Query 020144
Match_columns 330
No_of_seqs 114 out of 201
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2180 Late Golgi protein sor 100.0 1.3E-47 2.8E-52 390.6 22.8 246 6-251 488-738 (793)
2 PF06046 Sec6: Exocyst complex 99.8 1.2E-19 2.6E-24 186.7 18.6 221 11-249 314-547 (566)
3 KOG2180 Late Golgi protein sor 99.3 8.6E-13 1.9E-17 136.5 6.0 233 23-330 424-664 (793)
4 KOG2286 Exocyst complex subuni 99.1 5E-09 1.1E-13 110.0 20.6 212 13-257 441-657 (667)
5 PF04437 RINT1_TIP1: RINT-1 / 99.1 8.9E-10 1.9E-14 112.6 13.4 210 8-236 240-480 (494)
6 PF04091 Sec15: Exocyst comple 98.9 9.7E-09 2.1E-13 99.6 11.9 190 11-209 91-285 (311)
7 COG5173 SEC6 Exocyst complex s 98.7 9E-07 2E-11 90.5 19.1 197 21-237 502-705 (742)
8 PF10474 DUF2451: Protein of u 98.1 0.00024 5.2E-09 66.6 18.0 173 60-246 54-232 (234)
9 KOG0412 Golgi transport comple 97.4 0.0096 2.1E-07 63.2 17.9 208 12-232 541-768 (773)
10 PF07393 Sec10: Exocyst comple 96.6 0.37 8.1E-06 51.8 21.4 206 10-232 481-699 (710)
11 KOG2176 Exocyst complex, subun 96.0 0.31 6.6E-06 52.7 16.4 186 18-214 551-741 (800)
12 PF10191 COG7: Golgi complex c 95.3 2 4.2E-05 47.1 20.0 153 46-214 559-751 (766)
13 KOG3691 Exocyst complex subuni 95.2 0.82 1.8E-05 50.1 16.4 186 50-249 775-970 (982)
14 KOG2218 ER to golgi transport 92.4 5.8 0.00013 43.0 16.2 122 50-171 548-675 (737)
15 PF14923 CCDC142: Coiled-coil 91.7 9.7 0.00021 39.3 16.3 114 86-204 260-379 (450)
16 PF12022 DUF3510: Domain of un 83.9 5.4 0.00012 33.8 7.4 56 88-143 24-79 (125)
17 KOG2307 Low density lipoprotei 81.7 16 0.00036 38.7 11.2 154 20-173 485-678 (705)
18 KOG2347 Sec5 subunit of exocys 78.8 19 0.00042 39.9 10.9 159 11-173 718-880 (934)
19 KOG3745 Exocyst subunit - Sec1 74.7 81 0.0018 34.7 14.2 154 62-232 589-746 (763)
20 PF10548 P22_AR_C: P22AR C-ter 70.1 15 0.00032 28.6 5.6 63 5-70 6-68 (74)
21 PF10540 Membr_traf_MHD: Munc1 64.9 90 0.0019 26.8 11.2 105 101-213 4-137 (137)
22 PF10474 DUF2451: Protein of u 62.9 85 0.0019 29.4 10.3 87 105-199 18-108 (234)
23 KOG4182 Uncharacterized conser 58.4 20 0.00043 37.6 5.5 71 123-209 748-818 (828)
24 KOG2211 Predicted Golgi transp 57.2 1.1E+02 0.0024 33.4 10.9 159 11-169 481-670 (797)
25 KOG2675 Adenylate cyclase-asso 53.8 14 0.00029 38.0 3.5 26 284-309 258-284 (480)
26 KOG1241 Karyopherin (importin) 49.9 38 0.00082 37.2 6.2 149 15-163 526-691 (859)
27 cd08816 CARD_RIG-I_1 Caspase a 47.3 60 0.0013 26.2 5.5 54 105-161 5-58 (89)
28 PF10909 DUF2682: Protein of u 45.2 47 0.001 26.2 4.5 41 30-72 28-71 (77)
29 PF02194 PXA: PXA domain; Int 43.4 2.1E+02 0.0046 24.9 9.2 69 61-139 4-73 (185)
30 KOG2033 Low density lipoprotei 42.0 81 0.0017 34.5 7.1 73 96-168 642-716 (863)
31 KOG0251 Clathrin assembly prot 42.0 4.2E+02 0.009 27.9 12.2 58 94-151 120-191 (491)
32 PF12238 MSA-2c: Merozoite sur 39.3 3.2E+02 0.007 25.4 10.6 48 99-146 13-60 (205)
33 TIGR00255 conserved hypothetic 33.7 46 0.001 32.4 3.6 72 44-115 212-287 (291)
34 KOG1328 Synaptic vesicle prote 33.1 7.5E+02 0.016 27.8 16.7 190 12-217 722-923 (1103)
35 PF07462 MSP1_C: Merozoite sur 32.1 1.4E+02 0.0031 31.6 7.0 30 222-251 223-259 (574)
36 PF09032 Siah-Interact_N: Siah 31.4 1.4E+02 0.003 23.6 5.3 43 153-203 4-46 (79)
37 COG1283 NptA Na+/phosphate sym 31.2 3.6E+02 0.0079 28.6 9.9 70 4-74 391-464 (533)
38 PF15112 DUF4559: Domain of un 30.1 5.5E+02 0.012 25.4 11.4 164 15-205 124-293 (307)
39 PF01031 Dynamin_M: Dynamin ce 29.7 4.2E+02 0.0092 25.1 9.5 134 54-197 67-208 (295)
40 PF11867 DUF3387: Domain of un 26.7 4.9E+02 0.011 25.4 9.5 106 18-134 214-326 (335)
41 PLN03162 golden-2 like transcr 26.5 3.3E+02 0.0071 27.9 8.1 41 207-247 246-287 (526)
42 smart00313 PXA Domain associat 26.0 2E+02 0.0044 25.4 6.1 71 61-141 4-75 (176)
43 PF05859 Mis12: Mis12 protein; 25.1 1.9E+02 0.0042 24.8 5.7 58 18-80 17-75 (144)
44 PF04695 Pex14_N: Peroxisomal 24.9 1.5E+02 0.0032 25.4 4.9 44 207-250 3-51 (136)
45 PRK11820 hypothetical protein; 24.1 1.1E+02 0.0024 29.7 4.4 72 44-115 209-284 (288)
46 PF00255 GSHPx: Glutathione pe 23.0 19 0.0004 30.0 -1.0 19 14-33 22-40 (108)
47 PF02194 PXA: PXA domain; Int 22.3 4.1E+02 0.0089 23.0 7.4 63 36-117 16-78 (185)
48 PF07659 DUF1599: Domain of Un 21.7 2.8E+02 0.0061 20.9 5.2 43 27-70 16-60 (61)
49 PHA03373 tegument protein; Pro 21.7 7.1E+02 0.015 23.7 13.9 43 207-249 133-176 (247)
50 PF03564 DUF1759: Protein of u 21.7 2E+02 0.0044 24.0 5.1 43 134-176 72-114 (145)
51 COG3337 CRISPR system related 21.1 1.7E+02 0.0037 25.2 4.3 115 22-157 9-129 (134)
52 KOG1925 Rac1 GTPase effector F 20.3 4.3E+02 0.0093 28.3 7.8 58 22-91 520-577 (817)
No 1
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-47 Score=390.62 Aligned_cols=246 Identities=36% Similarity=0.606 Sum_probs=234.8
Q ss_pred cCCccchhhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC
Q 020144 6 RISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR 85 (330)
Q Consensus 6 ~~s~e~~~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~ 85 (330)
+++.+++..+|++++||+||.+|+.|||++++|+++..|..+|||+.+.+.|+.+++.|++.+|..+++.|+|.+..|.+
T Consensus 488 ~~t~d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk 567 (793)
T KOG2180|consen 488 RFTIDQLLDICCILSTAEYCLATTIQLEKKLKEIVDASYIKGVSFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSK 567 (793)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCCcCccHHHHHHHHhhhHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHH
Q 020144 86 VPWGSLESVGDQSEYVNGINMILTSSIPVLGSLL--SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQA 163 (330)
Q Consensus 86 ~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L--~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~s 163 (330)
+.|.+++.|||||+|+.++..++.+.+|.|+.++ ++.||.+||++++..|+++|++.+|||+|++.+||||||+|+++
T Consensus 568 ~~~~~l~~vgDQss~v~s~~~h~~q~~~~i~~~~~~~r~~f~~fc~r~a~~f~~kf~~~l~R~k~~s~~g~EQLlldt~s 647 (793)
T KOG2180|consen 568 MQWQNLEGVGDQSSYVSSLNFHLSQFVPLIRDALALDRKYFAQFCVRLAASFIPKFLNVLFRAKPISVVGAEQLLLDTES 647 (793)
T ss_pred HHHHHhcCccccchhhHHHHHHHHhhhHHHHHHhccccchHHHhhHHHHhhcchHHHHHHHHhhhHhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCC---chhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHH
Q 020144 164 VKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSP---VDSVADTYRALLPEGTPMEFQRILELKGLKKADQQ 240 (330)
Q Consensus 164 LK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP---~e~~v~~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~ 240 (330)
+|+.|+++|+....-..-..|.+||++.|+++|++|||||+| ++.|+++|..|+||.+..+|++||+|||++|.|+.
T Consensus 648 lK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yikL~~~~~~a~~~~vLelKgv~r~d~~ 727 (793)
T KOG2180|consen 648 LKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIKLLPDPDSAEWQKVLELKGVKRDDAL 727 (793)
T ss_pred HHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCcHHHHHHHHHhcCCcHHHHH
Confidence 999999999987654444449999999999999999999998 47999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 020144 241 TILDDFNKHGP 251 (330)
Q Consensus 241 ~lle~f~~~~~ 251 (330)
..+..|+-...
T Consensus 728 ~~l~~~~~~~~ 738 (793)
T KOG2180|consen 728 WKLLWFAYNLE 738 (793)
T ss_pred HHHHHHHHhcc
Confidence 99999985543
No 2
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=99.83 E-value=1.2e-19 Score=186.70 Aligned_cols=221 Identities=17% Similarity=0.297 Sum_probs=191.4
Q ss_pred chhhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCc--ccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCC
Q 020144 11 DERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV--DMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPW 88 (330)
Q Consensus 11 ~~~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~I--df~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW 88 (330)
-+.|+|.++|.+..|.+.+++++.++.+.+++.|.+++ +++...++|.++.+.|.+.|+..+..+++|+|+.++...|
T Consensus 314 ~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~~W 393 (566)
T PF06046_consen 314 YLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFTKKW 393 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSGGG
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcCcC
Confidence 46889999999999999999999999999998888774 8999999999999999999999999999999999999999
Q ss_pred CCCCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHh----c--cCCChhhHhhHHhhHH
Q 020144 89 GSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFK----C--KHISETGAQQMLLDTQ 162 (330)
Q Consensus 89 ~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k----~--kpis~~gaeQLLLD~~ 162 (330)
..- ..|.+|+.++.+|++.++.+|++.||..|++.+...++..|+.++++ | +.....+|+||..|.+
T Consensus 394 ~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~ 466 (566)
T PF06046_consen 394 YSG-------EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAE 466 (566)
T ss_dssp CTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHH
T ss_pred cCc-------chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHH
Confidence 963 69999999999999999999999999999999999999999999977 3 2345669999999999
Q ss_pred HHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHh-cCCchhHHHHHHhh---CCCCCHHHHHHHHhhcC-CCHH
Q 020144 163 AVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVI-LSPVDSVADTYRAL---LPEGTPMEFQRILELKG-LKKA 237 (330)
Q Consensus 163 sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL-~sP~e~~v~~Y~~L---~~d~S~~~FqkIL~LKG-l~k~ 237 (330)
.++++|.++.+ ...+...+..|+.++.+| ..+++++...|..| .||.+...+..||.+|| ++|+
T Consensus 467 ~l~~~F~~~~~-----------~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~D~~r~ 535 (566)
T PF06046_consen 467 QLKSFFSKLGS-----------KSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALRGDLSRS 535 (566)
T ss_dssp HHHHHHHHHTH-----------HHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-TT--HH
T ss_pred HHHHHHHHhcc-----------cccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHH
Confidence 99999999883 789999999999999999 77777775555555 57888899999999997 9999
Q ss_pred HHHHHHHHHHhc
Q 020144 238 DQQTILDDFNKH 249 (330)
Q Consensus 238 eq~~lle~f~~~ 249 (330)
+.+.+++..+..
T Consensus 536 ~~~~il~~~~~~ 547 (566)
T PF06046_consen 536 EVKEILEILREI 547 (566)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999854
No 3
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=8.6e-13 Score=136.52 Aligned_cols=233 Identities=24% Similarity=0.172 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCCcCccHH
Q 020144 23 EYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVN 102 (330)
Q Consensus 23 DYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~ 102 (330)
.+|.....+|-+.- ||-|...+.|+.-.++|...|-.+. .+|...+++|
T Consensus 424 kkcltq~~~Ls~n~----dpl~~~~~~f~k~LreYa~kil~~~--------------------lP~~t~~s~g------- 472 (793)
T KOG2180|consen 424 KKCLTQCSELSENN----DPLIALLAVFSKWLREYAQKILLGN--------------------LPDTTSSSDG------- 472 (793)
T ss_pred HHHHHHHHHhccCC----chHHHHHHHHHHHHHHHHHHHhhcc--------------------CCcccccccC-------
Confidence 49999999998776 7777778888888888887665553 8898877776
Q ss_pred HHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCC----
Q 020144 103 GINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQT---- 178 (330)
Q Consensus 103 ~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~---- 178 (330)
...|+..+. |.--..-++.++|+|+..++++....|...-+.
T Consensus 473 -----------------~~v~~l~~~-----------------e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~kl 518 (793)
T KOG2180|consen 473 -----------------AAVYLLLRI-----------------EGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKKL 518 (793)
T ss_pred -----------------chhhhHHHh-----------------hhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122332221 333444466689999999999998888764322
Q ss_pred --CCchhhHHHHHHhHHHHHHHhhHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCCC
Q 020144 179 --SNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGPGTTQP 256 (330)
Q Consensus 179 --~~~~sY~k~V~~~~~klE~lLKvL~sP~e~~v~~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~~~~~~ 256 (330)
...++|.+.|+-.+.+.+...++..+|.....+.|..+.|+.++..++++..++|+. ||+.++..+..|..+....
T Consensus 519 ~e~~~~~~~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~~~~~l~~vg--DQss~v~s~~~h~~q~~~~ 596 (793)
T KOG2180|consen 519 KEIVDASYIKGVSFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKMQWQNLEGVG--DQSSYVSSLNFHLSQFVPL 596 (793)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHHHHHHhcCcc--ccchhhHHHHHHHHhhhHH
Confidence 456789999999999999999999999988899999999999999999999999997 9999999999997766444
Q ss_pred CccCCCCCCCCCCCCCcccCCCCCcccccchHHHHHHHHHhcCCCCchhhHHHHHHHHHhhhcC--CCccccccCC
Q 020144 257 TIAPSVVPAAPPAPPSSVIPNSASAGFITSREDVLTRAAALGRGAATTGFKRFLALTEAAKDRK--DGPFRKLFNT 330 (330)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 330 (330)
.+...+..+. +.+.-....+.++++++++++.|+.. .+.+|+..+++.||++|+|. .+|+|++||+
T Consensus 597 i~~~~~~~r~----~f~~fc~r~a~~f~~kf~~~l~R~k~----~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~ 664 (793)
T KOG2180|consen 597 IRDALALDRK----YFAQFCVRLAASFIPKFLNVLFRAKP----ISVVGAEQLLLDTESLKDALLTLPPLRSLFND 664 (793)
T ss_pred HHHHhccccc----hHHHhhHHHHhhcchHHHHHHHHhhh----HhhhHHHHHHHHHHHHHHHhhcCCchhhhccc
Confidence 4333333322 44455666788999999999999998 89999999999999999996 9999999995
No 4
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=5e-09 Score=109.98 Aligned_cols=212 Identities=14% Similarity=0.202 Sum_probs=171.7
Q ss_pred hhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCC
Q 020144 13 RVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLE 92 (330)
Q Consensus 13 ~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e 92 (330)
.|+..++|.+..|..-+.++-.+. +. +..-.|+|..+.+.+...|+..+..||+|++..++...|...
T Consensus 441 ~y~iA~~N~~~~~a~~~~~~~~~~-----d~------~~~~l~~~~~i~~~~~~~l~e~~~~d~~~~~~~lf~~~W~~g- 508 (667)
T KOG2286|consen 441 EYLIANINNNLKMAMLMVNLKSKY-----DT------LKGLLDGFIEIAKHGVSGLLEEIFLDLQPLLNKLFTKEWCAG- 508 (667)
T ss_pred HHHHHHHhchhHHHHHHHHHHhcc-----ch------hHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhch-
Confidence 567778999999988888876666 11 456789999999999999999999999999999999999964
Q ss_pred cCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCC
Q 020144 93 SVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIP 172 (330)
Q Consensus 93 ~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP 172 (330)
.-+..|+.++.+|++++.++..+. |..|.+.+...++-.|+.+|.+=|-.-.-++|+|..|...++.+|.++-
T Consensus 509 ------~~~~~Iv~T~~dy~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~l~~kr~~~~~~~~~i~~d~~~~~~~f~~~~ 581 (667)
T KOG2286|consen 509 ------SVTENIVATLDDYLPDFKELMGEY-FVRFIEEASLELVIEYLRALSKKRASIQELIEKIKSDAETLYHFFRKYG 581 (667)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHhC
Confidence 368899999999999999998887 9999999999999999999977332222589999999999999998876
Q ss_pred CCCCCCCCchhhHHHHHHhHHHHHHHhhHhcC-CchhH---HHHHHhhCCCCCHHHHHHHHhhc-CCCHHHHHHHHHHHH
Q 020144 173 SLGRQTSNAASYTKFVSREMSKAEALLKVILS-PVDSV---ADTYRALLPEGTPMEFQRILELK-GLKKADQQTILDDFN 247 (330)
Q Consensus 173 ~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~s-P~e~~---v~~Y~~L~~d~S~~~FqkIL~LK-Gl~k~eq~~lle~f~ 247 (330)
+ -|+.-..-+..+-+++.. ++|.+ +.+|...-||.+.+...+||..| |+++++.+++++..+
T Consensus 582 ~-------------~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~i~~~~~ 648 (667)
T KOG2286|consen 582 S-------------DVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKKIVDILK 648 (667)
T ss_pred c-------------chhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5 223334445566666655 77765 45566667899999999999999 899999999999886
Q ss_pred hcCCCCCCCC
Q 020144 248 KHGPGTTQPT 257 (330)
Q Consensus 248 ~~~~~~~~~~ 257 (330)
. +.+...|+
T Consensus 649 ~-~~~~~~~~ 657 (667)
T KOG2286|consen 649 E-SMGSQEPD 657 (667)
T ss_pred H-HHhhhCcC
Confidence 3 34444443
No 5
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=99.10 E-value=8.9e-10 Score=112.61 Aligned_cols=210 Identities=21% Similarity=0.327 Sum_probs=154.8
Q ss_pred CccchhhhhhhcccHHHHHHHHHHHHHHHH-----------------Hhhhhhc-cCCcccchhhhHHHHHHHHHHHHHH
Q 020144 8 SERDERVICYIVNSAEYCHKTSGDLAESVS-----------------KIIDSQL-ADGVDMSEVQDEFSAVITKALVTLV 69 (330)
Q Consensus 8 s~e~~~~ic~IINTADYC~~Ti~qLeekl~-----------------e~id~~~-ke~Idf~~e~D~F~~visk~I~~LV 69 (330)
+...+..+|.++|+|.||...+.+.+|.+- +..+..- .+.--|+++-..|..+..+....++
T Consensus 240 ~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv 319 (494)
T PF04437_consen 240 GDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIV 319 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999998887432 2222110 1334699999999999999999999
Q ss_pred HHHhhhchHHhhcccC-CCCCCCCcC-----CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHh
Q 020144 70 LGLETKFDNEMAGMTR-VPWGSLESV-----GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANI 143 (330)
Q Consensus 70 ~~le~~le~a~~~m~~-~nW~~~e~V-----gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I 143 (330)
+.+...++..++...+ ..|...+.. ...|+-.......|+..+..+...|++..|..+...+++.+..-+++.|
T Consensus 320 ~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~I 399 (494)
T PF04437_consen 320 DRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESI 399 (494)
T ss_dssp HHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 999887665 4678888999999999999999999999999999999999999999999
Q ss_pred HhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCchh-------HHHHHHhh
Q 020144 144 FKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDS-------VADTYRAL 216 (330)
Q Consensus 144 ~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~e~-------~v~~Y~~L 216 (330)
+.....+..||.||..|+..|...|.. |...-++.|.++...+++|.-|.+. +-..|..
T Consensus 400 l~~n~Fs~~Ga~Ql~~D~~~L~~~~~~-------------~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~- 465 (494)
T PF04437_consen 400 LMSNKFSRAGAAQLQFDMRALFSVFSQ-------------YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIK- 465 (494)
T ss_dssp TTTS-B-HHHHHHHHHHHHHHHTTS---------------TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHH-
T ss_pred hhcCeeChhHHHHHHHHHHHHHHHHHh-------------hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhcc-
Confidence 999999999999999999998877744 4445567788888889998877532 1222222
Q ss_pred CCCCCHHHHHHHHhhcCCCH
Q 020144 217 LPEGTPMEFQRILELKGLKK 236 (330)
Q Consensus 217 ~~d~S~~~FqkIL~LKGl~k 236 (330)
..++.++|+--|+..
T Consensus 466 -----~~~~~~~l~~lgI~~ 480 (494)
T PF04437_consen 466 -----NENARKLLEELGISH 480 (494)
T ss_dssp -----HT--SHHHHHTT-SS
T ss_pred -----chHHHHHHHHCCCCc
Confidence 356666666666665
No 6
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=98.92 E-value=9.7e-09 Score=99.64 Aligned_cols=190 Identities=18% Similarity=0.247 Sum_probs=129.2
Q ss_pred chhhhhhhcccHHHHHHHHHHHHHHHHHhhhhh-ccC-CcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCC
Q 020144 11 DERVICYIVNSAEYCHKTSGDLAESVSKIIDSQ-LAD-GVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPW 88 (330)
Q Consensus 11 ~~~~ic~IINTADYC~~Ti~qLeekl~e~id~~-~ke-~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW 88 (330)
.+..++=|+...+|++.....||+-+......+ ..+ .+.+ ...+.|.+..+.|-+.|...+..+++--+ ++...||
T Consensus 91 ~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~~~~~l-~a~~~f~~~r~~Ae~~I~~lv~~KIDe~l-ela~yDW 168 (311)
T PF04091_consen 91 NLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAGGHIRL-KATKMFKDARKAAEKRIFELVNSKIDEFL-ELAEYDW 168 (311)
T ss_dssp -HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-----------------S---TTHHHHHHHHHHHHHHHHHH-TT--TT-
T ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccchHhHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccce
Confidence 455677788888999999999999998887432 112 2334 34599999999999999999999999999 9999999
Q ss_pred CCCCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHh--HhccCCChhhHhhHHhhHHHHHH
Q 020144 89 GSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANI--FKCKHISETGAQQMLLDTQAVKT 166 (330)
Q Consensus 89 ~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I--~k~kpis~~gaeQLLLD~~sLK~ 166 (330)
...+..++.|.||.++...|+..+..+...|++.+....|-.....+..+|++.| -.+|.|++.|.+|+.+|+..+..
T Consensus 169 ~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~ 248 (311)
T PF04091_consen 169 TPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLES 248 (311)
T ss_dssp -------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHH
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888899999999999999999999999999 66899999999999999999999
Q ss_pred HHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCc-hhH
Q 020144 167 ILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV-DSV 209 (330)
Q Consensus 167 ~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~-e~~ 209 (330)
+..++|..+.+ ...+...|..+..++-++++.. |.|
T Consensus 249 f~~~~~~~~~~-------~~~L~~~F~eLrQlvdLl~s~~~~~y 285 (311)
T PF04091_consen 249 FADSLPVPGNN-------IPSLRETFAELRQLVDLLLSDDWEEY 285 (311)
T ss_dssp HHTT-SSSS---------SSTTGGGGHHHHHHHHHHH-------
T ss_pred HHHhCcCcccc-------cccHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999876543 2345566788889999999863 444
No 7
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=98.73 E-value=9e-07 Score=90.48 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=153.8
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCCcCcc
Q 020144 21 SAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEY 100 (330)
Q Consensus 21 TADYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~Y 100 (330)
-|+|.-.+...--+.+.+-...+..+. |...-|+|.+|..-+...|+..+..+|.|++.+++..+|+.. +-
T Consensus 502 ~A~y~~~~~sntfeLitseye~d~~~~--lgkTvDgfi~I~~~s~~~l~~~i~~d~~pa~~~iF~~~Wy~g-------S~ 572 (742)
T COG5173 502 IAQYITSLPSNTFELITSEYENDEVKE--LGKTVDGFIDILKASNTFLAEFIIYDCQPAIDKIFTDEWYGG-------SV 572 (742)
T ss_pred HHHHHHhcchhhhhhhhHHHHHHHHHH--hcccchhHHHHHhhhhHHHHHHHHHhhhhhHHHhcCcccccc-------ch
Confidence 477777777766666666665554444 778889999999999999999999999999999999999953 46
Q ss_pred HHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc-cCCChh-hHhhHHhhHHHHHHHHhhCCCCCCCC
Q 020144 101 VNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC-KHISET-GAQQMLLDTQAVKTILLDIPSLGRQT 178 (330)
Q Consensus 101 V~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~-kpis~~-gaeQLLLD~~sLK~~Ll~LP~~~~~~ 178 (330)
+..|+.++++++.++.+++++..|-+|.+.+..+++.+|+.+|.+= ..+..- +.|||.-|..-+...|..+-.
T Consensus 573 ~k~IvdTl~dyl~D~~~~M~~~lFv~Fi~e~s~~~vi~yl~~l~~k~a~~~~~na~~~lksD~~~~y~~f~~y~d----- 647 (742)
T COG5173 573 TKVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLGRKRASIAEENASRTLKSDHTKLYEMFSGYGD----- 647 (742)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHhhCC-----
Confidence 8899999999999999999999999999999999999999999663 223222 689999999999999987765
Q ss_pred CCchhhHHHHHHhHHHHHHHhhHhcC-Cchh---HHHHHHhhCCCCCHHHHHHHHhhc-CCCHH
Q 020144 179 SNAASYTKFVSREMSKAEALLKVILS-PVDS---VADTYRALLPEGTPMEFQRILELK-GLKKA 237 (330)
Q Consensus 179 ~~~~sY~k~V~~~~~klE~lLKvL~s-P~e~---~v~~Y~~L~~d~S~~~FqkIL~LK-Gl~k~ 237 (330)
..+|...+.-++.++=.+.+ |.|. ++..|....+|...+-...||.-+ ++.++
T Consensus 648 ------~e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lkeiYwD~~~sli~~Ilk~R~Dl~~s 705 (742)
T COG5173 648 ------PEDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIYWDIKKSLIKTILKKRQDLTES 705 (742)
T ss_pred ------HHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHhccchHHHHHHHHHhhhhhHHH
Confidence 46677666654444333333 5554 344555555676567778888876 88887
No 8
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=98.13 E-value=0.00024 Score=66.61 Aligned_cols=173 Identities=16% Similarity=0.210 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCCcCccHHHHHHHHhhhHHHHhh-----hccHHHHHHHHHHHHHH
Q 020144 60 VITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGS-----LLSPIYFQFFLDKLASS 134 (330)
Q Consensus 60 visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~-----~L~~~Y~~~fcDKlv~~ 134 (330)
+..-+....+..+ -+++.....|.++.|.--|-..+.|+||..+...+..+...+.+ .+++.-...+.+.++..
T Consensus 54 Lr~~iy~~~a~~~-l~~~~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~ 132 (234)
T PF10474_consen 54 LREPIYKCVASRL-LDLEQILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFF 132 (234)
T ss_pred HHHHHHHHHHHHH-cCHHHHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4444444444433 36678889999999987677778999999999999987776633 33666777778888888
Q ss_pred HHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCchhHHHHHH
Q 020144 135 LGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYR 214 (330)
Q Consensus 135 fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~e~~v~~Y~ 214 (330)
+...+++..=+.|+-|..|--+|.||.+.+...|-.+-... +.| +.+-.|+.+|..=-|.+.+.+==.
T Consensus 133 ~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~~---~~p---------~~~~Ve~YIKAyYl~e~e~~~W~~ 200 (234)
T PF10474_consen 133 AFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGIR---PIP---------NREYVENYIKAYYLPEEELEEWIR 200 (234)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCCC---CCc---------cHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888999999999999999999999997775422 222 234445677777777654333233
Q ss_pred hhCCCCCHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 020144 215 ALLPEGTPMEFQRILELK-GLKKADQQTILDDF 246 (330)
Q Consensus 215 ~L~~d~S~~~FqkIL~LK-Gl~k~eq~~lle~f 246 (330)
.. ++.|...+..++..- +.+|.+.+.+++..
T Consensus 201 ~h-~eYs~~ql~~Lv~~~~~~~kk~r~~ll~~i 232 (234)
T PF10474_consen 201 TH-TEYSKKQLVGLVNCAAASKKKTRQRLLNAI 232 (234)
T ss_pred hC-cccCHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 33 677888887777776 55788888887654
No 9
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0096 Score=63.15 Aligned_cols=208 Identities=13% Similarity=0.192 Sum_probs=157.4
Q ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCc----------ccchhhhHHHHHHHHHHHHHHHH-HhhhchHHh
Q 020144 12 ERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV----------DMSEVQDEFSAVITKALVTLVLG-LETKFDNEM 80 (330)
Q Consensus 12 ~~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~I----------df~~e~D~F~~visk~I~~LV~~-le~~le~a~ 80 (330)
....-.-+|++|-|.+-+..|-+.+.+-...-|...+ ++.+..+.|-++.+.|++.|... +-..++|.+
T Consensus 541 ~~~fl~~LNn~~ls~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi~~~i 620 (773)
T KOG0412|consen 541 KENFLTALNNADLSKEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRIRPWI 620 (773)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhhh
Confidence 3445567899987777777666666555544433322 56677789999999999999996 458999999
Q ss_pred hcccCCCCCC-CCc---CCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhh
Q 020144 81 AGMTRVPWGS-LES---VGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQ 156 (330)
Q Consensus 81 ~~m~~~nW~~-~e~---VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQ 156 (330)
-.+.+++..- .+. -+.+-+||.+....+.+.+--+++.|.+..|..|..-+++.++...=..|+||+ .+..||=|
T Consensus 621 d~f~~is~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~-FNrlG~lq 699 (773)
T KOG0412|consen 621 DTFVNISYNLSEEDYAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQ-FNRLGGLQ 699 (773)
T ss_pred hhhhhhhccccHHHHhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhH-HHhhcchH
Confidence 8888877752 122 223557999999999999999999999888888888888777777777777765 89999999
Q ss_pred HHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCchhHHHHHHhhCCC-----CCHHHHHHHHhh
Q 020144 157 MLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPE-----GTPMEFQRILEL 231 (330)
Q Consensus 157 LLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~e~~v~~Y~~L~~d-----~S~~~FqkIL~L 231 (330)
|=-|+.+|=..|...- .-.|...|.||-.|+-+|.--.+.....|+.--.. -|+++-.++|.|
T Consensus 700 LDre~r~lis~lt~~t------------~~~lRdKf~RLtQIatLLnle~~se~le~w~~~~g~~twrLt~~EVr~vl~l 767 (773)
T KOG0412|consen 700 LDRELRALISYLTGVT------------QWNLRDKFARLTQIATLLNLEKDSEILEYWGPNSGPLTWRLTPAEVRKVLAL 767 (773)
T ss_pred hhHHHHHHHHHhhccc------------chhHHHHHHHHHHHHHHHcccccchHHHhcCCCCCCceEEeCHHHHHHHHHh
Confidence 9999999988884332 35688899999999999988777777777653211 355666888888
Q ss_pred c
Q 020144 232 K 232 (330)
Q Consensus 232 K 232 (330)
|
T Consensus 768 r 768 (773)
T KOG0412|consen 768 R 768 (773)
T ss_pred h
Confidence 7
No 10
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=96.57 E-value=0.37 Score=51.81 Aligned_cols=206 Identities=12% Similarity=0.122 Sum_probs=144.0
Q ss_pred cchhhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCcc----cchhhhHHH----HHHHHHHHHHHHHHhhhchHHhh
Q 020144 10 RDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVD----MSEVQDEFS----AVITKALVTLVLGLETKFDNEMA 81 (330)
Q Consensus 10 e~~~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~Id----f~~e~D~F~----~visk~I~~LV~~le~~le~a~~ 81 (330)
+++. -.-+||.|+-+...++.--+ +.+-|-.....+ +...+..|. +-++.+++..+..+...++..+.
T Consensus 481 ~~l~-fl~~i~~~~~i~~l~~~~~~---~~l~pl~~~~~~~~~~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~iL~ 556 (710)
T PF07393_consen 481 PPLV-FLELINQADTILQLLQIFYK---EELLPLIQSSPDFLNECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEFILS 556 (710)
T ss_pred CCcc-HHHHHHHHHHHHHHHHHHHH---HHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 44578888877777664432 222222222221 223333333 33445555555556666667777
Q ss_pred cccCCCCCCCCc-C---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhH
Q 020144 82 GMTRVPWGSLES-V---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQM 157 (330)
Q Consensus 82 ~m~~~nW~~~e~-V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQL 157 (330)
.-.+.+...-+. . ...++....++..|...+..+...+....+..|+-.+...|...++.++.| .+++..||=||
T Consensus 557 ~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~~h~kk-~~vs~~Gg~~l 635 (710)
T PF07393_consen 557 EQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLLKHLKK-FTVSSTGGLQL 635 (710)
T ss_pred hcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHh-CccCchhHHHH
Confidence 555566654222 2 258889999999999999999999998889999999999999999999977 56999999999
Q ss_pred HhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCchhHHHHHHhhCC-CCCHHHHHHHHhhc
Q 020144 158 LLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLP-EGTPMEFQRILELK 232 (330)
Q Consensus 158 LLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~e~~v~~Y~~L~~-d~S~~~FqkIL~LK 232 (330)
.-|+.....++.++- .+.|...|+.|-.+-.++..++|.+.+-...... .-+..+....+.+|
T Consensus 636 ~~Dl~~Y~~~~~~~~------------~~~v~~~F~~L~~l~nl~~v~~~~l~~~~~~~~~~~~~~~~i~~fi~~R 699 (710)
T PF07393_consen 636 IKDLNEYQDFIRSWG------------IPSVDEKFEALKELGNLFIVDPENLKELCREGQLGRFSPEEIYEFIQRR 699 (710)
T ss_pred HHHHHHHHHHHHHcC------------CchHHHHHHHHHHHHhheeecHHHHHHHHhhccccCCCHHHHHHHHHHh
Confidence 999999999998883 3679999999999999999998766655544332 23445555555544
No 11
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.31 Score=52.72 Aligned_cols=186 Identities=15% Similarity=0.174 Sum_probs=127.2
Q ss_pred hcccHHHHHHHHHHHHHHHHHhhhhhccCCcccchh--hhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCC
Q 020144 18 IVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEV--QDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVG 95 (330)
Q Consensus 18 IINTADYC~~Ti~qLeekl~e~id~~~ke~Idf~~e--~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~Vg 95 (330)
|+-+-+|...-..++.+-+.....-+..+ .+.- .=.|..--+.+-..|...+..+++.-+.-. +.+|-..|..+
T Consensus 551 I~~n~~~fe~a~~~f~~~a~~~~~~~~~~---~e~~~~s~~l~~sr~~Ae~~l~~~i~~Kid~f~~l~-~~dW~t~e~pq 626 (800)
T KOG2176|consen 551 IAANLDYFEIAADFFLEFACHLNGIPNRD---AERPSSSTKLLASRKLAETELIELIKLKIDDFLELI-EYDWTTTEVPQ 626 (800)
T ss_pred HHHHHHHHHHhhHHHHHHHHHccCCcccc---ccccccchhhhhhhhhHHHHHHHHHhhhhHHHHHHh-hccccccccCC
Confidence 33444555555556655555543322111 1111 233444445555566666777777666544 99999999999
Q ss_pred CcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc--cCCChhhHhhHHhhHHHHHHHHhhCCC
Q 020144 96 DQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC--KHISETGAQQMLLDTQAVKTILLDIPS 173 (330)
Q Consensus 96 D~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~--kpis~~gaeQLLLD~~sLK~~Ll~LP~ 173 (330)
|.|.|+..+..-|...+.....+|+-.-....|-...+.+..++++.+..+ |.|++.+++|+.+|+..+..+--+=|.
T Consensus 627 ~~~~~i~e~~~yLet~~~s~~q~LP~~v~~~v~~~~~~his~~iv~llldd~ik~is~~Ai~~fnlDv~~lEsfa~~~p~ 706 (800)
T KOG2176|consen 627 GPSEYINEMLIYLETMFSSALQILPYKVAQLVCLRELDHISTSIVGLLLDDSIKQISMGAITNFNLDVNYLESFAASPPV 706 (800)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHccchhHHHHHHhccCCCC
Confidence 999999999999999999999999988888888889999999999999876 889999999999999999988877333
Q ss_pred CCCCCCCchhhHHHHHHhHHHHHHHhhHhcCC-chhHHHHHH
Q 020144 174 LGRQTSNAASYTKFVSREMSKAEALLKVILSP-VDSVADTYR 214 (330)
Q Consensus 174 ~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP-~e~~v~~Y~ 214 (330)
.+.+. ......|=.+..++-+|++. .|.|.+.|.
T Consensus 707 ~~~~~-------~~~~~~fielrQlinLL~~~~~e~y~~~~~ 741 (800)
T KOG2176|consen 707 PPNQE-------GVLAKAFIELRQLINLLLLSDWETYLNDYG 741 (800)
T ss_pred CCccc-------chhHHHHHHHHHHHHHHHhcCHHHhhCchh
Confidence 22221 12222333444677777654 455544443
No 12
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=95.29 E-value=2 Score=47.05 Aligned_cols=153 Identities=17% Similarity=0.235 Sum_probs=112.7
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC-CCCCC--CCcCC-----C----cCccHHHHHHHHhhhHH
Q 020144 46 DGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR-VPWGS--LESVG-----D----QSEYVNGINMILTSSIP 113 (330)
Q Consensus 46 e~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~-~nW~~--~e~Vg-----D----~S~YV~~i~~~L~~~~~ 113 (330)
....|......+..+...|.....+.+...+...+..+.+ ..|.. ....+ + .+.||++|-+.|-.--.
T Consensus 559 ~~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq 638 (766)
T PF10191_consen 559 SFSLLPEARAAVSRLNQQAQDLVFDVLFSPIRQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQ 638 (766)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHH
Confidence 3446888899999988888888888899999999999987 47887 21111 2 25688888877664222
Q ss_pred HHhhhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHH
Q 020144 114 VLGSLLS----------------------------PIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVK 165 (330)
Q Consensus 114 ~i~~~L~----------------------------~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK 165 (330)
.+.+++. +..-..++++++...+..|.+.|.++..+++.|+.||..|+.=|.
T Consensus 639 ~LEp~~~~~~~al~~Al~~~~~~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~~l~~~~~~QL~~Di~Yl~ 718 (766)
T PF10191_consen 639 QLEPFAESDNSALAFALHAGKLPYPPESDEEAEEADDFADEWLGKVARATCALYLEQILEIPELSESGAKQLATDIDYLS 718 (766)
T ss_pred hhhhhhcCcchHHHHHHHhcCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 2222221 145668899999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCchhHHHHHH
Q 020144 166 TILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYR 214 (330)
Q Consensus 166 ~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~e~~v~~Y~ 214 (330)
+.|..|=... | ..+..+..+|.+|+|.|.+.-.
T Consensus 719 nVl~aLg~~~-----~-----------~~L~~~~~ll~~~~~~~~~~~~ 751 (766)
T PF10191_consen 719 NVLSALGLSP-----P-----------PNLQQLVTLLKAPPDQYAQVAK 751 (766)
T ss_pred HHHHHhCCCC-----C-----------HHHHHHHHHHcCCHHHHHHHHh
Confidence 9998875311 1 1355677778888865555443
No 13
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.82 Score=50.08 Aligned_cols=186 Identities=16% Similarity=0.241 Sum_probs=133.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC----CCCCCCCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHH
Q 020144 50 MSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR----VPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQ 125 (330)
Q Consensus 50 f~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~----~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~ 125 (330)
+++.-|.|-.+..+|+-.|=-.|-.-|=..+....+ .-|+..+ .|+.-+-|..+.+.|...-.-+...|++.=++
T Consensus 775 ~ee~~~~fq~la~~cLLlLhlEVRv~Cfh~l~~~s~~~n~~i~~~~~-s~e~D~~V~aL~k~l~~~e~klk~~L~e~k~~ 853 (982)
T KOG3691|consen 775 YEELADSFQRLAFDCLLLLHLEVRVQCFHYLNPLSKLRNTSIVNRDV-SGEPDPSVVALNKDLSTTEEKLKACLNEWKRR 853 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceeecccc-cCCCCHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 445678888999999876655665555555553333 3466543 67888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCC
Q 020144 126 FFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSP 205 (330)
Q Consensus 126 ~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP 205 (330)
+..+=+...+-..+++.-..++.+++.|..||+..+..|.+.|.++... + .-.|++.-++--++..-
T Consensus 854 yIFeGL~hL~s~~LI~~a~~i~~ln~~~ikkMcRNv~~lQQ~Lsnit~~-----------r--evdld~ar~fy~ll~nt 920 (982)
T KOG3691|consen 854 YIFEGLGHLVSSILISGAQYIERLNEGGIKKMCRNVSALQQILSNITES-----------R--EVDLDKARRFYELLQNT 920 (982)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc-----------c--ccccHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999888762 2 44566677777777665
Q ss_pred chhHHHHHHhhCCCCCHHHHHHHHhh-----cCCCH-HHHHHHHHHHHhc
Q 020144 206 VDSVADTYRALLPEGTPMEFQRILEL-----KGLKK-ADQQTILDDFNKH 249 (330)
Q Consensus 206 ~e~~v~~Y~~L~~d~S~~~FqkIL~L-----KGl~k-~eq~~lle~f~~~ 249 (330)
++.+.+....-=..-|.++...++.+ ||+-+ .-+..+++.+.+.
T Consensus 921 ~deile~v~d~~~qfse~e~~qllrls~rS~~g~~k~~~~~e~~qkl~n~ 970 (982)
T KOG3691|consen 921 ADEILEHVIDARKQFSEPELKQLLRLSYRSLKGDAKRNGRDELLQKLSNI 970 (982)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHH
Confidence 54444433332222445555555544 55533 4445555555443
No 14
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=92.44 E-value=5.8 Score=42.96 Aligned_cols=122 Identities=17% Similarity=0.261 Sum_probs=93.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCC-----cCccHHHHHHHHhhhHHHHhhhccHHHH
Q 020144 50 MSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGD-----QSEYVNGINMILTSSIPVLGSLLSPIYF 124 (330)
Q Consensus 50 f~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD-----~S~YV~~i~~~L~~~~~~i~~~L~~~Y~ 124 (330)
|.++.+....+.+.-+.-++..+-..+++..++..+.+|.+.+.-.. -|+=+......|+..+..+...+++.-|
T Consensus 548 F~~~~~~leel~~~~~~~~iv~~l~~~~~~~r~y~k~~w~s~~~~~~~~~~svS~~iv~~ld~Lr~~l~~l~~~l~~~~f 627 (737)
T KOG2218|consen 548 FEEVSNFLEELMSTWMLKLIVHLLQNLKDLLRNYKKNKWVSLEESENIGPLSVSREIVNLLDGLRRHLDDLEENLNPLDF 627 (737)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHhhhhcchhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHhhChhhH
Confidence 66777777777777777888888888899999999999988765221 1555666677777888888888888777
Q ss_pred HHHHHHHHHHH-HHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhC
Q 020144 125 QFFLDKLASSL-GPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDI 171 (330)
Q Consensus 125 ~~fcDKlv~~f-i~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~L 171 (330)
..+.--++..+ +..|...|++....+.-|++|+..|+..|...|..+
T Consensus 628 s~~~~~l~~~idv~~~~e~il~~~~f~~~~~~~f~~Da~~L~~~fs~y 675 (737)
T KOG2218|consen 628 SAIWRNLQENIDVYVFEEIILKNHKFESSGLFQFVHDAKRLLEVFSEY 675 (737)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHhccc
Confidence 77775555544 444555567778899999999999999999999665
No 15
>PF14923 CCDC142: Coiled-coil protein 142
Probab=91.70 E-value=9.7 Score=39.27 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=79.2
Q ss_pred CCCCCCCcC---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc-cCCChhhHhhHHhhH
Q 020144 86 VPWGSLESV---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC-KHISETGAQQMLLDT 161 (330)
Q Consensus 86 ~nW~~~e~V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~-kpis~~gaeQLLLD~ 161 (330)
--|...-.. ...|.||....+.+-.-+-.--..+++.+----..-.+..|+-.-++.|++= -+.|..||.||+.|.
T Consensus 260 ~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~DF 339 (450)
T PF14923_consen 260 RYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQDF 339 (450)
T ss_pred chhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHHH
Confidence 567653222 2579999998888754333333356666666666677888888889999875 457899999999999
Q ss_pred HHHHHHHhh-CCCCCCCCCCchhhHH-HHHHhHHHHHHHhhHhcC
Q 020144 162 QAVKTILLD-IPSLGRQTSNAASYTK-FVSREMSKAEALLKVILS 204 (330)
Q Consensus 162 ~sLK~~Ll~-LP~~~~~~~~~~sY~k-~V~~~~~klE~lLKvL~s 204 (330)
..++..+.+ --.+.++ .=.+ .-..-|.++|..+++|+-
T Consensus 340 ~~Vr~wl~~e~~~Ls~e-----~rq~Ll~l~v~r~~dgv~~lLlq 379 (450)
T PF14923_consen 340 GYVRDWLESECSGLSPE-----LRQTLLSLEVFRRCDGVGLLLLQ 379 (450)
T ss_pred HHHHHHHHhhhccCCHH-----HHHHHhccHHHHHHHHHHHHHhc
Confidence 999999977 4443211 1111 224567889999999875
No 16
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=83.94 E-value=5.4 Score=33.83 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=48.0
Q ss_pred CCCCCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHh
Q 020144 88 WGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANI 143 (330)
Q Consensus 88 W~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I 143 (330)
|.+-+.....|.||..|..=|.++.......+.+.-...++.++++.+..+|++.+
T Consensus 24 ~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~ 79 (125)
T PF12022_consen 24 MTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIA 79 (125)
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54445677899999999999999999998888888899999999999999988764
No 17
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.67 E-value=16 Score=38.68 Aligned_cols=154 Identities=15% Similarity=0.124 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhc---cC--CcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC----CCCCC
Q 020144 20 NSAEYCHKTSGDLAESVSKIIDSQL---AD--GVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR----VPWGS 90 (330)
Q Consensus 20 NTADYC~~Ti~qLeekl~e~id~~~---ke--~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~----~nW~~ 90 (330)
.+.+-..+-.+.|-+-|..++...- .+ ++.++.-.+.+..+.-.--+.+|..+...|..-+++..- ..|-+
T Consensus 485 dd~~llqevl~elle~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~Tn 564 (705)
T KOG2307|consen 485 DDGNLLQEVLPELLESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTN 564 (705)
T ss_pred ccchHHHHHhHHHHHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhcc
Confidence 3444444555555555555543210 00 012233333343333333344555555555555554444 56877
Q ss_pred CCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHH--------------HHHHHhHhccCCChh----
Q 020144 91 LESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGP--------------RFYANIFKCKHISET---- 152 (330)
Q Consensus 91 ~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~--------------~f~~~I~k~kpis~~---- 152 (330)
-+-..-.|+||.++.+-+.....-...-|.......++.+++..+.. +=-.++-|+|.....
T Consensus 565 KevPtthSsYVv~aLrpvkal~eg~k~~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~ 644 (705)
T KOG2307|consen 565 KEVPTTHSSYVVTALRPVKALKEGLKCELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGS 644 (705)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 77778899999998877765433332223222233333333333333 333445555433221
Q ss_pred -------------hHhhHHhhHHHHHHHHhhCCC
Q 020144 153 -------------GAQQMLLDTQAVKTILLDIPS 173 (330)
Q Consensus 153 -------------gaeQLLLD~~sLK~~Ll~LP~ 173 (330)
..+||.+|++..-..+-+|--
T Consensus 645 s~gss~~vSddDKir~QL~lDv~~~~s~~~kL~f 678 (705)
T KOG2307|consen 645 SGGSSQTVSDDDKIRQQLYLDVKYFLSYAEKLVF 678 (705)
T ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHHHHHhcc
Confidence 468999999988877766654
No 18
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.77 E-value=19 Score=39.86 Aligned_cols=159 Identities=14% Similarity=0.199 Sum_probs=85.6
Q ss_pred chhhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCcccc-hhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCC
Q 020144 11 DERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMS-EVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWG 89 (330)
Q Consensus 11 ~~~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~Idf~-~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~ 89 (330)
+-+++|.+=|=+.+|...-..|-+..+-.-.-+.+.--+++ .-...+..+..+=|.....-|-..++|.+- +...+|.
T Consensus 718 ~qrlLi~LsN~~yc~~~~~~~l~n~fk~~~~~~~k~iE~is~s~s~l~s~l~e~Yi~~k~~~i~~alEp~~~-~~~~~W~ 796 (934)
T KOG2347|consen 718 EQRLLIVLSNIGYCKDILAPTLLNIFKYTWLLSRKNIEDISMSLSGLGSKLFENYIEDKADPIRGALEPYLL-DGGIQWG 796 (934)
T ss_pred hheeEEEeccHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhh-ccccccc
Confidence 34456656565545555556676666333322222211222 112222222222222222233333333321 4668999
Q ss_pred CCCcCCCcCccHHHHHHHHhh-hHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc--cCCChhhHhhHHhhHHHHHH
Q 020144 90 SLESVGDQSEYVNGINMILTS-SIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC--KHISETGAQQMLLDTQAVKT 166 (330)
Q Consensus 90 ~~e~VgD~S~YV~~i~~~L~~-~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~--kpis~~gaeQLLLD~~sLK~ 166 (330)
..-.+++-++|...+...|-- +..++. +.+......+.++++.+.-.|. .+++| ..++..|+=|+.+|+..+.+
T Consensus 797 ~~~~~~~irdYa~E~l~~lV~VhaEvf~--iap~Ll~kiL~~~ve~i~d~L~-~l~~~~v~s~S~nG~lQi~vdl~~l~~ 873 (934)
T KOG2347|consen 797 MAPPVKGIRDYAKEALHNLVAVHAEVFA--IAPQLLDKILGETVEGISDELL-RLFSCDVQSFSANGALQIMVDLEYLED 873 (934)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHH-HHhhhhhhccCCCcceeeeeeHHHHHH
Confidence 888899999998887665532 222221 2344444444444444333333 33444 77888999999999999999
Q ss_pred HHhhCCC
Q 020144 167 ILLDIPS 173 (330)
Q Consensus 167 ~Ll~LP~ 173 (330)
.|.-+-.
T Consensus 874 ~l~~Ylt 880 (934)
T KOG2347|consen 874 VLGPYLT 880 (934)
T ss_pred HHHHhcc
Confidence 9866554
No 19
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.74 E-value=81 Score=34.65 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhhhchHHhhcccCCCCCCCCcC---CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHH
Q 020144 62 TKALVTLVLGLETKFDNEMAGMTRVPWGSLESV---GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPR 138 (330)
Q Consensus 62 sk~I~~LV~~le~~le~a~~~m~~~nW~~~e~V---gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~ 138 (330)
.++|+.|+. .++..+..-.+.+-..-++. ...+.-...+++.+..++..+...+....+..|.-++...+..-
T Consensus 589 ~~tIn~li~----~~~~il~~~qkk~df~p~s~~s~~~~~~pa~~vVq~L~~~~~~l~~~~dg~nLd~~~~eig~rlf~~ 664 (763)
T KOG3745|consen 589 DRTINVLIG----HVKFILSTEQKKTDFKPDSINSLTRDIEPAIRVVQFLGNHIEQLKGRLDGENLDVFLQEIGTRLFRL 664 (763)
T ss_pred HHHHHHHHH----HHHHHhcccccccccCCcccCcchhhhHHHHHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHHHH
Confidence 344444444 34455553344333322222 23344477788888889999988888888888888999888888
Q ss_pred HHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCchhHHHHHH-hhC
Q 020144 139 FYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYR-ALL 217 (330)
Q Consensus 139 f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~e~~v~~Y~-~L~ 217 (330)
.+..+.+|+ ++..||=-++-|+-...+++.+|-. ..|...|.-|..+.-+++.-++..-+.-. .+.
T Consensus 665 l~~hl~~~~-~s~~Gal~licDvn~y~~~i~~~~~------------~~vl~~F~tL~~L~nLliV~pd~l~ev~k~~~l 731 (763)
T KOG3745|consen 665 LLSHLQQFK-VSTAGALLLICDVNEYRTFIHSLGQ------------PSVLPYFKTLKALANLLIVKPDNLEEVGKGKFL 731 (763)
T ss_pred HHHHHHHhe-eccccceeeeccHHHHHHHHHHhCc------------ccHHHHHHHHHHHHHHHeeChhhHHHHhchhhh
Confidence 889998876 8999999999999999999998764 56777888899999999887654443322 122
Q ss_pred CCCCHHHHHHHHhhc
Q 020144 218 PEGTPMEFQRILELK 232 (330)
Q Consensus 218 ~d~S~~~FqkIL~LK 232 (330)
++-+..+..-++.++
T Consensus 732 a~f~~~~I~efv~lR 746 (763)
T KOG3745|consen 732 ANFDREEIHEFVQLR 746 (763)
T ss_pred ccccHHHHHHHHHHh
Confidence 222334445555555
No 20
>PF10548 P22_AR_C: P22AR C-terminal domain; InterPro: IPR018876 This entry represents the carboxy-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018875 from INTERPRO.
Probab=70.05 E-value=15 Score=28.61 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=48.8
Q ss_pred ccCCccchhhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHH
Q 020144 5 IRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVL 70 (330)
Q Consensus 5 ~~~s~e~~~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~ 70 (330)
.-+|++|+..+|-+-.-++.|.++++.|+.-|+.. .++|..++ =+.--.|...++++-..|.+
T Consensus 6 ~~fTe~El~~L~Wlw~~~~~m~~~~~~l~p~L~~l-gS~~a~~~--ys~a~Ey~~~~~~~r~iL~R 68 (74)
T PF10548_consen 6 FQFTEEELQSLVWLWFAAERMRELCQELYPALKAL-GSNYAGKV--YSIAYEYRRTLERARKILKR 68 (74)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcCccc--cchHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999998764 66677774 33445566666666555544
No 21
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=64.95 E-value=90 Score=26.75 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=62.2
Q ss_pred HHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHh---------------------------HhccCCChhh
Q 020144 101 VNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANI---------------------------FKCKHISETG 153 (330)
Q Consensus 101 V~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I---------------------------~k~kpis~~g 153 (330)
+.-+...|..+..++...+.+..|.....++-..++..+-..+ ..-||+++.-
T Consensus 4 i~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~llvlP~ls~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~q 83 (137)
T PF10540_consen 4 IEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELLVLPPLSDKPMLGLLQSAVSSLSSHGIGGSQRPLTPKQ 83 (137)
T ss_dssp HHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHTTS-G------------GG-TTS-------------TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHhhcccccCCCCCHHH
Confidence 3445667777888888888777788888888887777777777 3447777777
Q ss_pred HhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHH--HHhHHHHHHHhhHhcCCchhHHHHH
Q 020144 154 AQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFV--SREMSKAEALLKVILSPVDSVADTY 213 (330)
Q Consensus 154 aeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V--~~~~~klE~lLKvL~sP~e~~v~~Y 213 (330)
.+-+-.-.+.|+.+|+. +++.. | ...+ +.+++.++.++..=..+.|.+++.|
T Consensus 84 ~~~l~~~L~~L~~FFhA----~G~Gl-~---~~~L~ks~~yq~L~~~l~ly~~sT~~LI~~f 137 (137)
T PF10540_consen 84 CDRLFKWLDTLKDFFHA----EGNGL-P---LEFLEKSPEYQSLRYILSLYDQSTDELIEEF 137 (137)
T ss_dssp HHHHHHHHHHHHHHHHC----CCTS------HHHHHC-HHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHhC----CCCCC-C---HHHHccCHHHHHHHHHHHHhcCCHHHHHhhC
Confidence 78888888899999976 22222 2 3555 6778888888888888877777765
No 22
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=62.87 E-value=85 Score=29.44 Aligned_cols=87 Identities=25% Similarity=0.324 Sum_probs=53.3
Q ss_pred HHHHhhhHHHHhhhc---cHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCC-CCCCC
Q 020144 105 NMILTSSIPVLGSLL---SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLG-RQTSN 180 (330)
Q Consensus 105 ~~~L~~~~~~i~~~L---~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~-~~~~~ 180 (330)
...++..-|.+..+| ....+..|+...++ .++.+...+|+|- |.+ ++|...+-..+....=-. .-.+.
T Consensus 18 a~~l~~~~p~l~~lLp~~~~~~l~~Fy~~tv~-~v~dLr~~iy~~~------a~~-~l~~~~i~~~Ia~vKWdvkev~~q 89 (234)
T PF10474_consen 18 ARQLESLRPYLESLLPPNKRDFLEQFYSQTVS-AVPDLREPIYKCV------ASR-LLDLEQILNSIANVKWDVKEVMSQ 89 (234)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHH-HHHHHHHHHHHHH------HHH-HcCHHHHHHHHHHcCCCCCCCCCc
Confidence 333444455555555 34567778887774 4788888888862 233 356665555554443111 12345
Q ss_pred chhhHHHHHHhHHHHHHHh
Q 020144 181 AASYTKFVSREMSKAEALL 199 (330)
Q Consensus 181 ~~sY~k~V~~~~~klE~lL 199 (330)
+++|...+.++|+....-|
T Consensus 90 hs~YVd~l~~~~~~f~~rL 108 (234)
T PF10474_consen 90 HSSYVDQLVQEFQQFSERL 108 (234)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 6789999999999876666
No 23
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.38 E-value=20 Score=37.60 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHh
Q 020144 123 YFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVI 202 (330)
Q Consensus 123 Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL 202 (330)
+..-+.-|+++..+.-|++.|..++.|+.-||+||-+|++-|.+.|..|--.- |- .+-.++..|
T Consensus 748 fatewmfkVaEga~aLYmdQi~gIk~i~dr~AqQLSVDIEYLSNVLeaL~lpI-----~~-----------~Laqf~TcL 811 (828)
T KOG4182|consen 748 FATEWMFKVAEGACALYMDQILGIKSIPDRAAQQLSVDIEYLSNVLEALGLPI-----NL-----------QLAQFLTCL 811 (828)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccCchhhhhhhhhHHHHHHHHHHhCCCC-----Ch-----------HHHHHHHHH
Confidence 34455669999999999999999999999999999999999999987764311 10 234566777
Q ss_pred cCCchhH
Q 020144 203 LSPVDSV 209 (330)
Q Consensus 203 ~sP~e~~ 209 (330)
.+|++.+
T Consensus 812 aa~~~el 818 (828)
T KOG4182|consen 812 AAAPDEL 818 (828)
T ss_pred hcCcHHH
Confidence 7777543
No 24
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.21 E-value=1.1e+02 Score=33.39 Aligned_cols=159 Identities=14% Similarity=0.059 Sum_probs=92.0
Q ss_pred chhhhhhhcccHHHHHHHHHHHHH-HHHHhhhhhccCCcccchhh---------hHHHHHHH-H--------HHHHHHHH
Q 020144 11 DERVICYIVNSAEYCHKTSGDLAE-SVSKIIDSQLADGVDMSEVQ---------DEFSAVIT-K--------ALVTLVLG 71 (330)
Q Consensus 11 ~~~~ic~IINTADYC~~Ti~qLee-kl~e~id~~~ke~Idf~~e~---------D~F~~vis-k--------~I~~LV~~ 71 (330)
+.+++-.|.|-+.||.....+=.| .++.--|+..--.++++... -.|++-++ . ++..|-..
T Consensus 481 d~rlTlavs~~~ak~i~~l~~kae~qistg~D~rQvigp~ts~q~rnv~l~n~l~kyhdsvr~~aI~~s~e~avlpl~t~ 560 (797)
T KOG2211|consen 481 DVRLTLAVSQIAAKVIDSLILKAELQISTGSDERQVIGPDTSRQLRNVRLMNWLSKYHDSVRLLAIFGSDEDAVLPLETV 560 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCCchHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhHHHHH
Confidence 445667788888888766543333 33322233222222333332 23444444 2 22222223
Q ss_pred HhhhchHHhhcccCCCCC----C--CCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHH------HHHHHHHHHHH
Q 020144 72 LETKFDNEMAGMTRVPWG----S--LESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFL------DKLASSLGPRF 139 (330)
Q Consensus 72 le~~le~a~~~m~~~nW~----~--~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fc------DKlv~~fi~~f 139 (330)
+-..++..+..|...+.. + ......-|-||..+...+......+-..+.+.-+..=| .-++..++.-|
T Consensus 561 ~~dilesiI~tis~~~ls~~~lss~~~pd~~~s~YmeelQ~fVlrf~s~~~s~f~~s~~~~~~~~~~~t~~~akr~veff 640 (797)
T KOG2211|consen 561 KKDILESIIVTISPSELSLPNLSSKWTPDEYVSWYMEELQLFVLRFLSGLVSSFNSSVISRGQQHYVDTYPRAKRIVEFF 640 (797)
T ss_pred HHHHHHHHHhhcCHhhcCCcccccccCCCcchhHHHHHHHHHHHHHHHHHHHhccHHHhhcccccchhhHHHHHHHHHHh
Confidence 344455555555443333 1 11233457788887776666555555444333333223 56788889999
Q ss_pred HHHhHhccCCChhhHhhHHhhHHHHHHHHh
Q 020144 140 YANIFKCKHISETGAQQMLLDTQAVKTILL 169 (330)
Q Consensus 140 ~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll 169 (330)
+.++-..+|+++.|-.+|--|+..+...+.
T Consensus 641 irhasl~rplse~gkmRlaqD~aemElaVg 670 (797)
T KOG2211|consen 641 IRHASLERPLSELGKMRLAQDIAEMELAVG 670 (797)
T ss_pred hhhhhhcCchhhhhhhhHHHHhHHHHHhhC
Confidence 999999999999999999999999887764
No 25
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=53.81 E-value=14 Score=38.03 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=18.2
Q ss_pred ccchHHHHHHHHHhcCC-CCchhhHHH
Q 020144 284 ITSREDVLTRAAALGRG-AATTGFKRF 309 (330)
Q Consensus 284 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 309 (330)
-++.-.|-+--+.|..| .+|-|+||.
T Consensus 258 ~~~k~~~~AlFaqlNqGe~iTsgLkkV 284 (480)
T KOG2675|consen 258 DANKGGRGALFAQLNQGEGITSGLKKV 284 (480)
T ss_pred ccccccHHHHHHHHhccchhhhhhhhC
Confidence 34444677778888889 777777763
No 26
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.94 E-value=38 Score=37.24 Aligned_cols=149 Identities=9% Similarity=0.088 Sum_probs=85.8
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCc-ccch--hhhHHHHHHHHHHHHHHHHHhhhchHH--------hhcc
Q 020144 15 ICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV-DMSE--VQDEFSAVITKALVTLVLGLETKFDNE--------MAGM 83 (330)
Q Consensus 15 ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~I-df~~--e~D~F~~visk~I~~LV~~le~~le~a--------~~~m 83 (330)
.-+|-|..++|+.++.++-.-+.++++..+.+++ +.++ ..+...+++..+++.+++++-.+.... +|-|
T Consensus 526 mElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~ 605 (859)
T KOG1241|consen 526 MELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIF 605 (859)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHH
Confidence 4578999999999999999888888887766544 3332 234556778888999988776654432 2333
Q ss_pred cCCCCC--CCCcCCCcCccHHHHHHHHhhhHHHHhhhccH---HHHHHHHHHHHHHHHHHHHHHh-HhccCCChhhHhhH
Q 020144 84 TRVPWG--SLESVGDQSEYVNGINMILTSSIPVLGSLLSP---IYFQFFLDKLASSLGPRFYANI-FKCKHISETGAQQM 157 (330)
Q Consensus 84 ~~~nW~--~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~---~Y~~~fcDKlv~~fi~~f~~~I-~k~kpis~~gaeQL 157 (330)
....=+ +-|.-+--|.-+..+-.-+.+|++.+.++|.. ++-.++.=-.+--++...-+++ -+..|..+.-..+|
T Consensus 606 ~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~L 685 (859)
T KOG1241|consen 606 ESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVL 685 (859)
T ss_pred cCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 331100 00111123344455555666788888887732 2233332223333344444444 23456666666666
Q ss_pred HhhHHH
Q 020144 158 LLDTQA 163 (330)
Q Consensus 158 LLD~~s 163 (330)
+.|+++
T Consensus 686 vq~Lss 691 (859)
T KOG1241|consen 686 VQCLSS 691 (859)
T ss_pred HHHccC
Confidence 655543
No 27
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=47.32 E-value=60 Score=26.20 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=38.9
Q ss_pred HHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhH
Q 020144 105 NMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDT 161 (330)
Q Consensus 105 ~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~ 161 (330)
++.|.-+.+.|+.+|+|.|.-.| ++..|-..-++.|..=+.-++..|-|++||.
T Consensus 5 k~nL~af~~yi~ktl~P~yIl~~---m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~ 58 (89)
T cd08816 5 KRNLQRFRDYIKKILRPSYILGF---MTTWLEDEEVERILSEEEKGVTSAAQLFLDY 58 (89)
T ss_pred HHHHHHHHHHHHHhhchHHHHHH---HHHhcCHHHHHHHHHHhccChHHHHHHHHHH
Confidence 55677778888889999887665 3445555556677666666777888888874
No 28
>PF10909 DUF2682: Protein of unknown function (DUF2682); InterPro: IPR024322 The function of these viral proteins is not known.
Probab=45.25 E-value=47 Score=26.18 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhhccCCcccchhhhHHHH---HHHHHHHHHHHHH
Q 020144 30 GDLAESVSKIIDSQLADGVDMSEVQDEFSA---VITKALVTLVLGL 72 (330)
Q Consensus 30 ~qLeekl~e~id~~~ke~Idf~~e~D~F~~---visk~I~~LV~~l 72 (330)
.+||+++-+++-.. ..|.|++++..+.- -++.||+.+++.+
T Consensus 28 ~~lE~~Ltkll~~~--naI~Fd~~~~~l~~Lk~Ni~nCiNi~IdLI 71 (77)
T PF10909_consen 28 DDLEERLTKLLIRA--NAIVFDPEQSNLKFLKNNISNCINILIDLI 71 (77)
T ss_pred hhHHHHHHHHHHHh--cceeeCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 48999999998775 78889987776644 4667888887754
No 29
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=43.43 E-value=2.1e+02 Score=24.87 Aligned_cols=69 Identities=25% Similarity=0.346 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCCcCccHHHHHHHHhhhHHHHhhhccHH-HHHHHHHHHHHHHHHHH
Q 020144 61 ITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPI-YFQFFLDKLASSLGPRF 139 (330)
Q Consensus 61 isk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~-Y~~~fcDKlv~~fi~~f 139 (330)
+...++.|++.+..+ +-..|+. .+.+...++..+...|...+..+...++.. ....++++++..+..++
T Consensus 4 vd~~l~~li~~I~rd--------fV~sWY~--~Is~d~~F~~ei~~~l~~~~~~l~~R~~~vD~~~ll~~~l~~~l~~Hl 73 (185)
T PF02194_consen 4 VDEALHELIDLILRD--------FVNSWYS--KISPDPEFPNEIRRILRHALRELSQRLSRVDLVKLLLDDLLPILTKHL 73 (185)
T ss_pred HHHHHHHHHHHHHHH--------HHHhhhh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 445556666655544 2234883 455544899999999999999988877543 33344777766665444
No 30
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=41.99 E-value=81 Score=34.52 Aligned_cols=73 Identities=25% Similarity=0.350 Sum_probs=61.5
Q ss_pred CcCccHHHHHHHHhhhHHHHhh-hccHHHHHHHHHHHHHHHHHHHHHHh-HhccCCChhhHhhHHhhHHHHHHHH
Q 020144 96 DQSEYVNGINMILTSSIPVLGS-LLSPIYFQFFLDKLASSLGPRFYANI-FKCKHISETGAQQMLLDTQAVKTIL 168 (330)
Q Consensus 96 D~S~YV~~i~~~L~~~~~~i~~-~L~~~Y~~~fcDKlv~~fi~~f~~~I-~k~kpis~~gaeQLLLD~~sLK~~L 168 (330)
-.|-||.+...-+.+.+..+.. .|+++-++-|...++..++..|-+-. -+|-++++-+|=||++|+.=+...|
T Consensus 642 qPslyiqSfL~rl~qeInrvggh~Lp~~vLQ~f~~sl~~k~~~~YE~l~~a~~~kasqn~aLQll~DLrfl~~Vl 716 (863)
T KOG2033|consen 642 QPSLYIQSFLQRLHQEINRVGGHTLPPKVLQAFIQSLIGKLLCHYEGLAHAECTKASQNIALQLLFDLRFLERVL 716 (863)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3567999998888888888776 55999999999999999999887766 6675688999999999998887776
No 31
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.95 E-value=4.2e+02 Score=27.90 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCCcCccHHHHHHHHhhhHHHHhhhccH----------HHHHH--HHHHHHHHH--HHHHHHHhHhccCCCh
Q 020144 94 VGDQSEYVNGINMILTSSIPVLGSLLSP----------IYFQF--FLDKLASSL--GPRFYANIFKCKHISE 151 (330)
Q Consensus 94 VgD~S~YV~~i~~~L~~~~~~i~~~L~~----------~Y~~~--fcDKlv~~f--i~~f~~~I~k~kpis~ 151 (330)
-.|.|.+|+.-..-|.+++..++.+-.+ ...+. --+++...+ +..+++.+.+|+|+..
T Consensus 120 ~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~ 191 (491)
T KOG0251|consen 120 TWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRGKEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGS 191 (491)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhccccccccCcccccccccccchHHHHHHHHHHHHHHHHHHcCCCCch
Confidence 4578889999888888877777653310 00011 146666666 8899999999999985
No 32
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=39.26 E-value=3.2e+02 Score=25.42 Aligned_cols=48 Identities=6% Similarity=0.053 Sum_probs=32.5
Q ss_pred ccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 020144 99 EYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC 146 (330)
Q Consensus 99 ~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~ 146 (330)
.++..+...|++..++=-..+...-+.+|--+-.+.....++++|..+
T Consensus 13 ~~l~~v~~~iK~~~pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m 60 (205)
T PF12238_consen 13 KALKKVLDLIKENPPFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLM 60 (205)
T ss_pred HHHHHHHHHHccCCCCchhhhhHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 466666777777666666666666777777777777777777776543
No 33
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=33.68 E-value=46 Score=32.37 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=52.6
Q ss_pred ccCCcccchhhhHHHHHHHHHHHHHHHH--HhhhchHHhhcccC-CC-CCCCCcCCCcCccHHHHHHHHhhhHHHH
Q 020144 44 LADGVDMSEVQDEFSAVITKALVTLVLG--LETKFDNEMAGMTR-VP-WGSLESVGDQSEYVNGINMILTSSIPVL 115 (330)
Q Consensus 44 ~ke~Idf~~e~D~F~~visk~I~~LV~~--le~~le~a~~~m~~-~n-W~~~e~VgD~S~YV~~i~~~L~~~~~~i 115 (330)
|.++.|.++|.+-+...+...-..|-.+ +-.+||+-.++|.+ .| -++=..--+-|.+|..|+..|.+.-..+
T Consensus 212 ~adK~DI~EEl~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEmnRE~NTigSKs~d~~is~~vVe~K~eiEkiREQV 287 (291)
T TIGR00255 212 LAQRIDIAEEIDRLDSHVKEFYNILKKGEAVGRKLDFMMQELNRESNTLASKAIDADITNLAVEMKVLIEKIKEQI 287 (291)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998888774 78999999999988 22 2221112235677777777776544443
No 34
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=33.07 E-value=7.5e+02 Score=27.81 Aligned_cols=190 Identities=13% Similarity=0.192 Sum_probs=91.5
Q ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHHh---hhhh--ccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHh-hcccC
Q 020144 12 ERVICYIVNSAEYCHKTSGDLAESVSKI---IDSQ--LADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEM-AGMTR 85 (330)
Q Consensus 12 ~~~ic~IINTADYC~~Ti~qLeekl~e~---id~~--~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~-~~m~~ 85 (330)
....|..||..||...+.++-+...-.- ..+. +++. .++-.+.-.+-+-+-+..++..+.....+.+ +.|+.
T Consensus 722 s~~lCv~iNNvE~VRrsl~~~~k~~~~p~~~~~~~~~l~~~--~~n~les~~~~~~~e~~ri~~~Lt~~m~~~~~K~vfH 799 (1103)
T KOG1328|consen 722 SHLLCVAINNVEQVRRSLNITEKLHMDPRSRLNGNHMLKSE--IENRLESCESNICSEIDRIVGLLTERMLPQMKKHVFH 799 (1103)
T ss_pred HHHHHHHHccHHHHHHHHhHHhhhccCcccccCccccCchH--HHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHh
Confidence 3568999999999999987654322111 0000 1111 2222233333344444566666666666666 67889
Q ss_pred CCCCCCCcCCCcCccHHHHHHHHhhhHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHhHhc----cCCChhhHhhHHhh
Q 020144 86 VPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSP-IYFQFFLDKLASSLGPRFYANIFKC----KHISETGAQQMLLD 160 (330)
Q Consensus 86 ~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~-~Y~~~fcDKlv~~fi~~f~~~I~k~----kpis~~gaeQLLLD 160 (330)
..|+.- + --+.+-..-|.+|...=...|+. -.-+||. ++.+......+..+..| .-.+..-=.+|---
T Consensus 800 lawSPd-s-----~~~~~a~~PL~~yLD~~La~ln~~Ll~~Nf~-Rvl~a~w~~vl~~l~~~~g~n~d~~~~Fy~Rl~ea 872 (1103)
T KOG1328|consen 800 LAWSPD-S-----QLVEDALKPLTDYLDIELASLNKNLLHRNFL-RVLSAQWSIVLKLLRECVGENVDMEPAFYHRLFEA 872 (1103)
T ss_pred eecCcc-c-----cchhhhHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Confidence 999852 2 24444444555555554444432 2233333 22233333333333333 22222222233333
Q ss_pred HHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCchhHHHH-HHhhC
Q 020144 161 TQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADT-YRALL 217 (330)
Q Consensus 161 ~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~e~~v~~-Y~~L~ 217 (330)
.+.|-.+|+- +++.-+ -.-.=+..+-+|+.+|.+=.+|.|.+++. |..++
T Consensus 873 l~~Lv~FFHA----eGqGL~---le~L~t~~~~rl~~~L~lhkt~T~~lIe~fY~d~L 923 (1103)
T KOG1328|consen 873 LHVLVEFFHA----EGQGLS---LEALDTNPEHRLVKILSLHKTPTEQLIEKFYKDLL 923 (1103)
T ss_pred HHHHHHHHhc----cCCCcc---hHhhccCcHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3334444432 111110 01112233455777788888898887777 44443
No 35
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=32.05 E-value=1.4e+02 Score=31.62 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHHHHHHHhhcCCCH-------HHHHHHHHHHHhcCC
Q 020144 222 PMEFQRILELKGLKK-------ADQQTILDDFNKHGP 251 (330)
Q Consensus 222 ~~~FqkIL~LKGl~k-------~eq~~lle~f~~~~~ 251 (330)
..+|..|+.=|+-.. .++..-|+.|+.--+
T Consensus 223 ~tElKeii~nK~YtG~~~~~n~~~Vk~ALq~YqELLP 259 (574)
T PF07462_consen 223 FTELKEIIKNKKYTGNDHAKNIAEVKEALQAYQELLP 259 (574)
T ss_pred HHHHHHHHhcCCCCCCChhhhHHHHHHHHHHHHHhCC
Confidence 456677777664432 468888899986544
No 36
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=31.41 E-value=1.4e+02 Score=23.60 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=34.4
Q ss_pred hHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhc
Q 020144 153 GAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVIL 203 (330)
Q Consensus 153 gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~ 203 (330)
..++|.+|++.|+.+|..-.. .+....++.+..+||.=|+-+.
T Consensus 4 ~i~eL~~Dl~El~~Ll~~a~R--------~rVk~~L~~ei~klE~eI~~~~ 46 (79)
T PF09032_consen 4 QIEELQLDLEELKSLLEQAKR--------KRVKDLLTNEIRKLETEIKKLK 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--------CCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999976554 2456788999999998887664
No 37
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=31.21 E-value=3.6e+02 Score=28.65 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=52.0
Q ss_pred cccCCccchhhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCcccch----hhhHHHHHHHHHHHHHHHHHhh
Q 020144 4 QIRISERDERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSE----VQDEFSAVITKALVTLVLGLET 74 (330)
Q Consensus 4 ~~~~s~e~~~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~Idf~~----e~D~F~~visk~I~~LV~~le~ 74 (330)
+-.+|++|-+..-.+|-+|+=.+..-+-+|+ +.+.++..++.++.|++ |.+.+++++-.+++...+.+.+
T Consensus 391 ~~~Lse~es~r~~~iid~a~~lE~IgDiie~-l~~~~~kk~~~~~~fse~~~~el~~l~~~~~~n~~~a~~~l~~ 464 (533)
T COG1283 391 KEGLSEEESRRWAEIIDAAINLEHIGDIIER-LLELADKKIANGRAFSEDGLEELDALFALTLENLRLAISVLVT 464 (533)
T ss_pred cccCCHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457888989888888877766655555555 88888888888888875 4677788888888777776543
No 38
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=30.11 E-value=5.5e+02 Score=25.38 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=85.2
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHhhhhh----ccCCcccchh-hhHHHHHHHHHHHHHHHHH-hhhchHHhhcccCCCC
Q 020144 15 ICYIVNSAEYCHKTSGDLAESVSKIIDSQ----LADGVDMSEV-QDEFSAVITKALVTLVLGL-ETKFDNEMAGMTRVPW 88 (330)
Q Consensus 15 ic~IINTADYC~~Ti~qLeekl~e~id~~----~ke~Idf~~e-~D~F~~visk~I~~LV~~l-e~~le~a~~~m~~~nW 88 (330)
+--.||.||+|..- =-.++++.|.-. =+...-|+++ ...|.+.|..=++.+...- -......+..|.+.+|
T Consensus 124 LLNlin~Cd~F~~~---d~~~v~eVI~~RN~~MHS~emkvs~~wm~~~~~~i~nll~~f~~ipe~~~a~~~Ie~ll~~d~ 200 (307)
T PF15112_consen 124 LLNLINSCDHFKKY---DRKKVREVIKCRNEIMHSSEMKVSSQWMRDFQMKIQNLLNEFRNIPEIVAAGSRIEQLLTSDW 200 (307)
T ss_pred HHHHHHHhhccccc---cHHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhhhh
Confidence 44578999999884 123344444311 0122334433 5677775555544332221 1223445677888999
Q ss_pred CCCCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHH
Q 020144 89 GSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTIL 168 (330)
Q Consensus 89 ~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~L 168 (330)
.....-.|+..++.....++.+.-.+.. .-...+=|++.+ .+.++. =.++..|+.+-++.+++.+|
T Consensus 201 ~v~~~~~d~~Dg~~~~~~~~~~~~~i~e-----~e~e~Lke~lqe-----l~~~~e----~~~~~~ee~~~~l~~~~~fL 266 (307)
T PF15112_consen 201 AVHIPEEDQRDGCESETDVYLSESQILE-----IEMELLKEKLQE-----LYLQAE----EQEVLPEEDSKRLEVLKEFL 266 (307)
T ss_pred hhcCchhhccchhhhccchhhhHHHHHH-----HHHHHHHHHHHH-----HHHHHh----hccccchhhhHHHHHHHHHH
Confidence 9887777888887776665444333221 111111122221 111221 12222377777788888887
Q ss_pred hhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCC
Q 020144 169 LDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSP 205 (330)
Q Consensus 169 l~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP 205 (330)
..=.. -......++++|+.+..=+..+
T Consensus 267 ~~NkD----------L~~~l~~e~qkL~~l~~k~~~~ 293 (307)
T PF15112_consen 267 RNNKD----------LRSNLQEELQKLDSLQTKHQKL 293 (307)
T ss_pred HhcHH----------HHHHHHHHHHHHHHHHHHhcch
Confidence 54322 2345556666776665555444
No 39
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=29.69 E-value=4.2e+02 Score=25.10 Aligned_cols=134 Identities=12% Similarity=0.146 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHH-------
Q 020144 54 QDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQF------- 126 (330)
Q Consensus 54 ~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~------- 126 (330)
.....+.|.+++-.|...|...++-+-.++.+..+...++.+++..|+ .+.+..+...+...++..|...
T Consensus 67 ~~~L~~~I~~~LP~l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l---~~~~~~f~~~~~~~i~G~~~~~~~~~~l~ 143 (295)
T PF01031_consen 67 SELLVEHIRKSLPSLKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYL---LQIISKFSRIFKDAIDGEYSDEFSTNELR 143 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHH---HHHHHHHHHHHHHHHTT-------TTS--
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHhcCCccccccccccc
Confidence 355677888888888888888888777777776665433334444444 4455555555666665444431
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCC-CCCCchhhHHHHHHhHHHHHH
Q 020144 127 FLDKLASSLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGR-QTSNAASYTKFVSREMSKAEA 197 (330)
Q Consensus 127 fcDKlv~~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~-~~~~~~sY~k~V~~~~~klE~ 197 (330)
...++...|-..|-..+-+..|.... +...+++...+.-.... .-.+..+|...|.+.+++++.
T Consensus 144 ~~ari~~~f~~~~~~~~~~~~~~~~~-------~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~ 208 (295)
T PF01031_consen 144 GGARIRYIFNEWFDKFLEKIDPFEDL-------SDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEE 208 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHH-------HHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHH
T ss_pred hhhHHHHHHHhhhhhhhhhhccccch-------hHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHh
Confidence 22333333333333333343442222 34446666655322111 123456688888888876654
No 40
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=26.71 E-value=4.9e+02 Score=25.42 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=60.1
Q ss_pred hcccHHHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHH-------HHHHHhhhchHHhhcccCCCCCC
Q 020144 18 IVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVT-------LVLGLETKFDNEMAGMTRVPWGS 90 (330)
Q Consensus 18 IINTADYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F~~visk~I~~-------LV~~le~~le~a~~~m~~~nW~~ 90 (330)
-|++++|..+.+. |.+.+.+.-... ....|+++.=.|.+++++--.. -+..+-..+--.++.-..++|..
T Consensus 214 ~i~~~e~~~eLi~-la~el~~~~~r~--~~~gLseeE~AFyd~L~~~~~~~~~~~~e~l~~la~el~~~lk~~~~vDW~~ 290 (335)
T PF11867_consen 214 SISSEEVIEELIK-LAKELREEEERA--EELGLSEEELAFYDALAKNESAVEEMGDEELKELAKELTETLKENVTVDWTK 290 (335)
T ss_pred cchHHHHHHHHHH-HHHHHHHHHhcc--cccCCCHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHhccccCcCcee
Confidence 3567888877665 455555443333 4456888888999999763211 23445666666677777789987
Q ss_pred CCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHH
Q 020144 91 LESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASS 134 (330)
Q Consensus 91 ~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~ 134 (330)
-+++ -..|+..++..+.. .-.++......++.++++
T Consensus 291 ke~~------ra~~r~~Ik~~L~k--~~ypp~~~~~~~~~v~~q 326 (335)
T PF11867_consen 291 KEDV------RAKMRRAIKRLLRK--YGYPPDKQEEAVDEVMEQ 326 (335)
T ss_pred CccH------HHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHH
Confidence 6542 23333333222111 123455566666666543
No 41
>PLN03162 golden-2 like transcription factor; Provisional
Probab=26.51 E-value=3.3e+02 Score=27.86 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=33.0
Q ss_pred hhHHHHHHhhCCC-CCHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 020144 207 DSVADTYRALLPE-GTPMEFQRILELKGLKKADQQTILDDFN 247 (330)
Q Consensus 207 e~~v~~Y~~L~~d-~S~~~FqkIL~LKGl~k~eq~~lle~f~ 247 (330)
+.|++....|=.+ .++.-.-++|+.+||.+..+...|+.||
T Consensus 246 ~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYR 287 (526)
T PLN03162 246 RRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYR 287 (526)
T ss_pred HHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 5677777777545 4566777888889999999999999998
No 42
>smart00313 PXA Domain associated with PX domains. unpubl. observations
Probab=25.99 E-value=2e+02 Score=25.37 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCCcCccHHHHHHHHhhhHHHHhhhccH-HHHHHHHHHHHHHHHHHH
Q 020144 61 ITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSP-IYFQFFLDKLASSLGPRF 139 (330)
Q Consensus 61 isk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~-~Y~~~fcDKlv~~fi~~f 139 (330)
++..++.+++.+-.+ +- ..|+. .+.+...++..+...|...+..+...+++ .....++..++..++..|
T Consensus 4 i~~~L~~li~~Iird-------fV-~sWY~--~is~d~~F~~~i~~~l~~~~~~l~~Rl~~vD~~~ll~~~i~~~~~~~~ 73 (176)
T smart00313 4 LEEPLQLLISKIIRD-------YV-QGWYK--GVSEDPSFLREIEQTLEYILRQLYRRLSRQDSAHLILYEILKNLISTI 73 (176)
T ss_pred hHHHHHHHHHHHHHH-------HH-HHHhc--cCCCChhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 445556666655544 22 25775 25555579999999999999999998853 444455566666666666
Q ss_pred HH
Q 020144 140 YA 141 (330)
Q Consensus 140 ~~ 141 (330)
.+
T Consensus 74 ~~ 75 (176)
T smart00313 74 TN 75 (176)
T ss_pred HH
Confidence 53
No 43
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=25.10 E-value=1.9e+02 Score=24.79 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=36.0
Q ss_pred hcccH-HHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHh
Q 020144 18 IVNSA-EYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEM 80 (330)
Q Consensus 18 IINTA-DYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~ 80 (330)
|||+. ||+...++.+|..+.+...... +.-+..+.. .-|.+|+..|-..++..++..+
T Consensus 17 IiNavnd~l~~~~~~~E~~l~~~~~~~~-~~~~~~~~~----~ei~~G~~kletlle~~~Dk~f 75 (144)
T PF05859_consen 17 IINAVNDILYDAFDAVEEYLLERLPSKL-GSEDYPERS----EEIEKGTHKLETLLESRVDKNF 75 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccc-CcccchhhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 66664 8999999999999999876521 121222111 5566666666655555555443
No 44
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.91 E-value=1.5e+02 Score=25.37 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=25.7
Q ss_pred hhHHHHHHhhCCC-----CCHHHHHHHHhhcCCCHHHHHHHHHHHHhcC
Q 020144 207 DSVADTYRALLPE-----GTPMEFQRILELKGLKKADQQTILDDFNKHG 250 (330)
Q Consensus 207 e~~v~~Y~~L~~d-----~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~ 250 (330)
|.++++=..|+.| .+...=...|+=|||...|+.+.++.-....
T Consensus 3 e~li~~A~~FL~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 3 EDLIEQAVKFLQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHhCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 3444444444433 3334446778889999999999998877554
No 45
>PRK11820 hypothetical protein; Provisional
Probab=24.08 E-value=1.1e+02 Score=29.66 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=52.4
Q ss_pred ccCCcccchhhhHHHHHHHHHHHHHHHH--HhhhchHHhhcccC-CC-CCCCCcCCCcCccHHHHHHHHhhhHHHH
Q 020144 44 LADGVDMSEVQDEFSAVITKALVTLVLG--LETKFDNEMAGMTR-VP-WGSLESVGDQSEYVNGINMILTSSIPVL 115 (330)
Q Consensus 44 ~ke~Idf~~e~D~F~~visk~I~~LV~~--le~~le~a~~~m~~-~n-W~~~e~VgD~S~YV~~i~~~L~~~~~~i 115 (330)
|.+++|.++|.+-+...+...-+.|-.+ +-.+||+-.++|.+ .| -++=..--+-|.+|..|+..|.+.-..+
T Consensus 209 ~adK~DI~EEi~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEm~RE~NTigSKs~~~~is~~vVe~K~elEkiREQV 284 (288)
T PRK11820 209 LAQKADIAEELDRLKSHLKEFREILKKGGPVGRKLDFLMQELNREANTLGSKSNDAEITNLVVELKVLIEQMREQV 284 (288)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999998888763 78999999999988 22 2221122245667777777766544433
No 46
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=23.05 E-value=19 Score=29.96 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=14.6
Q ss_pred hhhhhcccHHHHHHHHHHHH
Q 020144 14 VICYIVNSAEYCHKTSGDLA 33 (330)
Q Consensus 14 ~ic~IINTADYC~~Ti~qLe 33 (330)
.+|+|+|+|.+|--|- |.+
T Consensus 22 kv~LIVNvAs~Cg~t~-qy~ 40 (108)
T PF00255_consen 22 KVLLIVNVASKCGYTK-QYK 40 (108)
T ss_dssp SEEEEEEEESSSTTHH-HHH
T ss_pred CEEEEEecccccCCcc-ccH
Confidence 5799999999996555 444
No 47
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=22.27 E-value=4.1e+02 Score=22.99 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=39.3
Q ss_pred HHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCCcCccHHHHHHHHhhhHHHH
Q 020144 36 VSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVL 115 (330)
Q Consensus 36 l~e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i 115 (330)
++++|.+=| ++|+-+ +.|..-+...+..++..+...+. +++|..+ -+..+...+..++..+
T Consensus 16 ~rdfV~sWY-~~Is~d---~~F~~ei~~~l~~~~~~l~~R~~-------~vD~~~l--------l~~~l~~~l~~Hl~~~ 76 (185)
T PF02194_consen 16 LRDFVNSWY-SKISPD---PEFPNEIRRILRHALRELSQRLS-------RVDLVKL--------LLDDLLPILTKHLRDY 76 (185)
T ss_pred HHHHHHhhh-hccCCc---HHHHHHHHHHHHHHHHHHHHHHH-------hcCHHHH--------HHHHHHHHHHHHHHHH
Confidence 445555555 565433 38999888888888888887743 6677653 3455555555555444
Q ss_pred hh
Q 020144 116 GS 117 (330)
Q Consensus 116 ~~ 117 (330)
+.
T Consensus 77 r~ 78 (185)
T PF02194_consen 77 RE 78 (185)
T ss_pred HH
Confidence 43
No 48
>PF07659 DUF1599: Domain of Unknown Function (DUF1599); InterPro: IPR011630 This entry is represented by Clostridium phage phiCTP1, Gp74. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.74 E-value=2.8e+02 Score=20.88 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhh--hhccCCcccchhhhHHHHHHHHHHHHHHH
Q 020144 27 KTSGDLAESVSKIID--SQLADGVDMSEVQDEFSAVITKALVTLVL 70 (330)
Q Consensus 27 ~Ti~qLeekl~e~id--~~~ke~Idf~~e~D~F~~visk~I~~LV~ 70 (330)
+.+.|+..|+...=. ..-...|+ +...|.|.++++-||-.|++
T Consensus 16 S~td~I~~K~~Rik~l~~~~~~~v~-E~i~~~~~diiNYai~~LI~ 60 (61)
T PF07659_consen 16 SLTDQIFIKANRIKSLEDKGEQKVD-EGIDDTYIDIINYAIMALIQ 60 (61)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccC-CCcchHHHHHHHHHHHHHHh
Confidence 456677777655422 22223343 67889999999999988875
No 49
>PHA03373 tegument protein; Provisional
Probab=21.69 E-value=7.1e+02 Score=23.73 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=30.5
Q ss_pred hhHHHHHHhhCCC-CCHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 020144 207 DSVADTYRALLPE-GTPMEFQRILELKGLKKADQQTILDDFNKH 249 (330)
Q Consensus 207 e~~v~~Y~~L~~d-~S~~~FqkIL~LKGl~k~eq~~lle~f~~~ 249 (330)
|.+-.--..|--| .+-.+.+||+.|=++++..-..+|+.--..
T Consensus 133 dsle~LL~KFStDQsTLceveKi~~LVdmD~e~S~rLl~~~a~~ 176 (247)
T PHA03373 133 DSLNRLLEKFSTDQSTLCEVEKINRLVDMDGENSKRLLTELASA 176 (247)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3333334444456 455799999999999999999999887533
No 50
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=21.65 E-value=2e+02 Score=23.95 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=36.5
Q ss_pred HHHHHHHHHhHhccCCChhhHhhHHhhHHHHHHHHhhCCCCCC
Q 020144 134 SLGPRFYANIFKCKHISETGAQQMLLDTQAVKTILLDIPSLGR 176 (330)
Q Consensus 134 ~fi~~f~~~I~k~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~ 176 (330)
.++..+++.+.++.|++...+++|.-++..+..++..|...+.
T Consensus 72 ~i~~~~~~~l~~l~~~~~~d~~~L~~~~~~v~~~i~~L~~lg~ 114 (145)
T PF03564_consen 72 RIIQALLEELRNLPPISNDDPEALRSLVDKVNNCIRALKALGV 114 (145)
T ss_pred HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4678888889999889999999999999999999888877654
No 51
>COG3337 CRISPR system related protein [Defense mechanisms]
Probab=21.09 E-value=1.7e+02 Score=25.16 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHH-HHHHHHHHHHHHHHHhhhchH----HhhcccCCCCCCCCcCCC
Q 020144 22 AEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEF-SAVITKALVTLVLGLETKFDN----EMAGMTRVPWGSLESVGD 96 (330)
Q Consensus 22 ADYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F-~~visk~I~~LV~~le~~le~----a~~~m~~~nW~~~e~VgD 96 (330)
|.+...-+++|+++ ++.++++ +.+-...| .=|+.+++..-|..++.+.+. -.....+..|+.
T Consensus 9 a~fA~~~V~e~k~~-----~e~~~~k--y~Sy~~k~PsmI~~NGL~~TvAF~~SK~e~id~~~yls~~kea~g~------ 75 (134)
T COG3337 9 ANFALQSVQELKKS-----DEAFKTK--YGSYCHKFPSMIRLNGLRLTVAFYESKKENIDHARYLSGLKEALGV------ 75 (134)
T ss_pred HHHHHHHHHHHHhh-----HHHHHHH--HHHHHHhccHHHHhccchHHHHHHHHhhhchhhHHhcccCHHHHHH------
Confidence 44556666777666 3333333 33444455 345566777777766666542 111112222322
Q ss_pred cCccHHHHHHHHhhhHHHHhhhc-cHHHHHHHHHHHHHHHHHHHHHHhHhccCCChhhHhhH
Q 020144 97 QSEYVNGINMILTSSIPVLGSLL-SPIYFQFFLDKLASSLGPRFYANIFKCKHISETGAQQM 157 (330)
Q Consensus 97 ~S~YV~~i~~~L~~~~~~i~~~L-~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~gaeQL 157 (330)
+.+|++..++.+.+.- ...-.+.|..+.. .=...|.+.|.+|-|-+..-||-+
T Consensus 76 -------~enH~sn~l~egkd~~~~~~~~~~~ae~~~-i~~~~yte~iL~~~~w~k~vaeg~ 129 (134)
T COG3337 76 -------SENHASNDLPEGKDRGAEYRRMTEQAERAS-IWFKRYTEAILKCSPWSKPVAEGD 129 (134)
T ss_pred -------HHHHHHhhcccccccCCcccHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhhh
Confidence 2335555555544422 2345555555543 345688899999987777666654
No 52
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=20.25 E-value=4.3e+02 Score=28.26 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCC
Q 020144 22 AEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSL 91 (330)
Q Consensus 22 ADYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~ 91 (330)
|+|.-++-.+=.|..+|+-.-.-+.+|||++-+|... .+|.+|...|..+..++-..+
T Consensus 520 c~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~------------qlErrCKaSWe~L~~Iakhe~ 577 (817)
T KOG1925|consen 520 CSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLG------------QLERRCKASWESLRSIAKHEL 577 (817)
T ss_pred HHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHH------------HHHHHhhHHHHHHHHHHhhhc
Confidence 3444444443333334433333344555555544433 367888888877666654443
Done!