin beta chain; 82.9 15 0.00051 28.6 13.7 75 127-206 7-81 (101)
26 3u1c_A Tropomyosin alpha-1 cha 82.2 16 0.00055 28.5 13.7 71 127-202 7-77 (101)
27 3ol1_A Vimentin; structural ge 81.8 19 0.00064 29.0 15.2 92 96-213 15-106 (119)
28 3iox_A AGI/II, PA; alpha helix 81.8 45 0.0015 33.3 16.0 94 105-209 6-99 (497)
29 2v71_A Nuclear distribution pr 80.4 29 0.001 30.3 20.0 32 101-132 17-48 (189)
30 2jee_A YIIU; FTSZ, septum, coi 80.3 17 0.00059 27.6 9.6 59 93-151 19-77 (81)
31 3oja_A Leucine-rich immune mol 80.0 45 0.0015 32.3 17.9 42 112-153 357-398 (487)
32 1m1j_B Fibrinogen beta chain; 79.6 46 0.0016 33.0 15.1 42 99-140 98-139 (464)
33 1l8d_A DNA double-strand break 79.6 9.4 0.00032 29.8 8.4 39 103-141 5-43 (112)
34 1ic2_A Tropomyosin alpha chain 79.1 18 0.0006 27.0 11.7 70 127-201 4-73 (81)
35 3frt_A Charged multivesicular 78.4 17 0.00059 32.4 10.6 63 94-166 7-69 (218)
36 1deq_A Fibrinogen (alpha chain 77.5 54 0.0018 31.7 14.3 40 167-206 118-157 (390)
37 1m1j_C Fibrinogen gamma chain; 76.7 58 0.002 31.7 15.2 49 162-210 84-132 (409)
38 2v4h_A NF-kappa-B essential mo 76.7 27 0.00093 27.9 11.7 43 162-204 62-104 (110)
39 2v71_A Nuclear distribution pr 75.4 41 0.0014 29.4 21.7 107 86-207 20-126 (189)
40 3efg_A Protein SLYX homolog; x 69.4 22 0.00074 26.6 7.6 49 167-215 12-60 (78)
41 3hnw_A Uncharacterized protein 69.3 46 0.0016 27.5 10.4 34 170-203 97-130 (138)
42 3ghg_B Fibrinogen beta chain; 69.2 74 0.0025 31.5 13.4 39 99-137 93-131 (461)
43 1jcd_A Major outer membrane li 68.9 26 0.00089 24.3 7.9 28 170-197 5-32 (52)
44 3m91_A Proteasome-associated A 68.3 27 0.00091 24.2 7.2 42 168-209 8-49 (51)
45 3mq7_A Bone marrow stromal ant 68.1 47 0.0016 26.9 13.6 40 163-202 72-111 (121)
46 2i1j_A Moesin; FERM, coiled-co 66.6 6.3 0.00021 40.1 5.4 25 264-288 504-529 (575)
47 3oja_A Leucine-rich immune mol 66.2 97 0.0033 29.9 14.9 8 73-80 303-310 (487)
48 3ghg_C Fibrinogen gamma chain; 66.2 32 0.0011 33.6 10.1 45 160-211 89-133 (411)
49 2efr_A General control protein 65.4 62 0.0021 27.3 22.3 26 92-117 33-58 (155)
50 3ol1_A Vimentin; structural ge 63.7 55 0.0019 26.1 15.5 38 98-135 38-75 (119)
51 3s4r_A Vimentin; alpha-helix, 63.4 48 0.0017 25.4 12.9 82 110-205 11-92 (93)
52 1zbt_A RF-1, peptide chain rel 62.2 29 0.00098 33.5 8.7 31 69-100 11-41 (371)
53 1ic2_A Tropomyosin alpha chain 61.7 47 0.0016 24.6 9.8 45 168-212 19-63 (81)
54 2xdj_A Uncharacterized protein 61.0 51 0.0018 24.9 8.8 36 172-207 23-58 (83)
55 1m1j_C Fibrinogen gamma chain; 60.5 25 0.00086 34.3 8.1 20 99-118 36-55 (409)
56 3hnw_A Uncharacterized protein 59.5 73 0.0025 26.2 14.2 17 73-89 29-45 (138)
57 3hfe_A Potassium voltage-gated 59.3 13 0.00044 23.1 3.7 25 231-255 5-29 (31)
58 2b9c_A Striated-muscle alpha t 57.5 83 0.0028 26.2 16.4 96 110-210 26-121 (147)
59 1lwu_C Fibrinogen gamma chain; 55.4 36 0.0012 32.2 8.0 45 166-210 9-53 (323)
60 1gd2_E Transcription factor PA 55.1 23 0.00079 26.0 5.3 32 168-199 35-66 (70)
61 3efg_A Protein SLYX homolog; x 53.2 40 0.0014 25.1 6.5 47 163-209 15-61 (78)
62 1cii_A Colicin IA; bacteriocin 52.7 1.9E+02 0.0064 28.9 20.7 60 231-290 468-541 (602)
63 2ke4_A CDC42-interacting prote 52.2 81 0.0028 24.5 9.6 47 158-204 38-90 (98)
64 3mud_A DNA repair protein XRCC 50.7 63 0.0021 27.9 8.1 49 90-138 117-165 (175)
65 4e61_A Protein BIM1; EB1-like 50.0 68 0.0023 25.5 7.6 49 170-218 5-53 (106)
66 4dk0_A Putative MACA; alpha-ha 49.9 23 0.00078 32.8 5.8 18 101-118 70-87 (369)
67 3o0z_A RHO-associated protein 49.7 1.2E+02 0.0042 25.9 17.3 48 162-209 90-137 (168)
68 3nmd_A CGMP dependent protein 49.2 61 0.0021 24.0 6.7 32 178-209 35-66 (72)
69 3qne_A Seryl-tRNA synthetase, 48.6 1.1E+02 0.0036 30.6 10.6 30 124-153 42-71 (485)
70 1m1j_A Fibrinogen alpha subuni 48.0 1.2E+02 0.0041 30.1 10.5 54 96-149 106-159 (491)
71 2yy0_A C-MYC-binding protein; 47.6 42 0.0014 23.2 5.3 25 186-210 22-46 (53)
72 3a7p_A Autophagy protein 16; c 47.3 1.3E+02 0.0044 25.4 9.8 46 181-226 101-148 (152)
73 1m1j_A Fibrinogen alpha subuni 46.4 2.3E+02 0.0079 28.1 13.6 33 170-202 119-151 (491)
74 3fpp_A Macrolide-specific effl 46.1 47 0.0016 30.3 7.2 21 100-120 68-88 (341)
75 2xdj_A Uncharacterized protein 45.7 95 0.0032 23.4 9.1 39 168-206 26-64 (83)
76 1fxk_C Protein (prefoldin); ar 45.5 1.1E+02 0.0039 24.2 10.4 36 168-203 94-129 (133)
77 1lwu_C Fibrinogen gamma chain; 45.3 70 0.0024 30.2 8.3 37 173-209 9-45 (323)
78 3q8t_A Beclin-1; autophagy, AT 45.3 1E+02 0.0035 23.7 13.9 25 112-136 15-39 (96)
79 2yy0_A C-MYC-binding protein; 44.4 31 0.0011 23.9 4.3 30 170-199 20-49 (53)
80 2dq0_A Seryl-tRNA synthetase; 43.9 1.4E+02 0.0049 29.1 10.7 33 121-153 37-69 (455)
81 3m9b_A Proteasome-associated A 42.7 30 0.001 31.6 5.1 42 169-210 54-95 (251)
82 2v66_B Nuclear distribution pr 42.5 1.3E+02 0.0044 24.0 13.3 69 124-207 5-73 (111)
83 1gd2_E Transcription factor PA 42.1 52 0.0018 24.1 5.4 37 101-137 29-65 (70)
84 2no2_A HIP-I, huntingtin-inter 42.0 1.3E+02 0.0043 23.7 15.4 31 105-135 12-42 (107)
85 1gmj_A ATPase inhibitor; coile 40.9 1.2E+02 0.004 23.1 8.2 26 178-203 53-78 (84)
86 2l5g_A GPS2 protein, G protein 40.4 73 0.0025 20.6 5.2 28 183-210 8-35 (38)
87 1g6u_A Domain swapped dimer; d 39.6 79 0.0027 20.8 6.1 27 184-210 21-47 (48)
88 3fpp_A Macrolide-specific effl 39.4 38 0.0013 30.9 5.5 29 105-133 66-94 (341)
89 3trt_A Vimentin; cytoskeleton, 39.4 1.1E+02 0.0036 22.1 9.3 40 170-209 36-75 (77)
90 3rkg_A Magnesium transporter M 38.8 1.4E+02 0.0047 27.2 9.0 107 96-203 129-247 (261)
91 3w03_C DNA repair protein XRCC 38.5 92 0.0032 27.0 7.3 51 89-139 133-183 (184)
92 1fzc_C Fibrin; blood coagulati 36.2 22 0.00074 33.6 3.2 41 162-209 4-44 (319)
93 1ci6_A Transcription factor AT 36.0 1.1E+02 0.0037 21.6 6.2 26 184-209 31-56 (63)
94 3aco_A Pacsin2, protein kinase 35.4 2.6E+02 0.009 25.6 12.8 12 37-48 21-33 (350)
95 2wt7_B Transcription factor MA 35.0 99 0.0034 23.8 6.2 34 173-206 52-85 (90)
96 2lf0_A Uncharacterized protein 34.7 98 0.0034 25.0 6.3 51 127-177 8-58 (123)
97 1wle_A Seryl-tRNA synthetase; 34.7 2.5E+02 0.0087 27.8 10.9 20 187-206 127-146 (501)
98 3bvo_A CO-chaperone protein HS 33.2 2.4E+02 0.0082 24.4 10.2 49 127-175 153-201 (207)
99 2wt7_B Transcription factor MA 32.5 1.1E+02 0.0037 23.6 6.0 37 164-200 50-86 (90)
100 3i00_A HIP-I, huntingtin-inter 32.4 1.9E+02 0.0067 23.1 11.5 20 125-144 43-62 (120)
101 3swk_A Vimentin; cytoskeleton, 32.4 1.6E+02 0.0054 22.1 11.2 80 112-210 4-83 (86)
102 1hji_B NUN-protein; bacterioph 32.3 45 0.0016 19.3 2.9 18 135-152 9-26 (26)
103 2i1j_A Moesin; FERM, coiled-co 31.5 71 0.0024 32.3 6.3 17 73-89 276-292 (575)
104 3nmd_A CGMP dependent protein 31.0 1.3E+02 0.0045 22.2 6.0 24 170-193 41-64 (72)
105 2k48_A Nucleoprotein; viral pr 31.0 2E+02 0.0067 22.8 8.5 49 164-212 37-104 (107)
106 2l5g_B Putative uncharacterize 30.6 1.2E+02 0.0041 20.1 5.5 27 184-210 10-36 (42)
107 3cvf_A Homer-3, homer protein 30.4 1.2E+02 0.004 22.8 5.8 34 178-211 15-48 (79)
108 1m1j_B Fibrinogen beta chain; 29.6 4.2E+02 0.014 26.1 14.8 48 97-144 103-150 (464)
109 4dk0_A Putative MACA; alpha-ha 29.5 65 0.0022 29.6 5.3 30 105-134 67-96 (369)
110 3uo3_A J-type CO-chaperone JAC 29.2 2.6E+02 0.009 23.6 9.8 72 93-174 99-170 (181)
111 1kd8_B GABH BLL, GCN4 acid bas 29.0 1.2E+02 0.0039 19.4 5.1 9 168-176 7-15 (36)
112 1ci6_A Transcription factor AT 28.1 1.6E+02 0.0054 20.7 6.3 35 170-204 24-58 (63)
113 2gd5_A Charged multivesicular 28.0 2.7E+02 0.0091 23.4 11.7 43 94-136 7-49 (179)
114 1fxk_A Prefoldin; archaeal pro 28.0 1.9E+02 0.0065 21.7 7.1 35 105-139 5-39 (107)
115 1vcs_A Vesicle transport throu 28.0 2E+02 0.007 22.0 7.4 44 173-216 42-93 (102)
116 2zqm_A Prefoldin beta subunit 27.9 2E+02 0.0069 21.9 10.6 32 105-136 10-41 (117)
117 2ocy_A RAB guanine nucleotide 27.9 2.7E+02 0.0092 23.4 15.8 19 105-123 17-35 (154)
118 2oqq_A Transcription factor HY 27.7 1.3E+02 0.0046 19.8 5.4 27 185-211 5-31 (42)
119 3c9i_A Tail needle protein GP2 27.4 3.3E+02 0.011 24.2 11.2 65 128-211 83-147 (242)
120 2jo8_A Serine/threonine-protei 27.1 34 0.0012 23.7 2.1 15 313-327 23-37 (51)
121 3lss_A Seryl-tRNA synthetase; 27.1 4.3E+02 0.015 26.1 11.0 25 185-209 113-137 (484)
122 1fzc_C Fibrin; blood coagulati 26.6 40 0.0014 31.8 3.2 27 183-209 11-37 (319)
123 1kd8_A GABH AIV, GCN4 acid bas 26.5 1.2E+02 0.004 19.4 4.3 23 167-189 6-28 (36)
124 3lay_A Zinc resistance-associa 26.5 3E+02 0.01 23.4 10.7 17 192-208 115-131 (175)
125 1f5n_A Interferon-induced guan 26.5 5.1E+02 0.017 26.1 12.9 6 74-79 411-416 (592)
126 2fxo_A Myosin heavy chain, car 26.4 2.5E+02 0.0084 22.4 16.4 39 106-144 32-70 (129)
127 3um3_B Charged multivesicular 26.1 2.4E+02 0.0081 22.1 8.6 28 229-256 3-30 (104)
128 4fla_A Regulation of nuclear P 26.0 2.8E+02 0.0097 23.0 12.4 42 170-211 87-128 (152)
129 3ni0_A Bone marrow stromal ant 26.0 2.3E+02 0.0079 22.0 9.2 23 199-221 69-91 (99)
130 3trt_A Vimentin; cytoskeleton, 26.0 1.8E+02 0.0062 20.8 10.3 17 184-200 57-73 (77)
131 3t97_C Nuclear pore glycoprote 26.0 1.8E+02 0.0062 20.8 6.0 44 100-143 4-47 (64)
132 1nov_D Nodamura virus coat pro 25.7 46 0.0016 22.2 2.4 31 72-103 2-32 (44)
133 1fxk_A Prefoldin; archaeal pro 25.7 2.1E+02 0.0073 21.4 9.8 35 171-205 67-101 (107)
134 1fmh_A General control protein 25.6 1.2E+02 0.0041 18.5 4.8 28 110-137 3-30 (33)
135 3abh_A Pacsin2, protein kinase 25.5 3.6E+02 0.012 24.0 20.2 45 104-148 139-183 (312)
136 3haj_A Human pacsin2 F-BAR; pa 25.4 4.7E+02 0.016 25.3 21.7 43 106-148 134-176 (486)
137 2f1m_A Acriflavine resistance 25.1 1.7E+02 0.0057 25.6 7.1 72 127-207 58-129 (277)
138 3htk_A Structural maintenance 24.9 1.7E+02 0.0057 19.9 8.0 50 96-145 7-56 (60)
139 2yko_A LINE-1 ORF1P; RNA-bindi 24.9 1.7E+02 0.0057 26.4 6.8 42 164-205 8-49 (233)
140 1nlw_A MAD protein, MAX dimeri 24.6 2.1E+02 0.0072 21.1 6.4 25 186-210 50-74 (80)
141 2pms_C Pneumococcal surface pr 24.6 2.2E+02 0.0075 23.2 6.9 36 126-161 10-45 (125)
142 1y4c_A Maltose binding protein 24.4 4.9E+02 0.017 25.2 12.0 44 73-116 335-378 (494)
143 2z2q_B Coat protein gamma; wil 24.2 50 0.0017 22.0 2.4 32 72-104 2-33 (44)
144 3i2w_A Syndapin, LD46328P; EFC 24.2 3.7E+02 0.013 23.7 14.0 18 235-252 249-266 (290)
145 1fxk_C Protein (prefoldin); ar 24.0 2.6E+02 0.009 21.9 8.1 39 104-142 4-42 (133)
146 1gk4_A Vimentin; intermediate 23.6 2.2E+02 0.0077 21.0 9.7 23 99-121 31-53 (84)
147 4fi5_A Nucleoprotein; structur 22.9 2.9E+02 0.01 22.0 8.3 22 190-211 69-90 (113)
148 3vmx_A Voltage-gated hydrogen 22.4 1.9E+02 0.0065 19.7 6.6 36 168-203 3-38 (48)
149 3ibp_A Chromosome partition pr 22.3 4.8E+02 0.016 24.3 10.5 111 177-288 4-122 (302)
150 4etp_A Kinesin-like protein KA 22.2 2.8E+02 0.0097 26.5 8.5 39 168-206 9-47 (403)
151 1x79_B RAB GTPase binding effe 21.9 3E+02 0.01 21.8 13.0 38 160-197 36-73 (112)
152 1avy_A Fibritin, gpwac M; bact 21.8 2.4E+02 0.0083 20.7 6.0 33 170-202 9-41 (74)
153 2e7s_A RAB guanine nucleotide 21.7 1.3E+02 0.0045 24.8 5.0 16 173-188 107-122 (135)
154 3jsv_C NF-kappa-B essential mo 21.6 2.8E+02 0.0097 21.4 7.2 46 170-215 3-51 (94)
155 1x8y_A Lamin A/C; structural p 21.5 2.5E+02 0.0087 20.8 8.5 18 162-179 63-80 (86)
156 2w83_C C-JUN-amino-terminal ki 21.5 1.9E+02 0.0067 21.5 5.4 32 171-202 39-70 (77)
157 2xz3_A Maltose ABC transporter 21.3 5.2E+02 0.018 24.3 10.8 46 150-195 374-419 (463)
158 3q8t_A Beclin-1; autophagy, AT 21.0 2.8E+02 0.0096 21.1 15.4 44 98-141 8-51 (96)
159 2ovc_A Potassium voltage-gated 20.8 86 0.0029 19.7 2.9 25 232-256 6-30 (33)
160 1nkp_B MAX protein, MYC proto- 20.5 1.8E+02 0.0061 21.2 5.3 18 182-199 60-77 (83)
161 1l8d_A DNA double-strand break 20.3 2.9E+02 0.0098 21.0 12.8 33 167-199 69-101 (112)
162 3u0c_A Invasin IPAB, 62 kDa an 20.2 4.1E+02 0.014 22.8 9.7 12 80-91 56-67 (201)
163 3bas_A Myosin heavy chain, str 20.2 2.8E+02 0.0094 20.7 12.2 45 168-212 13-57 (89)
164 2zdi_C Prefoldin subunit alpha 20.2 2.4E+02 0.0082 22.9 6.6 41 102-142 10-53 (151)
165 2z5i_A TM, general control pro 20.1 2.1E+02 0.0073 19.4 6.8 18 166-183 9-26 (52)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=97.07 E-value=0.039 Score=54.24 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020141 73 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG 152 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G 152 (330)
-+..+.+++...+..++..-.+|+..|+....++++.|.+.+... +..--...+++++.++++...+.+.+|-.|-.
T Consensus 349 ~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 425 (471)
T 3mq9_A 349 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANH-- 425 (471)
T ss_dssp THHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch--
Confidence 456788888888999998888999999999999999998876654 67777888999999999999999998877632
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 153 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 153 ~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
....-..+++..+. +....+..++..+.++.++|++.+.+...+
T Consensus 426 ------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 426 ------TVMALMASLDAEKA-------QGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp ------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222223333333 233345555555555555555555544443
No 2
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=97.02 E-value=0.0041 Score=56.30 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 020141 123 SQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 162 (330)
Q Consensus 123 ~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~ 162 (330)
..+.|.+++..++.+-.+.......|.++|+-+-||-.+.
T Consensus 22 ~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAk 61 (218)
T 3frt_A 22 EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAK 61 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456677777888888888889999999999887775533
No 3
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=96.99 E-value=0.012 Score=44.98 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 114 RQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNL 188 (330)
Q Consensus 114 r~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~L 188 (330)
+.++..+......++++...++..++.-...|+.++. ++-.-|..||.+|+.||.++..+.+++.+++.++..+
T Consensus 5 ~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~-knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 5 QEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGT-KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666677788888888888888899999884 5567999999999999999999999999888887765
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.26 E-value=0.66 Score=42.29 Aligned_cols=144 Identities=8% Similarity=0.083 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKA 176 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ 176 (330)
.-|+..+..++..+..++..+..+-...++++..+......+.+++.+-.. ++..+|=-| ...+...+...+..++.
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-v~~~kE~~a--L~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-IKSERELRS--LNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSSHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 445666666777777777777777777777777777777777777776643 344443222 22344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 020141 177 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA---------KTATKVSEMLGNVNTSSALSAFEKMEEK 244 (330)
Q Consensus 177 qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A---------kAq~~~~~~~~~~~~~sa~~~feRmEek 244 (330)
.+..+...++.++..+..++.++.+.+......++..... ....+-.....++ .......|+|+..+
T Consensus 112 eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i-~~~lL~~Yerir~~ 187 (256)
T 3na7_A 112 EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKT-EPKIYSFYERIRRW 187 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Confidence 5555555555555555555555555555444444432222 1122222333344 23456667776654
No 5
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=95.92 E-value=0.024 Score=49.37 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH----HHHHHHHHH
Q 020141 125 KRLENKCKAAEQASEDWYRKAQLALQKGEED----LAREALKRR 164 (330)
Q Consensus 125 k~le~k~~~~~~~~~~~e~rA~~AL~~G~Ed----LAreAL~rk 164 (330)
+.|.+++..++.+-.+.......|.++|+.+ +|++++..+
T Consensus 24 r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~r 67 (179)
T 2gd5_A 24 RVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSR 67 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444555555666666666678888899988 455554444
No 6
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.91 E-value=0.58 Score=38.54 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQL--ALQKGEEDLAREALKRRKSYADNANALKA 176 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~--AL~~G~EdLAreAL~rk~~~e~~~~~le~ 176 (330)
-+-.+..+++.+.+++..+.......+.++.++..+..+..++..+... .+-..-++.-.....++..++..+..+..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999999988888888887665443 23333356666677888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 177 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 177 qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
.++........|...-.+++..+.+++..++.+-
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888887764
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.34 E-value=1.6 Score=39.70 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=81.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 020141 83 SYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALK 162 (330)
Q Consensus 83 a~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~ 162 (330)
..++.-++.++.-..-|-..|.++++.+..++..+..+......++.++..++..+.....++...-.+-. -++
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~--~v~---- 87 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS--EIK---- 87 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCS----
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccC----
Confidence 34555666766655667788889999999999999999888888888888888888888877766533211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 213 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 213 (330)
-...+..|..+++.++..+..++..+..+..+++..+.....+....
T Consensus 88 ----~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 88 ----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp ----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445566666666666666666666666666666555555554443
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.45 E-value=0.23 Score=54.76 Aligned_cols=108 Identities=11% Similarity=0.197 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 101 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ---KGEEDLAREALKRRKSYADNANALKAQ 177 (330)
Q Consensus 101 Q~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~---~G~EdLAreAL~rk~~~e~~~~~le~q 177 (330)
..|+++++.+.+++..+..+......++.++..++.+..++......... .-.+.+ .....++..++.++..++.+
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l-~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR-VRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666655555555555555555555554432221100 000111 11223334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 178 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 178 le~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
++..+.....+...+..++.++.+++.+++.+
T Consensus 936 lee~ee~l~el~~e~~~le~el~~L~~eleel 967 (1184)
T 1i84_S 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967 (1184)
T ss_dssp HHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.21 E-value=0.091 Score=57.99 Aligned_cols=12 Identities=8% Similarity=0.075 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKM 113 (330)
Q Consensus 102 ~Irdme~~L~ka 113 (330)
.+.+++..+..+
T Consensus 865 eL~el~~~L~~l 876 (1184)
T 1i84_S 865 ELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.55 E-value=1.3 Score=44.33 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 106 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQ 146 (330)
Q Consensus 106 me~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~ 146 (330)
+++++.+.+..+..+.....+.++.+...+.+++++.+...
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 34456666666666666666666666666666665544433
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.44 E-value=7.3 Score=47.37 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCcHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTAT-KVSEMLGNVNTSSALSAFEKMEEKV 245 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq~-~~~~~~~~~~~~sa~~~feRmEeki 245 (330)
++.++...+..+...+..+..+...+..|+.+++++..+++.|+......+.+- +....+++ ..+.=.|+.+.+
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~g-----L~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDN-----LNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhccccHHHHH
Confidence 344444444555555555555555555555555555555555555444332221 12222233 234556777777
Q ss_pred HhHHHHHH
Q 020141 246 LTMESQAD 253 (330)
Q Consensus 246 ~~~EA~ae 253 (330)
...+.+..
T Consensus 2094 ~~l~~~~~ 2101 (3245)
T 3vkg_A 2094 ENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665544
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.38 E-value=3 Score=41.64 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 182 KNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 182 ~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
....+.++....+++.++++.+.+...++
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 33333334444444444444444444444
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.69 E-value=16 Score=44.51 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 158 REALKRRKSYADNANA------LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 158 reAL~rk~~~e~~~~~------le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~A 216 (330)
.++..++..+++.++. ++..++.++......+..+.+.+.+|.++..++..|++....+
T Consensus 1990 ~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 1990 KEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444333 3345555555555555555555555555555555555554443
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.54 E-value=9.5 Score=32.87 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANA 173 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~ 173 (330)
|-...|+-.|.|+.+.|..--.+.++..-....+...+..++..+.++.++... .-..+..++..+..
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~------------L~~~k~~Leke~~~ 73 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRI------------LENSKSQTDKDYYQ 73 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 444556667778887777766666666666666666666666666666665544 22334556778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 174 LKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTA 219 (330)
Q Consensus 174 le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkAq 219 (330)
|+.+|++-...-.....-+.+|+.+|..+....+.++.+...+.+.
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e 119 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE 119 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888887766543
No 15
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=89.03 E-value=6.4 Score=30.18 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
-+-.+..+++.+.+++..+.......+.++.++..+..+..++..+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999998888888888777
No 16
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.82 E-value=8.3 Score=31.26 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 125 KRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 204 (330)
Q Consensus 125 k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~ 204 (330)
..|++++.+.+.-..+|+.+|-.+-+.= .+| +..|. .....-+.++..++..+..|...|++...+++.++.
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV-~tL-~~SL~------~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTV-MAL-MASLD------AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777776653221 111 11222 211111344555666666666677777777777777
Q ss_pred HHHHHHHHHHHH
Q 020141 205 KKDTLKARAQSA 216 (330)
Q Consensus 205 k~~~LkAr~~~A 216 (330)
.-..+..|....
T Consensus 100 ~~~~~~~r~~~~ 111 (121)
T 3mq7_A 100 ENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHC--
T ss_pred hchhhhhHhhhc
Confidence 766666654443
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.38 E-value=7.4 Score=37.65 Aligned_cols=70 Identities=6% Similarity=0.129 Sum_probs=57.7
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 020141 89 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAR 158 (330)
Q Consensus 89 ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAr 158 (330)
+..+.|=+..+.|+-.|++..|.-++..|...+.+-+.|+.-++.+..+|.++|..+..++..=.-..++
T Consensus 101 ~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~ 170 (390)
T 1deq_A 101 FAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSR 170 (390)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 3344566788999999999999999999999999999999999999999999999997766654444444
No 18
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=88.37 E-value=9 Score=31.11 Aligned_cols=105 Identities=11% Similarity=0.141 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQL 178 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~ql 178 (330)
|+..+.=.+....++...++.+.......+.++..+.....+|..+.......|= .......+..-+..|...+
T Consensus 10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~------~~~~l~~~~~fi~~L~~~I 83 (150)
T 3ajw_A 10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGI------ASNRWINYQQFIQTLEKAI 83 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGG------GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHH
Confidence 3344445566677788888888888888888888888888888766544433432 1233455666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 179 DQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
+.+...+..+...+......+.+...++..+
T Consensus 84 ~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~ 114 (150)
T 3ajw_A 84 EQHRLQLTQWTQKVDLALKSWREKKQRLQAW 114 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666666655544
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.34 E-value=4.8 Score=40.51 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK-SYADNANALKAQLDQQ 181 (330)
Q Consensus 103 Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~-~~e~~~~~le~qle~~ 181 (330)
=+|+..-|.++|..+.++..+.+....-+ +...+.|..+...+. +++. ...+.. +++.++..|+..++.+
T Consensus 59 ErDltkrINELKnqLEdlsKnsKdseqy~---k~~~E~Lr~rq~q~~--dNdN----tynE~S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKNNKDSHSLT---TNIMEILRGDFSSAN--NRDN----TYNRVSEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHH---HHHHHTTSSHHHHHH--HHHH----HHHHTTHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHHHH---HHHHHHHHHHHHhhh--ccch----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444444333 333444444444433 1111 112222 3455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 182 KNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 182 ~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
-.++..|+..|+++..+|+.++.-+
T Consensus 130 lsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444333
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=85.38 E-value=16 Score=30.99 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
+...|+.++..|...+..+....+-....+.+|+..|..+..++.
T Consensus 71 rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433333
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.25 E-value=16 Score=35.33 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
.+-..+-.|+..|+.-..+ -...++++|..|.++..++..+.|....
T Consensus 422 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 422 TANHTVMALMASLDAEKAQ---GQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666544444 3347777777777777777776665443
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.69 E-value=22 Score=38.84 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 117 TAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 117 lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
+..+......++.++.+++.+++..++.
T Consensus 916 ~~~l~~~~~~LE~kl~eLq~rL~~~e~~ 943 (1080)
T 2dfs_A 916 VERYKKLHIGLENKIMQLQRKIDEQNKE 943 (1080)
T ss_dssp ----------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555667777777777666554333
No 23
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=83.69 E-value=14 Score=29.00 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 137 ASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 200 (330)
Q Consensus 137 ~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~ 200 (330)
.+.+.-.+|+.|+..++.+.||.. .++.....++..-+.........++.++..|..|+..|-
T Consensus 33 ~A~dKl~~A~~Am~~~~y~~Ar~l-AEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 33 LAQDKYAAAQIAMTAESYKKARLL-AEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555689999999999999875 445666777777777777777777777777777776653
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.58 E-value=22 Score=35.76 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020141 179 DQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 179 e~~~~~v~~Lk~~l~~Le~Ki 199 (330)
..++..|+.+...+++||.-|
T Consensus 134 rvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.92 E-value=15 Score=28.61 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 127 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 127 le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
+..++..+..+.+.|.++|..+-.. .+.+-.+....+..+..|+..+......++.+...+.....++.+.....
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~-----~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~ 81 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEAD-----KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777888888888776332 23343444445555556666665555555555555555555555554333
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.23 E-value=16 Score=28.53 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 127 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 127 le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
++.++..+..+.+.|.++|..+-.. .+.+-.+....+..+..|...+...+..++.+...+.....++.+.
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~-----~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEAD-----KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777788888877765322 2333333444455555555555555555555555555554444444
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.84 E-value=19 Score=28.99 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
..+.+.+|.+++.+|..+...-+++...-..++...+.++.+.++ ++ ..+...+
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~--------------E~-----~~r~~~E------- 68 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE--------------EM-----LQREEAE------- 68 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH-----HHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------------HH-----HHHHHHH-------
Confidence 356777888888888777776666666555555555544443221 11 1223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 176 AQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARA 213 (330)
Q Consensus 176 ~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~ 213 (330)
..+..++..++...-.-..|+.+++.++.++.-|+.-+
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555566677777777777777777553
No 28
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=81.77 E-value=45 Score=33.33 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNV 184 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~ 184 (330)
+.+..|......++++...-..++..|+....+...-. .++++-++.+-+.-...+..|+..++.++..++....
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n----~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~- 80 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAAN----AALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQK- 80 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 55667777777777777766666666655444332211 1244444444445555556666666655555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
++.+-+.++..+...+..+
T Consensus 81 ------~~AeY~~kl~aYe~~~~~~ 99 (497)
T 3iox_A 81 ------DLADYPVKLKAYEDEQTSI 99 (497)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 4444444555555444433
No 29
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=80.41 E-value=29 Score=30.35 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 101 QAVLEMNDDLVKMRQATAQVLASQKRLENKCK 132 (330)
Q Consensus 101 Q~Irdme~~L~kar~~lA~~~A~~k~le~k~~ 132 (330)
....++...+..++..+......-+.|+..++
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~ELE 48 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELE 48 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555566666666666666665555554443
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.29 E-value=17 Score=27.59 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020141 93 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQK 151 (330)
Q Consensus 93 EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~ 151 (330)
.|.+.+|...|.+++..-..+......+......+.++..++..+...|+++...-|.+
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999999999999999999999999999999999999998876543
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.00 E-value=45 Score=32.26 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 020141 112 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGE 153 (330)
Q Consensus 112 kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 153 (330)
..++.-......++.+++.+...+....+.+...+.++++-+
T Consensus 357 ~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 333333455556666777777777776666666666544433
No 32
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=79.57 E-value=46 Score=33.01 Aligned_cols=42 Identities=12% Similarity=0.308 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASED 140 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~ 140 (330)
++..|.+|++.+.++......+.-..+.++..++..+.++..
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~e 139 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD 139 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 555566666666665544443333333344444444443333
No 33
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=79.57 E-value=9.4 Score=29.84 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 103 VLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 141 (330)
Q Consensus 103 Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~ 141 (330)
|.+.++.+...+..+..+......++.++..+...+..+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555556666665555544
No 34
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.14 E-value=18 Score=27.04 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 127 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE 201 (330)
Q Consensus 127 le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e 201 (330)
+..++..+..+.+.|.+++..+-.. .+.+-.+....+..+..|+.-+...+..++.+...+.....++++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~-----l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEAD-----KKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777765332 222323333344444444444444444444444444444444443
No 35
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=78.42 E-value=17 Score=32.43 Aligned_cols=63 Identities=14% Similarity=0.312 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKS 166 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~ 166 (330)
||...+...=|.++....++.+.+..+-..++.++.++..+.++-+.- -|+ -+|++++.-++.
T Consensus 7 ~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~--~ar--------ilAkelVR~Rk~ 69 (218)
T 3frt_A 7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKD--VCI--------VLAKEMIRSRKA 69 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH--HHH--------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHH--------HHHHHHHHHHHH
Confidence 676666666666666666666666666666666666666655543321 111 377777765544
No 36
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=77.48 E-value=54 Score=31.71 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
++.++..|+..++.+-..+..|+..|+.+..+|+.++..+
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555554
No 37
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=76.74 E-value=58 Score=31.73 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
..-+...+++..|+..+......+..|+..+..++.+|+.++.+...|.
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334455566666666666666666666666666666666665555554
No 38
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=76.72 E-value=27 Score=27.94 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 204 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~ 204 (330)
++..-+..|+..|+.-...-...-+++......|+.+++.+..
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 3344444455555444444444444444444444444444333
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.37 E-value=41 Score=29.38 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=52.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 020141 86 NAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRK 165 (330)
Q Consensus 86 n~~ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~ 165 (330)
+...+.+++-..-|+.+...-++==.++...|.++-...+.+..+...+..+++.|..+.... ..
T Consensus 20 ~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~---------------~~ 84 (189)
T 2v71_A 20 MKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ---------------YA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
Confidence 333444444444444444433333334444444444455555555555566666665544322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
.+..++..|+.++.........|+..|++|+..-..+.++..
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 223445556666665555555555555555555555544433
No 40
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=69.38 E-value=22 Score=26.63 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQS 215 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~ 215 (330)
+++.+..|+..+.-++..++.|..-+.+-...|..++.+...|..|...
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666667777666666666666666666666655443
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.27 E-value=46 Score=27.45 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
.+..++..++.+...++.++..+..|+.++..+.
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 42
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=69.20 E-value=74 Score=31.52 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 137 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~ 137 (330)
++.-|.+|+..|.++......+-..-+.++..+...+..
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~ 131 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQ 131 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCC
Confidence 455566666666666665555544444444444444433
No 43
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=68.95 E-value=26 Score=24.32 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLES 197 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~ 197 (330)
++..|..+++++...|+.|..++..+..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 44
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=68.29 E-value=27 Score=24.17 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
+.....++.++..+...-.+|...+.....+|..++.+.+.|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556777777777777777777777777777777666544
No 45
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.06 E-value=47 Score=26.88 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
+.++++..+..|...|......+++|+.....+..+|...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 4556666777777777777777777777776666655443
No 46
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.58 E-value=6.3 Score=40.12 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=18.3
Q ss_pred hHHHhhhccC-CHHHHHHHHHHHcCC
Q 020141 264 EGKFALLETS-SVDDDLANLKKELSG 288 (330)
Q Consensus 264 d~k~~~le~~-~vd~eLa~LKa~l~~ 288 (330)
+.+...++++ .+.+.|..|+.++..
T Consensus 504 ~eR~~~~ekn~~lq~qL~~L~~el~~ 529 (575)
T 2i1j_A 504 ADRRTLAERNERLHNQLKALKQDLAR 529 (575)
T ss_dssp GGCCCHHHHCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4454555555 599999999999865
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.23 E-value=97 Score=29.86 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=3.6
Q ss_pred hHHHHHHH
Q 020141 73 LFDRLARV 80 (330)
Q Consensus 73 if~Rl~~l 80 (330)
+..|+..+
T Consensus 303 ~~~~l~~~ 310 (487)
T 3oja_A 303 FADRLIAL 310 (487)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33555443
No 48
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=66.17 E-value=32 Score=33.59 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 160 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 160 AL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
-++++..++..+.....+ +..|+..+.....+|.+++.+...|..
T Consensus 89 ml~~~~~~~~~~~~~~~~-------i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSS-------IRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 444444444445555555555444443
No 49
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=65.45 E-value=62 Score=27.35 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=10.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 92 FEDPEKILEQAVLEMNDDLVKMRQAT 117 (330)
Q Consensus 92 ~EDPe~mLeQ~Irdme~~L~kar~~l 117 (330)
+|+-....+..|+++++.|..+-..+
T Consensus 33 aEERae~aE~k~~eLEeeL~~v~~nl 58 (155)
T 2efr_A 33 AEERAELSEGKSAELEEELKTVTNNL 58 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444444444333333
No 50
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=63.72 E-value=55 Score=26.15 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 98 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAE 135 (330)
Q Consensus 98 mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~ 135 (330)
-|.-.|..+...+...|.-.-.-++....++..+..+.
T Consensus 38 ~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lr 75 (119)
T 3ol1_A 38 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR 75 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 34455556666666665554444444444444333333
No 51
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.43 E-value=48 Score=25.43 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 110 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 189 (330)
Q Consensus 110 L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk 189 (330)
+......+|..+-.-..||++=..++.++..|..+-.. .-...|+..+..+..+++.....-..+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~--------------~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKS--------------RLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666667777777777777777654211 0112366667777777776666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 020141 190 SNTRLLESKIQEARSK 205 (330)
Q Consensus 190 ~~l~~Le~Ki~e~k~k 205 (330)
..+..|...+.+++.|
T Consensus 77 ~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 77 VERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666666666554
No 52
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=62.20 E-value=29 Score=33.50 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=15.0
Q ss_pred ccCchHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 020141 69 TRMNLFDRLARVVKSYANAILSSFEDPEKILE 100 (330)
Q Consensus 69 ~~Msif~Rl~~lira~in~~ldk~EDPe~mLe 100 (330)
..|+||.++..+ ...+.++-..+.||.-.-|
T Consensus 11 ~~~~~~~~l~~~-~~r~~el~~~l~~p~~~~d 41 (371)
T 1zbt_A 11 HHMNIYDQLQAV-EDRYEELGELLSDPDVVSD 41 (371)
T ss_dssp CCCCHHHHHHHH-HHHHHHC------------
T ss_pred hhhhHHhhHHHH-HHHHHHHHHHhcCCcchhC
Confidence 459999999865 4677888888888865444
No 53
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=61.67 E-value=47 Score=24.64 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
.+.+..++..+........++...+..|..||..+...++.+.-+
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455555444444444433
No 54
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.99 E-value=51 Score=24.90 Aligned_cols=36 Identities=11% Similarity=0.259 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 172 NALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 172 ~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
-.+..+++.+...|..|+..+..+..+|+.++.+..
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555544433
No 55
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=60.47 E-value=25 Score=34.32 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATA 118 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA 118 (330)
++..|++|++.|.++.....
T Consensus 36 V~~~l~~LE~~l~elsn~ts 55 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTG 55 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 44455555555555444433
No 56
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.53 E-value=73 Score=26.21 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHh
Q 020141 73 LFDRLARVVKSYANAIL 89 (330)
Q Consensus 73 if~Rl~~lira~in~~l 89 (330)
-+.++...|-..+.++-
T Consensus 29 ~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 29 YLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677777666666665
No 57
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=59.28 E-value=13 Score=23.10 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHh
Q 020141 231 TSSALSAFEKMEEKVLTMESQADSL 255 (330)
Q Consensus 231 ~~sa~~~feRmEeki~~~EA~aeA~ 255 (330)
..+..+.|.|+|+++..|+-..+.+
T Consensus 5 ~nTIGaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 5 SNTIGARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556789999999999998877654
No 58
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=57.46 E-value=83 Score=26.18 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 110 LVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 189 (330)
Q Consensus 110 L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk 189 (330)
|..+....-..-...+.++.+-......+..++.+...|.. .|.++-.+.......+..++..++.....++...
T Consensus 26 Leeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~-----~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE 100 (147)
T 2b9c_A 26 LEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH-----IAEDADRKYEEVARKLVIIESDLERAEERAELSE 100 (147)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445666777777777778888877777753 4555655555666666777777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020141 190 SNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 190 ~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
..+..|+..|..+-+.+..|-
T Consensus 101 ~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 101 GKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 666666666665555444443
No 59
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.38 E-value=36 Score=32.17 Aligned_cols=45 Identities=7% Similarity=0.059 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
...+++..|+..+..+..++..|+..+..++.+|.+++.++..+.
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556666666666666666666655555554
No 60
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.11 E-value=23 Score=26.04 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki 199 (330)
+.++..|+.....+......|+..+..|..++
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333344444444444444433
No 61
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=53.24 E-value=40 Score=25.14 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 163 RRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 163 rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
|...+|.+++=.+..++++...|..-...|..|+.++..+..+...+
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444444333
No 62
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=52.68 E-value=1.9e+02 Score=28.86 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHHHHH------HhHHHHHHHhhcccCCChhHHHhhhcc--------CCHHHHHHHHHHHcCCCC
Q 020141 231 TSSALSAFEKMEEKV------LTMESQADSLNQLTTDDLEGKFALLET--------SSVDDDLANLKKELSGSS 290 (330)
Q Consensus 231 ~~sa~~~feRmEeki------~~~EA~aeA~~eL~~~~Ld~k~~~le~--------~~vd~eLa~LKa~l~~~~ 290 (330)
.++|+.+|+++..-+ ...+|-+.|+..+..+++...|..+++ -.+.+.+..++....-|.
T Consensus 468 vDDALaSfEKyk~NlnkKfnakDR~AIvNALkSvDa~dmAkNL~kfSKaFg~tgKvIka~DV~eK~kkG~ETGN 541 (602)
T 1cii_A 468 VEEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDISSNLNRFSRGLGYAGKFTSLADWITEFGKAVRTEN 541 (602)
T ss_dssp HHHHHHHHHHTHHHHTTSSCSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSCBCCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcChhhhcchhhHHHHHHHHHHcCHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcCCC
Confidence 478999999998876 356677778887877788888877652 268899999988775443
No 63
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=52.17 E-value=81 Score=24.49 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 158 REALKRRKSYADN------ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 204 (330)
Q Consensus 158 reAL~rk~~~e~~------~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~ 204 (330)
|++|.+....=.+ ...++.++......++.|+.++.+++.-|.++..
T Consensus 38 regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 38 REALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5565555543111 2233667777777777777777777777776643
No 64
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=50.70 E-value=63 Score=27.91 Aligned_cols=49 Identities=10% Similarity=0.136 Sum_probs=38.0
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 90 SSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQAS 138 (330)
Q Consensus 90 dk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~ 138 (330)
..+++|..++++.|..++..+.+.+..+-.+...-...+.++..+....
T Consensus 117 k~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 117 EKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999888888887777666666666665555543
No 65
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=50.02 E-value=68 Score=25.47 Aligned_cols=49 Identities=8% Similarity=0.194 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKT 218 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~~~AkA 218 (330)
.+..+++++.+.+..+..|..++..|+..++.++.+|+-+-...+....
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888888888888887666655433
No 66
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=49.92 E-value=23 Score=32.83 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020141 101 QAVLEMNDDLVKMRQATA 118 (330)
Q Consensus 101 Q~Irdme~~L~kar~~lA 118 (330)
..+...+.++..++..+.
T Consensus 70 ~~l~~~~a~l~~~~a~l~ 87 (369)
T 4dk0_A 70 NTLNTRKAALASYQAQLV 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 67
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=49.69 E-value=1.2e+02 Score=25.87 Aligned_cols=48 Identities=8% Similarity=0.203 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
..+.+++..+..|...++.......++...-+.|..+|..++-....+
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666666666666666666666666666665555443
No 68
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.19 E-value=61 Score=23.97 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 178 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 178 le~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
+.+....+..++..|.+.+..|.+++.+++-+
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444455555555444433
No 69
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=48.62 E-value=1.1e+02 Score=30.55 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 020141 124 QKRLENKCKAAEQASEDWYRKAQLALQKGE 153 (330)
Q Consensus 124 ~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 153 (330)
++.+..++++++.+......+...+.+.|+
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~ 71 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKE 71 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 334444444444444444444444444554
No 70
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=47.99 E-value=1.2e+02 Score=30.06 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLAL 149 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL 149 (330)
+..+.|+-.+++..+.-+++-|...+.+-+.|+.-+..+..+|.++|.-+...+
T Consensus 106 dn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 106 DENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444433
No 71
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.56 E-value=42 Score=23.22 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 186 NNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 186 ~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
+.|+....+|+.|+.+++.+.+.++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444333333333
No 72
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=47.35 E-value=1.3e+02 Score=25.37 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Q 020141 181 QKNVVNNLVSNTRLLESKIQEARSKKDTLKARA--QSAKTATKVSEML 226 (330)
Q Consensus 181 ~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr~--~~AkAq~~~~~~~ 226 (330)
+......|.-++..++.++..++.+=..|..|. +.++....+|...
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~an 148 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444455555556666666666666666663 2333344444433
No 73
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=46.43 E-value=2.3e+02 Score=28.06 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
++..|+..++.+-..+.-|+..|+.+..+|+.+
T Consensus 119 ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRL 151 (491)
T 1m1j_A 119 RIVTLKQRVATQVNRIKALQNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334333333344444444444444444433
No 74
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=46.15 E-value=47 Score=30.33 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020141 100 EQAVLEMNDDLVKMRQATAQV 120 (330)
Q Consensus 100 eQ~Irdme~~L~kar~~lA~~ 120 (330)
+..+..++.++..++..+..+
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~a 88 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQA 88 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444444433
No 75
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=45.66 E-value=95 Score=23.39 Aligned_cols=39 Identities=3% Similarity=0.035 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
..++..++.++..+...++.+.-.+..+..+-.++...+
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 76
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=45.45 E-value=1.1e+02 Score=24.20 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
+.++..++..++.....+..++.++..+...|+++.
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555543
No 77
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=45.34 E-value=70 Score=30.16 Aligned_cols=37 Identities=5% Similarity=-0.029 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
.+..++.+++..+......+..|+..|...+.++..|
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333333
No 78
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=45.27 E-value=1e+02 Score=23.68 Aligned_cols=25 Identities=8% Similarity=0.229 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 112 KMRQATAQVLASQKRLENKCKAAEQ 136 (330)
Q Consensus 112 kar~~lA~~~A~~k~le~k~~~~~~ 136 (330)
.++..-+.++..-..+++....+..
T Consensus 15 ~l~~eE~~L~~eL~~lEke~~~l~~ 39 (96)
T 3q8t_A 15 ELALEEERLIQELEDVEKNRKVVAE 39 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333333333333333333
No 79
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.45 E-value=31 Score=23.86 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki 199 (330)
.++.|+.+.+.++..+..|...+.+++.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444
No 80
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=43.89 E-value=1.4e+02 Score=29.15 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 020141 121 LASQKRLENKCKAAEQASEDWYRKAQLALQKGE 153 (330)
Q Consensus 121 ~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~ 153 (330)
-..++.+..++++++.+......+...+...|.
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~ 69 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE 69 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334455555566666666666655555555554
No 81
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=42.69 E-value=30 Score=31.58 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 169 DNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 169 ~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
..+..++.+++.+..+...|...++.++.+|..++.+.+.|+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777777777777777777777777777777776654
No 82
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=42.51 E-value=1.3e+02 Score=24.01 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 124 QKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 124 ~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
.+.|..+...+..+++.|..+...+ +..+-..+..|+.++.++...-+.|...+++|+.+=.++.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~---------------~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQ---------------YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3456777788888888888776653 2333456677777777777777777777777776666665
Q ss_pred HHHH
Q 020141 204 SKKD 207 (330)
Q Consensus 204 ~k~~ 207 (330)
+...
T Consensus 70 R~~R 73 (111)
T 2v66_B 70 RAKR 73 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 83
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.13 E-value=52 Score=24.08 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 101 QAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQA 137 (330)
Q Consensus 101 Q~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~ 137 (330)
++|.+++..+..++.....+......|..++..+..+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455444444444444444444444444444433
No 84
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=41.98 E-value=1.3e+02 Score=23.73 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAAE 135 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~~ 135 (330)
|+..+|...++.-..+....+.|+.++.++.
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666655
No 85
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=40.85 E-value=1.2e+02 Score=23.10 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 178 LDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 178 le~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
++.....++.+...|...+.+|.+++
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444443
No 86
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.43 E-value=73 Score=20.58 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 183 NVVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 183 ~~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
-.++..+.++.+|+.++..++.++.+|-
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888877663
No 87
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=39.61 E-value=79 Score=20.76 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 184 VVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 184 ~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
.+..|+..++.|+.|+..++.+++.|+
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667777777777777766553
No 88
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=39.44 E-value=38 Score=30.91 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKA 133 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~ 133 (330)
+++.++.+++..+..+.+....++.+++.
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~ 94 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKL 94 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555444444444333
No 89
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=39.36 E-value=1.1e+02 Score=22.13 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
+++.+..+.......+...+..+.+|...|+.+..+++.+
T Consensus 36 k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 36 KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444444444444433
No 90
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=38.78 E-value=1.4e+02 Score=27.22 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH------HHHHhcCcHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQ------KRLENKCKAAEQASEDWYRKA------QLALQKGEEDLAREALKR 163 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~------k~le~k~~~~~~~~~~~e~rA------~~AL~~G~EdLAreAL~r 163 (330)
+.+|...+..++.++...+..+..+...- ..++. +-...+.....+.+| ..=+=..+||+|.-.|.+
T Consensus 129 Ea~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~-Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~ 207 (261)
T 3rkg_A 129 ESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRH-LLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTV 207 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccC
Confidence 45666666666666666555544443211 12221 112222334444442 222556889999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 164 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 164 k~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
+.......++++-.++..-.+++.+-..+..|...|...+
T Consensus 208 k~~~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TE 247 (261)
T 3rkg_A 208 KKSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTE 247 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544444445555555555555555555555544444443
No 91
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=38.48 E-value=92 Score=27.04 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=42.2
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 89 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 139 (330)
Q Consensus 89 ldk~EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~ 139 (330)
++++-||..++..+|.=+=+.+..++..+.+...+-.+|.++.++..++.+
T Consensus 133 L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 133 LEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556779999999899999899999888888888888888888887776654
No 92
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.20 E-value=22 Score=33.61 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
.+...+|..+..++.++ ..|+..+..++.+|.+++.+...|
T Consensus 4 ~~~~~lE~~Il~~~~~i-------~~L~~~l~~~~~ki~~L~~~i~~l 44 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSI-------RYLQEIYNSNNQKIVNLKEKVAQL 44 (319)
T ss_dssp ------CTTTTTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 444444444445555444444443
No 93
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.97 E-value=1.1e+02 Score=21.64 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 184 VVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 184 ~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
.+..|+..-..|+.+|..++.+...|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444433
No 94
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=35.35 E-value=2.6e+02 Score=25.56 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=5.5
Q ss_pred ccccccc-cceee
Q 020141 37 LTTSFFN-GGVTR 48 (330)
Q Consensus 37 l~~~~~~-~~~~~ 48 (330)
+..+|++ +|+.+
T Consensus 21 f~~~FW~~~g~~~ 33 (350)
T 3aco_A 21 SSDSFWEVGNYKR 33 (350)
T ss_dssp --CCTTSTTTTHH
T ss_pred ccccCCCCCCcHH
Confidence 6677775 34443
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=35.01 E-value=99 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
.|+.+......+++.|+..+..+...+..++.+.
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444433
No 96
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=34.70 E-value=98 Score=25.05 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 127 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQ 177 (330)
Q Consensus 127 le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~q 177 (330)
+..++..+....+....+--.|...||.++-.+...++..+..+++.++..
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777778888888777666655555555555444443
No 97
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.66 E-value=2.5e+02 Score=27.82 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020141 187 NLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 187 ~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
.++..+..++.++.+++.++
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 98
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=33.20 E-value=2.4e+02 Score=24.44 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 020141 127 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALK 175 (330)
Q Consensus 127 le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le 175 (330)
+..-..++...+..+......|+..|+-+-|...+.+.+-+..-...++
T Consensus 153 l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~ 201 (207)
T 3bvo_A 153 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK 201 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666677777788889998888888777776655444443
No 99
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.52 E-value=1.1e+02 Score=23.57 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 164 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQ 200 (330)
Q Consensus 164 k~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~ 200 (330)
+..++.....|..+++.+......+...+..++.+++
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555554
No 100
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.39 E-value=1.9e+02 Score=23.14 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020141 125 KRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 125 k~le~k~~~~~~~~~~~e~r 144 (330)
.+++.++.+++.+.+.....
T Consensus 43 ~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444433
No 101
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=32.36 E-value=1.6e+02 Score=22.10 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 112 KMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSN 191 (330)
Q Consensus 112 kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~ 191 (330)
..|..+-.+.....++.-++..++..+++|..+-..- +..+...+..+.. ++..++.+.-.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E------------~~~R~~~E~d~~~-------LrkdvD~a~l~ 64 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE------------MLQREEAENTLQS-------FRQDVDNASLA 64 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH-------HHTTHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH-------HHhhHHHHHHH
Confidence 3344444444555556666666666666655544321 1122333444444 44444455555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020141 192 TRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 192 l~~Le~Ki~e~k~k~~~Lk 210 (330)
-..|+.+++.++.++.-|+
T Consensus 65 r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 65 RLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5566666666666665554
No 102
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=32.34 E-value=45 Score=19.32 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 020141 135 EQASEDWYRKAQLALQKG 152 (330)
Q Consensus 135 ~~~~~~~e~rA~~AL~~G 152 (330)
...+..|+.+.--||+.|
T Consensus 9 rrriarwekriayalkng 26 (26)
T 1hji_B 9 RRRIARWEKRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 467889999999998876
No 103
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=31.49 E-value=71 Score=32.28 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHh
Q 020141 73 LFDRLARVVKSYANAIL 89 (330)
Q Consensus 73 if~Rl~~lira~in~~l 89 (330)
+=+.||.++.++..=..
T Consensus 276 ~ak~i~~lc~~~H~ff~ 292 (575)
T 2i1j_A 276 VNKRILALCMGNHELYM 292 (575)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45788999888865443
No 104
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.03 E-value=1.3e+02 Score=22.16 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTR 193 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~ 193 (330)
.+..++.++++....+..|+..+.
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 105
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.97 E-value=2e+02 Score=22.76 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Q 020141 164 RKSYADNANALKAQLDQQKNVVNNLVSNTR-------------------LLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 164 k~~~e~~~~~le~qle~~~~~v~~Lk~~l~-------------------~Le~Ki~e~k~k~~~LkAr 212 (330)
.+++++.+...+.||..+.+.+...+.... .++.||.++++.+....+.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va~ 104 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVAA 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 106
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.57 E-value=1.2e+02 Score=20.10 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 184 VVNNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 184 ~v~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
.+++....|.+-+.+|.+++.++..|.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555444
No 107
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.37 E-value=1.2e+02 Score=22.80 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 178 LDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 178 le~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
+...+..-..|+..++.|+..+++.+.+++.+++
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~ 48 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARA 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555555555555555555544443
No 108
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.64 E-value=4.2e+02 Score=26.12 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 97 KILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 97 ~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
..|+..+.++.+....+...+..+....+..+.++......+.++...
T Consensus 103 qeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~ 150 (464)
T 1m1j_B 103 RDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTE 150 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 335555556666666666666666666666666666666655555543
No 109
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.46 E-value=65 Score=29.64 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAA 134 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~ 134 (330)
+.+.++.+++..+..+.+.....+.+++.+
T Consensus 67 ~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a 96 (369)
T 4dk0_A 67 TQINTLNTRKAALASYQAQLVARKTAYDVA 96 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666665555444444444433
No 110
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=29.24 E-value=2.6e+02 Score=23.65 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 020141 93 EDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNAN 172 (330)
Q Consensus 93 EDPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~ 172 (330)
.||.-+++++ +..+.|..+... ..+..-..+....+..+......++..++-+-|+..+.+..-+.....
T Consensus 99 ~d~~fLme~m--e~rE~leea~~~--------~~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~ 168 (181)
T 3uo3_A 99 SDPQLLLKVL--DIHDELSQMDDE--------AGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAK 168 (181)
T ss_dssp TCHHHHHHHH--HHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHHHhccCH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3565554432 445555554321 123344446677888888888899999998888888877766665544
Q ss_pred HH
Q 020141 173 AL 174 (330)
Q Consensus 173 ~l 174 (330)
.+
T Consensus 169 ~i 170 (181)
T 3uo3_A 169 AF 170 (181)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 111
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.00 E-value=1.2e+02 Score=19.44 Aligned_cols=9 Identities=22% Similarity=0.350 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 020141 168 ADNANALKA 176 (330)
Q Consensus 168 e~~~~~le~ 176 (330)
++.++.|-.
T Consensus 7 E~KVEeLl~ 15 (36)
T 1kd8_B 7 KAKVEELKS 15 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 112
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.13 E-value=1.6e+02 Score=20.73 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARS 204 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~ 204 (330)
....++..++.++..-..|+..+..|+..+..++.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555566666666555555543
No 113
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=28.04 E-value=2.7e+02 Score=23.35 Aligned_cols=43 Identities=9% Similarity=0.322 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 94 DPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 136 (330)
Q Consensus 94 DPe~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~ 136 (330)
||...|+..++.++....++.+.+..+-..++.++.++..+.+
T Consensus 7 ~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655666666666666666666666555566666555554443
No 114
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.04 E-value=1.9e+02 Score=21.67 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQASE 139 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~ 139 (330)
++-..+...+..+..+......++.++.++..-..
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555544333
No 115
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=27.98 E-value=2e+02 Score=22.00 Aligned_cols=44 Identities=9% Similarity=0.323 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNLVSNTR--------LLESKIQEARSKKDTLKARAQSA 216 (330)
Q Consensus 173 ~le~qle~~~~~v~~Lk~~l~--------~Le~Ki~e~k~k~~~LkAr~~~A 216 (330)
..+..++++...+.+|.-.++ .+..||..+++.++.|+...+.+
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555444433 55778888888888877665554
No 116
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=27.94 E-value=2e+02 Score=21.89 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLASQKRLENKCKAAEQ 136 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~~k~le~k~~~~~~ 136 (330)
+.-..+...+..+..+......++.++.++..
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555554443
No 117
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.89 E-value=2.7e+02 Score=23.36 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020141 105 EMNDDLVKMRQATAQVLAS 123 (330)
Q Consensus 105 dme~~L~kar~~lA~~~A~ 123 (330)
++++.|..+|+.+......
T Consensus 17 ~LeD~L~~~R~el~~~~~r 35 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAA 35 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4556666666665544433
No 118
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.73 E-value=1.3e+02 Score=19.81 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
+..|+.....|+.+..+++.+..+|..
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555444443
No 119
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=27.44 E-value=3.3e+02 Score=24.16 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 128 ENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKD 207 (330)
Q Consensus 128 e~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~ 207 (330)
+.++.+++..+.+++. |+...+..+..++-.+...+..+..|+.++..++.++.....+..
T Consensus 83 e~rI~a~~a~l~dHE~-------------------RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Is 143 (242)
T 3c9i_A 83 EARIKQLRIDVDDHES-------------------RITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNIS 143 (242)
T ss_dssp HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHH-------------------Hhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchh
Q ss_pred HHHH
Q 020141 208 TLKA 211 (330)
Q Consensus 208 ~LkA 211 (330)
.|.+
T Consensus 144 al~~ 147 (242)
T 3c9i_A 144 ALQA 147 (242)
T ss_dssp HHHH
T ss_pred hhhh
No 120
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=27.13 E-value=34 Score=23.71 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHhh
Q 020141 313 DAEIEKELNELRQRA 327 (330)
Q Consensus 313 ~~~~~~~~~~~~~~~ 327 (330)
|.+.|.||++||++-
T Consensus 23 d~~Me~Ei~elr~RY 37 (51)
T 2jo8_A 23 DPMMEQEIEEIRQKY 37 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 678899999999863
No 121
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.11 E-value=4.3e+02 Score=26.09 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 185 VNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 185 v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
+..++..+..++.++.++..++..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555545444444433
No 122
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=26.57 E-value=40 Score=31.80 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 183 NVVNNLVSNTRLLESKIQEARSKKDTL 209 (330)
Q Consensus 183 ~~v~~Lk~~l~~Le~Ki~e~k~k~~~L 209 (330)
..|..+..++..|+..|..++.++..|
T Consensus 11 ~~Il~~~~~i~~L~~~l~~~~~ki~~L 37 (319)
T 1fzc_C 11 ASILTHDSSIRYLQEIYNSNNQKIVNL 37 (319)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 123
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.55 E-value=1.2e+02 Score=19.42 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLV 189 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk 189 (330)
+++.++.|-..-..++..|.+|+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444333333333343333
No 124
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.51 E-value=3e+02 Score=23.41 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020141 192 TRLLESKIQEARSKKDT 208 (330)
Q Consensus 192 l~~Le~Ki~e~k~k~~~ 208 (330)
++++-.+|.+++.++..
T Consensus 115 I~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 115 INAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 125
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=26.48 E-value=5.1e+02 Score=26.11 Aligned_cols=6 Identities=0% Similarity=0.069 Sum_probs=2.3
Q ss_pred HHHHHH
Q 020141 74 FDRLAR 79 (330)
Q Consensus 74 f~Rl~~ 79 (330)
+.+++.
T Consensus 411 l~~l~~ 416 (592)
T 1f5n_A 411 LQVIFS 416 (592)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 126
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=26.39 E-value=2.5e+02 Score=22.40 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 106 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRK 144 (330)
Q Consensus 106 me~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~r 144 (330)
.+....++......+......+..++..-.....+.+++
T Consensus 32 ~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~ 70 (129)
T 2fxo_A 32 SEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEER 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333444444455555555555555444444444443
No 127
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=26.06 E-value=2.4e+02 Score=22.08 Aligned_cols=28 Identities=4% Similarity=0.132 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHHHhHHHHHHHhh
Q 020141 229 VNTSSALSAFEKMEEKVLTMESQADSLN 256 (330)
Q Consensus 229 ~~~~sa~~~feRmEeki~~~EA~aeA~~ 256 (330)
++.+.....++.+++.+...+--.++++
T Consensus 3 m~idkVe~lmDei~E~~e~~~EI~e~Ls 30 (104)
T 3um3_B 3 MDIDKVDELMQDIADQQELAEEISTAIS 30 (104)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666665555555544
No 128
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.03 E-value=2.8e+02 Score=23.00 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
-...|+.+++.-...+..|+..+.-.+..+.+.+...+.++.
T Consensus 87 Yn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~ 128 (152)
T 4fla_A 87 YNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444334444444444444333
No 129
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.03 E-value=2.3e+02 Score=21.98 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 199 IQEARSKKDTLKARAQSAKTATK 221 (330)
Q Consensus 199 i~e~k~k~~~LkAr~~~AkAq~~ 221 (330)
+++++.++..|....+-+..++.
T Consensus 69 v~elqgEI~~Lnq~Lqda~~~~~ 91 (99)
T 3ni0_A 69 IKELENEVTKLNQELENLRIQKE 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 130
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.03 E-value=1.8e+02 Score=20.78 Aligned_cols=17 Identities=6% Similarity=0.083 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020141 184 VVNNLVSNTRLLESKIQ 200 (330)
Q Consensus 184 ~v~~Lk~~l~~Le~Ki~ 200 (330)
.+..|+..++.|+..|+
T Consensus 57 Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444443333
No 131
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=25.98 E-value=1.8e+02 Score=20.76 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 100 EQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYR 143 (330)
Q Consensus 100 eQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~ 143 (330)
|+.|.+=.+.|.+.-..+.++...+.++++.+.-...+-.+++.
T Consensus 4 D~~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~ 47 (64)
T 3t97_C 4 DRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELED 47 (64)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888877776666553
No 132
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=25.69 E-value=46 Score=22.19 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Q 020141 72 NLFDRLARVVKSYANAILSSFEDPEKILEQAV 103 (330)
Q Consensus 72 sif~Rl~~lira~in~~ldk~EDPe~mLeQ~I 103 (330)
++|.|+++++++.++.+ ..+--|.-++---|
T Consensus 2 ~mWErVk~ilks~l~~a-S~iPGPVG~~asGi 32 (44)
T 1nov_D 2 TFWERVRSILKSGLNFA-STIPGPVGVAATGI 32 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHHHhH
Confidence 58999999999987754 45556765544333
No 133
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.66 E-value=2.1e+02 Score=21.40 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
...++...+.....+..|...+..++.++.+++.+
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 134
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=25.60 E-value=1.2e+02 Score=18.47 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 110 LVKMRQATAQVLASQKRLENKCKAAEQA 137 (330)
Q Consensus 110 L~kar~~lA~~~A~~k~le~k~~~~~~~ 137 (330)
+.+....++++.+..-+++++..+++.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4567778888888888888888877653
No 135
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=25.54 E-value=3.6e+02 Score=24.03 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 104 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 148 (330)
Q Consensus 104 rdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~A 148 (330)
.+++..+.++..........-...+.+|...-.+++....+...+
T Consensus 139 k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~ 183 (312)
T 3abh_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS 183 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666666666667776666666665554443
No 136
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=25.40 E-value=4.7e+02 Score=25.29 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 106 MNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLA 148 (330)
Q Consensus 106 me~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA~~A 148 (330)
+++.+.++.+.+......-...+.+|...-++.+....+...|
T Consensus 134 ~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a 176 (486)
T 3haj_A 134 AEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANS 176 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555666666666655555555554444
No 137
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=25.13 E-value=1.7e+02 Score=25.62 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 127 LENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 127 le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
++.++.+++.++...+... ++|+.-+.|...+-+.-..-+.++++.+......+.++..++.+++.++..+
T Consensus 58 ~~~~l~~a~a~l~~a~a~l---------~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l 128 (277)
T 2f1m_A 58 YQATYDSAKGDLAKAQAAA---------NIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINL 128 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 020141 207 D 207 (330)
Q Consensus 207 ~ 207 (330)
+
T Consensus 129 ~ 129 (277)
T 2f1m_A 129 A 129 (277)
T ss_dssp H
T ss_pred h
No 138
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.89 E-value=1.7e+02 Score=19.91 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 96 EKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKA 145 (330)
Q Consensus 96 e~mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e~rA 145 (330)
..-++..+.++...+..-+..+-.....-.++...+..+...|.+|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777788778888888888888888888888888888888887654
No 139
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.89 E-value=1.7e+02 Score=26.35 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 164 RKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSK 205 (330)
Q Consensus 164 k~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k 205 (330)
..+.++++..++..+++..+.....+..+..++.+++++.+.
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666666666666666666666666666665443
No 140
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.64 E-value=2.1e+02 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 186 NNLVSNTRLLESKIQEARSKKDTLK 210 (330)
Q Consensus 186 ~~Lk~~l~~Le~Ki~e~k~k~~~Lk 210 (330)
..|......+...++.++.+...|+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 141
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=24.64 E-value=2.2e+02 Score=23.16 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 020141 126 RLENKCKAAEQASEDWYRKAQLALQKGEEDLAREAL 161 (330)
Q Consensus 126 ~le~k~~~~~~~~~~~e~rA~~AL~~G~EdLAreAL 161 (330)
-++.++.+++.++..++..+...-..+.++.-.+.+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~ 45 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGF 45 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 457777888888888877666555555555555543
No 142
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=24.43 E-value=4.9e+02 Score=25.15 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 020141 73 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQA 116 (330)
Q Consensus 73 if~Rl~~lira~in~~ldk~EDPe~mLeQ~Irdme~~L~kar~~ 116 (330)
-+..+++++...+..++..-.+|+..|++...+++..+.+....
T Consensus 335 ~~~~i~~~l~~~l~~vl~G~~tpeeAl~~~~~~~~~~l~~~~~~ 378 (494)
T 1y4c_A 335 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSNNNNNNNN 378 (494)
T ss_dssp THHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHCC--------
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhccCCc
Confidence 35677778888888888887899988888888877777655544
No 143
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=24.22 E-value=50 Score=21.98 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 020141 72 NLFDRLARVVKSYANAILSSFEDPEKILEQAVL 104 (330)
Q Consensus 72 sif~Rl~~lira~in~~ldk~EDPe~mLeQ~Ir 104 (330)
++|.|+++++++.++.+ ..+--|.-++---|.
T Consensus 2 ~~WErVk~ilks~l~a~-S~iPGPVG~~asGi~ 33 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAAA-SNIPGPIGVAASGIS 33 (44)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCchhHHHHhHH
Confidence 57999999999988764 445567655544333
No 144
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=24.17 E-value=3.7e+02 Score=23.67 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 020141 235 LSAFEKMEEKVLTMESQA 252 (330)
Q Consensus 235 ~~~feRmEeki~~~EA~a 252 (330)
....+.|+.-+.......
T Consensus 249 ~~~~~~~~~~i~~id~~~ 266 (290)
T 3i2w_A 249 PQIYEEFSHTINNADQQK 266 (290)
T ss_dssp HHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHhcChHH
Confidence 345666666665544433
No 145
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.00 E-value=2.6e+02 Score=21.93 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 104 LEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWY 142 (330)
Q Consensus 104 rdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~e 142 (330)
+.+...+.+.+..+..+......++..+.++..-++..+
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555544444443
No 146
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.63 E-value=2.2e+02 Score=20.98 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020141 99 LEQAVLEMNDDLVKMRQATAQVL 121 (330)
Q Consensus 99 LeQ~Irdme~~L~kar~~lA~~~ 121 (330)
+...|-.++.++.++|..+++..
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 147
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=22.87 E-value=2.9e+02 Score=22.01 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020141 190 SNTRLLESKIQEARSKKDTLKA 211 (330)
Q Consensus 190 ~~l~~Le~Ki~e~k~k~~~LkA 211 (330)
.-+..++.||.++++.+....+
T Consensus 69 ~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 69 GVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666555554
No 148
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.38 E-value=1.9e+02 Score=19.66 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR 203 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k 203 (330)
+.++..|+..++++...|..|+..-.+++..|..++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 566777777777777777777766666665555443
No 149
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=22.33 E-value=4.8e+02 Score=24.28 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHH
Q 020141 177 QLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR----AQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQA 252 (330)
Q Consensus 177 qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr----~~~AkAq~~~~~~~~~~~~~sa~~~feRmEeki~~~EA~a 252 (330)
+++.+...+..+.+.-..++.+.++++.+...|.++ .....+-.++.+..+.- ..+..+-.+-|......---..
T Consensus 4 ~~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~-~~ds~~v~~~mq~~Le~Ere~~ 82 (302)
T 3ibp_A 4 MIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEE-FTSSQDVTEYLQQLLEREREAI 82 (302)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CSSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCc-CCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhccc--CCChhHHHhhhc--cCCHHHHHHHHHHHcCC
Q 020141 253 DSLNQLT--TDDLEGKFALLE--TSSVDDDLANLKKELSG 288 (330)
Q Consensus 253 eA~~eL~--~~~Ld~k~~~le--~~~vd~eLa~LKa~l~~ 288 (330)
...+++. ...|+.++..|. +..-+..|..|...+|+
T Consensus 83 ~~Rd~~a~~k~~Le~~ierLs~pgg~~dprL~~LAe~~GG 122 (302)
T 3ibp_A 83 VERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFGG 122 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhCC
No 150
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.24 E-value=2.8e+02 Score=26.51 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKK 206 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~ 206 (330)
+.++..++.+....+..+.+++..+.+++.++.+....+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r 47 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVR 47 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333
No 151
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.86 E-value=3e+02 Score=21.85 Aligned_cols=38 Identities=8% Similarity=0.078 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 160 ALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLES 197 (330)
Q Consensus 160 AL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~ 197 (330)
.-..+.++..++..|..++...+..+..|+..+..++.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555444443
No 152
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=21.85 E-value=2.4e+02 Score=20.70 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
.+..++..+......+..++.++..++.+|+-+
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHH
Confidence 344455555555555566666665555555544
No 153
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.68 E-value=1.3e+02 Score=24.81 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 020141 173 ALKAQLDQQKNVVNNL 188 (330)
Q Consensus 173 ~le~qle~~~~~v~~L 188 (330)
.|+.++..-...++.+
T Consensus 107 ~L~~ql~e~e~ll~~l 122 (135)
T 2e7s_A 107 RLTEQLREKDMLLDTL 122 (135)
T ss_dssp HHHHTTTHHHHCC---
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 154
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=21.60 E-value=2.8e+02 Score=21.39 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 020141 170 NANALKAQLDQQKNVVNNLVSNTRLLESKIQEAR---SKKDTLKARAQS 215 (330)
Q Consensus 170 ~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k---~k~~~LkAr~~~ 215 (330)
++..|..++..++..+......+.+|+..+...+ .....|+++...
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~I 51 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI 51 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 155
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.54 E-value=2.5e+02 Score=20.83 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020141 162 KRRKSYADNANALKAQLD 179 (330)
Q Consensus 162 ~rk~~~e~~~~~le~qle 179 (330)
.-|..++..++.|..-++
T Consensus 63 nvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 63 DIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHc
Confidence 333444444444444443
No 156
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.52 E-value=1.9e+02 Score=21.49 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 171 ANALKAQLDQQKNVVNNLVSNTRLLESKIQEA 202 (330)
Q Consensus 171 ~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~ 202 (330)
+..|..+.+.+...+..+.....+++.++.++
T Consensus 39 vdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 39 VDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444443
No 157
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=21.26 E-value=5.2e+02 Score=24.33 Aligned_cols=46 Identities=13% Similarity=0.035 Sum_probs=29.3
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 150 QKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLL 195 (330)
Q Consensus 150 ~~G~EdLAreAL~rk~~~e~~~~~le~qle~~~~~v~~Lk~~l~~L 195 (330)
+++.+++..++-.-.+..++.+..|+.++......|.+=+.-|.-|
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T 2xz3_A 374 HQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL 419 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence 3334444445555555667777788888888888887776655444
No 158
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.97 E-value=2.8e+02 Score=21.12 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 98 ILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDW 141 (330)
Q Consensus 98 mLeQ~Irdme~~L~kar~~lA~~~A~~k~le~k~~~~~~~~~~~ 141 (330)
.++..+++++..-..+.+.+..+......+...+..++.+...+
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 159
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=20.77 E-value=86 Score=19.70 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHhh
Q 020141 232 SSALSAFEKMEEKVLTMESQADSLN 256 (330)
Q Consensus 232 ~sa~~~feRmEeki~~~EA~aeA~~ 256 (330)
.+..+++-|+|.++..++...+.+-
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~KLd~l~ 30 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHKLDLLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999998887654
No 160
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.46 E-value=1.8e+02 Score=21.24 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020141 182 KNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 182 ~~~v~~Lk~~l~~Le~Ki 199 (330)
...++.|+.....|+.+|
T Consensus 60 ~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 60 QQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 161
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.34 E-value=2.9e+02 Score=20.96 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 167 YADNANALKAQLDQQKNVVNNLVSNTRLLESKI 199 (330)
Q Consensus 167 ~e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki 199 (330)
+..++..+..++..+...+..++..+..++.++
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333
No 162
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=20.25 E-value=4.1e+02 Score=22.77 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhc
Q 020141 80 VVKSYANAILSS 91 (330)
Q Consensus 80 lira~in~~ldk 91 (330)
++-|++-.+++.
T Consensus 56 LLLGnL~~IlG~ 67 (201)
T 3u0c_A 56 LLIGNLIQILGE 67 (201)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHhcc
Confidence 333444444443
No 163
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.25 E-value=2.8e+02 Score=20.74 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020141 168 ADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR 212 (330)
Q Consensus 168 e~~~~~le~qle~~~~~v~~Lk~~l~~Le~Ki~e~k~k~~~LkAr 212 (330)
+..+..++..+........+.......|+.++..+-..+..|...
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555543
No 164
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.18 E-value=2.4e+02 Score=22.87 Aligned_cols=41 Identities=5% Similarity=0.103 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 020141 102 AVLEMNDDLVKMRQATAQVLASQKRL---ENKCKAAEQASEDWY 142 (330)
Q Consensus 102 ~Irdme~~L~kar~~lA~~~A~~k~l---e~k~~~~~~~~~~~e 142 (330)
.+......+.+.+..+..+......+ +.++.++..-++.++
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~ 53 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLK 53 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555556 666666666655543
No 165
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.11 E-value=2.1e+02 Score=19.42 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020141 166 SYADNANALKAQLDQQKN 183 (330)
Q Consensus 166 ~~e~~~~~le~qle~~~~ 183 (330)
-++..+..|+..++.++.
T Consensus 9 fAERsV~KLek~ID~LEd 26 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLED 26 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
Done!