Query 020144
Match_columns 330
No_of_seqs 114 out of 201
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ns4_A Vacuolar protein sortin 100.0 2.4E-36 8.3E-41 280.4 15.0 140 113-252 12-181 (271)
2 2fji_1 Exocyst complex compone 99.9 8.5E-23 2.9E-27 200.9 21.0 221 12-246 136-366 (399)
3 3fhn_A Protein transport prote 98.5 8.4E-07 2.9E-11 92.9 12.8 216 13-243 460-697 (706)
4 3hr0_A COG4; conserved oligome 98.3 2.5E-05 8.5E-10 73.0 17.9 217 12-241 19-260 (263)
5 2a2f_X Exocyst complex compone 98.2 9.7E-06 3.3E-10 78.0 12.0 178 15-205 140-319 (325)
6 3swh_A MUNC13-1, protein UNC-1 97.0 0.0049 1.7E-07 59.5 12.2 191 13-215 116-337 (341)
7 3n1e_A Vacuolar protein sortin 97.0 0.018 6E-07 49.0 14.0 120 50-176 10-131 (141)
8 3mmi_A Myosin-4; globular tail 81.7 40 0.0014 32.8 19.4 165 53-231 137-309 (386)
9 2f6h_X Myosin-2, type V myosin 46.5 2.1E+02 0.0072 27.6 19.5 164 54-231 144-326 (419)
10 2a26_A Calcyclin-binding prote 43.4 57 0.0019 22.5 5.5 41 152-200 4-44 (50)
11 3jth_A Transcription activator 34.1 1.2E+02 0.004 22.3 6.6 61 187-251 5-65 (98)
12 3iot_A Maltose-binding protein 31.9 13 0.00044 35.4 0.9 24 225-250 368-391 (449)
13 1irz_A ARR10-B; helix-turn-hel 30.3 1.2E+02 0.004 22.0 5.6 43 207-249 16-59 (64)
14 2wq1_A General control protein 26.2 36 0.0012 21.6 1.9 15 29-43 2-16 (33)
15 3cuo_A Uncharacterized HTH-typ 24.9 1.7E+02 0.0058 21.0 6.0 60 189-251 8-67 (99)
16 1l6x_B Minimized B-domain of p 24.0 99 0.0034 19.7 3.6 27 223-249 7-33 (34)
17 1r1u_A CZRA, repressor protein 22.3 2.5E+02 0.0084 20.9 6.8 58 190-251 11-68 (106)
18 2lkp_A Transcriptional regulat 22.2 2.5E+02 0.0087 21.1 7.4 59 189-251 16-74 (119)
19 2r2v_A GCN4 leucine zipper; co 22.1 48 0.0016 21.2 1.9 15 29-43 3-17 (34)
20 3c3g_A Alpha/beta peptide with 21.6 52 0.0018 20.9 2.0 15 29-43 2-16 (33)
21 1ysm_A Calcyclin-binding prote 21.2 2.2E+02 0.0074 21.3 5.8 41 154-202 5-45 (77)
22 1kd8_B GABH BLL, GCN4 acid bas 20.9 1E+02 0.0036 19.8 3.3 16 28-43 2-17 (36)
23 2kko_A Possible transcriptiona 20.8 2.7E+02 0.0093 20.9 6.9 58 190-251 10-67 (108)
24 1deq_A Fibrinogen (alpha chain 20.8 79 0.0027 30.7 4.0 19 99-117 88-106 (390)
25 3c3f_A Alpha/beta peptide with 20.5 49 0.0017 21.1 1.7 16 28-43 2-17 (34)
No 1
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=280.41 Aligned_cols=140 Identities=19% Similarity=0.304 Sum_probs=124.1
Q ss_pred HHHhhhc-cHHHHHHHHHHHHHHHHHHHHHHh-HhccCC---------------Chh-hHhhHHhhHHHHHHHHhhCCCC
Q 020144 113 PVLGSLL-SPIYFQFFLDKLASSLGPRFYANI-FKCKHI---------------SET-GAQQMLLDTQAVKTILLDIPSL 174 (330)
Q Consensus 113 ~~i~~~L-~~~Y~~~fcDKlv~~fi~~f~~~I-~k~kpi---------------s~~-gaeQLLLD~~sLK~~Ll~LP~~ 174 (330)
..|...+ ++.|+||||||+|++|+++|+++| ++|||+ +++ ||||||||+|+||++|++||+.
T Consensus 12 ~~Il~~~nR~~Y~rnFcDK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~ 91 (271)
T 3ns4_A 12 AFILSQFNRDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPES 91 (271)
T ss_dssp -CCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHHHHHHHcccc
Confidence 3344544 799999999999999999999999 789999 889 9999999999999999999987
Q ss_pred CC---CCCCc---hhhHHHHHHhHHHHHHHhhHhcCCc---hhHHHHHHhhCCC-CCHHHHHHHHhhcCCC--HHHHHHH
Q 020144 175 GR---QTSNA---ASYTKFVSREMSKAEALLKVILSPV---DSVADTYRALLPE-GTPMEFQRILELKGLK--KADQQTI 242 (330)
Q Consensus 175 ~~---~~~~~---~sY~k~V~~~~~klE~lLKvL~sP~---e~~v~~Y~~L~~d-~S~~~FqkIL~LKGl~--k~eq~~l 242 (330)
+. +..+| ++|+|+|+++|++||++|||||+|. |+|+++|..|+|| +|..+|+|||+|||++ +++|.+|
T Consensus 92 ~~~~~~~~~~ts~~sytK~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~Li~dn~s~~nF~KIL~LKGv~wdl~~wk~~ 171 (271)
T 3ns4_A 92 VSNDSDLRENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALKGIPWDLALWKKM 171 (271)
T ss_dssp GCSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHTCCSCHHHHHHH
T ss_pred cccccccCCCcccchhhhHHhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCccHHHHHHH
Confidence 65 23455 5799999999999999999999984 7899999999999 9999999999999997 5799999
Q ss_pred HHHHHhcCCC
Q 020144 243 LDDFNKHGPG 252 (330)
Q Consensus 243 le~f~~~~~~ 252 (330)
++.|+....+
T Consensus 172 ~~~f~l~~~~ 181 (271)
T 3ns4_A 172 WSAYNLETDD 181 (271)
T ss_dssp HHHHHHHC--
T ss_pred HHHHhhcccc
Confidence 9999976544
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.5e-23 Score=200.93 Aligned_cols=221 Identities=10% Similarity=0.147 Sum_probs=204.4
Q ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCc--ccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCC
Q 020144 12 ERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGV--DMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWG 89 (330)
Q Consensus 12 ~~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~I--df~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~ 89 (330)
+.++|.++|++..|.+.+.+|+.++.+.+++.|.+++ +|+...|+|.++.+.|++.|+..+..+++|.|..++...|+
T Consensus 136 ~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~W~ 215 (399)
T 2fji_1 136 VEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWY 215 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGGGT
T ss_pred HHhhhhhhccHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhc
Confidence 6889999999999999999999999999999998887 89999999999999999999999999999999999999997
Q ss_pred CCCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCC---hhhHhhHHhhHHHHHH
Q 020144 90 SLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHIS---ETGAQQMLLDTQAVKT 166 (330)
Q Consensus 90 ~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis---~~gaeQLLLD~~sLK~ 166 (330)
.- ++|.+|..++.++++.++.+|++.|+..|++.+.+.++.+|+.+|.++.+++ ..+++||..|++.|+.
T Consensus 216 ~~-------~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~~ 288 (399)
T 2fji_1 216 MG-------SQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQ 288 (399)
T ss_dssp TC-------CHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHHHHH
T ss_pred CC-------cHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 52 2999999999999999999999999999999999999999999999755677 8999999999999999
Q ss_pred HHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCc-hhHHHHHHhh---CCCCCHHHHHHHHhhc-CCCHHHHHH
Q 020144 167 ILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV-DSVADTYRAL---LPEGTPMEFQRILELK-GLKKADQQT 241 (330)
Q Consensus 167 ~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~-e~~v~~Y~~L---~~d~S~~~FqkIL~LK-Gl~k~eq~~ 241 (330)
+|.++++. ...|++.|...+..|+.+.. |.+++ +.+.+.|..+ .||.+....++||.+| +++++++++
T Consensus 289 ~f~~~~~~------~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~R~D~~~~~~k~ 361 (399)
T 2fji_1 289 LFVKVLDG------NESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKK 361 (399)
T ss_dssp HHHHHTTT------CTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTTCTTCCHHHHHH
T ss_pred HHHHhccc------cchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHH
Confidence 99999972 44689999999999999999 88766 8888888665 5789999999999997 699999999
Q ss_pred HHHHH
Q 020144 242 ILDDF 246 (330)
Q Consensus 242 lle~f 246 (330)
+++..
T Consensus 362 ll~~~ 366 (399)
T 2fji_1 362 IVQQA 366 (399)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
No 3
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=98.48 E-value=8.4e-07 Score=92.90 Aligned_cols=216 Identities=16% Similarity=0.222 Sum_probs=168.9
Q ss_pred hhhhhhcccHHHHHHHHH---------HHHHHHHHhhhhhccCCcccchhhhHHHHHHHH-HHHHHHHHHhhhchHHhhc
Q 020144 13 RVICYIVNSAEYCHKTSG---------DLAESVSKIIDSQLADGVDMSEVQDEFSAVITK-ALVTLVLGLETKFDNEMAG 82 (330)
Q Consensus 13 ~~ic~IINTADYC~~Ti~---------qLeekl~e~id~~~ke~Idf~~e~D~F~~visk-~I~~LV~~le~~le~a~~~ 82 (330)
...|..||+.-|...++. +|-+.+.+..+.. ..--|++.-..|..+..+ ....+|..+...++.+++.
T Consensus 460 ~~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~t~s~--~gSIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~ 537 (706)
T 3fhn_A 460 YQTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNSTESKK--YNSLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRN 537 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCC--CSCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhcccCcc--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666665 5555566554433 234699999999999999 9999999999999999999
Q ss_pred ccC-CCCCCCCcCCC--------cCccHHHHHHHHhhhHHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChh
Q 020144 83 MTR-VPWGSLESVGD--------QSEYVNGINMILTSSIPVLGSL-LSPIYFQFFLDKLASSLGPRFYANIFKCKHISET 152 (330)
Q Consensus 83 m~~-~nW~~~e~VgD--------~S~YV~~i~~~L~~~~~~i~~~-L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~ 152 (330)
..+ ..|..++...+ .|+-...+.+.|+..+..+... |+...|+.+...+++.+..-+++.|+.....+..
T Consensus 538 Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~ 617 (706)
T 3fhn_A 538 YFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILKLNKFNQN 617 (706)
T ss_dssp HHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTTSCBCHH
T ss_pred HhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHH
Confidence 888 57987654433 2777888999999999999998 6999999999999999999999999999999999
Q ss_pred hHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCchhHHHHHH--hhCCCCCHHHHHHHHh
Q 020144 153 GAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYR--ALLPEGTPMEFQRILE 230 (330)
Q Consensus 153 gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~e~~v~~Y~--~L~~d~S~~~FqkIL~ 230 (330)
||.|+..|+..|...|. +|.. + ....|.++.-.|++|.-|.+.=.+.|. ..++.+...++...+.
T Consensus 618 Ga~Qf~~D~~~L~~v~~-lp~~---------~---~~~~~~~L~E~l~LL~L~~d~~~~~f~~~~y~~~~~~~~l~~~~~ 684 (706)
T 3fhn_A 618 GLNQFLHDFKSLSSILS-LPSH---------A---TNYKCMSLHELVKILKLKYDPNNQQFLNPEYIKTGNFTSLKEAYS 684 (706)
T ss_dssp HHHHHHHHHHHHHTTSC-CCTT---------C---CCHHHHHHHHHHHHHGGGGCGGGTTTTSHHHHHHCCCSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc-CCCc---------c---hhhHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChHHHHHhcC
Confidence 99999999999998876 6641 1 344788888999999888643222222 3335677789999999
Q ss_pred hcCCCHHHHHHHH
Q 020144 231 LKGLKKADQQTIL 243 (330)
Q Consensus 231 LKGl~k~eq~~ll 243 (330)
+|-++-+|.+..|
T Consensus 685 i~~l~~~~i~d~l 697 (706)
T 3fhn_A 685 IKYLKDTKIQDAL 697 (706)
T ss_dssp CSSSCHHHHHHHH
T ss_pred cccCCHHHHHHHH
Confidence 9999998866543
No 4
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=98.34 E-value=2.5e-05 Score=73.03 Aligned_cols=217 Identities=14% Similarity=0.266 Sum_probs=161.1
Q ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHHhhhhhccCC---------c-----ccchhhhHHHHHHHHHHHHHH-HHHhhhc
Q 020144 12 ERVICYIVNSAEYCHKTSGDLAESVSKIIDSQLADG---------V-----DMSEVQDEFSAVITKALVTLV-LGLETKF 76 (330)
Q Consensus 12 ~~~ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~---------I-----df~~e~D~F~~visk~I~~LV-~~le~~l 76 (330)
+..-|..||+.|-|.+-+.+|-..+.+.+...|... | +|.+..+.|.++++.||+.|. +.+-.++
T Consensus 19 ~~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ikprL 98 (263)
T 3hr0_A 19 KMSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKPQV 98 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HhhHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344678899988888888877666665555544332 1 344555678899999999998 5788999
Q ss_pred hHHhhcccCCCCCCCCc----CCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhccCCChh
Q 020144 77 DNEMAGMTRVPWGSLES----VGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKCKHISET 152 (330)
Q Consensus 77 e~a~~~m~~~nW~~~e~----VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~kpis~~ 152 (330)
.|.+..+..++..--|. .+..-+++..+...+...+.-++.+|.+..|..+..-+++.++..+=..|.+ +++++.
T Consensus 99 r~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~-~~fn~l 177 (263)
T 3hr0_A 99 QPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK-STFNRL 177 (263)
T ss_dssp HHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCHH
T ss_pred HHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh-CCcCch
Confidence 99998888876653211 0112257889999999999999999998889999988888877776666666 779999
Q ss_pred hHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCc-hhHHHHHHhhCC----CCCHHHHHH
Q 020144 153 GAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV-DSVADTYRALLP----EGTPMEFQR 227 (330)
Q Consensus 153 gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~-e~~v~~Y~~L~~----d~S~~~Fqk 227 (330)
||=||=-|+..|-..+..... |. |...|.|+-.|.-+|..-. |...+-|..-.+ .-|+.+=.+
T Consensus 178 Gal~LdrDvr~li~~~~~~~~----------~~--lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~r~ 245 (263)
T 3hr0_A 178 GGLQFDKELRSLIAYLTTVTT----------WT--IRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQ 245 (263)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC----------TT--HHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccc----------hh--hhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccccCCHHHHHH
Confidence 999999999999999966432 33 7899999999999997653 333222222111 368889999
Q ss_pred HHhhc-CCCHHHHHH
Q 020144 228 ILELK-GLKKADQQT 241 (330)
Q Consensus 228 IL~LK-Gl~k~eq~~ 241 (330)
++.+| +.+..+...
T Consensus 246 il~lRvDf~~e~I~~ 260 (263)
T 3hr0_A 246 VLALRIDFRSEDIKR 260 (263)
T ss_dssp HHTTBTTSCHHHHHH
T ss_pred HHHhhccCCHHHHHh
Confidence 99999 777777654
No 5
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=98.20 E-value=9.7e-06 Score=77.96 Aligned_cols=178 Identities=18% Similarity=0.217 Sum_probs=134.7
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcC
Q 020144 15 ICYIVNSAEYCHKTSGDLAESVSKIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESV 94 (330)
Q Consensus 15 ic~IINTADYC~~Ti~qLeekl~e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~V 94 (330)
+=++||+ +|...-...||+-+......+-.. .+ ...+.|-+..+.|-+.+...+..+++.-+ ++...||..-+.-
T Consensus 140 ~Qi~iNl-~~le~ac~~le~~l~~~~~~~~~~--~l-~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl-~la~yDW~~~~~~ 214 (325)
T 2a2f_X 140 IQIIIDT-QYLEKAGPFLDEFVCHMTNTERSV--SQ-TPSAMFHVARQDAEKQVGLRICSKIDEFF-ELSAYDWLLVEPP 214 (325)
T ss_dssp HHHHHHH-HHHHTTHHHHHHHHHHHHTCCC----------CCSCCCTTHHHHHHHHHHHHHHHHHH-TTCCTTCC----C
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhCCCccc--ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCCCC
Confidence 3346665 455788888888888765443222 23 25677888888899999999999999999 9999999998889
Q ss_pred CCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhHhc--cCCChhhHhhHHhhHHHHHHHHhhCC
Q 020144 95 GDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANIFKC--KHISETGAQQMLLDTQAVKTILLDIP 172 (330)
Q Consensus 95 gD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I~k~--kpis~~gaeQLLLD~~sLK~~Ll~LP 172 (330)
++.|.||.++...|+..+. ....|++......|-.....+..++++-+..- |.|++.|.+|+-+|+.-+..+.-+.|
T Consensus 215 ~~ps~yi~dli~fL~~~f~-sl~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~~ 293 (325)
T 2a2f_X 215 GIASAFITDMISYLKSTFD-SFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASEP 293 (325)
T ss_dssp CSCCHHHHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTCS
T ss_pred CCccHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999 57788999999999999999999999998854 99999999999999999999998866
Q ss_pred CCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCC
Q 020144 173 SLGRQTSNAASYTKFVSREMSKAEALLKVILSP 205 (330)
Q Consensus 173 ~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP 205 (330)
..+-. ...+...|..+..++-++++-
T Consensus 294 v~~l~-------~~~L~~~F~eLrQli~Ll~~~ 319 (325)
T 2a2f_X 294 VPGLK-------EGELSKYFLRNRQLLDLLILE 319 (325)
T ss_dssp SSSCC-------SSTTGGGGHHHHHHHHHHHCC
T ss_pred CCCcc-------cchHHHHHHHHHHHHHHHHhh
Confidence 54321 122456677777888877765
No 6
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=97.05 E-value=0.0049 Score=59.46 Aligned_cols=191 Identities=14% Similarity=0.233 Sum_probs=116.5
Q ss_pred hhhhhhcccHHHHHHHHHHHHHHHH-HhhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccC------
Q 020144 13 RVICYIVNSAEYCHKTSGDLAESVS-KIIDSQLADGVDMSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTR------ 85 (330)
Q Consensus 13 ~~ic~IINTADYC~~Ti~qLeekl~-e~id~~~ke~Idf~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~------ 85 (330)
...|++||--+|....+++|.+.+. +.+++...+ -+++-+.....++......+...+..+++...++|..
T Consensus 116 ~~~Cv~lNNie~lR~~L~~l~~~l~~~~l~~~~~~--~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m~~~l~~i~ 193 (341)
T 3swh_A 116 KVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASG--TLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDILSQVK 193 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC
T ss_pred cchhhhcccHHHHHHHHHHHHHhcchhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999988887662 111111111 1233344555555555555555666666666666541
Q ss_pred -------CCCCCCCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHh-------------Hh
Q 020144 86 -------VPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLDKLASSLGPRFYANI-------------FK 145 (330)
Q Consensus 86 -------~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcDKlv~~fi~~f~~~I-------------~k 145 (330)
..|+.. -.+-+.-+.-+...|.+....+...+.+..|..+...+-..++..+...| -+
T Consensus 194 ~~~~~~~~~~~~~--~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~ 271 (341)
T 3swh_A 194 GTGNVPASACSSV--AQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVR 271 (341)
T ss_dssp -----------CH--HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC---
T ss_pred ccccCCccccccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcc
Confidence 123211 11335567778888999999999999999999999999999999888876 11
Q ss_pred --ccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHH--hHHHHHHHhhHhcCCchhHHHHHHh
Q 020144 146 --CKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSR--EMSKAEALLKVILSPVDSVADTYRA 215 (330)
Q Consensus 146 --~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~--~~~klE~lLKvL~sP~e~~v~~Y~~ 215 (330)
-|++++--.+.|..+.+.|+.+|+. +++.- | ...+.+ +...++.+|.+-..+.+.+++.|..
T Consensus 272 ~~~r~~~~~~~~~l~~~L~~L~~fFhA----~G~GL-~---~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~~ 337 (341)
T 3swh_A 272 EEAKSLTPKQCAVVELALDTIKQYFHA----GGVGL-K---KTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQ 337 (341)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHG----GGTSC-C---HHHHHTCHHHHHHHHHHHHC-------------
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhcc----CCCCC-C---HHHHccChhHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3566666778899999999999974 12221 1 355644 5889999999999999888888764
No 7
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=97.03 E-value=0.018 Score=49.04 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=104.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCCcCccHHHHHHHHhhhHHHHhhhccHHHHHHHHH
Q 020144 50 MSEVQDEFSAVITKALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGSLLSPIYFQFFLD 129 (330)
Q Consensus 50 f~~e~D~F~~visk~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~~L~~~Y~~~fcD 129 (330)
|+.....|.+.++.--.-||..+.......++ +|..- ....|+||.+|.+.+..--..+..+|++.=.+.+..
T Consensus 10 fDkv~rdy~eH~~eI~~KLv~Im~~r~~~~l~-----~Wd~k--~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~ 82 (141)
T 3n1e_A 10 FDHITKDYHDHIAEISAKLVAIMDSLFDKLLS-----KYEVK--APVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFL 82 (141)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCC--SSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 67777888888888888888888877776654 89752 346999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhccCCChhhHhh--HHhhHHHHHHHHhhCCCCCC
Q 020144 130 KLASSLGPRFYANIFKCKHISETGAQQ--MLLDTQAVKTILLDIPSLGR 176 (330)
Q Consensus 130 Klv~~fi~~f~~~I~k~kpis~~gaeQ--LLLD~~sLK~~Ll~LP~~~~ 176 (330)
++-.+|-.++-.++-++..-++.|.+. ++-|+.-..+.|.+|+..+.
T Consensus 83 ~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d 131 (141)
T 3n1e_A 83 RINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKD 131 (141)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTTCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccCCCCc
Confidence 999999999999999998888888887 78999999999999998764
No 8
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=81.72 E-value=40 Score=32.78 Aligned_cols=165 Identities=10% Similarity=0.062 Sum_probs=109.1
Q ss_pred hhhHHHHHHH----HHHHHHHHHHhhhchHHhhcccCCCCCCCCcCCCcCccHHHHHHHHhhhHHHHhh-hccHHHHHHH
Q 020144 53 VQDEFSAVIT----KALVTLVLGLETKFDNEMAGMTRVPWGSLESVGDQSEYVNGINMILTSSIPVLGS-LLSPIYFQFF 127 (330)
Q Consensus 53 e~D~F~~vis----k~I~~LV~~le~~le~a~~~m~~~nW~~~e~VgD~S~YV~~i~~~L~~~~~~i~~-~L~~~Y~~~f 127 (330)
-+..|.++.- +--+.+++.++..+.+.+-.|........-. .+.+..+..|.+.|.......+. .+.+.....+
T Consensus 137 ~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~ilP~~~~~~~~k~~~-~~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~Ql 215 (386)
T 3mmi_A 137 YLNDLENETLKVFDKIYSTWLVKFMKHASAHIEIFDMVLNEKLFK-NSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKI 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTCGGGSS-SCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccccccccccccC-CCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3444444444 4455666667777666554443322221111 24566799999999999999888 6689999999
Q ss_pred HHHHHHHHHHHHHHHhHh-ccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCc
Q 020144 128 LDKLASSLGPRFYANIFK-CKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPV 206 (330)
Q Consensus 128 cDKlv~~fi~~f~~~I~k-~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~ 206 (330)
+..+-..+.....|+|.- -.-.+---|.|+..-++.|..-..+ ..+ . ...++..+-...++|+.|.
T Consensus 216 fsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~--~l~------~-----a~~~L~~L~QA~~LLQ~~K 282 (386)
T 3mmi_A 216 FNDTLKYLNVMLFNDLITKCPALNWKYGYEVDRNIERLVSWFEP--RIE------D-----VRPNLIQIIQAVKILQLKI 282 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHTT--TSS------C-----CGGGGHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhHHHHHHHHccCcccCcchHHHHHhhHHHHHHHHHh--ccH------H-----HHHHHHHHHHHHHHHccCC
Confidence 999999999999999854 3445777899999999999988876 221 1 1146788888888998884
Q ss_pred h--hHHHHHHhhCCCCCHHHHHHHHhh
Q 020144 207 D--SVADTYRALLPEGTPMEFQRILEL 231 (330)
Q Consensus 207 e--~~v~~Y~~L~~d~S~~~FqkIL~L 231 (330)
. .-+++-..+.+.-|+...++||.+
T Consensus 283 ~t~~Di~~i~~~C~~Lsp~QL~kIL~~ 309 (386)
T 3mmi_A 283 SNLNEFKLLFDFWYALNPAQIQAILLK 309 (386)
T ss_dssp CCHHHHHHHHTTCCSSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 2 222333344444455555555554
No 9
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=46.46 E-value=2.1e+02 Score=27.63 Aligned_cols=164 Identities=12% Similarity=0.098 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhch----HHhhcccCC-------CCC----CCCcCCCcCccHHHHHHHHhhhHHHHhh-
Q 020144 54 QDEFSAVITKALVTLVLGLETKFD----NEMAGMTRV-------PWG----SLESVGDQSEYVNGINMILTSSIPVLGS- 117 (330)
Q Consensus 54 ~D~F~~visk~I~~LV~~le~~le----~a~~~m~~~-------nW~----~~e~VgD~S~YV~~i~~~L~~~~~~i~~- 117 (330)
+..|.+++.+.-+.+++.++..+. |++.+-... .|+ ... ...+.-+..|.+.|......++.
T Consensus 144 ~~~L~~l~~~iy~~li~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~--~~~~~~~~~Il~~L~~~~~~L~~~ 221 (419)
T 2f6h_X 144 KDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFA--NTEEYTMDDILTFFNSIYWCMKSF 221 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC-----------------CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccccccccc--CCCccCHHHHHHHHHHHHHHHHHc
Confidence 445566666666667776766665 444332211 121 110 12235789999999999999887
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhHh-ccCCChhhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHH
Q 020144 118 LLSPIYFQFFLDKLASSLGPRFYANIFK-CKHISETGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAE 196 (330)
Q Consensus 118 ~L~~~Y~~~fcDKlv~~fi~~f~~~I~k-~kpis~~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE 196 (330)
.+.+.+.+.++..+...+.....|+|.- -.-.+---|.|+..-+..|+.-+.+--. .....++..+-
T Consensus 222 ~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l------------~~a~~~L~~l~ 289 (419)
T 2f6h_X 222 HIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGL------------TDGTECLQHLI 289 (419)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTC------------TTHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhHHHHHhhHHHHHHHHHHcCC------------hhHHHHHHHHH
Confidence 5689999999999999999999999954 3445666899999999999988766432 12455688888
Q ss_pred HHhhHhcCCch--hHHHHHHhhCCCCCHHHHHHHHhh
Q 020144 197 ALLKVILSPVD--SVADTYRALLPEGTPMEFQRILEL 231 (330)
Q Consensus 197 ~lLKvL~sP~e--~~v~~Y~~L~~d~S~~~FqkIL~L 231 (330)
..+++|+.+.. .-.+.-..+.+.-|+....+||.+
T Consensus 290 Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~ 326 (419)
T 2f6h_X 290 QTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQ 326 (419)
T ss_dssp HHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHh
Confidence 99999998742 233334456677788999999988
No 10
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=43.45 E-value=57 Score=22.54 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=31.8
Q ss_pred hhHhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhh
Q 020144 152 TGAQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLK 200 (330)
Q Consensus 152 ~gaeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLK 200 (330)
+.++||..|++.++..+..-.. ......++.+..++|.=++
T Consensus 4 m~~eeL~~DL~El~~Ll~~AkR--------~rVk~~L~~ei~~lE~ei~ 44 (50)
T 2a26_A 4 MASEELQKDLEEVKVLLEKATR--------KRVRDALTAEKSKIETEIK 44 (50)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCS--------HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999866554 3456688888888886554
No 11
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=34.15 E-value=1.2e+02 Score=22.26 Aligned_cols=61 Identities=18% Similarity=0.049 Sum_probs=45.7
Q ss_pred HHHHhHHHHHHHhhHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 020144 187 FVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 251 (330)
Q Consensus 187 ~V~~~~~klE~lLKvL~sP~e~~v~~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 251 (330)
........+..++|+|..|...-+..+..- +..+..++...+ |+.++-....|....+.|-
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~r~~Il~~L~~-~~~~~~ela~~l---~is~~tvs~~L~~L~~~Gl 65 (98)
T 3jth_A 5 DMEQNSAKAVVLLKAMANERRLQILCMLHN-QELSVGELCAKL---QLSQSALSQHLAWLRRDGL 65 (98)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHTTT-SCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTS
T ss_pred HHhHhHHHHHHHHHHcCCHHHHHHHHHHhc-CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 345567788999999998875555544433 556777887777 8999999999999987665
No 12
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=31.86 E-value=13 Score=35.44 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=12.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhcC
Q 020144 225 FQRILELKGLKKADQQTILDDFNKHG 250 (330)
Q Consensus 225 FqkIL~LKGl~k~eq~~lle~f~~~~ 250 (330)
...++..+.+ .++++.++.++...
T Consensus 368 ~~~i~~~~~~--~~~~~~~~~~~~~~ 391 (449)
T 3iot_A 368 AAAMATLEKL--MKAFESLKSFQQQQ 391 (449)
T ss_dssp HHHHHHHHHH--HHHHHHHHHTC---
T ss_pred HHHHhhhHHH--HHHHHHHHhhcccc
Confidence 3555555544 55666677775443
No 13
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=30.27 E-value=1.2e+02 Score=21.97 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=35.1
Q ss_pred hhHHHHHHhhCCC-CCHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 020144 207 DSVADTYRALLPE-GTPMEFQRILELKGLKKADQQTILDDFNKH 249 (330)
Q Consensus 207 e~~v~~Y~~L~~d-~S~~~FqkIL~LKGl~k~eq~~lle~f~~~ 249 (330)
+.|++.+..|-++ .++.-.-++|...|+....+...|..|+-+
T Consensus 16 ~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~ 59 (64)
T 1irz_A 16 NKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59 (64)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 4688888888655 466777788888999999999999999843
No 14
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=26.18 E-value=36 Score=21.60 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhhh
Q 020144 29 SGDLAESVSKIIDSQ 43 (330)
Q Consensus 29 i~qLeekl~e~id~~ 43 (330)
++|||+|+.+.+...
T Consensus 2 MnQLEdKVEell~~~ 16 (33)
T 2wq1_A 2 MKQLEDKIEENTSKI 16 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhh
Confidence 589999999988653
No 15
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=24.93 E-value=1.7e+02 Score=20.98 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=43.0
Q ss_pred HHhHHHHHHHhhHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 020144 189 SREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 251 (330)
Q Consensus 189 ~~~~~klE~lLKvL~sP~e~~v~~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 251 (330)
...++.+..++|.|..|...-+..+..--+..+..++.+.+ |+.++-...++....+.|-
T Consensus 8 ~~~~~~~~~~~~~l~~~~~~~il~~l~~~~~~s~~ela~~l---~is~~tvs~~l~~L~~~gl 67 (99)
T 3cuo_A 8 QASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRIT---GLSASATSQHLARMRDEGL 67 (99)
T ss_dssp GGGHHHHHHHHHHHCSHHHHHHHHHHTTCCSEEHHHHHHHH---CCCHHHHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHHHHhCChHHHHHHHHHHhCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 45677888999999888654444444322235667777666 7899999999999987664
No 16
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=23.98 E-value=99 Score=19.74 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 020144 223 MEFQRILELKGLKKADQQTILDDFNKH 249 (330)
Q Consensus 223 ~~FqkIL~LKGl~k~eq~~lle~f~~~ 249 (330)
.-|=.||.|.|+...+++.++.+.+..
T Consensus 7 naFYevLh~~nLtEeQrn~yI~slkdd 33 (34)
T 1l6x_B 7 RRFYEALHDPNLNEEQRNAKIKSIRDD 33 (34)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHhcc
Confidence 357789999999999999999998754
No 17
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=22.29 E-value=2.5e+02 Score=20.93 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=42.5
Q ss_pred HhHHHHHHHhhHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 020144 190 REMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 251 (330)
Q Consensus 190 ~~~~klE~lLKvL~sP~e~~v~~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 251 (330)
..+..+..++|.|..|...-+-.+.. -+..+..++...+ |+.++-....+....+.|-
T Consensus 11 ~~~~~~~~~~~~l~~~~r~~IL~~L~-~~~~~~~ela~~l---~is~stvs~~L~~L~~~Gl 68 (106)
T 1r1u_A 11 DTLERVTEIFKALGDYNRIRIMELLS-VSEASVGHISHQL---NLSQSNVSHQLKLLKSVHL 68 (106)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 44677888999999886544444443 3456778877766 7899999999999887654
No 18
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=22.18 E-value=2.5e+02 Score=21.07 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=43.7
Q ss_pred HHhHHHHHHHhhHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 020144 189 SREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 251 (330)
Q Consensus 189 ~~~~~klE~lLKvL~sP~e~~v~~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 251 (330)
...+..+..++|.|+.|...-+-.+..- +..|..+..+.| |+.++-....+....+.|-
T Consensus 16 ~~~~~~~~~~~~~l~~~~~~~il~~L~~-~~~s~~ela~~l---~is~stvsr~l~~Le~~Gl 74 (119)
T 2lkp_A 16 SQAAAQVASTLQALATPSRLMILTQLRN-GPLPVTDLAEAI---GMEQSAVSHQLRVLRNLGL 74 (119)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHH---SSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-CCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 4567889999999998865444444333 567888888777 7889888888888876554
No 19
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.12 E-value=48 Score=21.20 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhh
Q 020144 29 SGDLAESVSKIIDSQ 43 (330)
Q Consensus 29 i~qLeekl~e~id~~ 43 (330)
++|||+|+.+.+...
T Consensus 3 MnQledKvEel~~~~ 17 (34)
T 2r2v_A 3 LKQVADKLEEVASKL 17 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 689999999998764
No 20
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.57 E-value=52 Score=20.89 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhhh
Q 020144 29 SGDLAESVSKIIDSQ 43 (330)
Q Consensus 29 i~qLeekl~e~id~~ 43 (330)
++|||+|+.+.+...
T Consensus 2 MnQLEdKvEeLl~~~ 16 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKX 16 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 579999999998654
No 21
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=21.19 E-value=2.2e+02 Score=21.26 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=32.6
Q ss_pred HhhHHhhHHHHHHHHhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHh
Q 020144 154 AQQMLLDTQAVKTILLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVI 202 (330)
Q Consensus 154 aeQLLLD~~sLK~~Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL 202 (330)
+++|.+|++.|+.++..-.. ......++.++.+||.=++.+
T Consensus 5 ~eeL~~DLeEl~~Ll~~AkR--------~rVk~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 5 LEELQKDLEEVKVLLEKSTR--------KRLRDTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--------TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999866554 235678999999999766654
No 22
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.89 E-value=1e+02 Score=19.84 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhhh
Q 020144 28 TSGDLAESVSKIIDSQ 43 (330)
Q Consensus 28 Ti~qLeekl~e~id~~ 43 (330)
.++|||+|+.+.+...
T Consensus 2 RMnQLE~KVEeLl~~~ 17 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKL 17 (36)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHh
Confidence 4689999999998653
No 23
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=20.80 E-value=2.7e+02 Score=20.89 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=42.1
Q ss_pred HhHHHHHHHhhHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 020144 190 REMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 251 (330)
Q Consensus 190 ~~~~klE~lLKvL~sP~e~~v~~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 251 (330)
..+..+..++|.|..|...-+..+.. -+..+..++...+ |+.++-....+....+.|-
T Consensus 10 ~~~~~~~~~~~al~~~~r~~IL~~L~-~~~~s~~eLa~~l---gis~stvs~~L~~L~~~Gl 67 (108)
T 2kko_A 10 ALLDQVARVGKALANGRRLQILDLLA-QGERAVEAIATAT---GMNLTTASANLQALKSGGL 67 (108)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHHHHT-TCCEEHHHHHHHH---TCCHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCC
Confidence 45667889999999987543444433 2456677777666 7899999999999987664
No 24
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.76 E-value=79 Score=30.70 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=11.7
Q ss_pred ccHHHHHHHHhhhHHHHhh
Q 020144 99 EYVNGINMILTSSIPVLGS 117 (330)
Q Consensus 99 ~YV~~i~~~L~~~~~~i~~ 117 (330)
.|+..|.+.+++.+.....
T Consensus 88 ~y~~~~~~~lk~~~~q~~d 106 (390)
T 1deq_A 88 TLTKNIVELMRGDFAKANN 106 (390)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3777777777665555443
No 25
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.45 E-value=49 Score=21.10 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhhh
Q 020144 28 TSGDLAESVSKIIDSQ 43 (330)
Q Consensus 28 Ti~qLeekl~e~id~~ 43 (330)
.++|||+|+.+.+...
T Consensus 2 RMnQLEdKVEeLl~~~ 17 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXL 17 (34)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhh
Confidence 4689999999998654
Done!