BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020144
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CCB4|VPS53_MOUSE Vacuolar protein sorting-associated protein 53 homolog OS=Mus
musculus GN=Vps53 PE=2 SV=1
Length = 832
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 158/264 (59%), Gaps = 7/264 (2%)
Query: 14 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 73
+IC I+++AEYC T+ L E + + +D L + ++++ D FS VI+ ++ LV L+
Sbjct: 551 LICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSIQLLVQDLD 610
Query: 74 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 131
D + M+++PW ++E VGDQS YV + + + ++P++ L+ YF F K
Sbjct: 611 AACDPALIAMSKMPWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670
Query: 132 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNA--ASYTKFVS 189
A+S P+F ++FKCK IS GA+Q+LLDT ++K +LLD+PS+G Q ASYTK V
Sbjct: 671 ANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVV 730
Query: 190 REMSKAEALLKVILSPVDSV---ADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 246
+ M++AE +LKV+++P + + D Y LL + FQ+IL++KGLK+++Q ++L+
Sbjct: 731 KGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNSETFQKILDMKGLKRSEQSSMLELL 790
Query: 247 NKHGPGTTQPTIAPSVVPAAPPAP 270
+ P T S + P P
Sbjct: 791 RQRLPAPPSGTEGSSTLSLIAPTP 814
>sp|Q5ZLD7|VPS53_CHICK Vacuolar protein sorting-associated protein 53 homolog OS=Gallus
gallus GN=VPS53 PE=2 SV=1
Length = 831
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 154/246 (62%), Gaps = 7/246 (2%)
Query: 14 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 73
+IC I+++AEYC T+ L E + + +D+ L + ++++ D FS VI+ ++ LV L+
Sbjct: 550 LICSILSTAEYCLATTQQLEEKLKEKVDASLVERINLTGETDTFSIVISNSIQLLVQDLD 609
Query: 74 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 131
D + M+++ W ++E VGDQS YV + + + ++P++ L+ YF F K
Sbjct: 610 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 669
Query: 132 ASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNA--ASYTKFVS 189
A+S P+F ++FKCK IS GA+Q+LLDT ++K +LLD+PS+G Q ASYT+ V
Sbjct: 670 ANSFIPKFINHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTRIVV 729
Query: 190 REMSKAEALLKVILSPVDS---VADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDF 246
+ M++AE +LKV+++P + D Y LL + + FQ+IL++KGLK+++Q ++L+ F
Sbjct: 730 KGMTRAEMILKVVMAPHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKRSEQSSMLELF 789
Query: 247 NKHGPG 252
+ P
Sbjct: 790 RQRLPA 795
>sp|P34561|VPS53_CAEEL Vacuolar protein sorting-associated protein 53 homolog
OS=Caenorhabditis elegans GN=vps-53 PE=3 SV=3
Length = 798
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 150/259 (57%), Gaps = 13/259 (5%)
Query: 6 RISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKAL 65
R++ + ++C I+ +A++C +TS L E +S+ I GVD+S+ + F ++ ++L
Sbjct: 483 RLTPDQQFLVCCILATADWCAETSIQLQEKLSQRIP-----GVDISQETEAFYSITNQSL 537
Query: 66 VTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSP--IY 123
LV +E+ D + +++V W +++ VGD+S ++ + L ++P++ +LS Y
Sbjct: 538 QVLVQDVESTCDAALQSISKVNWTAVDCVGDESPFIGSMRAHLRQAVPLIRDMLSDRRKY 597
Query: 124 FQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNA-- 181
F F KLA+ L +F ++F+C+ IS GA+Q+LL+T ++KT LL +PS+ ++
Sbjct: 598 FAHFCLKLATQLAHKFVGSLFRCRTISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPP 657
Query: 182 ASYTKFVSREMSKAEALLKVI---LSPVDSVADTYRALLPEGTPMEFQRILELKGLKKAD 238
+Y V+ ++KAE +LKV+ L VD + Y LLP E Q++LE+KG+K+ +
Sbjct: 658 TAYVTSVNAALTKAEMILKVVMCSLETVDEFVEQYIKLLPASDAAEMQKVLEMKGVKRQE 717
Query: 239 QQTILDDFN-KHGPGTTQP 256
+L+ + K G + P
Sbjct: 718 HSAVLNAYRLKIGASGSDP 736
>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting-associated protein 53 homolog OS=Homo
sapiens GN=VPS53 PE=1 SV=1
Length = 699
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 14 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 73
+IC I+++AEYC T+ L E + + +D L + ++++ D FS VI+ ++ LV L+
Sbjct: 551 LICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLD 610
Query: 74 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 131
D + M+++ W ++E VGDQS YV + + + ++P++ L+ YF F K
Sbjct: 611 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCVKF 670
Query: 132 ASSLGPRFYANIFKCKHISETGAQQM 157
A+S P+F ++FKCK IS GA+Q+
Sbjct: 671 ANSFIPKFITHLFKCKPISMVGAEQV 696
>sp|Q5R5J4|VPS53_PONAB Vacuolar protein sorting-associated protein 53 homolog OS=Pongo
abelii GN=VPS53 PE=2 SV=1
Length = 699
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 14 VICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLE 73
+IC I+++AEYC T+ L E + + +D L + ++++ D FS VI+ ++ LV L+
Sbjct: 551 LICSILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLD 610
Query: 74 TKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI--YFQFFLDKL 131
D + M+++ W ++E VGDQS YV + + + ++P++ L+ YF F K
Sbjct: 611 AACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKF 670
Query: 132 ASSLGPRFYANIFKCKHISETGAQQM 157
A+S P+F ++FKCK IS GA+Q+
Sbjct: 671 ANSFIPKFITHLFKCKPISMVGAEQV 696
>sp|P87129|VPS53_SCHPO Vacuolar protein sorting-associated protein 53
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps53 PE=1 SV=1
Length = 756
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 12/245 (4%)
Query: 19 VNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDN 78
+N+AEY ++T+ +L + +I + + D + SEV + VI+ + TL+ KF+N
Sbjct: 464 LNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLE----VISSSRGTLLKFATGKFEN 519
Query: 79 ----EMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLS-PIYFQFFLDKLAS 133
++ ++++ ++E+VGDQS YV G +T+ S++ ++ + F D+
Sbjct: 520 VLNSDLEPLSKMDLKNIETVGDQSSYVGGAVQNMTAKASEFLSVVDLNMFARNFCDRSCE 579
Query: 134 SLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMS 193
S +F I+ K ISE GA+Q+LLD + K LL +P L + S SY ++ M
Sbjct: 580 SFTRQFLNAIYLAKPISEVGAEQLLLDLYSFKNALLKLPDLKQDYSITDSYINHLTIFMG 639
Query: 194 KAEALLKVILSPVDSVA---DTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHG 250
E +LK +L+P A +Y L+ + + F +LELKG+ K+D + L F+
Sbjct: 640 YIETVLKTLLTPASPKAGFIQSYIFLVKDRSVTNFTVLLELKGVGKSDISSFLQQFSDFV 699
Query: 251 PGTTQ 255
T Q
Sbjct: 700 KKTPQ 704
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1
SV=1
Length = 1451
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 169 LDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTY 213
L+ PS+ N + + E+SK E+LLK+ +P +SV D++
Sbjct: 1063 LEEPSINHDKQNNGEFVNYNDSEVSKRESLLKIRSTPNESVDDSF 1107
>sp|Q3KSM3|RDRP_PRV RNA-directed RNA polymerase OS=Pieris rapae virus PE=3 SV=1
Length = 1014
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 222 PMEFQRILELKGLKKADQQTILDDFNKHGPGTTQPTIAPSVVPAAPPAPPSSVIPNSASA 281
P+ F + K L + D Q + D + QP + VP+ P PPS+ PN A
Sbjct: 891 PVVFDTYYDHKQLAEVDGQLVGTDLHIKEEDERQPETSIDSVPSTGP-PPSNGDPN---A 946
Query: 282 GFITSREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKL 327
G + + GR T G L LT+A R+ P RKL
Sbjct: 947 GGKPTDGPSKGKRKVKGRRPRTAGDPATLRLTDAGSSRRVKPPRKL 992
>sp|Q24592|JAK_DROME Tyrosine-protein kinase hopscotch OS=Drosophila melanogaster GN=hop
PE=1 SV=2
Length = 1177
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 12/60 (20%)
Query: 204 SPVDSVADTYRALLPEGTPMEFQRI------------LELKGLKKADQQTILDDFNKHGP 251
SPV V+ T + L +G MEF R+ L+L GL AD T++ +++++GP
Sbjct: 605 SPVKDVSVTMKMLKSDGNFMEFFRLAQTWSLIQSPQFLKLYGLTLADPYTMVMEYSRYGP 664
>sp|B4QZU1|PDE6_DROSI cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila simulans
GN=Pde6 PE=3 SV=1
Length = 1143
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 253 TTQPTIAPSVVPAAPPAPPSSVIPNSASAGFIT-----SREDVLTRAAALGRGAAT 303
TT T+A V P A P P S IP S+S+G R+ R AA R + T
Sbjct: 55 TTISTVAGGVAPGAVPGPGSGAIPASSSSGNQVKLEHHHRQSNNNRPAATNRSSET 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,062,190
Number of Sequences: 539616
Number of extensions: 4489334
Number of successful extensions: 20398
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 20302
Number of HSP's gapped (non-prelim): 96
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)