Query 020146
Match_columns 330
No_of_seqs 263 out of 985
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:23:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 6.6E-38 1.4E-42 299.8 10.1 104 26-129 8-113 (304)
2 smart00415 HSF heat shock fact 100.0 7.2E-35 1.6E-39 240.4 7.7 93 30-122 2-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 2.2E-35 4.8E-40 241.8 4.3 93 32-124 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 1.2E-32 2.5E-37 261.9 8.1 103 26-128 6-118 (282)
5 PF00178 Ets: Ets-domain; Int 96.1 0.0034 7.3E-08 50.6 2.2 57 35-92 6-65 (85)
6 smart00413 ETS erythroblast tr 94.4 0.06 1.3E-06 43.7 4.1 56 36-92 7-65 (87)
7 KOG3806 Predicted transcriptio 90.2 0.44 9.5E-06 43.4 4.6 73 32-104 70-148 (177)
8 PF07407 Seadorna_VP6: Seadorn 88.4 0.51 1.1E-05 46.9 3.8 28 182-209 33-60 (420)
9 KOG4196 bZIP transcription fac 85.8 1.8 3.8E-05 37.8 5.3 37 183-219 83-119 (135)
10 PF02344 Myc-LZ: Myc leucine z 84.3 2 4.3E-05 28.7 3.8 28 184-211 4-31 (32)
11 PF02183 HALZ: Homeobox associ 83.9 1.8 3.9E-05 30.9 3.8 28 183-210 14-41 (45)
12 PF06005 DUF904: Protein of un 80.5 5.5 0.00012 31.2 5.7 21 196-216 47-67 (72)
13 PF06156 DUF972: Protein of un 79.2 2.6 5.6E-05 35.4 3.7 14 258-272 86-102 (107)
14 PF05377 FlaC_arch: Flagella a 77.9 7.5 0.00016 29.1 5.4 35 183-217 9-43 (55)
15 PRK13169 DNA replication intia 76.9 3.2 7E-05 35.1 3.7 25 183-207 31-55 (110)
16 PRK13922 rod shape-determining 76.8 5 0.00011 38.1 5.5 29 182-210 70-98 (276)
17 PF00170 bZIP_1: bZIP transcri 76.4 9.4 0.0002 28.5 5.8 34 183-216 28-61 (64)
18 smart00338 BRLZ basic region l 76.1 8.3 0.00018 28.8 5.4 35 183-217 28-62 (65)
19 smart00338 BRLZ basic region l 75.8 5.3 0.00012 29.8 4.3 31 182-212 34-64 (65)
20 PF07334 IFP_35_N: Interferon- 75.6 4.7 0.0001 32.1 4.1 28 183-210 2-29 (76)
21 PHA00728 hypothetical protein 75.1 3.6 7.8E-05 35.6 3.5 27 187-213 4-30 (151)
22 TIGR00219 mreC rod shape-deter 73.2 7.1 0.00015 37.8 5.5 26 182-207 67-92 (283)
23 PF12709 Kinetocho_Slk19: Cent 72.9 9.6 0.00021 31.1 5.3 37 182-218 50-86 (87)
24 TIGR02894 DNA_bind_RsfA transc 72.4 10 0.00022 34.2 5.8 37 184-220 114-150 (161)
25 KOG3119 Basic region leucine z 71.9 5.5 0.00012 38.3 4.4 43 184-226 218-260 (269)
26 PRK00888 ftsB cell division pr 71.6 8.4 0.00018 32.0 4.9 27 183-209 36-62 (105)
27 PRK14872 rod shape-determining 71.3 7.5 0.00016 38.9 5.3 29 182-210 58-86 (337)
28 KOG3119 Basic region leucine z 70.0 14 0.00029 35.7 6.6 33 182-214 223-255 (269)
29 PF07716 bZIP_2: Basic region 66.7 12 0.00026 27.1 4.3 27 183-209 27-53 (54)
30 PF06005 DUF904: Protein of un 65.5 21 0.00045 28.0 5.6 33 183-215 20-59 (72)
31 PF11544 Spc42p: Spindle pole 64.5 20 0.00043 28.6 5.3 37 186-222 3-39 (76)
32 PF00170 bZIP_1: bZIP transcri 64.3 15 0.00033 27.3 4.6 28 183-210 35-62 (64)
33 KOG4343 bZIP transcription fac 64.3 6.6 0.00014 41.5 3.4 27 181-207 309-335 (655)
34 KOG4571 Activating transcripti 62.7 13 0.00028 36.5 4.9 33 182-214 256-288 (294)
35 PF08172 CASP_C: CASP C termin 61.1 17 0.00037 34.8 5.3 41 183-224 95-139 (248)
36 smart00340 HALZ homeobox assoc 59.5 11 0.00024 26.9 2.7 28 183-210 7-34 (44)
37 TIGR03752 conj_TIGR03752 integ 58.4 14 0.00031 38.5 4.6 21 182-202 74-94 (472)
38 PF10883 DUF2681: Protein of u 58.0 21 0.00045 29.1 4.6 30 183-212 25-54 (87)
39 TIGR02449 conserved hypothetic 56.9 35 0.00075 26.4 5.4 28 183-210 9-36 (65)
40 PF14645 Chibby: Chibby family 54.7 30 0.00064 29.4 5.2 37 184-220 67-103 (116)
41 PF10845 DUF2576: Protein of u 54.3 18 0.00039 26.1 3.2 20 190-209 13-32 (48)
42 PF02183 HALZ: Homeobox associ 52.7 41 0.00089 24.0 4.9 34 183-216 7-40 (45)
43 PF08961 DUF1875: Domain of un 52.4 4.7 0.0001 38.2 0.0 42 183-224 138-180 (243)
44 PF06156 DUF972: Protein of un 52.1 28 0.00061 29.2 4.6 27 183-209 31-57 (107)
45 PF01166 TSC22: TSC-22/dip/bun 51.0 17 0.00037 27.6 2.8 25 186-210 12-36 (59)
46 PF07989 Microtub_assoc: Micro 50.0 45 0.00098 26.2 5.2 32 183-214 38-69 (75)
47 PF08776 VASP_tetra: VASP tetr 49.0 84 0.0018 22.2 5.7 33 188-220 3-37 (40)
48 PF04977 DivIC: Septum formati 48.1 55 0.0012 24.5 5.4 24 184-207 27-50 (80)
49 smart00340 HALZ homeobox assoc 48.0 34 0.00074 24.4 3.7 19 183-201 14-32 (44)
50 PRK14127 cell division protein 47.9 32 0.0007 29.1 4.3 35 183-217 32-66 (109)
51 PF04340 DUF484: Protein of un 47.6 42 0.0009 31.0 5.5 17 104-120 17-33 (225)
52 PRK09413 IS2 repressor TnpA; R 47.6 36 0.00077 28.5 4.6 28 183-210 73-100 (121)
53 COG4467 Regulator of replicati 46.5 18 0.00039 30.7 2.6 24 183-206 31-54 (114)
54 PRK13923 putative spore coat p 45.4 56 0.0012 29.8 5.8 38 183-220 113-150 (170)
55 PF07676 PD40: WD40-like Beta 45.2 14 0.0003 24.2 1.5 23 40-62 4-26 (39)
56 TIGR02894 DNA_bind_RsfA transc 44.7 61 0.0013 29.3 5.8 33 184-216 100-132 (161)
57 PF10224 DUF2205: Predicted co 43.4 59 0.0013 26.1 5.0 34 183-216 32-65 (80)
58 COG3074 Uncharacterized protei 42.3 50 0.0011 26.1 4.3 28 183-210 20-47 (79)
59 PRK00888 ftsB cell division pr 41.6 49 0.0011 27.5 4.5 43 182-224 28-73 (105)
60 KOG4196 bZIP transcription fac 41.6 55 0.0012 28.7 4.9 41 183-223 76-119 (135)
61 PRK13169 DNA replication intia 41.3 52 0.0011 27.8 4.6 32 183-214 24-55 (110)
62 PF04508 Pox_A_type_inc: Viral 41.3 33 0.00071 21.4 2.5 21 188-208 1-21 (23)
63 PF14775 NYD-SP28_assoc: Sperm 39.8 44 0.00096 25.2 3.6 26 196-221 34-59 (60)
64 PF14916 CCDC92: Coiled-coil d 39.4 10 0.00022 28.9 0.0 22 183-204 23-44 (60)
65 PF07716 bZIP_2: Basic region 37.8 44 0.00095 24.1 3.2 21 183-203 34-54 (54)
66 PF14197 Cep57_CLD_2: Centroso 37.5 49 0.0011 25.6 3.6 26 183-208 42-67 (69)
67 PF04977 DivIC: Septum formati 37.3 78 0.0017 23.7 4.8 45 182-226 18-65 (80)
68 cd07429 Cby_like Chibby, a nuc 37.2 84 0.0018 26.6 5.2 33 187-219 71-103 (108)
69 PRK10884 SH3 domain-containing 36.0 87 0.0019 29.2 5.7 29 91-119 65-95 (206)
70 PF11382 DUF3186: Protein of u 35.8 78 0.0017 31.0 5.6 35 185-219 36-70 (308)
71 PHA03155 hypothetical protein; 35.6 49 0.0011 28.3 3.6 25 182-206 9-33 (115)
72 PF09457 RBD-FIP: FIP domain ; 35.0 1.5E+02 0.0032 21.5 5.5 35 184-218 3-37 (48)
73 TIGR02209 ftsL_broad cell divi 34.6 55 0.0012 25.2 3.6 27 183-209 33-59 (85)
74 COG3074 Uncharacterized protei 34.6 1.1E+02 0.0023 24.3 5.0 32 184-215 42-73 (79)
75 PF12711 Kinesin-relat_1: Kine 34.0 84 0.0018 25.6 4.6 16 196-211 52-67 (86)
76 PRK15422 septal ring assembly 33.6 1.2E+02 0.0027 24.3 5.3 17 186-202 23-39 (79)
77 PF00631 G-gamma: GGL domain; 33.4 51 0.0011 24.9 3.1 31 189-219 3-37 (68)
78 PRK10265 chaperone-modulator p 33.0 49 0.0011 27.1 3.2 25 183-207 73-97 (101)
79 PF11577 NEMO: NF-kappa-B esse 32.9 1.1E+02 0.0025 23.7 5.0 32 183-217 8-39 (68)
80 PF06632 XRCC4: DNA double-str 32.9 86 0.0019 31.5 5.4 13 50-62 22-35 (342)
81 PF15058 Speriolin_N: Sperioli 32.8 79 0.0017 29.5 4.7 9 293-301 130-138 (200)
82 KOG3805 ERG and related ETS tr 32.7 77 0.0017 31.7 4.9 61 33-94 275-339 (361)
83 PRK10884 SH3 domain-containing 32.5 83 0.0018 29.3 4.9 26 187-212 131-156 (206)
84 PF04999 FtsL: Cell division p 32.3 66 0.0014 25.6 3.8 27 183-209 44-70 (97)
85 PRK14127 cell division protein 32.3 1E+02 0.0022 26.1 5.0 32 182-213 38-69 (109)
86 KOG0837 Transcriptional activa 32.1 76 0.0016 30.9 4.7 43 183-225 229-271 (279)
87 PF11853 DUF3373: Protein of u 32.0 35 0.00076 35.9 2.6 32 185-216 28-59 (489)
88 PRK10963 hypothetical protein; 31.8 80 0.0017 29.4 4.7 17 104-120 14-30 (223)
89 PF14645 Chibby: Chibby family 31.6 67 0.0014 27.3 3.8 29 182-210 72-100 (116)
90 KOG4005 Transcription factor X 31.5 93 0.002 30.1 5.1 20 183-202 99-118 (292)
91 PF15058 Speriolin_N: Sperioli 31.4 61 0.0013 30.2 3.8 20 185-204 9-28 (200)
92 PF06305 DUF1049: Protein of u 31.0 51 0.0011 24.3 2.7 22 186-207 46-67 (68)
93 PRK13922 rod shape-determining 31.0 68 0.0015 30.4 4.2 25 188-212 69-93 (276)
94 PF07407 Seadorna_VP6: Seadorn 30.8 62 0.0013 32.7 3.9 38 184-221 42-88 (420)
95 TIGR02449 conserved hypothetic 30.5 1.2E+02 0.0025 23.5 4.6 28 183-210 16-43 (65)
96 PF13118 DUF3972: Protein of u 30.4 1.5E+02 0.0032 25.9 5.7 38 183-220 80-120 (126)
97 TIGR00219 mreC rod shape-deter 30.3 1E+02 0.0023 29.8 5.4 27 186-212 64-90 (283)
98 PF10458 Val_tRNA-synt_C: Valy 30.1 83 0.0018 23.6 3.8 24 186-209 2-25 (66)
99 smart00224 GGL G protein gamma 30.0 51 0.0011 24.9 2.6 33 191-223 2-38 (63)
100 PHA03162 hypothetical protein; 29.9 67 0.0014 28.2 3.5 25 182-206 14-38 (135)
101 PF05812 Herpes_BLRF2: Herpesv 29.9 67 0.0014 27.7 3.5 24 183-206 5-28 (118)
102 PF07412 Geminin: Geminin; In 29.7 86 0.0019 29.3 4.5 34 183-216 120-153 (200)
103 PF12808 Mto2_bdg: Micro-tubul 29.5 95 0.0021 23.0 3.8 26 184-209 25-50 (52)
104 COG2433 Uncharacterized conser 29.3 1.2E+02 0.0025 33.0 5.9 36 184-219 425-460 (652)
105 cd00068 GGL G protein gamma su 28.7 73 0.0016 23.5 3.2 33 191-223 2-38 (57)
106 PRK10803 tol-pal system protei 27.5 1.2E+02 0.0025 29.0 5.2 37 183-219 63-99 (263)
107 PF15294 Leu_zip: Leucine zipp 27.5 1.2E+02 0.0026 29.8 5.2 33 183-215 127-159 (278)
108 PF07558 Shugoshin_N: Shugoshi 26.7 68 0.0015 22.9 2.6 23 182-204 22-44 (46)
109 PF06216 RTBV_P46: Rice tungro 26.6 1.1E+02 0.0024 30.0 4.7 38 182-219 79-116 (389)
110 PRK15422 septal ring assembly 26.1 2.2E+02 0.0047 23.0 5.5 17 183-199 27-43 (79)
111 KOG1407 WD40 repeat protein [F 26.1 43 0.00093 32.9 1.9 53 48-109 110-163 (313)
112 KOG0977 Nuclear envelope prote 26.0 1.3E+02 0.0027 32.3 5.5 27 183-209 164-190 (546)
113 PF11382 DUF3186: Protein of u 25.1 1.5E+02 0.0033 29.0 5.5 38 182-219 40-77 (308)
114 PF08653 DASH_Dam1: DASH compl 24.8 2.7E+02 0.0058 21.1 5.6 36 186-221 3-38 (58)
115 PF10224 DUF2205: Predicted co 24.6 2.5E+02 0.0055 22.4 5.8 41 184-224 19-62 (80)
116 PF04880 NUDE_C: NUDE protein, 24.4 26 0.00057 31.7 0.1 19 186-204 29-47 (166)
117 KOG4497 Uncharacterized conser 24.4 80 0.0017 32.1 3.5 76 33-113 163-258 (447)
118 PF05529 Bap31: B-cell recepto 24.1 1.4E+02 0.0029 26.9 4.7 33 183-215 156-188 (192)
119 KOG4797 Transcriptional regula 23.5 74 0.0016 27.2 2.6 21 182-202 75-95 (123)
120 PF13870 DUF4201: Domain of un 23.4 2.1E+02 0.0045 25.3 5.7 40 183-222 44-83 (177)
121 KOG0286 G-protein beta subunit 23.2 74 0.0016 31.7 2.9 27 188-214 2-28 (343)
122 PF10506 MCC-bdg_PDZ: PDZ doma 23.2 2.8E+02 0.0061 21.5 5.6 38 186-223 3-40 (67)
123 KOG4119 G protein gamma subuni 23.2 1.8E+02 0.004 22.9 4.6 33 190-222 9-41 (71)
124 KOG3863 bZIP transcription fac 22.8 1.5E+02 0.0032 32.2 5.2 72 107-221 480-551 (604)
125 PHA02109 hypothetical protein 22.5 2E+02 0.0043 26.7 5.3 42 183-224 188-229 (233)
126 COG2919 Septum formation initi 22.4 90 0.002 26.3 3.0 28 183-210 59-86 (117)
127 PF08172 CASP_C: CASP C termin 22.1 3.3E+02 0.0071 26.1 7.1 42 182-223 80-121 (248)
128 PF06305 DUF1049: Protein of u 22.1 1.2E+02 0.0025 22.3 3.3 27 188-214 41-67 (68)
129 KOG3650 Predicted coiled-coil 22.0 1.5E+02 0.0032 25.1 4.0 39 183-221 72-110 (120)
130 PF09755 DUF2046: Uncharacteri 21.5 3.4E+02 0.0074 27.1 7.1 26 185-210 24-49 (310)
131 PRK10803 tol-pal system protei 20.9 1.8E+02 0.0039 27.8 5.1 38 183-220 56-93 (263)
132 PF12325 TMF_TATA_bd: TATA ele 20.8 3E+02 0.0065 23.5 5.8 28 184-211 33-60 (120)
133 PRK01203 prefoldin subunit alp 20.6 2.9E+02 0.0064 24.1 5.8 39 184-222 3-41 (130)
134 PF12017 Tnp_P_element: Transp 20.5 2.5E+02 0.0054 26.7 5.8 28 184-211 14-41 (236)
135 cd00266 MADS_SRF_like SRF-like 20.4 60 0.0013 25.7 1.4 47 33-81 27-75 (83)
136 PF05064 Nsp1_C: Nsp1-like C-t 20.3 2E+02 0.0043 24.1 4.7 42 182-223 58-99 (116)
137 PF10211 Ax_dynein_light: Axon 20.3 1.9E+02 0.0042 26.3 4.9 33 183-215 122-154 (189)
138 PF11544 Spc42p: Spindle pole 20.3 2.5E+02 0.0055 22.4 4.9 34 183-216 14-47 (76)
139 PF15456 Uds1: Up-regulated Du 20.0 1.7E+02 0.0036 25.2 4.2 26 187-212 21-46 (124)
140 TIGR03752 conj_TIGR03752 integ 20.0 1.7E+02 0.0038 30.7 5.0 26 184-209 69-94 (472)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=6.6e-38 Score=299.82 Aligned_cols=104 Identities=60% Similarity=1.095 Sum_probs=98.7
Q ss_pred CCCCCCchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCccccc--CCceEE
Q 020146 26 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV--PDRWEF 103 (330)
Q Consensus 26 ~r~~p~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~--~d~~eF 103 (330)
..+.+++|+.|||+||+||+++++|+|+++|++|||||+.+|++.|||+||||+||+|||||||+||||||. +++|||
T Consensus 8 ~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF 87 (304)
T KOG0627|consen 8 EASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEF 87 (304)
T ss_pred ccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceee
Confidence 344778999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EcCCcCCCcHhhHHhcccccCCCCCC
Q 020146 104 SNDCFRRGEQQLLREIQRRKIQSAAT 129 (330)
Q Consensus 104 ~h~~F~Rg~~~lL~~IkRrk~~~~~~ 129 (330)
+|++|+||+++||++|+|||......
T Consensus 88 ~n~~F~rg~~~LL~~I~rrk~~~~~~ 113 (304)
T KOG0627|consen 88 SNPCFVRGQKLLLKNIKRRKSASRIF 113 (304)
T ss_pred cChhHhcChHHHHHHHhhhccccCCc
Confidence 99999999999999999999876643
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=7.2e-35 Score=240.42 Aligned_cols=93 Identities=63% Similarity=1.218 Sum_probs=89.6
Q ss_pred CCchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCcccccC-----------
Q 020146 30 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVP----------- 98 (330)
Q Consensus 30 p~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~~----------- 98 (330)
++.|+.|||+||+|+++++||+|+++|++|+|+|+.+|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 2 ~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~ 81 (105)
T smart00415 2 PPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTS 81 (105)
T ss_pred CCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCC
Confidence 357999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CceEEEcCCcCCCcHhhHHhcccc
Q 020146 99 DRWEFSNDCFRRGEQQLLREIQRR 122 (330)
Q Consensus 99 d~~eF~h~~F~Rg~~~lL~~IkRr 122 (330)
+.|+|+|++|+||+++||.+|+||
T Consensus 82 ~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 82 DQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CceEEECcCccCcCHHHHHhCcCC
Confidence 679999999999999999999996
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=2.2e-35 Score=241.79 Aligned_cols=93 Identities=53% Similarity=1.046 Sum_probs=81.6
Q ss_pred chHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCcccccCCc---------eE
Q 020146 32 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDR---------WE 102 (330)
Q Consensus 32 ~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~~d~---------~e 102 (330)
.||.|||+||+|++++++|+|+++|++|||+|+.+|+++|||+||+|+||+||+||||+|||+|+.... |+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 499999999999999999999999999999999999999999999999999999999999999997542 99
Q ss_pred EEcCCcCCCcHhhHHhcccccC
Q 020146 103 FSNDCFRRGEQQLLREIQRRKI 124 (330)
Q Consensus 103 F~h~~F~Rg~~~lL~~IkRrk~ 124 (330)
|+|++|+||++++|..|+|++.
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.97 E-value=1.2e-32 Score=261.95 Aligned_cols=103 Identities=46% Similarity=0.885 Sum_probs=94.4
Q ss_pred CCCCCCchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCccccc-C------
Q 020146 26 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV-P------ 98 (330)
Q Consensus 26 ~r~~p~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~-~------ 98 (330)
....+..|+.|||.||++|++.++|+|+++|++|||+|+++|.+.|||+||||+||+|||||||+|||+||. .
T Consensus 6 ~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~ 85 (282)
T COG5169 6 RWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSY 85 (282)
T ss_pred CCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccc
Confidence 334456899999999999999999999999999999999999999999999999999999999999999998 2
Q ss_pred ---CceEEEcCCcCCCcHhhHHhcccccCCCCC
Q 020146 99 ---DRWEFSNDCFRRGEQQLLREIQRRKIQSAA 128 (330)
Q Consensus 99 ---d~~eF~h~~F~Rg~~~lL~~IkRrk~~~~~ 128 (330)
+.|||.|++|++|..++|++|+|+|..+..
T Consensus 86 ~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~ 118 (282)
T COG5169 86 YNENVWEFGNKNFQLGMIELLKKIKRKKAPSNR 118 (282)
T ss_pred cchhheeecCchhccCcHHHHHHhhhhhcCccc
Confidence 249999999999999999999998776543
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=96.12 E-value=0.0034 Score=50.57 Aligned_cols=57 Identities=26% Similarity=0.478 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCCCCceEEcC-CCCeEEEeCCchhhhhhcc--cccCCCchhhHHhhhcccC
Q 020146 35 TKTYQLVDDQAIDDVISWNK-DGTTFVVWNPTIFARDLLP--RYFKHNNFSSFVRQLNTYG 92 (330)
Q Consensus 35 ~KLy~mv~d~~~~~iI~W~~-~G~sFvI~d~~~F~~~VLP--k~Fkh~nfsSFvRQLN~YG 92 (330)
.=|.++|.|++..++|.|.+ .+..|.|.|++++++ +.- +--...+|.++-|-|..|.
T Consensus 6 ~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~-lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 6 QFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVAR-LWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHH-HHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHH-HHHHHcCCccccHHHHHHHHHHHh
Confidence 34678899999999999999 999999999999987 332 2233467899999998774
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=94.36 E-value=0.06 Score=43.73 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=44.0
Q ss_pred HHHHHhcCCCCCCceEEcC-CCCeEEEeCCchhhhhhcc--cccCCCchhhHHhhhcccC
Q 020146 36 KTYQLVDDQAIDDVISWNK-DGTTFVVWNPTIFARDLLP--RYFKHNNFSSFVRQLNTYG 92 (330)
Q Consensus 36 KLy~mv~d~~~~~iI~W~~-~G~sFvI~d~~~F~~~VLP--k~Fkh~nfsSFvRQLN~YG 92 (330)
=|.+||.||++.++|+|.+ ++.-|.+.|+++.++- .- +-=..-||..+-|-|..|-
T Consensus 7 FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~l-WG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 7 FLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARL-WGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHH-HhhhcCCCCCCHHHHHHHHHHHH
Confidence 3678999999999999998 6889999999887773 22 2223568999999988875
No 7
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=90.24 E-value=0.44 Score=43.40 Aligned_cols=73 Identities=25% Similarity=0.410 Sum_probs=49.5
Q ss_pred chHHHHHHHhcCCCCCCceEEcC-CCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccC----cccccCCceEEE
Q 020146 32 PFLTKTYQLVDDQAIDDVISWNK-DGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYG----FKKVVPDRWEFS 104 (330)
Q Consensus 32 ~Fl~KLy~mv~d~~~~~iI~W~~-~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YG----F~Kv~~d~~eF~ 104 (330)
....=|-++|+|++..++|.|.. +|--|.+.|+++.++.-=- +-=..-||.-.-|-|..|= -+||...+..|.
T Consensus 70 qLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY~kni~~Kv~Gkr~~Yk 148 (177)
T KOG3806|consen 70 QLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYYYDKNILKKVPGKRFVYK 148 (177)
T ss_pred hHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCceeecCCceEEEE
Confidence 34445567889999999999999 7889999999999883211 2222457777777777652 244444444443
No 8
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=88.36 E-value=0.51 Score=46.89 Aligned_cols=28 Identities=32% Similarity=0.435 Sum_probs=24.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
+..+|.+||++||+||+.|+.|+.+++.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4577999999999999999999999743
No 9
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=85.81 E-value=1.8 Score=37.77 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
-..|..|+++|+.||+.+..|+.-++..|+.+..|..
T Consensus 83 k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 83 KAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3568889999999999999999999999999988855
No 10
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=84.26 E-value=2 Score=28.66 Aligned_cols=28 Identities=25% Similarity=0.710 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
..|..|.|.||+....|...|.+|+.-|
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3588999999999999999999998765
No 11
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.87 E-value=1.8 Score=30.93 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
+..|..++++|.+||..|+.|+..++..
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888888888877777654
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.54 E-value=5.5 Score=31.17 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020146 196 ENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 196 EN~~L~qEL~~mkkl~n~Il~ 216 (330)
+|..|++|....+.-+..||.
T Consensus 47 en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 47 ENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333444443
No 13
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=79.17 E-value=2.6 Score=35.41 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=9.7
Q ss_pred eeee---cCccccccccC
Q 020146 258 FGVP---IGAKRAREVNC 272 (330)
Q Consensus 258 fgV~---ig~kr~r~~~~ 272 (330)
|+|| -|..| ..+||
T Consensus 86 FHICn~~yG~~R-~~edC 102 (107)
T PF06156_consen 86 FHICNVHYGSRR-NDEDC 102 (107)
T ss_pred eeeCcHHhCCcC-CCCCC
Confidence 7888 47777 65565
No 14
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.88 E-value=7.5 Score=29.10 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSL 217 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~f 217 (330)
++.+...+..+|+||..|+.++..+.+.+.+|+.+
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688889999999999999999999988888765
No 15
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=76.89 E-value=3.2 Score=35.09 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEM 207 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~m 207 (330)
+.+|.+||.+|+.||..|+..|.++
T Consensus 31 ~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 31 LAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666666654
No 16
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=76.79 E-value=5 Score=38.06 Aligned_cols=29 Identities=31% Similarity=0.547 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
...++.+||++|++||..|..++.+++.+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l 98 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQL 98 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36779999999999999999999966543
No 17
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=76.44 E-value=9.4 Score=28.46 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
+..|.++++.|..+|..|..++..+++.+..|..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888888888888888887777654
No 18
>smart00338 BRLZ basic region leucin zipper.
Probab=76.14 E-value=8.3 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSL 217 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~f 217 (330)
...|..+++.|..+|..|..++..|+..+..+-..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666665555443
No 19
>smart00338 BRLZ basic region leucin zipper.
Probab=75.82 E-value=5.3 Score=29.85 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=27.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
.+..|..+|+.|+.++..|..|+..++.++.
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999988753
No 20
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=75.63 E-value=4.7 Score=32.07 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
+.+|.+||.+|++|...|..||.++++-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999887763
No 21
>PHA00728 hypothetical protein
Probab=75.10 E-value=3.6 Score=35.64 Aligned_cols=27 Identities=44% Similarity=0.716 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 187 VEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 187 ~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
..|+|+|++||..|.++|+++..++|+
T Consensus 4 ~teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 468899999999999999999888776
No 22
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=73.19 E-value=7.1 Score=37.78 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEM 207 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~m 207 (330)
.+.+|.+||++||+|+..|.+++..+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~ 92 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEIL 92 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999998886666653
No 23
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.90 E-value=9.6 Score=31.08 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLM 218 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl 218 (330)
.+..|..+|..|.+||..|+.+|..++.--+.+|.+|
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999999999999888888887764
No 24
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=72.42 E-value=10 Score=34.23 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
..|..+|+.|.+|+..|.+++..++.-|.-++..|-+
T Consensus 114 ~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 114 ESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666667777777777753
No 25
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=71.95 E-value=5.5 Score=38.35 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTRGGV 226 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~~~~~ 226 (330)
.++...+..|.+||..|+.++.+|++...++..++..|..+..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 4577778888899999999999999988888888877776543
No 26
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=71.62 E-value=8.4 Score=32.03 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
..++.++|++|+.+|..|..|+..++.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 556777777888888888888888765
No 27
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=71.33 E-value=7.5 Score=38.87 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
.+..|.+||++|++||..|+.++.+++.+
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l 86 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEA 86 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999887644
No 28
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=70.02 E-value=14 Score=35.67 Aligned_cols=33 Identities=33% Similarity=0.525 Sum_probs=26.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNI 214 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~I 214 (330)
....|..||+.|+.++..|++||.+++.+....
T Consensus 223 r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 223 RVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888888888888888888776544
No 29
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=66.72 E-value=12 Score=27.14 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
..+|..++..|..+|..|.+++..|++
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456888889999999999888888875
No 30
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.51 E-value=21 Score=27.97 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKE-------NAQLNKQVAEMKNLCNNIF 215 (330)
Q Consensus 183 ~~~L~eENerLrrE-------N~~L~qEL~~mkkl~n~Il 215 (330)
+..|..||+.|+.+ |..|..|..++++-.+..-
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 6666666666665544433
No 31
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=64.48 E-value=20 Score=28.59 Aligned_cols=37 Identities=16% Similarity=0.396 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020146 186 MVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYT 222 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~ 222 (330)
|.++|..|++.......|+.++..+++.+-.-|.+|.
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt 39 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYT 39 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555666665555555555555554
No 32
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=64.33 E-value=15 Score=27.29 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
+..|..+|+.|+.++..|..++..|+..
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678888888888888888888888764
No 33
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=64.32 E-value=6.6 Score=41.54 Aligned_cols=27 Identities=37% Similarity=0.636 Sum_probs=23.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHH
Q 020146 181 HTCAEMVEENDKLRKENAQLNKQVAEM 207 (330)
Q Consensus 181 ~~~~~L~eENerLrrEN~~L~qEL~~m 207 (330)
+.+.+|..|||.||+||..|+++|.-+
T Consensus 309 ~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 309 ARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 357789999999999999999999875
No 34
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=62.71 E-value=13 Score=36.52 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=24.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNI 214 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~I 214 (330)
.+..|..+|++||.....|.+|+..||+++-..
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888776544
No 35
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=61.06 E-value=17 Score=34.77 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCC
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN----LCNNIFSLMSNYTRG 224 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk----l~n~Il~fl~~~~~~ 224 (330)
..+|++|+.++++++..|++|+..+|. ||++| .||+.|-..
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi-RylqSY~~~ 139 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKI-RYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccc
Confidence 567888888888888888888888876 45554 577888863
No 36
>smart00340 HALZ homeobox associated leucin zipper.
Probab=59.47 E-value=11 Score=26.90 Aligned_cols=28 Identities=32% Similarity=0.561 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
+.-|..=-+.|..||..|.+|+..+|.+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555666666777777777766643
No 37
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.41 E-value=14 Score=38.50 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNK 202 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~q 202 (330)
.+..|..||++|++||..|++
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356688888888888888866
No 38
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=57.96 E-value=21 Score=29.11 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
...+.++|++|..||..|..|.+.....++
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888888888888777655544
No 39
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.93 E-value=35 Score=26.38 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
+..|..-.++|+.||..|++++..++..
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777776554
No 40
>PF14645 Chibby: Chibby family
Probab=54.68 E-value=30 Score=29.45 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
.....++.+|+++|..|..|-..+|-.|+=++..|.-
T Consensus 67 ~~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLte 103 (116)
T PF14645_consen 67 TADGEENQRLRKENQQLEEENNLLKLKIELLLDMLTE 103 (116)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888888888888888888778877777763
No 41
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=54.28 E-value=18 Score=26.15 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020146 190 NDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 190 NerLrrEN~~L~qEL~~mkk 209 (330)
-|+||||+..|+..+..|-.
T Consensus 13 reqlrrelnsLR~~vhelct 32 (48)
T PF10845_consen 13 REQLRRELNSLRRSVHELCT 32 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37888888888887776643
No 42
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.72 E-value=41 Score=23.97 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
+..|....+.|+.++..|.+|...++..+..+-.
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568888888888888888888888877665543
No 43
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=52.41 E-value=4.7 Score=38.18 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCC
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN-LCNNIFSLMSNYTRG 224 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk-l~n~Il~fl~~~~~~ 224 (330)
+.-|+.|||+|++||..|..|-+++.+ -+++=+.+=..|+--
T Consensus 138 Ve~L~aeNErLr~EnkqL~ae~arL~k~~~eke~~~dadfve~ 180 (243)
T PF08961_consen 138 VEFLLAENERLRRENKQLKAENARLLKGPVEKELDVDADFVEK 180 (243)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhccccchhH
Confidence 445999999999999999999999844 355555555555543
No 44
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.13 E-value=28 Score=29.18 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
+.+|.+||.+|+.||..|+..|.++.+
T Consensus 31 ~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 31 LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666666666655555443
No 45
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=50.98 E-value=17 Score=27.56 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
..+|++.||.....|..+..+++..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444433
No 46
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=50.00 E-value=45 Score=26.19 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNI 214 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~I 214 (330)
..++..+|-.|+-++..|.+|+...++++.+.
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888889999999999999888876654
No 47
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=48.98 E-value=84 Score=22.15 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=22.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHh
Q 020146 188 EENDKLRKENA-QLNKQVAEMKN-LCNNIFSLMSN 220 (330)
Q Consensus 188 eENerLrrEN~-~L~qEL~~mkk-l~n~Il~fl~~ 220 (330)
.+.++||+|.- ..++||.+||+ +++-|.+.|++
T Consensus 3 ~dle~~KqEIL~EvrkEl~K~K~EIIeA~~~eL~r 37 (40)
T PF08776_consen 3 SDLERLKQEILEEVRKELQKVKEEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888764 46888888876 46666666554
No 48
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=48.14 E-value=55 Score=24.54 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEM 207 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~m 207 (330)
.+|..+++.|+.+|..|.+|+..+
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555
No 49
>smart00340 HALZ homeobox associated leucin zipper.
Probab=47.96 E-value=34 Score=24.43 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLN 201 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~ 201 (330)
+..|.+||.||++|...|+
T Consensus 14 ce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 14 CESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777665
No 50
>PRK14127 cell division protein GpsB; Provisional
Probab=47.86 E-value=32 Score=29.07 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSL 217 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~f 217 (330)
+..+.++++.|-+||..|..|+.+++..+..+=.-
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666555544444333
No 51
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=47.60 E-value=42 Score=30.96 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=0.0
Q ss_pred EcCCcCCCcHhhHHhcc
Q 020146 104 SNDCFRRGEQQLLREIQ 120 (330)
Q Consensus 104 ~h~~F~Rg~~~lL~~Ik 120 (330)
.||.|-..+++||..|+
T Consensus 17 ~~PdFf~~~~~ll~~l~ 33 (225)
T PF04340_consen 17 QHPDFFERHPELLAELR 33 (225)
T ss_dssp -----------------
T ss_pred hCcHHHHhCHHHHHHcC
Confidence 59999999999998886
No 52
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=47.57 E-value=36 Score=28.47 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
...+.+||++|++++..|..|..-||+.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999998888766654
No 53
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=46.46 E-value=18 Score=30.73 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAE 206 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~ 206 (330)
+.+|.+||-.|+-||..|+..|..
T Consensus 31 l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 31 LGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHhhHHHHhhHHHHHHHhCC
Confidence 445666666666666666655554
No 54
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=45.38 E-value=56 Score=29.78 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
...|.++|+.|..++..|.+++..++.-+..++..|..
T Consensus 113 ~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 113 IGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888889999998854
No 55
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=45.24 E-value=14 Score=24.23 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=15.8
Q ss_pred HhcCCCCCCceEEcCCCCeEEEe
Q 020146 40 LVDDQAIDDVISWNKDGTTFVVW 62 (330)
Q Consensus 40 mv~d~~~~~iI~W~~~G~sFvI~ 62 (330)
+++.+..+....|++||+.|+..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45566666678999999998765
No 56
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=44.74 E-value=61 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
..+..||++|++|+..|.+++..|.+..+.+..
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666555555443
No 57
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=43.42 E-value=59 Score=26.07 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
+..|.+.++..+.|+..|.+|-.-|++.|++++.
T Consensus 32 L~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 32 LEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544
No 58
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.33 E-value=50 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
..-|.-|++.||..|+.|.+|....+..
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~ 47 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 3446666777777777666666654443
No 59
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.63 E-value=49 Score=27.47 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=33.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcCC
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIF---SLMSNYTRG 224 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il---~fl~~~~~~ 224 (330)
...++.++.+.++++|..|.++-.+|+..++.+- ..+...++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 4678999999999999999999999998887763 344444443
No 60
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.55 E-value=55 Score=28.69 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcC
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN---NIFSLMSNYTR 223 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n---~Il~fl~~~~~ 223 (330)
-.+|+.++..|++|...|.+|+++|+...+ ....-|.++..
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456888888888888888888888877543 33444444443
No 61
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.35 E-value=52 Score=27.83 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNI 214 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~I 214 (330)
+.+|+.++..|-.||..|+.|-.++|+.+.++
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777777777777777766654
No 62
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=41.33 E-value=33 Score=21.41 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020146 188 EENDKLRKENAQLNKQVAEMK 208 (330)
Q Consensus 188 eENerLrrEN~~L~qEL~~mk 208 (330)
+|+++||.....|.++|...+
T Consensus 1 ~E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSECR 21 (23)
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999988754
No 63
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=39.76 E-value=44 Score=25.16 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020146 196 ENAQLNKQVAEMKNLCNNIFSLMSNY 221 (330)
Q Consensus 196 EN~~L~qEL~~mkkl~n~Il~fl~~~ 221 (330)
+...|.+|...+++.-.++..+|..|
T Consensus 34 ~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 34 DRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334445555555555555555544
No 64
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=39.39 E-value=10 Score=28.91 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQV 204 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL 204 (330)
+..|..|+++|+++|..|.-+|
T Consensus 23 L~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 23 LKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHhccccceee
Confidence 4455666666666665554443
No 65
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.82 E-value=44 Score=24.12 Aligned_cols=21 Identities=48% Similarity=0.713 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQ 203 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qE 203 (330)
+..|..+|..|+.++..|.+|
T Consensus 34 ~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 34 VQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555543
No 66
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.45 E-value=49 Score=25.61 Aligned_cols=26 Identities=38% Similarity=0.661 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMK 208 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mk 208 (330)
+.....+|..|+.|+..|.+||..++
T Consensus 42 l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566677777777777777765544
No 67
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.26 E-value=78 Score=23.70 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=35.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcCCCC
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNI---FSLMSNYTRGGV 226 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~I---l~fl~~~~~~~~ 226 (330)
....+..++..|.+++..|..|...+++.++.+ -.++..+++..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~l 65 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKL 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 356788999999999999999999999888888 556666666443
No 68
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=37.21 E-value=84 Score=26.62 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 187 VEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 187 ~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
..++.+|||+|..|..|-.-+|=.++=+|..|.
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777766777776664
No 69
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.01 E-value=87 Score=29.16 Aligned_cols=29 Identities=7% Similarity=-0.003 Sum_probs=17.7
Q ss_pred cCccccc--CCceEEEcCCcCCCcHhhHHhc
Q 020146 91 YGFKKVV--PDRWEFSNDCFRRGEQQLLREI 119 (330)
Q Consensus 91 YGF~Kv~--~d~~eF~h~~F~Rg~~~lL~~I 119 (330)
.||.+|. .++--|.+..|....|.+-..+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 4677775 3345677777766666554444
No 70
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=35.81 E-value=78 Score=31.01 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
.|.++.+.||+||..|+.|+..++...+.-=.|+.
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~ 70 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIA 70 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665554444444
No 71
>PHA03155 hypothetical protein; Provisional
Probab=35.65 E-value=49 Score=28.31 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAE 206 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~ 206 (330)
...+|..|+.+|+-||..|.+.|.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999865
No 72
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=34.99 E-value=1.5e+02 Score=21.55 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLM 218 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl 218 (330)
.+|.+.+..++.+|.....++..|+.-+++||.-+
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rV 37 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLVRV 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888899999999999999999999999988654
No 73
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.64 E-value=55 Score=25.23 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
...+..+++.|+.||..|..|+..+..
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777777777777777777664
No 74
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.60 E-value=1.1e+02 Score=24.32 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIF 215 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il 215 (330)
.++...++.|.+||..|.+|+.--+.-+.-+|
T Consensus 42 q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 42 QNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777888888888887776554444443
No 75
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=34.05 E-value=84 Score=25.56 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 020146 196 ENAQLNKQVAEMKNLC 211 (330)
Q Consensus 196 EN~~L~qEL~~mkkl~ 211 (330)
||..|+.|+.++|..|
T Consensus 52 EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 52 ENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555554444
No 76
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.56 E-value=1.2e+02 Score=24.31 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNK 202 (330)
Q Consensus 186 L~eENerLrrEN~~L~q 202 (330)
|.-|++.||.+|..|.+
T Consensus 23 LqmEieELKekn~~L~~ 39 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444443333333
No 77
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=33.37 E-value=51 Score=24.95 Aligned_cols=31 Identities=23% Similarity=0.549 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 020146 189 ENDKLRKENAQLNKQVAE----MKNLCNNIFSLMS 219 (330)
Q Consensus 189 ENerLrrEN~~L~qEL~~----mkkl~n~Il~fl~ 219 (330)
+.++|++|+..|+.||.. .-+-|..|+.|..
T Consensus 3 ~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~ 37 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELERERIKVSKACKELIEYCE 37 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc
Confidence 345566666666666555 4445777777765
No 78
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=33.05 E-value=49 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEM 207 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~m 207 (330)
.-+|.++++.|++|+..|++.|...
T Consensus 73 vl~LLd~i~~Lr~el~~L~~~l~~~ 97 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998876553
No 79
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=32.92 E-value=1.1e+02 Score=23.68 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSL 217 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~f 217 (330)
+..|..||..|| ..|++--..||+.|+.|..+
T Consensus 8 l~~LL~EN~~LK---ealrQ~N~~Mker~e~l~~w 39 (68)
T PF11577_consen 8 LQELLQENQDLK---EALRQNNQAMKERFEELLAW 39 (68)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455666665554 33444445577777777665
No 80
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=32.89 E-value=86 Score=31.47 Aligned_cols=13 Identities=46% Similarity=0.999 Sum_probs=8.5
Q ss_pred eEEcCC-CCeEEEe
Q 020146 50 ISWNKD-GTTFVVW 62 (330)
Q Consensus 50 I~W~~~-G~sFvI~ 62 (330)
|+|..+ |..|.|.
T Consensus 22 ~~W~~~~~~~F~i~ 35 (342)
T PF06632_consen 22 VSWEKDLGSGFDIT 35 (342)
T ss_dssp EEESSSGGGEEEEE
T ss_pred EEeccCCCCceEEE
Confidence 689875 3457764
No 81
>PF15058 Speriolin_N: Speriolin N terminus
Probab=32.83 E-value=79 Score=29.51 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=5.8
Q ss_pred cccCccCCC
Q 020146 293 SEPLDYQMG 301 (330)
Q Consensus 293 ~~~~~~~~~ 301 (330)
++|++..|+
T Consensus 130 ~~~~a~sPg 138 (200)
T PF15058_consen 130 ASPSAVSPG 138 (200)
T ss_pred ccccCCCCC
Confidence 666666665
No 82
>KOG3805 consensus ERG and related ETS transcription factors [Transcription]
Probab=32.70 E-value=77 Score=31.70 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=39.6
Q ss_pred hHHHHHHHhcCCC-CCCceEEcCCC-CeEEEeCCchhhhhhcc--cccCCCchhhHHhhhcccCcc
Q 020146 33 FLTKTYQLVDDQA-IDDVISWNKDG-TTFVVWNPTIFARDLLP--RYFKHNNFSSFVRQLNTYGFK 94 (330)
Q Consensus 33 Fl~KLy~mv~d~~-~~~iI~W~~~G-~sFvI~d~~~F~~~VLP--k~Fkh~nfsSFvRQLN~YGF~ 94 (330)
.-.=|.++|..|. +...|+|-+-- ..|-|.+..++++ +.- |-=+.-||.-.-|-|..||=+
T Consensus 275 LwQFLkELL~sP~~~~~~IrWVDkdKGiFkiess~~lAr-lWG~RKNR~~MnYdKlsRslRqYyKk 339 (361)
T KOG3805|consen 275 LWQFLKELLYSPEQMGSCIRWVDKDKGIFKIESSEKLAR-LWGIRKNRKAMNYDKLSRSLRQYYKK 339 (361)
T ss_pred HHHHHHHHHhChhhhchheEeeccCCceEEeecHHHHHH-HhhhhcccccccHHHHHHHHHHHhhc
Confidence 3344567788887 88999997544 4677776644444 211 223456788888888888743
No 83
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.45 E-value=83 Score=29.26 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 187 VEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 187 ~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
.+++..|+.||..|.+||..+++..+
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555544433
No 84
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=32.30 E-value=66 Score=25.63 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
...+..|+++|..||..|.-|++.+..
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 556777777777777777777777765
No 85
>PRK14127 cell division protein GpsB; Provisional
Probab=32.28 E-value=1e+02 Score=26.10 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=26.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
.+..|..||.+|+.+|..|..+|..++.....
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36678999999999999999999998876553
No 86
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=32.13 E-value=76 Score=30.94 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTRGG 225 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~~~~ 225 (330)
+..|++.++.|+-+|..|-.++.+++++++++++-+..++...
T Consensus 229 isrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ng 271 (279)
T KOG0837|consen 229 ISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNG 271 (279)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568888888888999999999999999999999888877654
No 87
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.03 E-value=35 Score=35.89 Aligned_cols=32 Identities=13% Similarity=0.355 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
++++++|.|++|...|++++..|++.++++-.
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 45559999999999999998888776666544
No 88
>PRK10963 hypothetical protein; Provisional
Probab=31.78 E-value=80 Score=29.35 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.5
Q ss_pred EcCCcCCCcHhhHHhcc
Q 020146 104 SNDCFRRGEQQLLREIQ 120 (330)
Q Consensus 104 ~h~~F~Rg~~~lL~~Ik 120 (330)
.||.|--.+++||..|+
T Consensus 14 ~~PdFf~~h~~Ll~~L~ 30 (223)
T PRK10963 14 QNPDFFIRNARLVEQMR 30 (223)
T ss_pred HCchHHhhCHHHHHhcc
Confidence 48999999999999765
No 89
>PF14645 Chibby: Chibby family
Probab=31.60 E-value=67 Score=27.31 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
....|.++|.+|+.||+.|+-++.-|=..
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDM 100 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDM 100 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668899999999999998887766544
No 90
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=31.53 E-value=93 Score=30.11 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNK 202 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~q 202 (330)
+.+|.+||++|+-||..|+.
T Consensus 99 i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 99 IKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766543
No 91
>PF15058 Speriolin_N: Speriolin N terminus
Probab=31.36 E-value=61 Score=30.20 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQV 204 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL 204 (330)
.|.++||||=+||+.|++.+
T Consensus 9 GlrhqierLv~ENeeLKKlV 28 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLV 28 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 34444445444444444333
No 92
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.05 E-value=51 Score=24.33 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNKQVAEM 207 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~m 207 (330)
+..++.+++++...|.+|+.++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555554443
No 93
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.96 E-value=68 Score=30.39 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 188 EENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 188 eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
.....|++||..|++|+.+++....
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444
No 94
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=30.82 E-value=62 Score=32.65 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhh
Q 020146 184 AEMVEENDKLRKENAQLNKQVAE---------MKNLCNNIFSLMSNY 221 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~---------mkkl~n~Il~fl~~~ 221 (330)
..|..||+.|+.|...|..|..+ ++..++.|+.+|.+.
T Consensus 42 ~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 42 HSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46889999998888888666554 233466777777664
No 95
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=30.49 E-value=1.2e+02 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
+..|..||..|+.+...+..|-.+++..
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888888888777777776666543
No 96
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=30.36 E-value=1.5e+02 Score=25.85 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLC---NNIFSLMSN 220 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~---n~Il~fl~~ 220 (330)
+.+..+-++.|+.||..|+.-|..|+.++ .+-|..|..
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~ 120 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLRE 120 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34456677999999999999999999998 666666653
No 97
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.31 E-value=1e+02 Score=29.79 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
-..+...|++||..|++|+.++++..+
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666788999999999888744433
No 98
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.09 E-value=83 Score=23.65 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~mkk 209 (330)
+..|.++|.++...|..++..+.+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666665544
No 99
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=30.03 E-value=51 Score=24.86 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcC
Q 020146 191 DKLRKENAQLNKQVAE----MKNLCNNIFSLMSNYTR 223 (330)
Q Consensus 191 erLrrEN~~L~qEL~~----mkkl~n~Il~fl~~~~~ 223 (330)
+.++++|..|+.||.. ..+-+..|+.+...|..
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~~~~ 38 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHAE 38 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHcCCC
Confidence 3566666666666665 44557777777665443
No 100
>PHA03162 hypothetical protein; Provisional
Probab=29.89 E-value=67 Score=28.21 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAE 206 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~ 206 (330)
.+.+|..|+.+|+-||..|.+.|.+
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999998843
No 101
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=29.89 E-value=67 Score=27.66 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAE 206 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~ 206 (330)
+.+|..|..+|+-||..|.+.|.+
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567899999999999999888765
No 102
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=29.70 E-value=86 Score=29.30 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
+.+-.+||+.|.++...|..|+..||+....+..
T Consensus 120 L~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 120 LEEALEENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456689999999999988888888875444443
No 103
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.53 E-value=95 Score=23.00 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
.....++..|..||..|+.+|..+|.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667888888888888888877663
No 104
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.30 E-value=1.2e+02 Score=33.02 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
..+.+.+++|..||..|..++.+|++.+.+|..-|.
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666665555555444
No 105
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=28.73 E-value=73 Score=23.54 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcC
Q 020146 191 DKLRKENAQLNKQVAE----MKNLCNNIFSLMSNYTR 223 (330)
Q Consensus 191 erLrrEN~~L~qEL~~----mkkl~n~Il~fl~~~~~ 223 (330)
+.+++++..|+.|+.. ..+-+..|+.|...|..
T Consensus 2 ~~~~~~veqLr~el~~~RikvS~a~~~l~~y~e~~~~ 38 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAE 38 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCC
Confidence 3455666666666655 44558888888777654
No 106
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.54 E-value=1.2e+02 Score=29.04 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
+..|..|+.+||-++..+.-+|.+|++-..++..-|-
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666667666655444444433
No 107
>PF15294 Leu_zip: Leucine zipper
Probab=27.46 E-value=1.2e+02 Score=29.75 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIF 215 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il 215 (330)
.+-|..|+.+|+.||..|+..|..+.+.|...+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l 159 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSAL 159 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999988877766555
No 108
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=26.73 E-value=68 Score=22.86 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=12.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQV 204 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL 204 (330)
.+.+|..++..|..||..|+.++
T Consensus 22 ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 22 KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHh
Confidence 46778888888998888888765
No 109
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=26.65 E-value=1.1e+02 Score=29.96 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
.+..|.+++..|++.|+.++++++.||..++.+..=|.
T Consensus 79 e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~k 116 (389)
T PF06216_consen 79 EWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVK 116 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 36679999999999999999999999988776665544
No 110
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.13 E-value=2.2e+02 Score=22.96 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQ 199 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~ 199 (330)
+.+|+++|..|.+|+..
T Consensus 27 ieELKekn~~L~~e~~~ 43 (79)
T PRK15422 27 IEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666665554333
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=26.12 E-value=43 Score=32.91 Aligned_cols=53 Identities=32% Similarity=0.376 Sum_probs=36.6
Q ss_pred CceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCcccccCC-ceEEEcCCcC
Q 020146 48 DVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPD-RWEFSNDCFR 109 (330)
Q Consensus 48 ~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~~d-~~eF~h~~F~ 109 (330)
-+|.|+|+|..|++.+.+.....|--+-|+ -++.|-|.+-..+ .|-+.|..|.
T Consensus 110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~---------~~~~~~~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 110 INITWSPDGEYIAVGNKDDRITFIDARTYK---------IVNEEQFKFEVNEISWNNSNDLFF 163 (313)
T ss_pred eEEEEcCCCCEEEEecCcccEEEEEecccc---------eeehhcccceeeeeeecCCCCEEE
Confidence 468999999999999887766544444332 3566777776554 4777777665
No 112
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.99 E-value=1.3e+02 Score=32.29 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
...|.+|+.+|++||..|+.+|..+|+
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 567999999999999999999999987
No 113
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=25.05 E-value=1.5e+02 Score=29.01 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
+...|.+||++|+.|+..|..++....+.++.+..-|.
T Consensus 40 ~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv 77 (308)
T PF11382_consen 40 QFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLV 77 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999888887664
No 114
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.76 E-value=2.7e+02 Score=21.06 Aligned_cols=36 Identities=8% Similarity=0.277 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020146 186 MVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNY 221 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~ 221 (330)
|....+.|-.+...|...+.+|+.+.+.|..|-..+
T Consensus 3 l~~~f~eL~D~~~~L~~n~~~L~~ihesL~~FNESF 38 (58)
T PF08653_consen 3 LEPQFAELSDSMETLDKNMEQLNQIHESLSDFNESF 38 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888999999999998875543
No 115
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.60 E-value=2.5e+02 Score=22.45 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCC
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS---LMSNYTRG 224 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~---fl~~~~~~ 224 (330)
..|..++..|+..-..|..++...|..|++|-. +|+.|+..
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777776654 56666653
No 116
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.42 E-value=26 Score=31.71 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=2.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNKQV 204 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL 204 (330)
|..++.|||.|...|++||
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556665
No 117
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=24.42 E-value=80 Score=32.12 Aligned_cols=76 Identities=21% Similarity=0.472 Sum_probs=45.4
Q ss_pred hHHHHHHHhcCCCCC----CceEEcCCCCeEEEeCCchhhhhhcc----------------cccCCCchhhHHhhhcccC
Q 020146 33 FLTKTYQLVDDQAID----DVISWNKDGTTFVVWNPTIFARDLLP----------------RYFKHNNFSSFVRQLNTYG 92 (330)
Q Consensus 33 Fl~KLy~mv~d~~~~----~iI~W~~~G~sFvI~d~~~F~~~VLP----------------k~Fkh~nfsSFvRQLN~YG 92 (330)
|..|-|.++..=.++ .-|.|+|||....|||.-.=.+ |+- +|..-..|.--+|-||..-
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 556778888653332 2389999999999998643222 321 2223344566667777665
Q ss_pred cccccCCceEEEcCCcCCCcH
Q 020146 93 FKKVVPDRWEFSNDCFRRGEQ 113 (330)
Q Consensus 93 F~Kv~~d~~eF~h~~F~Rg~~ 113 (330)
++-.. ||-|..=.++-.
T Consensus 242 Wk~f~----eflhl~s~~dp~ 258 (447)
T KOG4497|consen 242 WKPFG----EFLHLCSYHDPT 258 (447)
T ss_pred eeehh----hhccchhccCch
Confidence 55432 566665555543
No 118
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.12 E-value=1.4e+02 Score=26.85 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIF 215 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il 215 (330)
...+.+|++.|++|......|+..||+.++++-
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888888887764
No 119
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=23.54 E-value=74 Score=27.17 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNK 202 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~q 202 (330)
+..+|.+.|.+|.+||..|+.
T Consensus 75 qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 75 QIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
No 120
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=23.36 E-value=2.1e+02 Score=25.35 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYT 222 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~ 222 (330)
+-.|.-||..|......=..||.+||..+.+.++.|+.+-
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k 83 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777666667888999999999988887543
No 121
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=23.23 E-value=74 Score=31.74 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 188 EENDKLRKENAQLNKQVAEMKNLCNNI 214 (330)
Q Consensus 188 eENerLrrEN~~L~qEL~~mkkl~n~I 214 (330)
+|.|.|++|.+.|+++|.+-|+.+++.
T Consensus 2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~ 28 (343)
T KOG0286|consen 2 EELEQLRQEAEQLKNQIRDARKKLNDV 28 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 678999999999999999998887776
No 122
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=23.22 E-value=2.8e+02 Score=21.49 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020146 186 MVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTR 223 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~~ 223 (330)
|...+|.|+-.|..|..-+...+..+..+...+.+|-.
T Consensus 3 L~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es 40 (67)
T PF10506_consen 3 LKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYES 40 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788999999999999999999999999988887764
No 123
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=23.15 E-value=1.8e+02 Score=22.85 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020146 190 NDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYT 222 (330)
Q Consensus 190 NerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~ 222 (330)
+.++++++.+|+.|+.-.|..+.+.-.-|..|.
T Consensus 9 ~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~ 41 (71)
T KOG4119|consen 9 KPQMKKEVEQLKLEANIERIKVSKAAAELLEYC 41 (71)
T ss_pred hHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence 344455555555555544444444444444444
No 124
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=22.81 E-value=1.5e+02 Score=32.20 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred CcCCCcHhhHHhcccccCCCCCCCCCcccccCCCCCCCCCccCCCCCcccccccCCCCCccCcCCccccccCCCCchhhH
Q 020146 107 CFRRGEQQLLREIQRRKIQSAATAQPVTVAVPAVVPVAKPIVSPSNSGEEQVISSNSSPAAGAAGVTAHTCGGGHTCAEM 186 (330)
Q Consensus 107 ~F~Rg~~~lL~~IkRrk~~~~~~~~~~~~tv~~~~P~~~~~~Sps~sge~Q~lss~ss~~~~~~~~~~~~~~~~~~~~~L 186 (330)
.|..-+..|+..|+||...+.++ ..-+---...+..|
T Consensus 480 ~lte~QLslIrDIRRRgKNkvAA-------------------------------------------QnCRKRKLd~I~nL 516 (604)
T KOG3863|consen 480 KLTEEQLSLIRDIRRRGKNKVAA-------------------------------------------QNCRKRKLDCILNL 516 (604)
T ss_pred ccCHHHHHHhhccccccccchhc-------------------------------------------cchhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020146 187 VEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNY 221 (330)
Q Consensus 187 ~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~ 221 (330)
+.|++.|++|...|.+|-.++.+....+.+-|+.+
T Consensus 517 E~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L 551 (604)
T KOG3863|consen 517 EDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSEL 551 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 125
>PHA02109 hypothetical protein
Probab=22.45 E-value=2e+02 Score=26.72 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTRG 224 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~~~ 224 (330)
+.+-.+|+-.|--....|..|+.|+|..+.++-+.+..|++.
T Consensus 188 ~~~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 188 LTDKLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344478888888888999999999999999999999888753
No 126
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=22.36 E-value=90 Score=26.25 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
.+.+..||+.|..++..|..|+..|+.-
T Consensus 59 i~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 59 IAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3457777777777777777777777655
No 127
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.13 E-value=3.3e+02 Score=26.07 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=34.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTR 223 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~~ 223 (330)
-++-+..|=+|.|+.|..|..|+.++++.+..+-.-+.+.-.
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999998888888777764433
No 128
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.09 E-value=1.2e+02 Score=22.35 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 188 EENDKLRKENAQLNKQVAEMKNLCNNI 214 (330)
Q Consensus 188 eENerLrrEN~~L~qEL~~mkkl~n~I 214 (330)
-..-++++++..+++|+.++++..+++
T Consensus 41 ~~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 41 PSRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344788999999999999998877653
No 129
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.02 E-value=1.5e+02 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNY 221 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~ 221 (330)
+.+|...++..|.||-.|+.|-.-+-+.+++++.--+-|
T Consensus 72 LdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVF 110 (120)
T KOG3650|consen 72 LDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVF 110 (120)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhh
Confidence 556777778888888888888777777777776543333
No 130
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.48 E-value=3.4e+02 Score=27.07 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
.|...++.|+++|..|+.|+...|..
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~ 49 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKAR 49 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445555555555555555444433
No 131
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.87 E-value=1.8e+02 Score=27.77 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
..+|..+++.|++|+..|+-++.++...+++|..--..
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999888888888776554
No 132
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.75 E-value=3e+02 Score=23.54 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
..+.+++.+|.++...|..|+.++-..+
T Consensus 33 ~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 33 ASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544333
No 133
>PRK01203 prefoldin subunit alpha; Provisional
Probab=20.65 E-value=2.9e+02 Score=24.06 Aligned_cols=39 Identities=5% Similarity=0.133 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYT 222 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~ 222 (330)
.++.+|.+.|+.+...|.+++..++....++...+..+-
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~ 41 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLS 41 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999999999999888888777666553
No 134
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.48 E-value=2.5e+02 Score=26.73 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
..+..||+.|+.....|..++.++|+.+
T Consensus 14 ~~~~~e~~~Lk~kir~le~~l~~Lk~~l 41 (236)
T PF12017_consen 14 RTLKIENKKLKKKIRRLEKELKKLKQKL 41 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777766654
No 135
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=20.35 E-value=60 Score=25.68 Aligned_cols=47 Identities=17% Similarity=0.436 Sum_probs=33.3
Q ss_pred hHHHHHHH--hcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCch
Q 020146 33 FLTKTYQL--VDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNF 81 (330)
Q Consensus 33 Fl~KLy~m--v~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nf 81 (330)
...|.+++ |.|-.. .+|-|+++|..+.+|.... ...+|-+|+....+
T Consensus 27 l~kKa~ELs~Lc~~~v-~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~ 75 (83)
T cd00266 27 LFKKASELSTLCGAEV-AVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSAL 75 (83)
T ss_pred HHHHHHHHHHhhCCcE-EEEEECCCCCcceecCcHH-HHHHHHHHhhcCHh
Confidence 45555544 455544 4788999999999998877 77788887755443
No 136
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=20.33 E-value=2e+02 Score=24.13 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTR 223 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~~ 223 (330)
.+..|..++.++......|.++|..+....+.|-.+|..|=.
T Consensus 58 ~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~ 99 (116)
T PF05064_consen 58 KISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEK 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999998888876654
No 137
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.32 E-value=1.9e+02 Score=26.33 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIF 215 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il 215 (330)
..+|..+++.|+.++..|..++..++..++.+-
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888777777766655543
No 138
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=20.29 E-value=2.5e+02 Score=22.41 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
+.+-.+|+++|..=...|+.+|.++-.+-.++=.
T Consensus 14 L~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~ 47 (76)
T PF11544_consen 14 LNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQD 47 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999998776555433
No 139
>PF15456 Uds1: Up-regulated During Septation
Probab=20.03 E-value=1.7e+02 Score=25.20 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 187 VEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 187 ~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
.+|++.||||...|...+..+++.+.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999988888887644
No 140
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.02 E-value=1.7e+02 Score=30.72 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
.+|..+.+.|.+||..|..|..+||+
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544
Done!