BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020146
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 67/101 (66%), Gaps = 11/101 (10%)
Query: 33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYG 92
FLTK + LV D D +I W+ G +F V++ FA+++LP+YFKHNN +SFVRQLN YG
Sbjct: 20 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYG 79
Query: 93 FKKVV---------PDR--WEFSNDCFRRGEQQLLREIQRR 122
F+KVV P+R EF + CF RG++QLL I+R+
Sbjct: 80 FRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 88.2 bits (217), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYG 92
FL K ++LVDD + +I W KDG +FV+ N FA++LLP +KHNN +SF+RQLN YG
Sbjct: 7 FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYG 66
Query: 93 FKKVVP----------DRWEFSNDCFRRGEQQLLREIQRR 122
F K+ D EFS+ F+R LL +I+R+
Sbjct: 67 FHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 12/91 (13%)
Query: 28 SMPTP-FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVR 86
SM P F+ K + +V+D++ + I W+ G + VV N F +++LP+YFKH+NF+SFVR
Sbjct: 9 SMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVR 68
Query: 87 QLNTYGFKKVV-----------PDRWEFSND 106
QLN YG+ KV RWEF N+
Sbjct: 69 QLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Query: 33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYG 92
F+ K + +V+D++ + I W+ G + VV N F +++LP+YFKH+NF+SFVRQLN YG
Sbjct: 5 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 64
Query: 93 FKKVV-----------PDRWEFSND 106
+ KV RWEF N+
Sbjct: 65 WHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Query: 33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYG 92
F+ K + +V+D++ + I W+ G + VV N F +++LP+YFKH+NF+SFVRQLN YG
Sbjct: 3 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 62
Query: 93 FKKVV-----------PDRWEFSND 106
+ KV RWEF N+
Sbjct: 63 WHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
Length = 92
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 11/85 (12%)
Query: 33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYG 92
F+ K + V+D++ + I W+ G + VV N F +++LP+YFKH+NF+SFVRQLN YG
Sbjct: 5 FVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNXYG 64
Query: 93 FKKVV-----------PDRWEFSND 106
+ KV RWEF N+
Sbjct: 65 WHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 32 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTY 91
F+ K + +V+D++ + I W+ G + VV N F +++L +YFKH+NF+SFVRQLN Y
Sbjct: 2 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNMY 61
Query: 92 GFKKVV-----------PDRWEFSND 106
G+ KV RWEF N+
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 32 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTY 91
F+ K + +V+D++ + I W+ G + VV N F +++L +YFKH+NF+SFVRQLN Y
Sbjct: 2 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNMY 61
Query: 92 GFKKVV-----------PDRWEFSND 106
G+ KV RWEF N+
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1NM5|A Chain A, R. Rubrum Transhydrogenase (Di.Q132n)2(Diii)1 Asymmetric
Complex
pdb|1NM5|B Chain B, R. Rubrum Transhydrogenase (Di.Q132n)2(Diii)1 Asymmetric
Complex
Length = 384
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 65 TIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFS 104
T +A +L+PR + N+ Q N G++ V+ +EF+
Sbjct: 118 TAYAMELMPRISRANSMDILSSQSNLAGYRAVIDGAYEFA 157
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 26 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFV 85
+R P P LT D Q +D +W+K+ T+ IFA D +++++N V
Sbjct: 520 ERGYPKP-LTSLGLPPDVQRVDAAFNWSKNKKTY------IFAGD---KFWRYNE----V 565
Query: 86 RQLNTYGFKKVVPDRW 101
++ GF K++ D W
Sbjct: 566 KKKMDPGFPKLIADAW 581
>pdb|1GEN|A Chain A, C-Terminal Domain Of Gelatinase A
Length = 218
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 26 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFV 85
+R P P LT D Q +D +W+K+ T+ IFA D +++++N V
Sbjct: 107 ERGYPKP-LTSLGLPPDVQRVDAAFNWSKNKKTY------IFAGD---KFWRYNE----V 152
Query: 86 RQLNTYGFKKVVPDRW 101
++ GF K++ D W
Sbjct: 153 KKKMDPGFPKLIADAW 168
>pdb|1RTG|A Chain A, C-terminal Domain (haemopexin-like Domain) Of Human Matrix
Metalloproteinase-2
Length = 210
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 26 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFV 85
+R P P LT D Q +D +W+K+ T+ IFA D +++++N V
Sbjct: 99 ERGYPKP-LTSLGLPPDVQRVDAAFNWSKNKKTY------IFAGD---KFWRYNE----V 144
Query: 86 RQLNTYGFKKVVPDRW 101
++ GF K++ D W
Sbjct: 145 KKKMDPGFPKLIADAW 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,096,891
Number of Sequences: 62578
Number of extensions: 259871
Number of successful extensions: 544
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 18
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)