Query 020148
Match_columns 330
No_of_seqs 215 out of 1589
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 12:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 100.0 1.6E-46 5.6E-51 351.3 20.5 226 42-316 25-277 (345)
2 1fkm_A Protein (GYP1P), ORF YO 100.0 2.7E-46 9.3E-51 355.0 22.0 220 43-310 8-255 (396)
3 2qq8_A TBC1 domain family memb 100.0 5.1E-45 1.7E-49 339.4 18.1 228 43-310 21-252 (334)
4 3qye_A TBC1 domain family memb 100.0 3.2E-45 1.1E-49 340.8 7.5 217 42-316 29-256 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 3.3E-44 1.1E-48 331.0 11.7 208 43-316 5-222 (310)
6 4hl4_A TBC1 domain family memb 100.0 6.5E-41 2.2E-45 306.3 11.5 210 44-320 21-240 (292)
7 3qwl_A TBC1 domain family memb 100.0 1.1E-33 3.9E-38 256.9 14.9 197 45-318 28-237 (294)
8 1dxs_A P53-like transcription 25.2 59 0.002 22.5 3.0 24 62-85 41-64 (80)
9 3i5g_C Myosin catalytic light 24.5 77 0.0026 24.4 4.2 19 53-71 99-117 (159)
10 2js3_A Uncharacterized protein 22.1 26 0.0009 24.2 0.7 11 209-219 17-27 (96)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.6e-46 Score=351.29 Aligned_cols=226 Identities=23% Similarity=0.469 Sum_probs=194.6
Q ss_pred CHHHHHHhhccCCCcCHHHHHHHHHhCCCCCCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 020148 42 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (330)
Q Consensus 42 ~~~~W~~~l~~~~~i~~~kll~~~~~~Gip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 121 (330)
..++|.+++++. .+|.++ ++.++++|||+.+|+.||++|+|++|.+.+ +|......++..|.++++++.....
T Consensus 25 r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~--- 97 (345)
T 2qfz_A 25 RLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRKQKEYFAFIEHYYDSRN--- 97 (345)
T ss_dssp HHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBGG--GHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence 457999999864 578888 666778999999999999999999987664 5567778889999999988632100
Q ss_pred CCccccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCChhhHHHHHHHHHHH
Q 020148 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIY 201 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y 201 (330)
+ + ...+..+||++||.||+|+ ++|+.+.+++.|+|||.+|
T Consensus 98 -------------------~----------------~----~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~y 137 (345)
T 2qfz_A 98 -------------------D----------------E----VHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIW 137 (345)
T ss_dssp ------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHH
T ss_pred -------------------c----------------c----chHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHH
Confidence 0 0 0015678999999999999 9999998999999999999
Q ss_pred HHhcCCCCccCChhHHHHHHHHhhc------------------------chhHHHHHHHHHHHHHHhhhcCCCChhhHHH
Q 020148 202 SWVDNDIGYVQGMNDICSPMIVLLE------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQS 257 (330)
Q Consensus 202 ~~~~~~igY~QGm~~i~a~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~ 257 (330)
+.+||++|||||||+|||+|++++. +|++|||||+++|++++++|. .+++|+..
T Consensus 138 a~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~--~~~~~i~~ 215 (345)
T 2qfz_A 138 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT--FAQPGIQM 215 (345)
T ss_dssp HHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS--TTCHHHHH
T ss_pred HHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc--cCcHHHHH
Confidence 9999999999999999999998874 399999999999999877665 45789999
Q ss_pred HHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhccccCCccchhhccc---ccccch
Q 020148 258 QLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE---VRRNLF 316 (330)
Q Consensus 258 ~~~~~~~lL~~~~p~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD---~~~~~f 316 (330)
.+..++.+|+.++|+||+||.+.|+++.+|+++||+|+|+++||+++++|||| .+++.|
T Consensus 216 ~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~ 277 (345)
T 2qfz_A 216 KVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF 277 (345)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999999999999999999999999999 455554
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.7e-46 Score=355.00 Aligned_cols=220 Identities=26% Similarity=0.513 Sum_probs=194.7
Q ss_pred HHHHHHhhccCCCcCHHHHHHHHHhCCCCCCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 020148 43 ARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS 122 (330)
Q Consensus 43 ~~~W~~~l~~~~~i~~~kll~~~~~~Gip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 122 (330)
.++|.+++.+++.++.++ ++.++++|||+.+|+.||++|+|++|.+.+ +|..+...++..|.++++++....
T Consensus 8 ~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~----- 79 (396)
T 1fkm_A 8 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQ----- 79 (396)
T ss_dssp HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSS-----
T ss_pred HHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 479999999876689988 667888999999999999999999998765 456777888999999998753200
Q ss_pred CccccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCChhhHHHHHHHHHHHH
Q 020148 123 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYS 202 (330)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~ 202 (330)
+ .. ..+..+||++||.||+|++++|+.+.+++.|+|||.+|+
T Consensus 80 -----------------~-----------------~~----~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya 121 (396)
T 1fkm_A 80 -----------------H-----------------SR----DIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA 121 (396)
T ss_dssp -----------------C-----------------ST----HHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHH
T ss_pred -----------------C-----------------cc----cHHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHH
Confidence 0 00 015678999999999999999999999999999999999
Q ss_pred HhcCCCCccCChhHHHHHHHHhhc------------------c----------hhHHHHHHHHHHHHHHhhhcCCCChhh
Q 020148 203 WVDNDIGYVQGMNDICSPMIVLLE------------------N----------EADAFWCFEHTMRRLRENFRTNTGMIG 254 (330)
Q Consensus 203 ~~~~~igY~QGm~~i~a~ll~~~~------------------~----------E~~aF~~f~~l~~~~~~~~~~~~~~~~ 254 (330)
.+||++|||||||+|||+||+++. + |++|||||+++|++++.+|. .+++|
T Consensus 122 ~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~--~~~~~ 199 (396)
T 1fkm_A 122 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI--HGQPG 199 (396)
T ss_dssp HHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS--TTCHH
T ss_pred HHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHh--hcHHH
Confidence 999999999999999999998762 1 99999999999999877775 45789
Q ss_pred HHHHHHHHHHHHHhHCHHHHHHHHhCCCCcchhhHHHHHHhccccCCccchhhccc
Q 020148 255 VQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE 310 (330)
Q Consensus 255 ~~~~~~~~~~lL~~~~p~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD 310 (330)
+...+..++.+|+.++|+||+||++.|+++.+|+++||+|+|+++||+++++||||
T Consensus 200 i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD 255 (396)
T 1fkm_A 200 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 255 (396)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-45 Score=339.43 Aligned_cols=228 Identities=21% Similarity=0.351 Sum_probs=176.0
Q ss_pred HHHHH-HhhccCCC-cCHHHHHHHHHhCCCCCCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 020148 43 ARRWH-AAFSEDGH-LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPII 120 (330)
Q Consensus 43 ~~~W~-~~l~~~~~-i~~~kll~~~~~~Gip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~ 120 (330)
..+|. +++.+++. .+.++ ++.++++|||+++|+.||++++|+.. ..+.+.++...+..+..|..+.......
T Consensus 21 ~~~W~~~il~~w~~~~~~~~-lr~l~~~GIP~~lR~~vW~~llg~~~-~~~~~~y~~ll~~~~~~~~~~~~~~~~~---- 94 (334)
T 2qq8_A 21 VLTWNNEILPNWETMWCSRK-VRDLWWQGIPPSVRGKVWSLAIGNEL-NITHELFDICLARAKERWRSLSTGGSEV---- 94 (334)
T ss_dssp HHHHHHTTGGGCC--CCCHH-HHHHHHTCCCHHHHHHHHHHHHCCTT-CCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhHHhccChHH-HHHHHHCCCCHHHHHHHHHHHhCCcc-ccCHHHHHHHHHHHHHHHHHhccccccC----
Confidence 47898 57777554 45666 78888999999999999999999753 4555555555555555555443321000
Q ss_pred CCCccccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCCh-hhHHHHHHHHH
Q 020148 121 GSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE-TNQAKLWDVLA 199 (330)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~-~~~~~L~~IL~ 199 (330)
.+++ .|.+ .....+..+||++||.||+|++++|+.+ .+++.|+|||.
T Consensus 95 ----------~~~d-----~~~~-----------------~~~~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~ 142 (334)
T 2qq8_A 95 ----------ENED-----AGFS-----------------AADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILG 142 (334)
T ss_dssp --------------------------------------------CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHH
T ss_pred ----------cccc-----cccc-----------------cccchhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHH
Confidence 0000 0000 0000145689999999999999999875 57999999999
Q ss_pred HHHHhcCCCCccCChhHHHHHHHHhhcchhHHHHHHHHHHHHHHh-hhcCCCChhhHHHHHHHHHHHHHhHCHHHHHHHH
Q 020148 200 IYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRE-NFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLE 278 (330)
Q Consensus 200 ~y~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~lL~~~~p~L~~hl~ 278 (330)
+|+.+||++|||||||+|||+||+++ +|++|||||+++|++..+ .|+ ..+.+++...+..++.+|+.++|+||+||.
T Consensus 143 aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~ 220 (334)
T 2qq8_A 143 AYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFF-RVDHGLMLTYFAAFEVFFEENLPKLFAHFK 220 (334)
T ss_dssp HHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHH-SSCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhcc-CCChHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 99999999999999999999999887 799999999999987643 333 345678999999999999999999999999
Q ss_pred hCCCCcchhhHHHHHHhccccCCccchhhccc
Q 020148 279 DLDGGEYLFAFRMLMVLFRREFSFVDALYLWE 310 (330)
Q Consensus 279 ~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD 310 (330)
+.|+++.+|+++||+|+|+++||++.++||||
T Consensus 221 ~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD 252 (334)
T 2qq8_A 221 KNNLTPDIYLIDWIFTLYSKSLPLDLACRIWD 252 (334)
T ss_dssp HTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHH
T ss_pred HcCCCccchHHHHHHHHhcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=3.2e-45 Score=340.76 Aligned_cols=217 Identities=22% Similarity=0.436 Sum_probs=177.1
Q ss_pred CHHHHHHhhccCCC----cCHHHHHHHHHhCCCCCCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020148 42 SARRWHAAFSEDGH----LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIV 117 (330)
Q Consensus 42 ~~~~W~~~l~~~~~----i~~~kll~~~~~~Gip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~ 117 (330)
+.++|.+++.++|+ .+.++ ++.++++|||+.+|+.||++|+|+++...+..+ .....+..|.++.++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~---~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPS---KQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCS---SSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcchh---hhhhchHHHHHHHHhcC---
Confidence 45789999988664 46777 677777899999999999999997431111000 00112345555533210
Q ss_pred ccCCCCccccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCCh--hhHHHHH
Q 020148 118 PIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLW 195 (330)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~--~~~~~L~ 195 (330)
...++|++||.||+|++++|... .+++.|+
T Consensus 102 ------------------------------------------------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~ 133 (331)
T 3qye_A 102 ------------------------------------------------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLY 133 (331)
T ss_dssp ------------------------------------------------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHH
T ss_pred ------------------------------------------------CchhHHHHhhcccCCCchhhcCCCcccHHHHH
Confidence 22479999999999999999875 7899999
Q ss_pred HHHHHHHHhcCCCCccCChhHHHHHHHHhhcchhHHHHHHHHHHHHH--HhhhcCCCChhhHHHHHHHHHHHHHhHCHHH
Q 020148 196 DVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL--RENFRTNTGMIGVQSQLSTLSQIIRTIDPKL 273 (330)
Q Consensus 196 ~IL~~y~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~lL~~~~p~L 273 (330)
|||.+|+.+||++|||||||+|||+|++++ +|++|||||+++|+.+ +..| .++++++...+..++.+|+.++|+|
T Consensus 134 ~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~~p~L 210 (331)
T 3qye_A 134 NILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQY--RPDMIILQIQMYQLSRLLHDYHRDL 210 (331)
T ss_dssp HHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGG--STTCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcC--CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888 7999999999999875 3444 3567899999999999999999999
Q ss_pred HHHHHhCCCCcchhhHHHHHHhccccCCccchhhccc---ccccch
Q 020148 274 HQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE---VRRNLF 316 (330)
Q Consensus 274 ~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD---~~~~~f 316 (330)
|+||.+.|+++.+|+++||+|+|+++||++.++|||| +++..|
T Consensus 211 ~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~ 256 (331)
T 3qye_A 211 YNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEV 256 (331)
T ss_dssp HHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHH
Confidence 9999999999999999999999999999999999999 444444
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.3e-44 Score=330.98 Aligned_cols=208 Identities=21% Similarity=0.373 Sum_probs=174.7
Q ss_pred HHHHHHhhccCCCc---CHHHHHHHHHhCCCCCCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 020148 43 ARRWHAAFSEDGHL---DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI 119 (330)
Q Consensus 43 ~~~W~~~l~~~~~i---~~~kll~~~~~~Gip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 119 (330)
.++|.+++.+++.. +.++ ++.++++|||+.+|+.||+.|+|+.+. ......|..+.++.
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~-l~~l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~------ 66 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKG-LSTLVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD------ 66 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTT-HHHHHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHhhhcccCHHH-HHHHHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc------
Confidence 46799998874332 3445 677778999999999999999998652 12345676654320
Q ss_pred CCCCccccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCCh--hhHHHHHHH
Q 020148 120 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDV 197 (330)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~--~~~~~L~~I 197 (330)
.+..++|++||.||+|++++|+.. .+++.|+||
T Consensus 67 ---------------------------------------------~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~I 101 (310)
T 3hzj_A 67 ---------------------------------------------SAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKI 101 (310)
T ss_dssp ---------------------------------------------CTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHH
T ss_pred ---------------------------------------------CCcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHH
Confidence 023578999999999999999875 689999999
Q ss_pred HHHHHHhcCCCCccCChhHHHHHHHHhhcchhHHHHHHHHHHHHH--HhhhcCCCChhhHHHHHHHHHHHHHhHCHHHHH
Q 020148 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL--RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 275 (330)
Q Consensus 198 L~~y~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~lL~~~~p~L~~ 275 (330)
|.+|+.+||++|||||||+|||+||+++ +|++|||||+++|++. +..| .++++++...+..++.+|+.++|+||+
T Consensus 102 L~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~~p~L~~ 178 (310)
T 3hzj_A 102 CKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLY--RNNFEDLHCKFYQLERLMQEQLPDLHS 178 (310)
T ss_dssp HHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGT--HHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccc--cccHHHHHHHHHHHHHHHHHhChHHHH
Confidence 9999999999999999999999999998 7999999999999873 4444 456789999999999999999999999
Q ss_pred HHHhCCCCcchhhHHHHHHhccccCCccchhhccc---ccccch
Q 020148 276 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE---VRRNLF 316 (330)
Q Consensus 276 hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD---~~~~~f 316 (330)
||.+.|+++.+|+.+||+|+|++++|++.++|||| +++..|
T Consensus 179 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~ 222 (310)
T 3hzj_A 179 HFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNI 222 (310)
T ss_dssp HHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHH
Confidence 99999999999999999999999999999999999 444444
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=6.5e-41 Score=306.31 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=169.0
Q ss_pred HHHHHhhccCCCcCHHHHHHHHHhC-C-CCCCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 020148 44 RRWHAAFSEDGHLDIAKVLRRIQRG-G-IHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (330)
Q Consensus 44 ~~W~~~l~~~~~i~~~kll~~~~~~-G-ip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 121 (330)
+++++++.+ +.+|.+++++.+..+ | +|+++|+.||+.|+|+.+...+.. |.....
T Consensus 21 ~~i~~~l~~-~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~~---------- 77 (292)
T 4hl4_A 21 AEIHQALNS-DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNLR---------- 77 (292)
T ss_dssp HHHHHHHTS-SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTHH----------
T ss_pred HHHHHHHcC-CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhhc----------
Confidence 457777754 668999955544433 3 789999999999999977644311 110000
Q ss_pred CCccccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCC----hhhHHHHHHH
Q 020148 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYES----ETNQAKLWDV 197 (330)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~----~~~~~~L~~I 197 (330)
...+..+||++||.||+++++.|.. +..++.|.||
T Consensus 78 -----------------------------------------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~i 116 (292)
T 4hl4_A 78 -----------------------------------------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDI 116 (292)
T ss_dssp -----------------------------------------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHH
T ss_pred -----------------------------------------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHH
Confidence 0014568999999999999998764 3467899999
Q ss_pred HHHHHHhcCCCCccCChhHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhHCHHHHHHH
Q 020148 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHL 277 (330)
Q Consensus 198 L~~y~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~p~L~~hl 277 (330)
|.+|+.+||++|||||||+|||+||+++ +|++|||||+++|+...+.|+ .+++.++...+..++.+|+.++|+||+||
T Consensus 117 L~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~-~~~~~~~~~~~~~l~~ll~~~~P~L~~hL 194 (292)
T 4hl4_A 117 ILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFM-DPTMDNTKHILNYLMPIIDQVNPELHDFM 194 (292)
T ss_dssp HHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGG-CSSSCTTTGGGGGHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 9999999999999999999999999888 799999999999998666665 45677899999999999999999999999
Q ss_pred HhCCCCcchhhHHHHHHhccccCC-ccchhhccc---ccccchhhhh
Q 020148 278 EDLDGGEYLFAFRMLMVLFRREFS-FVDALYLWE---VRRNLFFTYL 320 (330)
Q Consensus 278 ~~~~i~~~~f~~~W~ltlF~~~l~-~~~v~riWD---~~~~~f~~~~ 320 (330)
++.++ ..+|+++||+|+|++++| ++.++|||| +++..|.+|.
T Consensus 195 ~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v 240 (292)
T 4hl4_A 195 QSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYF 240 (292)
T ss_dssp C-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHH
T ss_pred HHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999 579999999999999996 999999999 4555555553
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=256.87 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=153.2
Q ss_pred HHHHhhccCCCcCHHHHHHHHHhCCCCCCchHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 020148 45 RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGK 124 (330)
Q Consensus 45 ~W~~~l~~~~~i~~~kll~~~~~~Gip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~ 124 (330)
..++++. +..+|.+++.+.+.+||||+.+|+.||++|+|++|.+++ .|+.+.+.++++|++++++..
T Consensus 28 ~~~~ll~-~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~--~~~~~l~~kr~eY~~l~~~~~---------- 94 (294)
T 3qwl_A 28 SLEILLK-DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHE--SHAKVMMYRKEQYLDVLHALK---------- 94 (294)
T ss_dssp HHHHHTT-SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGG--GHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHhc-CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCch--hHHHHHHHHHHHHHHHHHhhh----------
Confidence 4556655 478899996666666569999999999999999999886 467889999999999988742
Q ss_pred cccccccccCCCCcCCCCCcccCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCcCCCChhhHHHHHHHHHHHHHh
Q 020148 125 FITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWV 204 (330)
Q Consensus 125 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~~~ 204 (330)
+.++|..+.++ ....+..|...
T Consensus 95 ------------------------------------------~~r~I~~~tP~----------------~~vfl~~~~~~ 116 (294)
T 3qwl_A 95 ------------------------------------------VVRFVSDATPQ----------------AEVYLRMYQLE 116 (294)
T ss_dssp ------------------------------------------HTTSCCTTSCH----------------HHHHHHHHHHH
T ss_pred ------------------------------------------hhhhhhccCch----------------HHHHHHHHHcc
Confidence 23444442211 11222223221
Q ss_pred ----------cCCCCccCChhHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhHCHHHH
Q 020148 205 ----------DNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLH 274 (330)
Q Consensus 205 ----------~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~p~L~ 274 (330)
+++ .++|||..||++++.++.+|++|||||+++|+++..+|. ++++|++.. ++.+|+.++|+|+
T Consensus 117 ~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~--~~~~gl~~~---l~~LL~~~dP~L~ 190 (294)
T 3qwl_A 117 SGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYR--DSLPQLPKA---FEQYLNLEDGRLL 190 (294)
T ss_dssp HTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTT--TTGGGHHHH---HHHHHHHHCHHHH
T ss_pred cccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhC--CChhHHHHH---HHHHHHHHHHHHH
Confidence 122 246999999999999999999999999999999887775 457788765 4899999999999
Q ss_pred HHHHhCCCCcchhhHHHHHHhccccCCccchhhccc---ccccchhh
Q 020148 275 QHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE---VRRNLFFT 318 (330)
Q Consensus 275 ~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD---~~~~~f~~ 318 (330)
+||++.|+.+.+++.+||+|+|++++|+++++|||| +++..|++
T Consensus 191 ~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~ 237 (294)
T 3qwl_A 191 THLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILV 237 (294)
T ss_dssp HHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHH
T ss_pred HHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHH
Confidence 999999998777777999999999999999999999 44444444
No 8
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=25.23 E-value=59 Score=22.54 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=19.6
Q ss_pred HHHHHhCCCCCCchHHHHHHhhCC
Q 020148 62 LRRIQRGGIHPSIKGLVWEFLLGC 85 (330)
Q Consensus 62 l~~~~~~Gip~~~R~~vW~~LLg~ 85 (330)
+..+..-.||...|..+|+-++..
T Consensus 41 ledL~~mkIpe~~R~kIWk~l~e~ 64 (80)
T 1dxs_A 41 IEDLGALKIPEQYRMTIWRGLQDL 64 (80)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHHHhhHHHh
Confidence 345667789999999999999864
No 9
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=24.49 E-value=77 Score=24.44 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=9.8
Q ss_pred CCCcCHHHHHHHHHhCCCC
Q 020148 53 DGHLDIAKVLRRIQRGGIH 71 (330)
Q Consensus 53 ~~~i~~~kll~~~~~~Gip 71 (330)
+|.|+.+++.+.+..-|.+
T Consensus 99 ~G~I~~~el~~~l~~~g~~ 117 (159)
T 3i5g_C 99 QGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp SSEECHHHHHHHHHHSSSC
T ss_pred CCcCcHHHHHHHHHHhCCC
Confidence 4556666544444444543
No 10
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=22.11 E-value=26 Score=24.16 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=9.3
Q ss_pred CccCChhHHHH
Q 020148 209 GYVQGMNDICS 219 (330)
Q Consensus 209 gY~QGm~~i~a 219 (330)
-|.|||.++++
T Consensus 17 lyfqgM~~~a~ 27 (96)
T 2js3_A 17 LYFQGMTDTAA 27 (96)
T ss_dssp BTTBSTTTHHH
T ss_pred eeeccccccCH
Confidence 49999999874
Done!