Query 020146
Match_columns 330
No_of_seqs 263 out of 985
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 1.5E-39 5.2E-44 268.0 6.4 93 30-122 4-106 (106)
2 2ldu_A Heat shock factor prote 100.0 3.9E-39 1.3E-43 273.0 7.9 101 25-125 12-123 (125)
3 3hts_B Heat shock transcriptio 100.0 4.6E-33 1.6E-37 228.3 4.5 77 31-107 13-100 (102)
4 1deb_A APC protein, adenomatou 93.0 0.21 7.3E-06 35.6 5.6 32 182-213 4-35 (54)
5 1fli_A FLI-1; transcription/DN 91.5 0.078 2.7E-06 42.8 2.1 60 33-92 8-68 (98)
6 1awc_A Protein (GA binding pro 91.4 0.084 2.9E-06 43.4 2.2 68 37-104 7-79 (110)
7 2wt7_A Proto-oncogene protein 91.2 0.48 1.6E-05 34.7 6.0 38 183-220 25-62 (63)
8 1bc8_C SAP-1, protein (SAP-1 E 90.7 0.073 2.5E-06 42.6 1.2 73 33-105 7-84 (93)
9 2ypr_A Protein FEV; transcript 90.4 0.09 3.1E-06 42.7 1.5 73 33-105 10-87 (102)
10 4avp_A ETS translocation varia 90.4 0.12 4.1E-06 42.2 2.2 73 32-104 13-90 (106)
11 1hjb_A Ccaat/enhancer binding 88.5 0.5 1.7E-05 37.2 4.4 36 185-220 40-75 (87)
12 1gvj_A C-ETS-1 protein, P54; t 87.9 0.14 4.7E-06 44.1 0.9 78 28-105 37-119 (146)
13 3m48_A General control protein 87.7 0.85 2.9E-05 29.7 4.3 28 184-211 3-30 (33)
14 3jtg_A ETS-related transcripti 87.5 0.46 1.6E-05 38.6 3.7 72 33-104 7-85 (103)
15 2dao_A Transcription factor ET 87.2 0.37 1.3E-05 40.0 3.1 72 33-104 11-88 (118)
16 1hjb_A Ccaat/enhancer binding 86.4 1.3 4.5E-05 34.8 5.7 35 182-216 44-78 (87)
17 1ci6_A Transcription factor AT 85.5 2 6.7E-05 31.5 6.0 37 183-219 25-61 (63)
18 2nny_A C-ETS-1 protein, P54; p 85.5 0.48 1.6E-05 41.7 3.0 76 29-104 63-143 (171)
19 1gu4_A CAAT/enhancer binding p 85.4 0.48 1.6E-05 36.6 2.7 32 185-216 40-71 (78)
20 2yy0_A C-MYC-binding protein; 85.4 1.6 5.3E-05 31.2 5.2 27 183-209 21-47 (53)
21 1kd8_B GABH BLL, GCN4 acid bas 85.3 1.9 6.3E-05 28.6 5.0 31 183-213 3-33 (36)
22 1wwx_A E74-like factor 5 ESE-2 85.0 0.71 2.4E-05 37.7 3.6 64 29-92 7-73 (107)
23 1t2k_D Cyclic-AMP-dependent tr 84.4 2.2 7.7E-05 30.8 5.8 36 183-218 24-59 (61)
24 3c3g_A Alpha/beta peptide with 84.2 1.7 5.7E-05 28.3 4.3 30 183-212 2-31 (33)
25 1uo4_A General control protein 83.9 1.7 5.8E-05 28.4 4.3 29 183-211 3-31 (34)
26 3he5_B Synzip2; heterodimeric 83.2 4.1 0.00014 28.2 6.3 38 183-220 5-42 (52)
27 3c3f_A Alpha/beta peptide with 82.9 2 6.9E-05 28.0 4.3 30 183-212 3-32 (34)
28 1jnm_A Proto-oncogene C-JUN; B 82.8 1.1 3.9E-05 32.5 3.7 37 183-219 24-60 (62)
29 1hbx_G ETS-domain protein ELK- 82.7 0.24 8.3E-06 43.0 -0.0 73 33-105 8-85 (157)
30 1gu4_A CAAT/enhancer binding p 82.4 1.2 4.1E-05 34.3 3.8 31 182-212 44-74 (78)
31 4dzn_A Coiled-coil peptide CC- 82.1 2.3 7.8E-05 27.0 4.3 28 183-210 4-31 (33)
32 1kd8_A GABH AIV, GCN4 acid bas 82.0 2.9 9.9E-05 27.7 4.9 30 183-212 3-32 (36)
33 1t2k_D Cyclic-AMP-dependent tr 81.8 2 6.7E-05 31.1 4.6 29 183-211 31-59 (61)
34 2wq1_A General control protein 81.8 2.8 9.6E-05 27.2 4.7 30 183-212 2-31 (33)
35 2dgc_A Protein (GCN4); basic d 81.4 1.4 4.8E-05 32.4 3.7 30 183-212 32-61 (63)
36 1ci6_A Transcription factor AT 80.7 2 6.8E-05 31.5 4.3 32 182-213 31-62 (63)
37 2hy6_A General control protein 80.5 3.2 0.00011 27.1 4.6 30 183-212 3-32 (34)
38 1dh3_A Transcription factor CR 80.2 1 3.5E-05 32.3 2.5 30 183-212 24-53 (55)
39 2oxj_A Hybrid alpha/beta pepti 79.9 3.5 0.00012 26.9 4.7 30 183-212 3-32 (34)
40 1yo5_C SAM pointed domain cont 79.8 0.83 2.8E-05 36.7 2.1 65 30-94 10-77 (97)
41 2lf8_A Transcription factor ET 80.9 0.37 1.2E-05 40.6 0.0 56 37-92 11-68 (128)
42 2bni_A General control protein 79.5 2.3 7.8E-05 27.8 3.7 30 183-212 3-32 (34)
43 1pue_E Protein (transcription 79.5 0.88 3E-05 36.0 2.1 68 36-104 7-83 (89)
44 2yy0_A C-MYC-binding protein; 75.9 3.5 0.00012 29.4 4.3 34 188-221 19-52 (53)
45 2wt7_A Proto-oncogene protein 75.9 4.1 0.00014 29.7 4.8 30 183-212 32-61 (63)
46 2r2v_A GCN4 leucine zipper; co 73.3 6.9 0.00023 25.6 4.7 30 183-212 3-32 (34)
47 1jnm_A Proto-oncogene C-JUN; B 72.4 2 6.8E-05 31.2 2.3 30 182-211 30-59 (62)
48 3ra3_B P2F; coiled coil domain 70.9 4.5 0.00015 24.8 3.2 23 185-207 4-26 (28)
49 3w03_C DNA repair protein XRCC 70.5 3.9 0.00013 36.3 4.2 29 183-211 154-182 (184)
50 3he5_A Synzip1; heterodimeric 70.4 6.3 0.00022 26.9 4.2 16 183-198 12-27 (49)
51 1a93_B MAX protein, coiled coi 70.1 4.1 0.00014 26.7 3.1 24 183-206 9-32 (34)
52 2j5u_A MREC protein; bacterial 69.7 2.1 7E-05 39.4 2.3 29 183-211 21-49 (255)
53 2wt7_B Transcription factor MA 68.0 5.6 0.00019 31.4 4.2 29 185-213 59-87 (90)
54 2jee_A YIIU; FTSZ, septum, coi 65.7 13 0.00045 28.8 5.8 17 186-202 25-41 (81)
55 1fmh_A General control protein 64.6 11 0.00038 23.8 4.2 29 183-211 3-31 (33)
56 3s9g_A Protein hexim1; cyclin 62.4 5.5 0.00019 32.1 3.1 27 182-208 66-92 (104)
57 1uii_A Geminin; human, DNA rep 58.5 19 0.00066 28.0 5.5 35 183-217 41-75 (83)
58 3ra3_A P1C; coiled coil domain 54.6 15 0.00052 22.4 3.4 24 185-208 4-27 (28)
59 1nlw_A MAD protein, MAX dimeri 53.8 8.9 0.0003 29.3 2.9 30 183-212 49-78 (80)
60 2wuj_A Septum site-determining 50.9 12 0.00039 26.8 3.0 27 183-209 29-55 (57)
61 1use_A VAsp, vasodilator-stimu 50.8 42 0.0014 23.2 5.6 31 188-218 7-39 (45)
62 3m91_A Proteasome-associated A 50.6 28 0.00095 24.6 4.9 34 183-216 11-44 (51)
63 1t6f_A Geminin; coiled-coil, c 49.3 33 0.0011 22.6 4.7 31 185-215 4-34 (37)
64 1go4_E MAD1 (mitotic arrest de 48.4 26 0.00087 28.1 4.9 29 183-211 14-42 (100)
65 1nkp_A C-MYC, MYC proto-oncoge 48.3 14 0.00047 28.6 3.3 17 191-207 69-85 (88)
66 4dzn_A Coiled-coil peptide CC- 47.7 43 0.0015 21.1 4.8 23 189-211 3-25 (33)
67 2wt7_B Transcription factor MA 47.5 43 0.0015 26.3 6.0 36 183-218 50-85 (90)
68 1uii_A Geminin; human, DNA rep 46.5 44 0.0015 26.0 5.8 34 183-216 48-81 (83)
69 1gd2_E Transcription factor PA 46.4 32 0.0011 25.7 4.9 37 183-219 31-67 (70)
70 3i00_A HIP-I, huntingtin-inter 44.7 35 0.0012 28.1 5.3 32 188-219 15-46 (120)
71 3cue_D Transport protein parti 44.6 16 0.00056 32.3 3.6 61 32-93 88-157 (193)
72 1nkp_B MAX protein, MYC proto- 43.0 15 0.0005 27.8 2.6 26 184-209 50-75 (83)
73 2jee_A YIIU; FTSZ, septum, coi 41.5 40 0.0014 26.1 4.9 35 183-217 29-77 (81)
74 2w6b_A RHO guanine nucleotide 40.8 82 0.0028 22.6 6.0 34 183-216 12-48 (56)
75 1nkp_B MAX protein, MYC proto- 40.7 29 0.00099 26.1 4.0 34 186-219 45-78 (83)
76 1nlw_A MAD protein, MAX dimeri 39.5 36 0.0012 25.8 4.4 23 184-206 57-79 (80)
77 2xdj_A Uncharacterized protein 39.3 58 0.002 25.0 5.5 35 184-218 30-64 (83)
78 2dgc_A Protein (GCN4); basic d 39.0 18 0.00061 26.4 2.5 23 183-205 39-61 (63)
79 1dip_A Delta-sleep-inducing pe 38.9 21 0.00071 27.3 2.8 21 188-208 15-35 (78)
80 1a93_A Coiled coil, LZ, MYC pr 38.9 27 0.00093 22.8 3.0 23 185-207 11-33 (34)
81 2wvr_A Geminin; DNA replicatio 37.1 57 0.002 29.3 5.8 25 185-209 112-136 (209)
82 1sz7_A BET3 homolog, trafficki 37.0 29 0.001 30.9 4.0 62 32-94 85-154 (200)
83 1dh3_A Transcription factor CR 36.7 11 0.00038 26.8 1.0 22 183-204 31-52 (55)
84 1wlq_A Geminin; coiled-coil; 2 36.3 59 0.002 25.2 5.1 31 183-213 33-63 (83)
85 4etp_A Kinesin-like protein KA 34.6 56 0.0019 31.8 5.9 27 183-209 5-31 (403)
86 3m9b_A Proteasome-associated A 34.5 26 0.00089 32.5 3.3 43 183-225 56-98 (251)
87 1am9_A Srebp-1A, protein (ster 34.4 37 0.0012 25.7 3.7 27 183-209 52-78 (82)
88 1wlq_A Geminin; coiled-coil; 2 34.4 64 0.0022 25.0 5.0 33 184-216 41-73 (83)
89 1ik9_A DNA repair protein XRCC 33.8 58 0.002 29.1 5.4 32 184-215 135-166 (213)
90 3q4f_C DNA repair protein XRCC 33.6 29 0.001 30.7 3.3 24 182-205 162-185 (186)
91 1go4_E MAD1 (mitotic arrest de 33.2 39 0.0013 27.1 3.7 34 187-220 11-44 (100)
92 3w03_C DNA repair protein XRCC 32.8 69 0.0023 28.3 5.6 36 183-218 147-182 (184)
93 1gd2_E Transcription factor PA 32.2 37 0.0013 25.4 3.3 28 183-210 38-65 (70)
94 3he5_A Synzip1; heterodimeric 31.7 1.2E+02 0.0042 20.6 5.7 30 183-212 5-34 (49)
95 2w6a_A ARF GTPase-activating p 31.1 1.4E+02 0.0049 21.7 6.1 37 184-220 23-59 (63)
96 3a5t_A Transcription factor MA 30.4 0.41 1.4E-05 39.2 -8.5 34 185-218 69-102 (107)
97 1got_G GT-gamma; complex (GTP- 30.0 51 0.0017 24.8 3.7 35 189-223 18-56 (73)
98 2wg5_A General control protein 28.6 55 0.0019 26.1 4.0 28 182-209 8-35 (109)
99 1whv_A Poly(A)-specific ribonu 27.4 15 0.00053 29.5 0.5 42 48-89 42-88 (100)
100 2oa5_A Hypothetical protein BQ 27.3 36 0.0012 27.7 2.6 24 182-205 9-32 (110)
101 1deb_A APC protein, adenomatou 27.3 1.7E+02 0.0057 20.7 5.9 29 182-210 11-39 (54)
102 2w6b_A RHO guanine nucleotide 26.9 1.1E+02 0.0039 21.9 4.8 30 184-213 6-35 (56)
103 3v86_A De novo design helix; c 26.7 73 0.0025 19.2 3.2 23 185-207 4-26 (27)
104 2wuj_A Septum site-determining 26.4 30 0.001 24.6 1.8 21 183-203 36-56 (57)
105 4g2k_A General control protein 25.8 1.4E+02 0.0047 24.8 5.9 38 183-220 16-53 (125)
106 2wvr_A Geminin; DNA replicatio 24.7 1.2E+02 0.0042 27.2 5.8 35 183-217 117-151 (209)
107 3t97_C Nuclear pore glycoprote 24.6 1.3E+02 0.0046 21.9 5.1 42 182-223 13-54 (64)
108 1nkp_A C-MYC, MYC proto-oncoge 24.5 1.2E+02 0.0041 23.2 5.1 28 184-211 55-82 (88)
109 1t3j_A Mitofusin 1; coiled coi 24.3 1.7E+02 0.0059 23.1 6.0 31 183-213 49-79 (96)
110 3oja_A Leucine-rich immune mol 24.3 1.1E+02 0.0037 29.5 6.0 34 186-219 440-473 (487)
111 3e98_A GAF domain of unknown f 23.5 1.2E+02 0.0042 27.4 5.9 19 102-120 40-58 (252)
112 3hnw_A Uncharacterized protein 23.5 1E+02 0.0036 25.6 4.9 31 183-213 105-135 (138)
113 2xdj_A Uncharacterized protein 23.4 1.9E+02 0.0064 22.1 6.0 39 183-221 22-60 (83)
114 3m91_A Proteasome-associated A 22.8 2E+02 0.0068 20.1 6.2 33 182-214 17-49 (51)
115 4h22_A Leucine-rich repeat fli 22.7 1.3E+02 0.0045 24.1 5.1 33 183-215 39-71 (103)
116 3l4f_A RHO guanine nucleotide 21.9 2.4E+02 0.0081 20.6 5.9 38 184-221 10-50 (61)
117 2zxx_A Geminin; coiled-coil, c 21.1 1.6E+02 0.0055 22.5 5.1 28 183-210 29-56 (79)
118 3vmx_A Voltage-gated hydrogen 20.9 2.2E+02 0.0075 19.8 5.8 30 188-217 4-33 (48)
119 1rtm_1 Mannose-binding protein 20.7 1.1E+02 0.0036 24.4 4.4 25 186-210 2-26 (149)
120 2jn6_A Protein CGL2762, transp 20.3 4.9 0.00017 30.5 -3.8 26 184-209 62-87 (97)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=1.5e-39 Score=268.00 Aligned_cols=93 Identities=47% Similarity=0.863 Sum_probs=89.1
Q ss_pred CCchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCccccc----------CC
Q 020146 30 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV----------PD 99 (330)
Q Consensus 30 p~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~----------~d 99 (330)
.++||.|||+||+|++++++|+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+. ++
T Consensus 4 ~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~ 83 (106)
T 1hks_A 4 VPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRD 83 (106)
T ss_dssp CCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTS
T ss_pred cCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCC
Confidence 34799999999999999999999999999999999999999999999999999999999999999995 36
Q ss_pred ceEEEcCCcCCCcHhhHHhcccc
Q 020146 100 RWEFSNDCFRRGEQQLLREIQRR 122 (330)
Q Consensus 100 ~~eF~h~~F~Rg~~~lL~~IkRr 122 (330)
.|+|+|++|+||+|+||.+|+||
T Consensus 84 ~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 84 EIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TTEECCTTCCSSCTTSTTTCCCC
T ss_pred ceEEECcCccCcCHHHHhhCcCC
Confidence 79999999999999999999996
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=273.03 Aligned_cols=101 Identities=49% Similarity=0.875 Sum_probs=93.7
Q ss_pred cCCCCCCchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCccccc-------
Q 020146 25 SQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV------- 97 (330)
Q Consensus 25 ~~r~~p~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~------- 97 (330)
......++||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+||+||||+|||+||.
T Consensus 12 ~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~ 91 (125)
T 2ldu_A 12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGL 91 (125)
T ss_dssp CSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSS
T ss_pred ccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccc
Confidence 3444556899999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ----CCceEEEcCCcCCCcHhhHHhcccccCC
Q 020146 98 ----PDRWEFSNDCFRRGEQQLLREIQRRKIQ 125 (330)
Q Consensus 98 ----~d~~eF~h~~F~Rg~~~lL~~IkRrk~~ 125 (330)
++.|+|+|++|+||+++||.+|+||++.
T Consensus 92 ~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 92 VKPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp SSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred ccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 3679999999999999999999998764
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.97 E-value=4.6e-33 Score=228.32 Aligned_cols=77 Identities=45% Similarity=0.916 Sum_probs=74.3
Q ss_pred CchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCccccc-----------CC
Q 020146 31 TPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV-----------PD 99 (330)
Q Consensus 31 ~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~-----------~d 99 (330)
++||.|||.||+|+++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+. ++
T Consensus 13 p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~~~~ 92 (102)
T 3hts_B 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDS 92 (102)
T ss_dssp CHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------CCSC
T ss_pred CcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCCCcC
Confidence 4899999999999999999999999999999999999999999999999999999999999999998 57
Q ss_pred ceEEEcCC
Q 020146 100 RWEFSNDC 107 (330)
Q Consensus 100 ~~eF~h~~ 107 (330)
+|||+|++
T Consensus 93 ~wEF~n~~ 100 (102)
T 3hts_B 93 RWEFENER 100 (102)
T ss_dssp CEEEEECC
T ss_pred CeEecCCC
Confidence 89999986
No 4
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=93.05 E-value=0.21 Score=35.60 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=25.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
....|..++|.||+||..|++||..-...+.+
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lsk 35 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTK 35 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Confidence 36679999999999999999999764444433
No 5
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=91.50 E-value=0.078 Score=42.79 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=44.3
Q ss_pred hHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccC
Q 020146 33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYG 92 (330)
Q Consensus 33 Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YG 92 (330)
...=|.++|+|++..++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-
T Consensus 8 LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 8 LWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp SHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 34445677899999999999999999999999888773211 1113567888888887774
No 6
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=91.45 E-value=0.084 Score=43.43 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=49.5
Q ss_pred HHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccCc----ccccCCceEEE
Q 020146 37 TYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYGF----KKVVPDRWEFS 104 (330)
Q Consensus 37 Ly~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YGF----~Kv~~d~~eF~ 104 (330)
|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-= +||...+..|.
T Consensus 7 LleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~ 79 (110)
T 1awc_A 7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK 79 (110)
T ss_dssp HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence 5688999999999999999999999999888773221 11135678899998888753 34444455554
No 7
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=91.19 E-value=0.48 Score=34.74 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
...|..+.+.|..+|..|..++..|+..+..+-.+|..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999988888887754
No 8
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=90.72 E-value=0.073 Score=42.57 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=52.9
Q ss_pred hHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccC---c-ccccCCceEEEc
Q 020146 33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYG---F-KKVVPDRWEFSN 105 (330)
Q Consensus 33 Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YG---F-~Kv~~d~~eF~h 105 (330)
...=|.++|.|++..++|+|...+.-|.+.|+++.++--=. +-=..-||...-|-|..|- + +||...+..|..
T Consensus 7 Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F 84 (93)
T 1bc8_C 7 LWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 84 (93)
T ss_dssp HHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred HHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence 44457789999999999999988889999999888873211 1124578999999998884 2 444445555553
No 9
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=90.41 E-value=0.09 Score=42.69 Aligned_cols=73 Identities=22% Similarity=0.298 Sum_probs=52.5
Q ss_pred hHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccCc----ccccCCceEEEc
Q 020146 33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYGF----KKVVPDRWEFSN 105 (330)
Q Consensus 33 Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YGF----~Kv~~d~~eF~h 105 (330)
...=|.++|+|+++.++|+|...+.-|.+.|+++.++--=. +-=..-||.-+.|-|..|-= +||...+..|..
T Consensus 10 LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYkF 87 (102)
T 2ypr_A 10 LWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRF 87 (102)
T ss_dssp HHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEEE
T ss_pred HHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence 44446788999999999999998999999999888873111 11146789999999988742 455555555543
No 10
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=90.41 E-value=0.12 Score=42.21 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=54.0
Q ss_pred chHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccC---c-ccccCCceEEE
Q 020146 32 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYG---F-KKVVPDRWEFS 104 (330)
Q Consensus 32 ~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YG---F-~Kv~~d~~eF~ 104 (330)
....=|.++|+|+++.++|+|...+..|.+.|+++.++--=. +-=..-+|..+.|-|..|- . +||...+..|.
T Consensus 13 ~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYk 90 (106)
T 4avp_A 13 QLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK 90 (106)
T ss_dssp CHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEE
T ss_pred eHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEE
Confidence 455567789999999999999999989999999888873211 1113578999999998874 3 56665565554
No 11
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=88.47 E-value=0.5 Score=37.21 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
++..+.+.|.+||..|+.++.+|++.+..+-.+|..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666666666665554
No 12
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=87.86 E-value=0.14 Score=44.07 Aligned_cols=78 Identities=26% Similarity=0.354 Sum_probs=57.1
Q ss_pred CCCCchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccCcc----cccCCceE
Q 020146 28 SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYGFK----KVVPDRWE 102 (330)
Q Consensus 28 ~~p~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YGF~----Kv~~d~~e 102 (330)
+.+.....=|.+||+|++..++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-=+ ||...+..
T Consensus 37 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv 116 (146)
T 1gvj_A 37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV 116 (146)
T ss_dssp CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSE
T ss_pred CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 3444566777889999999999999999999999999988873211 111356899999999988543 55555556
Q ss_pred EEc
Q 020146 103 FSN 105 (330)
Q Consensus 103 F~h 105 (330)
|..
T Consensus 117 Y~F 119 (146)
T 1gvj_A 117 YRF 119 (146)
T ss_dssp EEE
T ss_pred EEe
Confidence 553
No 13
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=87.70 E-value=0.85 Score=29.70 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
..|.+.+|.|-.+|..|..|+.++|.+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4699999999999999999999999875
No 14
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=87.52 E-value=0.46 Score=38.57 Aligned_cols=72 Identities=10% Similarity=0.185 Sum_probs=48.8
Q ss_pred hHHHHHHHhcCCC-CCCceEEcCC-CCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccC----cccccCCceEEE
Q 020146 33 FLTKTYQLVDDQA-IDDVISWNKD-GTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYG----FKKVVPDRWEFS 104 (330)
Q Consensus 33 Fl~KLy~mv~d~~-~~~iI~W~~~-G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YG----F~Kv~~d~~eF~ 104 (330)
...=|.++|.|++ ..++|+|... ...|.|.|+++.++--=. +-=...||..+.|-|..|- .+||...+..|.
T Consensus 7 LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~ 85 (103)
T 3jtg_A 7 LWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 85 (103)
T ss_dssp HHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred HHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence 4444668889987 5689999984 458999999888773111 1114678999999998873 244444555554
No 15
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.20 E-value=0.37 Score=40.05 Aligned_cols=72 Identities=22% Similarity=0.408 Sum_probs=51.8
Q ss_pred hHHHHHHHhcCCCCCCceEEcC-CCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhccc---Cc-ccccCCceEEE
Q 020146 33 FLTKTYQLVDDQAIDDVISWNK-DGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTY---GF-KKVVPDRWEFS 104 (330)
Q Consensus 33 Fl~KLy~mv~d~~~~~iI~W~~-~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~Y---GF-~Kv~~d~~eF~ 104 (330)
.-.=|.+||.|+++.++|+|.. ++.-|.+.|+++.++.-=. +-=..-||...-|-|..| |+ +|+...+..|.
T Consensus 11 LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~vY~ 88 (118)
T 2dao_A 11 LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFR 88 (118)
T ss_dssp HHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSEEE
T ss_pred HHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEEEE
Confidence 4555778899999999999987 4568999999888773211 222457899999999988 33 45555555554
No 16
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=86.42 E-value=1.3 Score=34.81 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=29.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
....|..||+.|+.++..|..|+..|+.++-+|-.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 35779999999999999999999999998776655
No 17
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=85.53 E-value=2 Score=31.52 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
...|..+.+.|..+|..|..++..++..+..+-.+|.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888888888888887777776666654
No 18
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=85.52 E-value=0.48 Score=41.69 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=55.8
Q ss_pred CCCchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccCcc----cccCCceEE
Q 020146 29 MPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYGFK----KVVPDRWEF 103 (330)
Q Consensus 29 ~p~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YGF~----Kv~~d~~eF 103 (330)
.+.....=|.+||+|++..++|+|...+.-|.+.|+++.++.-=. |-=..-||...-|-|..|-=+ ||...+..|
T Consensus 63 g~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY 142 (171)
T 2nny_A 63 GPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY 142 (171)
T ss_dssp SSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTEE
T ss_pred CceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEEE
Confidence 344566667889999999999999999999999999988873211 111356899999999988644 555455555
Q ss_pred E
Q 020146 104 S 104 (330)
Q Consensus 104 ~ 104 (330)
.
T Consensus 143 ~ 143 (171)
T 2nny_A 143 R 143 (171)
T ss_dssp E
T ss_pred E
Confidence 4
No 19
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.44 E-value=0.48 Score=36.57 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
++....+.|.+||..|..++.+|++.+..+-.
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444433
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=85.41 E-value=1.6 Score=31.23 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
...|..||+.|+.++..|..++..++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 21
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=85.29 E-value=1.9 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
+..|.+.+|.|..+|..|..|+.++|.+...
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4679999999999999999999999988653
No 22
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=84.99 E-value=0.71 Score=37.73 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCCchHHHHHHHhcCCC-CCCceEEcC-CCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccC
Q 020146 29 MPTPFLTKTYQLVDDQA-IDDVISWNK-DGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYG 92 (330)
Q Consensus 29 ~p~~Fl~KLy~mv~d~~-~~~iI~W~~-~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YG 92 (330)
.+.....=|.+||.|++ ..++|+|.. +..-|.+.|+++.++.-=. +-=..-||...-|-|..|-
T Consensus 7 g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY 73 (107)
T 1wwx_A 7 GSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY 73 (107)
T ss_dssp SSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 33456667788998886 568999987 4678999999888873211 1113578999999988874
No 23
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.37 E-value=2.2 Score=30.77 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLM 218 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl 218 (330)
...|..+.+.|..+|..|..++..|+..+..+-++|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777777777777777777777777666665554
No 24
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.19 E-value=1.7 Score=28.28 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+..|.+.+|.|-.+|..|..|+.++|.+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 356899999999999999999999998764
No 25
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.89 E-value=1.7 Score=28.44 Aligned_cols=29 Identities=10% Similarity=0.311 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
+..|.+.+|.|-.+|..|..|+.++|.+.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45799999999999999999999999875
No 26
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=83.24 E-value=4.1 Score=28.19 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
.+-|...+.+|+++|-+|.+.-..+.+++-++..-+.+
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiar 42 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIAR 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHH
Confidence 45688999999999999988888888877777665543
No 27
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=82.87 E-value=2 Score=28.04 Aligned_cols=30 Identities=7% Similarity=0.108 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+..|.+.+|.|-.+|..|..|+.++|.+..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 467999999999999999999999998764
No 28
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=82.84 E-value=1.1 Score=32.51 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
..+|..+++.|..+|..|..++..++..+..|-++|.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888777766655543
No 29
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=82.75 E-value=0.24 Score=42.95 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=52.5
Q ss_pred hHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccCc----ccccCCceEEEc
Q 020146 33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYGF----KKVVPDRWEFSN 105 (330)
Q Consensus 33 Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YGF----~Kv~~d~~eF~h 105 (330)
...=|.+||.|++..++|+|...+.-|.+.|+++.++.-=. |-=..-||...-|-|..|-= +||...+..|..
T Consensus 8 LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF 85 (157)
T 1hbx_G 8 LWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 85 (157)
T ss_dssp HHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred HHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence 34446678999999999999988889999999888873211 12245789999999998852 344445555553
No 30
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=82.36 E-value=1.2 Score=34.30 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=27.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
....|..||..|+.++..|..|+..|+.++-
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999999999997653
No 31
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=82.07 E-value=2.3 Score=26.97 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
.+.|.+|+..|++|...|.-|++.+++-
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5678899999999999999998888764
No 32
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=81.98 E-value=2.9 Score=27.65 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+..|.+++|.|-.+|..|..|+.++|.+..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 457999999999999999999999998764
No 33
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=81.84 E-value=2 Score=31.07 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
...|..+|..|+.+...|..|+.+|++++
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999999998764
No 34
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=81.81 E-value=2.8 Score=27.21 Aligned_cols=30 Identities=7% Similarity=0.109 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+..|.+.+|.|-.+|..|..|+.+++.+..
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 356999999999999999999999998763
No 35
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=81.36 E-value=1.4 Score=32.44 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+.+|..+++.|..+|..|..|+.+|++++.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999999987653
No 36
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.69 E-value=2 Score=31.48 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=28.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
...+|..+|..|+.+...|..|+..|++++-+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999988754
No 37
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=80.48 E-value=3.2 Score=27.12 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+..|.+.+|.|-.+|..|..|+.+++.+..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 457999999999999999999999998764
No 38
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=80.24 E-value=1 Score=32.29 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+.+|..+++.|..||..|..++..+++.|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567999999999999999999999987653
No 39
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=79.87 E-value=3.5 Score=26.91 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+..|.+.+|.|-.+|..|..|+.++|.+..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 467999999999999999999999998753
No 40
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=79.82 E-value=0.83 Score=36.69 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=47.7
Q ss_pred CCchHHHHHHHhcCCC-CCCceEEcC-CCCeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccCcc
Q 020146 30 PTPFLTKTYQLVDDQA-IDDVISWNK-DGTTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYGFK 94 (330)
Q Consensus 30 p~~Fl~KLy~mv~d~~-~~~iI~W~~-~G~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YGF~ 94 (330)
+.....=|.+||+||+ ..++|+|.+ ++.-|.+.|+++.++.-=. +-=..-||...-|-|..|--+
T Consensus 10 ~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~ 77 (97)
T 1yo5_C 10 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 77 (97)
T ss_dssp CCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred eeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence 3346666788999986 578999984 5778999999888873211 222367899999999998643
No 41
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=80.90 E-value=0.37 Score=40.59 Aligned_cols=56 Identities=23% Similarity=0.420 Sum_probs=37.8
Q ss_pred HHHHhcCCCCCCceEEcCCC-CeEEEeCCchhhhhhcc-cccCCCchhhHHhhhcccC
Q 020146 37 TYQLVDDQAIDDVISWNKDG-TTFVVWNPTIFARDLLP-RYFKHNNFSSFVRQLNTYG 92 (330)
Q Consensus 37 Ly~mv~d~~~~~iI~W~~~G-~sFvI~d~~~F~~~VLP-k~Fkh~nfsSFvRQLN~YG 92 (330)
|.+||.|+++.++|+|...+ .-|.+.|+++.++.-=. +-=..-||...-|-|..|-
T Consensus 11 LleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY 68 (128)
T 2lf8_A 11 VYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYY 68 (128)
Confidence 56788999999999998854 58999999877762111 1112345666666666664
No 42
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=79.47 E-value=2.3 Score=27.83 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+..|.+.+|.|-.+|..|..|++++|.+..
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 457999999999999999999999998754
No 43
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=79.46 E-value=0.88 Score=35.97 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=45.8
Q ss_pred HHHHHhcCCCCCCceEEcCCC-CeEEEe--CCchhhhhhcc-c-ccCCCchhhHHhhhcccC----cccccCCceEEE
Q 020146 36 KTYQLVDDQAIDDVISWNKDG-TTFVVW--NPTIFARDLLP-R-YFKHNNFSSFVRQLNTYG----FKKVVPDRWEFS 104 (330)
Q Consensus 36 KLy~mv~d~~~~~iI~W~~~G-~sFvI~--d~~~F~~~VLP-k-~Fkh~nfsSFvRQLN~YG----F~Kv~~d~~eF~ 104 (330)
=|.++|+|++..++|+|...+ ..|.+. |+++.++--=. + -=..-||...-|-|..|- -+||. .+..|.
T Consensus 7 FL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r~vY~ 83 (89)
T 1pue_E 7 FLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KKLTYQ 83 (89)
T ss_dssp HHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-STTEEE
T ss_pred HHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ceEEEe
Confidence 367889999999999998643 568775 67777773211 1 113678999999998884 24444 454444
No 44
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.91 E-value=3.5 Score=29.36 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020146 188 EENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNY 221 (330)
Q Consensus 188 eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~ 221 (330)
.+++.|++||..|++++..+++.+..+-.-|..|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999888876655443
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=75.88 E-value=4.1 Score=29.67 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
...|..+|+.|+.+...|..|+.+++.++.
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999998754
No 46
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=73.35 E-value=6.9 Score=25.58 Aligned_cols=30 Identities=7% Similarity=0.152 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+..|.+.+|.|-.++..|..|+.+++++..
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 467899999999999999999999998753
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.36 E-value=2 Score=31.20 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
....|..+|+.|+.+...|..|+..|++++
T Consensus 30 ~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 30 KVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999988764
No 48
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=70.94 E-value=4.5 Score=24.79 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEM 207 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~m 207 (330)
.|.+.|.+|++|...|.-|++.+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 46666777777777766666544
No 49
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=70.48 E-value=3.9 Score=36.30 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
..+|.++|++|.+||..|.+|..++.+..
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777777777766655443
No 50
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=70.44 E-value=6.3 Score=26.95 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENA 198 (330)
Q Consensus 183 ~~~L~eENerLrrEN~ 198 (330)
.+.|..|||.|++.|-
T Consensus 12 vaslenenetlkkknl 27 (49)
T 3he5_A 12 VASLENENETLKKKNL 27 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHhcc
Confidence 3456666666666654
No 51
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=70.12 E-value=4.1 Score=26.73 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAE 206 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~ 206 (330)
..+...+++.||++|..|..++..
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHh
Confidence 456889999999999999888754
No 52
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=69.72 E-value=2.1 Score=39.43 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
+..|.+||++|++||..|++++.+++.+-
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~ 49 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLK 49 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688999999999999998888877764
No 53
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=68.03 E-value=5.6 Score=31.42 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
.|..|.+.|++|+..+.+|+..+|+.|+.
T Consensus 59 ~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 59 QLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555544
No 54
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.74 E-value=13 Score=28.76 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNK 202 (330)
Q Consensus 186 L~eENerLrrEN~~L~q 202 (330)
|..|++.||.+|..|.+
T Consensus 25 LqmEieELKekN~~L~~ 41 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555333
No 55
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=64.58 E-value=11 Score=23.82 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
.+.|..|+.+-.-||-.|.||++++...|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 46788999999999999999999988766
No 56
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=62.36 E-value=5.5 Score=32.09 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=18.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMK 208 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mk 208 (330)
.+.+|..|+++|+.||..|++|-..-+
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777777777777777755443
No 57
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=58.45 E-value=19 Score=27.97 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSL 217 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~f 217 (330)
+.+-.+||+.|..++..|..|+..+|+....+-.+
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455778888777777777777777765555444
No 58
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.65 E-value=15 Score=22.43 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMK 208 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mk 208 (330)
.|.-||+.|.+....|.|+++.++
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 466677777777777777666655
No 59
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.80 E-value=8.9 Score=29.27 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
+..|.+++.+|..|+..|+.|...|++.++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666666666665555555555554443
No 60
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=50.94 E-value=12 Score=26.81 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
+..+.++.+.|.+||..|..++..++.
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566888999999999999999988765
No 61
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=50.79 E-value=42 Score=23.23 Aligned_cols=31 Identities=10% Similarity=0.326 Sum_probs=20.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHH
Q 020146 188 EENDKLRKENA-QLNKQVAEMKN-LCNNIFSLM 218 (330)
Q Consensus 188 eENerLrrEN~-~L~qEL~~mkk-l~n~Il~fl 218 (330)
.+.++||+|.- .+++||.+||+ +++-|.+.|
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El 39 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEIIEAFVQEL 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888864 47888888886 344444444
No 62
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.56 E-value=28 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
..+|..++..|-..|..|..-|...+..+.+|-.
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655555554444444433
No 63
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=49.33 E-value=33 Score=22.63 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMKNLCNNIF 215 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mkkl~n~Il 215 (330)
+...||++|-++...-..|++++|+.-.++.
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4567899999999988889999887665543
No 64
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.41 E-value=26 Score=28.14 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
+..|.++++.|++||..|++++..+.-.+
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888877766443
No 65
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=48.31 E-value=14 Score=28.62 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020146 191 DKLRKENAQLNKQVAEM 207 (330)
Q Consensus 191 erLrrEN~~L~qEL~~m 207 (330)
+.|+++|..|.++|.+|
T Consensus 69 ~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 69 DLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 66
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=47.68 E-value=43 Score=21.12 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020146 189 ENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 189 ENerLrrEN~~L~qEL~~mkkl~ 211 (330)
|+..|++|...|..|++.++=.+
T Consensus 3 eiaalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888777443
No 67
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=47.53 E-value=43 Score=26.28 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLM 218 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl 218 (330)
...|..++..|+.|...|.+|+.++++..+.+-+-+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999998888777665543
No 68
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=46.45 E-value=44 Score=25.97 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
...|.++++.|..|+..|.+++..++.+.+.+-+
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999999999998877644
No 69
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.38 E-value=32 Score=25.70 Aligned_cols=37 Identities=3% Similarity=0.049 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
+.+|..++..|..++..|..|...|+..+..|-.-+.
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667766666666666666666555554443
No 70
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.71 E-value=35 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 188 EENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 188 eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
..++.|++|+..|+.||..++.-+..++.-|.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~ 46 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLK 46 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665555444444443
No 71
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=44.57 E-value=16 Score=32.28 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=46.6
Q ss_pred chHH-HHHHHhcCCCCCCceEEcCCCCeEEE-eCCchhhhhh-ccccc-CCCchhhHHhh-----hcccCc
Q 020146 32 PFLT-KTYQLVDDQAIDDVISWNKDGTTFVV-WNPTIFARDL-LPRYF-KHNNFSSFVRQ-----LNTYGF 93 (330)
Q Consensus 32 ~Fl~-KLy~mv~d~~~~~iI~W~~~G~sFvI-~d~~~F~~~V-LPk~F-kh~nfsSFvRQ-----LN~YGF 93 (330)
.|+. .+|.++=.-.. +...|+++++.|+| .|..-|...| ||+.. ..-+|++|+.- |.+-||
T Consensus 88 ~fI~k~~Wk~lfgk~~-d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 88 EVLSKCAFKIFLNITP-NITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHSSCCC-CCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 5774 48888877654 46799999999999 7777666555 78776 66789999875 677888
No 72
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.03 E-value=15 Score=27.78 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
..|.++++.|..|...|.++...++.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33454444444444444444444443
No 73
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.51 E-value=40 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=20.0
Q ss_pred hhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDK--------------LRKENAQLNKQVAEMKNLCNNIFSL 217 (330)
Q Consensus 183 ~~~L~eENer--------------LrrEN~~L~qEL~~mkkl~n~Il~f 217 (330)
..+|.++|.. |.+||..|.+|+..-+.-+..||.-
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666 5555555666665555555555544
No 74
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.81 E-value=82 Score=22.63 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAE---MKNLCNNIFS 216 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~---mkkl~n~Il~ 216 (330)
.-+|.+|+..|++||..|.+-|.. .|+-.+.|+.
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888888766654 3334555544
No 75
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.70 E-value=29 Score=26.07 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
-.+-+..|..++..|..|+..+++....+-..|.
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777666666555544
No 76
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=39.55 E-value=36 Score=25.76 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAE 206 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~ 206 (330)
..|..|++.|++++..|.++|.+
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666666666555543
No 77
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.32 E-value=58 Score=25.02 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLM 218 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl 218 (330)
..|..|+.+||-.+..+..++.+|++...++..-|
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555556666666655555554443
No 78
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.99 E-value=18 Score=26.37 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVA 205 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~ 205 (330)
...|..+|..|+.+...|+++|.
T Consensus 39 v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 39 VEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777776666654
No 79
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=38.87 E-value=21 Score=27.28 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020146 188 EENDKLRKENAQLNKQVAEMK 208 (330)
Q Consensus 188 eENerLrrEN~~L~qEL~~mk 208 (330)
+|+|.||.....|.....++.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE 35 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLE 35 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 80
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=38.85 E-value=27 Score=22.78 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEM 207 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~m 207 (330)
.|..|-|.|++.+..|.+.|.++
T Consensus 11 kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 11 KLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 47777788888888887777664
No 81
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=37.12 E-value=57 Score=29.30 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
+-.+||+.|..++..|..|++.||+
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~Lke 136 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKK 136 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666555555555444443
No 82
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=36.98 E-value=29 Score=30.90 Aligned_cols=62 Identities=11% Similarity=0.254 Sum_probs=45.6
Q ss_pred chHH-HHHHHhcCCCCCCceEEcCCCCeEEE-eCCchhhhhh-cccccCCCchhhHHhh-----hcccCcc
Q 020146 32 PFLT-KTYQLVDDQAIDDVISWNKDGTTFVV-WNPTIFARDL-LPRYFKHNNFSSFVRQ-----LNTYGFK 94 (330)
Q Consensus 32 ~Fl~-KLy~mv~d~~~~~iI~W~~~G~sFvI-~d~~~F~~~V-LPk~Fkh~nfsSFvRQ-----LN~YGF~ 94 (330)
.|+. .+|.++=.-.. +...|+++++.|+| .|..-+...| ||+-.+.-+|+.|+.- |.+-||.
T Consensus 85 ~fI~k~~Wk~lFgk~a-d~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 85 DVIAKVAFKMYLGITP-SITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHTHHHHHHSCCC-EEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 4664 47777765443 57899999999999 7776555544 7876677789999865 6778887
No 83
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=36.71 E-value=11 Score=26.77 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQV 204 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL 204 (330)
+..|..||..|+.++..|.+++
T Consensus 31 v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666665543
No 84
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=36.30 E-value=59 Score=25.22 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
+.+-.+||+.|.++...+..|++.+|+....
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888777777777776665433
No 85
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.55 E-value=56 Score=31.76 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
+.+|.++++.|+++...|.+++.+++.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~ 31 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTEL 31 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444433
No 86
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.47 E-value=26 Score=32.45 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTRGG 225 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~~~~ 225 (330)
+.+|..+++.|...|..|..+|..+++.+..+-.-|..+..+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4466777777766666666666666666666666666555553
No 87
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=34.38 E-value=37 Score=25.69 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
+..|..+++.|..|+..|..++.+.+.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455777777777777777776666543
No 88
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=34.36 E-value=64 Score=25.02 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFS 216 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~ 216 (330)
..|.++++.+..|...|.+|..+++.+.+..-+
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~ 73 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888888888888888887666444
No 89
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=33.76 E-value=58 Score=29.14 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIF 215 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il 215 (330)
..+.++|..|..+|..|.++..+++..+++++
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666655444443
No 90
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=33.58 E-value=29 Score=30.68 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=19.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVA 205 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~ 205 (330)
..++|+.+|+.|.+||..|.+|..
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357788999999999998888753
No 91
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.19 E-value=39 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 187 VEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 187 ~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
.+++..|+++...|..|-.+|++..+.+=.-|-+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888877776555543
No 92
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=32.76 E-value=69 Score=28.25 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLM 218 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl 218 (330)
+.-+.+.+..|+.+|..|.+|..+|++--|+++.-|
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445889999999999999999999999999988754
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.25 E-value=37 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
+..|..+++.|..||..|+.++..|+..
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666665543
No 94
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.66 E-value=1.2e+02 Score=20.56 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCN 212 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n 212 (330)
.+.|..|+..|..||..|...--+-+.++-
T Consensus 5 vaqlenevaslenenetlkkknlhkkdlia 34 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIA 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHH
Confidence 567889999999999999887766665543
No 95
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=31.14 E-value=1.4e+02 Score=21.74 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
+.-...+..|-+=|+.|.+||..|++.++.+-.--++
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 3445667888888889999999988888777655443
No 96
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=30.37 E-value=0.41 Score=39.16 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLM 218 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl 218 (330)
.|..+.+.|+.||..|..|+..+|..|+.+..|-
T Consensus 69 ~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a 102 (107)
T 3a5t_A 69 ELQQEVEKLASENASMKLELDALRSKYEALQNFA 102 (107)
T ss_dssp TTSSTTTTTTSTTSHHHHTTTSSSSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888763
No 97
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=30.05 E-value=51 Score=24.80 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcC
Q 020146 189 ENDKLRKENAQLNKQVAE----MKNLCNNIFSLMSNYTR 223 (330)
Q Consensus 189 ENerLrrEN~~L~qEL~~----mkkl~n~Il~fl~~~~~ 223 (330)
+.+.||+++..|+.|+.. .-+-+..|+.|...|..
T Consensus 18 ~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~~~ 56 (73)
T 1got_G 18 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSG 56 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCC
Confidence 446677777777777665 55668888888776654
No 98
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=28.59 E-value=55 Score=26.06 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
....|..+...|+++...|+.|+.+++.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567888888888888888888888775
No 99
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=27.45 E-value=15 Score=29.46 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=33.3
Q ss_pred CceEEcCCCCeEEEeCCchhhhhhccc-----ccCCCchhhHHhhhc
Q 020146 48 DVISWNKDGTTFVVWNPTIFARDLLPR-----YFKHNNFSSFVRQLN 89 (330)
Q Consensus 48 ~iI~W~~~G~sFvI~d~~~F~~~VLPk-----~Fkh~nfsSFvRQLN 89 (330)
=.|+|-+|-.+|||....+-++++|-. -|+-..|..|.-.|+
T Consensus 42 v~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ty~e~~~~l~ 88 (100)
T 1whv_A 42 IQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKQ 88 (100)
T ss_dssp CCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEEEHHHHHHHHC
T ss_pred EEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEhHHhHHHHh
Confidence 358999999999999999999888763 366667777766654
No 100
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=27.34 E-value=36 Score=27.73 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=21.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVA 205 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~ 205 (330)
...+|..|..+|+-||..|++.+.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999886
No 101
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.30 E-value=1.7e+02 Score=20.74 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
+...|..||..||||-..=...|.++...
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 35679999999999977766666665443
No 102
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.91 E-value=1.1e+02 Score=21.90 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
..|.+-+-.||.+...|.+|..+|++..+.
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888888999999988888886543
No 103
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=26.72 E-value=73 Score=19.24 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 020146 185 EMVEENDKLRKENAQLNKQVAEM 207 (330)
Q Consensus 185 ~L~eENerLrrEN~~L~qEL~~m 207 (330)
.|.+|+-.|+-|...|..|+..+
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 35666666666666666665443
No 104
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.42 E-value=30 Score=24.62 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQ 203 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qE 203 (330)
+..|..||+.|+.++..|..+
T Consensus 36 ~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 36 YEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666666655544
No 105
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=25.76 E-value=1.4e+02 Score=24.77 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSN 220 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~ 220 (330)
+..+.+.+|.+--.+-.+..|++++|+++.+|..-|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~ 53 (125)
T 4g2k_A 16 MKQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRR 53 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 56788889988888999999999999998888776653
No 106
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.67 E-value=1.2e+02 Score=27.17 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSL 217 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~f 217 (330)
...|.++++.|..|+..|++|+..++.+.+.+-++
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~l 151 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM 151 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999886665544
No 107
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.56 E-value=1.3e+02 Score=21.91 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=36.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTR 223 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~~~ 223 (330)
.+..|..+..+.+++...|-++|.-.....+.|=.+|..|=.
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~ 54 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEE 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999988888888888777654
No 108
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.55 E-value=1.2e+02 Score=23.18 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKNLC 211 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkkl~ 211 (330)
..|.+++.+|..+...|.++-.+|++.+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555554554444444433
No 109
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.31 E-value=1.7e+02 Score=23.11 Aligned_cols=31 Identities=35% Similarity=0.291 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
..+|.+|+.+|.+|...|..=..+.|.+-|+
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnK 79 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRNK 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4568888888888888776555555554443
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.26 E-value=1.1e+02 Score=29.53 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMS 219 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~ 219 (330)
+.+++++|++|+..|..++..+...+.+..+-++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 440 YQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 4455555555666665555555555544444443
No 111
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=23.55 E-value=1.2e+02 Score=27.36 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEcCCcCCCcHhhHHhcc
Q 020146 102 EFSNDCFRRGEQQLLREIQ 120 (330)
Q Consensus 102 eF~h~~F~Rg~~~lL~~Ik 120 (330)
-=.||.|--.+++||..|+
T Consensus 40 L~~~PdFf~~~~~Ll~~L~ 58 (252)
T 3e98_A 40 LSQHPEFFVEHDELIPELR 58 (252)
T ss_dssp -------------------
T ss_pred HHhCCHHHhhCHHHHHhCC
Confidence 3459999999999988776
No 112
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.52 E-value=1e+02 Score=25.60 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNN 213 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~ 213 (330)
...+..+++.|++++..|..++.++....+.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 113
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.38 E-value=1.9e+02 Score=22.09 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNY 221 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il~fl~~~ 221 (330)
..+|..+++.|+.|+..|+-.+..+...++.+..-...+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888888888888887766553
No 114
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.84 E-value=2e+02 Score=20.11 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=28.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNI 214 (330)
Q Consensus 182 ~~~~L~eENerLrrEN~~L~qEL~~mkkl~n~I 214 (330)
....|...|++|-......+.||..|+..++++
T Consensus 17 ~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 17 RIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999988875
No 115
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.67 E-value=1.3e+02 Score=24.13 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNLCNNIF 215 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl~n~Il 215 (330)
+.++.+.+..|+||+....+++.++|..+..+-
T Consensus 39 LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~ 71 (103)
T 4h22_A 39 LLELEEQLAESRRQYEEKNKEFEREKHAHSILQ 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888776643
No 116
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.88 E-value=2.4e+02 Score=20.61 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q 020146 184 AEMVEENDKLRKENAQLNKQVA---EMKNLCNNIFSLMSNY 221 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~---~mkkl~n~Il~fl~~~ 221 (330)
-+|..|...|++|+..+.+=+. ++++..++++--+...
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~ 50 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3578888888888887765444 4555666666554443
No 117
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.12 E-value=1.6e+02 Score=22.51 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 183 CAEMVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 183 ~~~L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
+.+-.+||+.|-++...+..|+..||..
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888777777777764
No 118
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.94 E-value=2.2e+02 Score=19.85 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 188 EENDKLRKENAQLNKQVAEMKNLCNNIFSL 217 (330)
Q Consensus 188 eENerLrrEN~~L~qEL~~mkkl~n~Il~f 217 (330)
.++.+||.=|..|.+.+.+++..|.+.-+-
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQE 33 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQE 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 445666666666766666666666555444
No 119
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=20.74 E-value=1.1e+02 Score=24.38 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 186 MVEENDKLRKENAQLNKQVAEMKNL 210 (330)
Q Consensus 186 L~eENerLrrEN~~L~qEL~~mkkl 210 (330)
|.+++..|..+...|.++|.++++.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5666777777777777777766653
No 120
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=20.26 E-value=4.9 Score=30.48 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020146 184 AEMVEENDKLRKENAQLNKQVAEMKN 209 (330)
Q Consensus 184 ~~L~eENerLrrEN~~L~qEL~~mkk 209 (330)
....+|+++|++||..|+.|+.-+++
T Consensus 62 ~~~~~ei~~L~~e~~~L~~e~~~Lkk 87 (97)
T 2jn6_A 62 VSEAEQIRQLKKENALQRARTRHPAE 87 (97)
T ss_dssp HHTHHHHHHHHHCGGGGGGTTSCCCG
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999999888888776654
Done!