Query 020144
Match_columns 330
No_of_seqs 114 out of 201
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 12:26:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020144.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020144hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bgwa1 a.60.2.5 (A:160-229) D 17.1 72 0.0053 21.0 4.1 61 160-248 6-67 (70)
2 d2cpga_ a.43.1.3 (A:) Transcri 16.4 80 0.0058 19.3 3.6 27 223-249 15-42 (43)
3 d1ub9a_ a.4.5.28 (A:) Hypothet 16.2 63 0.0046 22.3 3.7 57 192-251 1-59 (100)
4 d2i1qa1 a.60.4.1 (A:5-64) DNA 15.9 47 0.0034 21.6 2.7 24 226-249 32-55 (60)
5 d2hjqa1 a.140.3.2 (A:50-103) H 15.8 37 0.0027 21.7 2.0 20 230-249 12-31 (54)
6 d1rh2a_ a.26.1.3 (A:) Interfer 13.1 2.6E+02 0.019 21.3 7.1 19 183-201 109-127 (154)
7 d1pzna1 a.60.4.1 (A:35-95) DNA 12.0 47 0.0034 21.6 1.7 25 226-250 34-58 (61)
8 d2a1jb1 a.60.2.5 (B:219-296) D 11.4 1.6E+02 0.011 19.7 4.6 21 227-247 52-72 (78)
9 d2f8aa1 c.47.1.10 (A:12-195) G 10.4 36 0.0026 27.2 0.8 31 13-43 24-57 (184)
10 d1deeg_ a.8.1.1 (G:) Immunoglo 10.3 1.3E+02 0.0096 19.1 3.4 27 223-249 4-30 (51)
No 1
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=17.08 E-value=72 Score=21.02 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=36.6
Q ss_pred hHHHHHHH-HhhCCCCCCCCCCchhhHHHHHHhHHHHHHHhhHhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHH
Q 020144 160 DTQAVKTI-LLDIPSLGRQTSNAASYTKFVSREMSKAEALLKVILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKAD 238 (330)
Q Consensus 160 D~~sLK~~-Ll~LP~~~~~~~~~~sY~k~V~~~~~klE~lLKvL~sP~e~~v~~Y~~L~~d~S~~~FqkIL~LKGl~k~e 238 (330)
|+..++-+ |..+|..|. .-.+.+-++|+-++.+++ ...+.|..++|+...-
T Consensus 6 ~~~~~~~~~L~~IpgIG~------~~a~~L~~~F~s~~~l~~----------------------As~eeL~~v~GIG~~~ 57 (70)
T d2bgwa1 6 DVREWQLYILQSFPGIGR------RTAERILERFGSLERFFT----------------------ASKAEISKVEGIGEKR 57 (70)
T ss_dssp HHHHHHHHHHHTSTTCCH------HHHHHHHHHHSSHHHHTT----------------------CCHHHHHHSTTCCHHH
T ss_pred CHHHHHHHHHcCCCCcCH------HHHHHHHHHhCCHHHHHH----------------------cCHHHHHcCCCCCHHH
Confidence 44444444 447888662 124555555665555542 1235566789998887
Q ss_pred HHHHHHHHHh
Q 020144 239 QQTILDDFNK 248 (330)
Q Consensus 239 q~~lle~f~~ 248 (330)
...+.+.|+.
T Consensus 58 A~~I~~~~~~ 67 (70)
T d2bgwa1 58 AEEIKKILMT 67 (70)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 7778777764
No 2
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=16.37 E-value=80 Score=19.26 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCCCHHHHHHH-HHHHHhc
Q 020144 223 MEFQRILELKGLKKADQQTI-LDDFNKH 249 (330)
Q Consensus 223 ~~FqkIL~LKGl~k~eq~~l-le~f~~~ 249 (330)
++++|+-.=||+.|+..-.+ +|.|+++
T Consensus 15 ~~lek~a~e~g~sksa~~~~ale~y~~~ 42 (43)
T d2cpga_ 15 ENLEKMAREMGLSKSAMISVALENYKKG 42 (43)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCccHHHHHHHHHHhhccC
Confidence 57788888899999876555 9999875
No 3
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=16.16 E-value=63 Score=22.33 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHHhh--HhcCCchhHHHHHHhhCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhcCC
Q 020144 192 MSKAEALLK--VILSPVDSVADTYRALLPEGTPMEFQRILELKGLKKADQQTILDDFNKHGP 251 (330)
Q Consensus 192 ~~klE~lLK--vL~sP~e~~v~~Y~~L~~d~S~~~FqkIL~LKGl~k~eq~~lle~f~~~~~ 251 (330)
|+++..++| +|.+|..--+..|..--++.+..++.+-+ |+.++-....+....+.|-
T Consensus 1 m~~l~ei~~~~~l~~p~r~~IL~~L~~~~~~~~~eLa~~l---~is~~~vs~~l~~L~~~gl 59 (100)
T d1ub9a_ 1 MEELKEIMKSHILGNPVRLGIMIFLLPRRKAPFSQIQKVL---DLTPGNLDSHIRVLERNGL 59 (100)
T ss_dssp CHHHHHHHTCHHHHSHHHHHHHHHHHHHSEEEHHHHHHHT---TCCHHHHHHHHHHHHHTTS
T ss_pred ChhHHHHHHHHhcCCHHHHHHHHHhccCCCeeHHHHHHHH---hhccccccHHHHHHhhhce
Confidence 456667776 78888766666666555667766666644 8889999999999987765
No 4
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=15.91 E-value=47 Score=21.57 Aligned_cols=24 Identities=4% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhc
Q 020144 226 QRILELKGLKKADQQTILDDFNKH 249 (330)
Q Consensus 226 qkIL~LKGl~k~eq~~lle~f~~~ 249 (330)
+.|.+++|+...-..++++.+++.
T Consensus 32 eeL~~i~Gi~~~~A~~i~~~ar~~ 55 (60)
T d2i1qa1 32 GELTDIEGISEKAAAKMIMGARDL 55 (60)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHH
Confidence 346678999998888899988865
No 5
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=15.81 E-value=37 Score=21.71 Aligned_cols=20 Identities=35% Similarity=0.825 Sum_probs=17.0
Q ss_pred hhcCCCHHHHHHHHHHHHhc
Q 020144 230 ELKGLKKADQQTILDDFNKH 249 (330)
Q Consensus 230 ~LKGl~k~eq~~lle~f~~~ 249 (330)
+|||++|.+|..++-...+.
T Consensus 12 elk~m~k~~~e~ii~~lg~~ 31 (54)
T d2hjqa1 12 ELKGMNKAEHESIISNLGRN 31 (54)
T ss_dssp HHHTCCHHHHHHHHHHHTCC
T ss_pred HHhhcccccchhHHHhcCCC
Confidence 68999999999998887643
No 6
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.14 E-value=2.6e+02 Score=21.31 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=15.1
Q ss_pred hhHHHHHHhHHHHHHHhhH
Q 020144 183 SYTKFVSREMSKAEALLKV 201 (330)
Q Consensus 183 sY~k~V~~~~~klE~lLKv 201 (330)
.+...|++.|.+|...||=
T Consensus 109 ~~~L~lk~YF~rI~~yLk~ 127 (154)
T d1rh2a_ 109 DSILAVRKYFQRITLYLKE 127 (154)
T ss_pred cchHHHHHHHHHHHHHHHh
Confidence 3566799999999888874
No 7
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=11.95 E-value=47 Score=21.59 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhcC
Q 020144 226 QRILELKGLKKADQQTILDDFNKHG 250 (330)
Q Consensus 226 qkIL~LKGl~k~eq~~lle~f~~~~ 250 (330)
+.|.+++|+.+.--..+++.+++..
T Consensus 34 ~eL~~i~Gi~~~~A~~i~~~ar~~~ 58 (61)
T d1pzna1 34 IELKEVAGISEGTALKIIQAARKAA 58 (61)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHc
Confidence 3466779999999999999988753
No 8
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.40 E-value=1.6e+02 Score=19.65 Aligned_cols=21 Identities=14% Similarity=0.263 Sum_probs=11.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHH
Q 020144 227 RILELKGLKKADQQTILDDFN 247 (330)
Q Consensus 227 kIL~LKGl~k~eq~~lle~f~ 247 (330)
.+..+.|+...-...+.+.|+
T Consensus 52 eL~~i~GiG~~~A~~i~~~f~ 72 (78)
T d2a1jb1 52 DLALCPGLGPQKARRLFDVLH 72 (78)
T ss_dssp HHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHc
Confidence 344555555555555555554
No 9
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.36 E-value=36 Score=27.15 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=20.7
Q ss_pred hhhhhhcccHHHHHHH---HHHHHHHHHHhhhhh
Q 020144 13 RVICYIVNSAEYCHKT---SGDLAESVSKIIDSQ 43 (330)
Q Consensus 13 ~~ic~IINTADYC~~T---i~qLeekl~e~id~~ 43 (330)
-.+++|.|||.+|--| ..+|++...+.-+..
T Consensus 24 GKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g 57 (184)
T d2f8aa1 24 GKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG 57 (184)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT
T ss_pred CCEEEEEEecccCCcchhhhHHHHHhhhhhcccc
Confidence 3478899999998544 456666666554443
No 10
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=10.29 E-value=1.3e+02 Score=19.07 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 020144 223 MEFQRILELKGLKKADQQTILDDFNKH 249 (330)
Q Consensus 223 ~~FqkIL~LKGl~k~eq~~lle~f~~~ 249 (330)
.-|-.||.|+++...+++.++.+.+..
T Consensus 4 ~Afyeil~lpnl~eeQrn~fI~sLkdd 30 (51)
T d1deeg_ 4 SAFYEILNMPNLNEAQRNGFIQSLKDD 30 (51)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHHHC
T ss_pred hhHHHHHhCCCCCHHHHHHHHHHHhhC
Confidence 357789999999999999999999865
Done!