BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020143
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 169/301 (56%), Gaps = 8/301 (2%)
Query: 33 LQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTGV 92
L F++Y Q+CP+AE I+++ V + K A +R FHDC V+ CDAS+LL+
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 93 ASEQASERSFGMR--NFKYVSTIKAALEAEC-PLKVSCADIVALSAREGIVMLGGPRIPI 149
EQ + + +R FK V+ I+ LE EC VSC+DI+AL+AR+ +V+ GGP +
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 150 KTGRRDSR-VSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVN 208
GRRDSR + +V +P + ++ + L++ +G+D +V + G H++G HC +
Sbjct: 129 PLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSS 188
Query: 209 LVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHK 268
RL+P DPT+ P + LK CP D V+ R TP + DN YY +++N +
Sbjct: 189 FEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVR----TPNVFDNKYYIDLVNRE 244
Query: 269 GLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRKDCRYV 328
GL + DQ L ++ T P V++ A + F EQF +I + + T DQGEVR++C
Sbjct: 245 GLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSVR 304
Query: 329 N 329
N
Sbjct: 305 N 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 159/298 (53%), Gaps = 6/298 (2%)
Query: 33 LQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTGV 92
L N+YA CP A IK V K S +R FHDC V+ CDAS+LL+ +
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 93 ASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKT 151
E+ A + +R F+ + TIK+ +E+ CP VSCADI+A++AR+ +V LGG +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 152 GRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVH 211
GRRDS + L+ +P +++ +S F++ G + +V L GAH++G+ C
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 212 RLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLL 271
R+Y + +DP YA+ L+ CP+ D + + D TP DN YY N+ N KGLL
Sbjct: 182 RIYN--ESNIDPTYAKSLQANCPSVGGDTNLSPF---DVTTPNKFDNAYYINLRNKKGLL 236
Query: 272 IVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRKDCRYVN 329
DQQL + T V + N + F+ F A+ + +PLTG G++R +CR N
Sbjct: 237 HSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 158/306 (51%), Gaps = 11/306 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y+ +CP A I++ + Q S +R FHDC V CDAS+LL+
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+ SE+ A R F V IK ALE CP VSC+D++AL++ + + GGP +
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLV 210
GRRDS + LA IP+ +S++ F+++G++ +VAL GAH+ GR C
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFN 181
Query: 211 HRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNII 265
+RL+ DPTL+ L+ CP + A D TP DNNY+ N+
Sbjct: 182 NRLFNFSGTGNPDPTLNSTLLSTLQQLCP---QNGSASTITNLDLSTPDAFDNNYFANLQ 238
Query: 266 NHKGLLIVDQQLAS--DPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRK 323
++ GLL DQ+L S T V A+N + F + F++++ + +PLTG GE+R
Sbjct: 239 SNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRL 298
Query: 324 DCRYVN 329
DC+ VN
Sbjct: 299 DCKKVN 304
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 158/308 (51%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VALYG H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 158/308 (51%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C ++
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 157/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G HS G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDMDLRTPTIFDNKYYVNL 238
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 157/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R FHDC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 180 bits (457), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 7/304 (2%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLE-TVT 90
+LQ +Y SCP AE +++Q V + + A +R FHDC V+ CDAS+LL+ T
Sbjct: 1 DLQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTAN 60
Query: 91 GVASEQASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
A + A + +R F+ ++ K+A+EA CP VSCADI+A +AR+ + G +
Sbjct: 61 NTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLV 210
+GRRD VS +E IP+ + ++ F + + + +V L GAHS+G HC +
Sbjct: 121 SGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFT 180
Query: 211 HRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNII 265
+RLY +DPTL P YA L+ CP + + D TP +LDN YY +
Sbjct: 181 NRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSL-DIITPSVLDNMYYTGVQ 239
Query: 266 NHKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRKDC 325
GLL DQ L ++ + V+ A N + + +F++A+ + + LTG QGE+R +C
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNC 299
Query: 326 RYVN 329
VN
Sbjct: 300 SVVN 303
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 156/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S +R F DC V CDAS+LL+ T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 299 RLNCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 155/308 (50%), Gaps = 13/308 (4%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y SCP I++ +V A S + F DC V CDAS+LL+ T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+E+ A + R F + +KAA+E+ CP VSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGID-DEGVVALYGAHSVGRVHCVNL 209
GRRDS ++L +P ++ F ++G++ +VAL G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 210 VHRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNI 264
+ RLY DPTL+ Y + L+G CP + + D TP I DN YY N+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL---NGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 265 INHKGLLIVDQQLASDPRTT---PFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGL+ DQ+L S P T P V+ A + F F A+ + PLTG QG++
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 322 RKDCRYVN 329
R +CR VN
Sbjct: 298 RLNCRVVN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 155/306 (50%), Gaps = 11/306 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
L +YA +CP A +++ V Q + S +R FHDC V CDAS+LL+
Sbjct: 3 SLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGS 62
Query: 92 VASEQ-ASERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+ SE+ A + R F V IK ALE CP VSC D++AL+++ + + GGP +
Sbjct: 63 IISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVD 122
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLV 210
GRRD+ + A IP+ ++ S F+++G++ +VAL GAH+ GR C
Sbjct: 123 LGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFS 182
Query: 211 HRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNII 265
+RL+ DPTL+ L+ CP + D TP DNNY+ N+
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNL---DLSTPDAFDNNYFTNLQ 239
Query: 266 NHKGLLIVDQQLAS--DPRTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRK 323
++ GLL DQ+L S T V A+N + F + F++++ + +PLTG GE+R
Sbjct: 240 SNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRL 299
Query: 324 DCRYVN 329
DC+ N
Sbjct: 300 DCKKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 159/308 (51%), Gaps = 19/308 (6%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L + YA+SCP +I+++QV A S +R FHDC V CDASLLL+ G
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD---G 57
Query: 92 VASEQASERSF-GMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
SE+ + + R F+ + TIKAA+E CP VSCADI+ L+AR+ +V+ GGP +
Sbjct: 58 ADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLV 210
GR+D V+ +P+ + + ++ F ++ ++ VVAL GAH+ G+ C
Sbjct: 118 LGRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFS 176
Query: 211 HRLYPTV-----DPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNII 265
+RL+ D TL+ L+ CP ++ + A DR T DNNY+KN++
Sbjct: 177 NRLFNFTGAGNPDATLETSLLSNLQTVCPL---GGNSNITAPLDRSTTDTFDNNYFKNLL 233
Query: 266 NHKGLLIVDQQLASDP----RTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEV 321
KGLL DQ L S T V+ + + S F F+ A++ N G GEV
Sbjct: 234 EGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFT--CAMIRMGNISNGASGEV 291
Query: 322 RKDCRYVN 329
R +CR +N
Sbjct: 292 RTNCRVIN 299
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 149/306 (48%), Gaps = 11/306 (3%)
Query: 32 ELQFNYYAQSCPKAEEIIKQQVVQLYYKHGNTAVSWVRNLFHDCAVKSCDASLLLETVTG 91
+L +Y ++CP I+ + + S +R FHDC V+ CD S+LL
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 92 VASEQASERSF-GMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIK 150
+ SEQ + + +R V+ IK A+E CP VSCADI+A++A V+ GGP P+
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 151 TGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLV 210
GRRDS + + +P ++ + F G++ +V L G H+ GR C +
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFI 180
Query: 211 HRLY-----PTVDPTLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNII 265
+RLY DPTL+ Y E L+ RCP + D TP DN YY N++
Sbjct: 181 NRLYNFSNTGNPDPTLNTTYLEVLRARCPQ---NATGDNLTNLDLSTPDQFDNRYYSNLL 237
Query: 266 NHKGLLIVDQQLASDP--RTTPFVQKMAANNSYFHEQFSRAIALLSENNPLTGDQGEVRK 323
GLL DQ+L S P T P V ++N + F F ++ + LTGD+GE+R
Sbjct: 238 QLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRL 297
Query: 324 DCRYVN 329
C +VN
Sbjct: 298 QCNFVN 303
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N + T +P
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANPN- 196
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ DN++Y N++N
Sbjct: 197 ---------------------------------VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 83 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 138
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 139 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 174
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 175 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 224
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 225 ADEDAFFADYAEAHQKLSE 243
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 186
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 187 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 237 ADEDAFFADYAEAHQKLSE 255
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 83 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 138
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 139 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 174
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 175 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 224
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 225 ADEDAFFADYAEAHQKLSE 243
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 83 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 138
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 139 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 174
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 175 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 224
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 225 ADEDAFFADYAEAHQKLSE 243
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 186
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 187 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 237 ADEDAFFADYAEAHQKLSE 255
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H
Sbjct: 151 HLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------------------- 181
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
+A + P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 182 -----EASGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 237 ADEDAFFADYAEAHQKLSE 255
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 186
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 187 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 237 ADEDAFFADYAEAHQKLSE 255
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 83 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 138
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 139 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 174
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 175 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 224
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 225 ADEDAFFADYAEAHQKLSE 243
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 186
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 187 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 237 ADEDAFFADYAEAHQKLSE 255
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 186
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 187 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 237 ADEDAFFADYAEAHQKLSE 255
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 117 LEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIA 176
L+AE P+ +S AD L+ + + GGP +P GR D E +P+
Sbjct: 95 LKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKGSD 150
Query: 177 TALSVFN-SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPT 235
VF ++G+ D+ +VAL G H++G H K R
Sbjct: 151 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERSGF 186
Query: 236 PDPDPDAVVYARNDRETPMILDNNYYKNIIN--HKGLLIV--DQQLASDPRTTPFVQKMA 291
P + N P+I DN+Y+ +++ +GLL + D+ L SDP P V K A
Sbjct: 187 EGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYA 236
Query: 292 ANNSYFHEQFSRAIALLSE 310
A+ F ++ A LSE
Sbjct: 237 ADEDAFFADYAEAHQKLSE 255
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGY---------- 187
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + DN++Y N++N
Sbjct: 188 -------------------EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGYE--------- 188
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A T + DN++Y N++N
Sbjct: 189 GPWDA-------------------------TNNVFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 124 KVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFN 183
++S AD+ L+A I +GGP IP GR D++ + + +P+ + + + VF
Sbjct: 84 QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFR 143
Query: 184 SIGIDDEGVVALYGAHSVGRVHC-VNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDA 242
+G +D+ VAL GAH+ G H + H + D + L D D
Sbjct: 144 RLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLL--------DEDW 195
Query: 243 VVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFS 302
V+ N + M L + ++ +L D L DP +V+ A +N F++ F+
Sbjct: 196 VL---NPKVEQMQLMDRATTKLM----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFA 248
Query: 303 RAIALLSE 310
A L+E
Sbjct: 249 NAFKKLTE 256
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 124 KVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFN 183
++S AD+ L+A I +GGP IP GR D++ + + +P+ + + + VF
Sbjct: 85 QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFR 144
Query: 184 SIGIDDEGVVALYGAHSVGRVHC-VNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDA 242
+G +D+ VAL GAH+ G H + H + D + L D D
Sbjct: 145 RLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSFFTQLL--------DEDW 196
Query: 243 VVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFS 302
V+ N + M L + ++ +L D L DP +V+ A +N F++ F+
Sbjct: 197 VL---NPKVEQMQLMDRATTKLM----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFA 249
Query: 303 RAIALLSE 310
A L+E
Sbjct: 250 NAFKKLTE 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 124 KVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFN 183
++S AD+ L+A I +GGP IP GR D++ + + +P+ + + + VF
Sbjct: 85 QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFR 144
Query: 184 SIGIDDEGVVALYGAHSVGRVHC-VNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDA 242
+G +D+ VAL GAH+ G H + H + D + L D D
Sbjct: 145 RLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLL--------DEDW 196
Query: 243 VVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAANNSYFHEQFS 302
V+ N + M L + ++ +L D L DP +V+ A +N F++ F+
Sbjct: 197 VL---NPKVEQMQLMDRATTKLM----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFA 249
Query: 303 RAIALLSE 310
A L+E
Sbjct: 250 NAFKKLTE 257
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 24/191 (12%)
Query: 125 VSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHN-DSIATAL-SVF 182
V+ AD+ L++ I GGP+IP+K GR D E +P+ S A L VF
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 183 NSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDA 242
+G++D+ +VAL GAH++GR P P +Y K P
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSR---------PDRSGWGKPE-TKYTKDGPGAPGGQSWT 196
Query: 243 VVYARNDRETPMILDNNYYKNIINHKG----LLIVDQQLASDPRTTPFVQKMAANNSYFH 298
+ + DN+Y+K+I + +L D L DP + +K AA+ F
Sbjct: 197 AQW--------LKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFF 248
Query: 299 EQFSRAIALLS 309
+ ++ A A LS
Sbjct: 249 KDYAEAHAKLS 259
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 87 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N + +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFT 200
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ Y L + +ND NN + + +L D L DP
Sbjct: 201 NEFYLNLLN----------EDWKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 243
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L EN
Sbjct: 244 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 273
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 82 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N + +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFT 195
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ Y L + +ND NN + + +L D L DP
Sbjct: 196 NEFYLNLLN----------EDWKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 238
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L EN
Sbjct: 239 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 268
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 24/210 (11%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N + +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFT 194
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ Y L + +ND NN + + +L D L DP
Sbjct: 195 NEFYLNLLN----------EDWKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 237
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L EN
Sbjct: 238 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 267
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGY---------- 187
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + DN++Y N++N
Sbjct: 188 -------------------EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHLKNSGY---------- 187
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + DN++Y N++N
Sbjct: 188 -------------------EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+++ + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 189 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 185
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N YY N++N
Sbjct: 186 GPWGA-------------------ANN------VFTNEYYLNLLNEDWKLEKNDANNEQW 220
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPQGAA 196
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ V+ D +ND NN + + +L D L DP
Sbjct: 197 NNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPGGAA 194
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ V+ D +ND NN + + +L D L DP
Sbjct: 195 NNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 87 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 190
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 191 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 226
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 227 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 189 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPGGAA 196
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ V+ D +ND NN + + +L D L DP
Sbjct: 197 NNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 190 -------------------EGPFGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 189 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 190
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 191 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 190
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 191 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 185
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 186 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 42/191 (21%)
Query: 125 VSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFN- 183
VS AD L+ + + GGP +P GR D E +P+ VF
Sbjct: 90 VSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEP---PPEGRLPDATKGSDHLRDVFGK 146
Query: 184 SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEYLKGRCPTPDPDPDAV 243
++G+ D+ +VAL G H++G H K R P
Sbjct: 147 AMGLSDQDIVALSGGHTIGAAH------------------------KERSGFEGP----- 177
Query: 244 VYARNDRETPMILDNNYYKNIINHK--GLLIV--DQQLASDPRTTPFVQKMAANNSYFHE 299
+ N P+I DN+Y+ ++ + GLL + D+ L +D P V+K AA+ F
Sbjct: 178 -WTSN----PLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFA 232
Query: 300 QFSRAIALLSE 310
++ A LSE
Sbjct: 233 DYAEAHLKLSE 243
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 DSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHLKNSGYE--------- 185
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 186 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 70/234 (29%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------- 269
E P + N +Y N++N
Sbjct: 190 -----------------------------EGPWGCANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 270 ------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPWGAA 194
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ V+ +G + D +ND NN + + +L D L DP
Sbjct: 195 NNVFTN--EGYLNLLNED---WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPGGAA 194
Query: 222 DPVYAEYLKGRCPTPD---PDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLA 278
+ V+ D DA + + M+L NY L
Sbjct: 195 NNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNY---------------SLI 239
Query: 279 SDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
DP+ V++ A + F + FS+A L EN
Sbjct: 240 QDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 83 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 186
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 187 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 222
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 223 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 271
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 189 GPWGA-------------------ANN------VFTNEFYLNLLNENWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 189 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 28/213 (13%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG---LLIVDQQLA 278
P A C T + Y E + N+ + K +L D L
Sbjct: 189 GPWGA---ANNCFTNE------FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 279 SDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
DP+ V++ A + F + FS+A L EN
Sbjct: 240 QDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 26/212 (12%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHR--LYPTVDP 219
+ + +P+ + + F + ++D VVAL GAH++G+ H N + +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV 199
Query: 220 TLDPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLAS 279
+ Y L D + + + + M+L NY L
Sbjct: 200 FTNEFYLNLLNEDWKLEKNDANNEQW--DSKSGYMMLPTNY---------------SLIQ 242
Query: 280 DPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
DP+ V++ A + F + FS+A L EN
Sbjct: 243 DPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPQGAA 191
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ V+ D +ND NN + + +L D L DP
Sbjct: 192 NNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L E+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 70/234 (29%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 77 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 131
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 132 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 175
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------- 269
R+ E P + N +Y N++N
Sbjct: 176 ------------------------KRSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDA 211
Query: 270 ------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 212 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 265
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 184
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
E G + + D + NN + + +L D L DP
Sbjct: 185 -----EGPWGAANNVFTNEKYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L EN
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 87/229 (37%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPGGAA 191
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ V+ D +ND NN + + +L D L DP
Sbjct: 192 NNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L E+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 70/234 (29%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------- 269
R+ E P + N +Y N++N
Sbjct: 185 ------------------------KRSGYEGPWGAANNVFTNEFYLNLLNENWKLEKNDA 220
Query: 270 ------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 82 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPGGAA 192
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ V+ D +ND NN + + +L D L DP
Sbjct: 193 NNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 240
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L E+
Sbjct: 241 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 270
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPGGAA 194
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ V+ D +ND NN + + +L D L DP
Sbjct: 195 NNVFTNEFYLNLLNED-----WKLEKNDA-------NNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L E+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 70/234 (29%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 86 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------- 269
R+ E P + N +Y N++N
Sbjct: 185 ------------------------KRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
Query: 270 ------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 70/234 (29%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 136 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 179
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------- 269
R+ E P + N +Y N++N
Sbjct: 180 ------------------------KRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 215
Query: 270 ------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 216 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 87 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 190
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 191 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 226
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L + L DP+ V++ A + F + FS+A L EN
Sbjct: 227 DSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 70/234 (29%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 83 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 181
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------- 269
R+ E P + N +Y N++N
Sbjct: 182 ------------------------KRSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDA 217
Query: 270 ------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 218 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLEN 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 70/234 (29%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 182
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPM-----ILDNNYYKNIINHKG------- 269
R+ E P + N +Y N++N
Sbjct: 183 ------------------------KRSGYEGPWGAANNVFTNEFYLNLLNENWKLEKNDA 218
Query: 270 ------------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 219 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 22/210 (10%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N Y
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN---SGYEGPWGAA 191
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKGLLIVDQQLASDP 281
+ V+ D +ND + Y + L D L DP
Sbjct: 192 NNVFTNEFYLNLLNED-----WKLEKNDANNEQWDSKSGYMH-------LPTDYSLIQDP 239
Query: 282 RTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+ V++ A + F + FS+A L EN
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 87 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVN 208
+ + +P+ + + F + ++D VVAL GAH++G+ H N
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 187
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 185
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 186 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 185
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 186 GPYGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 185
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 186 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ H N +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 189 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L E+
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GAH++G+ N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTELKNSGY---------- 184
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
+ A N+ + N +Y N++N
Sbjct: 185 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 82 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GA ++G+ H N +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGYE--------- 186
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 187 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 221
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 222 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 82 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GA ++G+ H N +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGYE--------- 186
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 187 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 221
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 222 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 60/229 (26%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 81 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTL 221
+ + +P+ + + F + ++D VVAL GA ++G+ H N +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGYE--------- 185
Query: 222 DPVYAEYLKGRCPTPDPDPDAVVYARNDRETPMILDNNYYKNIINHKG------------ 269
P A A N + N +Y N++N
Sbjct: 186 GPWGA-------------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 270 -------LLIVDQQLASDPRTTPFVQKMAANNSYFHEQFSRAIALLSEN 311
+L D L DP+ V++ A + F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 103 GMRN-FKYVSTIKAALEAECPLKVSCADIVALSAREGIVMLGGPRIPIKTGRRDSRVSYL 161
G++N FK++ I E P +S D+ +L + + GP+IP + GR D+
Sbjct: 84 GLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 AEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHC 206
+ + +P+ + + F + ++D VVAL GAH++G+ H
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 27/195 (13%)
Query: 125 VSCADIVALSAREGIVML----GGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALS 180
+S AD+V + G V L G PR+ GR + + A V+ IP DS+ L
Sbjct: 100 ISAADLVQFA---GAVALSNCPGAPRLEFLAGRPNKTI---AAVDGLIPEPQDSVTKILQ 153
Query: 181 VF-NSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYP--TVDPTLDP-VYAEYLKGRCPTP 236
F ++ G VV+L +HSV R + V+ P + T D V+ E L P
Sbjct: 154 RFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFP 213
Query: 237 DPDPDAVVYARNDRE--TPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAANN 294
A N E +P+ L + + L D LA DPRT Q
Sbjct: 214 G-------SANNTGEVASPLPLGSGSDTGEMR----LQSDFALAHDPRTACIWQGFVNEQ 262
Query: 295 SYFHEQFSRAIALLS 309
++ F A++ L+
Sbjct: 263 AFMAASFRAAMSKLA 277
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 27/195 (13%)
Query: 125 VSCADIVALSAREGIVML----GGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALS 180
+S AD+V + G V L G PR+ GR + + A V+ IP DS+ L
Sbjct: 100 ISAADLVQFA---GAVALSNCPGAPRLEFLAGRPNKTI---AAVDGLIPEPQDSVTKILQ 153
Query: 181 VF-NSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYP--TVDPTLDP-VYAEYLKGRCPTP 236
F ++ G VV+L +HSV R + V+ P + T D V+ E L P
Sbjct: 154 RFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFP 213
Query: 237 DPDPDAVVYARNDRE--TPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAANN 294
A N E +P+ L + + L D LA DPRT Q
Sbjct: 214 G-------SANNTGEVASPLPLGSGSDTGEMR----LQSDFALAHDPRTACIWQGFVNEQ 262
Query: 295 SYFHEQFSRAIALLS 309
++ F A++ L+
Sbjct: 263 AFMAASFRAAMSKLA 277
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 27/195 (13%)
Query: 125 VSCADIVALSAREGIVML----GGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALS 180
+S AD+V + G V L G PR+ GR + + A V+ IP DS+ L
Sbjct: 100 ISAADLVQFA---GAVALSNCPGAPRLEFLAGRPNKTI---AAVDGLIPEPQDSVTKILQ 153
Query: 181 VF-NSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYP--TVDPTLDP-VYAEYLKGRCPTP 236
F ++ G VV+L +HSV R V+ P + T D V+ E L P
Sbjct: 154 RFEDAGGFTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFP 213
Query: 237 DPDPDAVVYARNDRE--TPMILDNNYYKNIINHKGLLIVDQQLASDPRTTPFVQKMAANN 294
A N E +P+ L + + L D LA DPRT Q
Sbjct: 214 G-------SANNTGEVASPLPLGSGSDTGEMR----LQSDFALAHDPRTACIWQGFVNEQ 262
Query: 295 SYFHEQFSRAIALLS 309
++ F A++ L+
Sbjct: 263 AFMAASFRAAMSKLA 277
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 32/218 (14%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV L +HS+ VDP+
Sbjct: 131 AASPDHLVPEPQDSVDSILARMGDAGFSPVEVVWLLASHSIAAAD----------KVDPS 180
Query: 221 LDPVYAEYLKGRCPTPDPDPDAVVYARND---RETPMILDN-NYYKNIINHKGLLIVDQQ 276
+ + G D+ + R P DN ++ + + L D
Sbjct: 181 IPGTPFDSTPGVF-------DSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHL 233
Query: 277 LASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 234 LARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV L +HS+ V+ P D T
Sbjct: 131 AASPDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADGVDPSIPGTP-FDST 189
Query: 221 LDPVYAEY-----LKGRCPTPDPDPDAVVYARNDRETPMILDN-NYYKNIINHKGLLIVD 274
+ +++ LKGR P DN ++ + + L D
Sbjct: 190 PEVFDSQFFIETQLKGRL------------------FPGTADNKGEAQSPLQGEIRLQSD 231
Query: 275 QQLASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 232 HLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 81/218 (37%), Gaps = 32/218 (14%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV+L +HS+ VDP+
Sbjct: 131 AASPDHLVPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIAAAD----------KVDPS 180
Query: 221 LDPVYAEYLKGRCPTPDPDPDAVVYARND---RETPMILDN-NYYKNIINHKGLLIVDQQ 276
+ + G D+ + R P DN ++ + + L D
Sbjct: 181 IPGTPFDSTPGVF-------DSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHL 233
Query: 277 LASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 234 LARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV L +HS+ V+ P D T
Sbjct: 131 AASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADGVDPSIPGTP-FDST 189
Query: 221 LDPVYAEY-----LKGRCPTPDPDPDAVVYARNDRETPMILDN-NYYKNIINHKGLLIVD 274
+ +++ LKGR P DN ++ + + L D
Sbjct: 190 PEVFDSQFFIETQLKGRL------------------FPGTADNKGEAQSPLQGEIRLQSD 231
Query: 275 QQLASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 232 HLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV L +HS+ V+ P D T
Sbjct: 131 AASPDHLVPEGFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTP-FDST 189
Query: 221 LDPVYAEY-----LKGRCPTPDPDPDAVVYARNDRETPMILDN-NYYKNIINHKGLLIVD 274
+ +++ LKGR P DN ++ + + L D
Sbjct: 190 PEVFDSQFFIETQLKGRL------------------FPGTADNKGEAQSPLQGEIRLQSD 231
Query: 275 QQLASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 232 HLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV L +HS+ V+ P D T
Sbjct: 131 AASPDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTP-FDST 189
Query: 221 LDPVYAEY-----LKGRCPTPDPDPDAVVYARNDRETPMILDN-NYYKNIINHKGLLIVD 274
+ +++ LKGR P DN ++ + + L D
Sbjct: 190 PEVFDSQFFIETQLKGRL------------------FPGTADNKGEAQSPLQGEIRLQSD 231
Query: 275 QQLASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 232 HLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV L +HS+ V+ P D T
Sbjct: 131 AASPDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTP-FDST 189
Query: 221 LDPVYAEY-----LKGRCPTPDPDPDAVVYARNDRETPMILDN-NYYKNIINHKGLLIVD 274
+ +++ LKGR P DN ++ + + L D
Sbjct: 190 PEVFDSQFFIETQLKGRL------------------FPGTADNKGEAQSPLQGEIRLQSD 231
Query: 275 QQLASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 232 HLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV L +HS+ V+ P D T
Sbjct: 131 AASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTP-FDST 189
Query: 221 LDPVYAEY-----LKGRCPTPDPDPDAVVYARNDRETPMILDN-NYYKNIINHKGLLIVD 274
+ +++ LKGR P DN ++ + + L D
Sbjct: 190 PEVFDSQFFIETQLKGRL------------------FPGTADNKGEAQSPLQGEIRLQSD 231
Query: 275 QQLASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 232 HLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 32/218 (14%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV L +HS+ VDP+
Sbjct: 131 AASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAAD----------KVDPS 180
Query: 221 LDPVYAEYLKGRCPTPDPDPDAVVYARND---RETPMILDN-NYYKNIINHKGLLIVDQQ 276
+ + G D+ + R P DN ++ + + L D
Sbjct: 181 IPGTPFDSTPGVF-------DSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHL 233
Query: 277 LASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 234 LARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPT 220
A + +P DS+ + L+ G VV L +HS+ V+ P D T
Sbjct: 131 AASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVDPSIPGTP-FDST 189
Query: 221 LDPVYAEY-----LKGRCPTPDPDPDAVVYARNDRETPMILDN-NYYKNIINHKGLLIVD 274
+ +++ LKGR P DN ++ + + L D
Sbjct: 190 PEVFDSQFFIETQLKGRL------------------FPGTADNKGEAQSPLQGEIRLQSD 231
Query: 275 QQLASDPRTTPFVQKMAANNSYFHEQFSRA---IALLSEN 311
LA DP+T Q M N +F+ +ALL ++
Sbjct: 232 HLLARDPQTACEWQSMVNNQPKIQNRFAATMSKMALLGQD 271
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVN 208
A + +P DS+ + L+ G VV L +HS+ V+
Sbjct: 131 AASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVN 208
A + +P DS+ + L+ G VV L +HS+ V+
Sbjct: 131 AASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSV 201
A + +P DS+ + L+ G VV L +HS+
Sbjct: 131 AASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSI 171
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 106 NFKYVSTIKAALEAECPL----KVSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSY 160
NF + I + A+ P +S D + + G+ GG RIP GR D+
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDA---V 130
Query: 161 LAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSVGRVHCVN 208
A + +P DS+ + L+ G VV L +HS+ V+
Sbjct: 131 AASPDHLVPEPFDSVDSILARMGDAGFSPVEVVYLLASHSIAAADKVD 178
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 73/192 (38%), Gaps = 29/192 (15%)
Query: 125 VSCADIVALSAREGIVML-GGPRIPIKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFN 183
VS D++ +A G+ G PR+ TGR S IP +++ L F
Sbjct: 111 VSFGDLIQFAAAVGMSNCPGSPRLEFLTGRS---NSSQPSPPSLIPGPGNTVTAILDRFG 167
Query: 184 SIGIDDEGVVALYGAHSVGRVHCVNLVHRLYPTVDPTLDPVYAEY-----LKGRCPTPDP 238
G + VV L AHS+ +N P +D T ++ LKG T P
Sbjct: 168 DAGFSPDEVVDLLAAHSLASQEGLNSAIFRSP-LDSTPQVFDTQFYIETLLKG---TTQP 223
Query: 239 DPDAVVYARNDRETPMILDNNYYKNIINHKGLLI-VDQQLASDPRTTPFVQKMAANNSYF 297
P ++ +A P G I D LA D RT Q M ++N
Sbjct: 224 GP-SLGFAEELSPFP--------------GGFRIRSDALLARDSRTACRWQSMTSSNEVM 268
Query: 298 HEQFSRAIALLS 309
++F A+A +S
Sbjct: 269 GQRFRAAMAKMS 280
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 99 ERSFGMRNFKYVSTIKAALEAECPLKVSCADIVALSAREGIV-MLGGPRIPIKTGRRDSR 157
E +F + NF T + + VS D V + G GGPR+ GR S
Sbjct: 79 ETAF-IPNFGLEFTTEGFIPFALAHGVSFGDFVQFAGAVGAANCAGGPRLQFLAGR--SN 135
Query: 158 VSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEGVVALYGAHSV 201
+S + + +P+ DS L+ IG VV L +HS+
Sbjct: 136 ISQPSP-DGLVPDPTDSADKILARMADIGFSPTEVVHLLASHSI 178
>pdb|1UYJ|A Chain A, Clostridium Perfringens Epsilon Toxin Shows Structural
Similarity With The Pore Forming Toxin Aerolysin
pdb|1UYJ|B Chain B, Clostridium Perfringens Epsilon Toxin Shows Structural
Similarity With The Pore Forming Toxin Aerolysin
pdb|1UYJ|C Chain C, Clostridium Perfringens Epsilon Toxin Shows Structural
Similarity With The Pore Forming Toxin Aerolysin
Length = 296
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 149 IKTGRRDSRVSYLAEVEKFIPNHNDSIATALSVFNSIGIDDEG 191
I+ GR +++ +YL +EK+ PN A++ F+ + I+ +G
Sbjct: 24 IEKGRYNTKYNYLKRMEKYYPN-------AMAYFDKVTINPQG 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,139,337
Number of Sequences: 62578
Number of extensions: 371131
Number of successful extensions: 1120
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 193
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)