BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020149
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/302 (50%), Positives = 199/302 (65%), Gaps = 1/302 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L FY +CP A IV+ + +A+ +TR+ ASL+RLHFHDCFV GCDA
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + PN NSARGF V+D IK+ALE CP VSC+D+LALA+ S L GGPSW V L
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQ 209
GRRDS A+L+G+N+ IP+P + I KF GL+ DLVALSG+HT G ARC F
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 210 RLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKG 269
RL+N SG G PD TL+ + + L+ CP++G + LD +P FDN+YF N+ ++ G
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDG 242
Query: 270 LLNSDQVL-STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNCRR 328
LL SDQ L ST +++ +V +A N LFFQ FA+SM+ MGNISPLTG+ GEIR +C++
Sbjct: 243 LLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKK 302
Query: 329 IN 330
+N
Sbjct: 303 VN 304
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/301 (50%), Positives = 187/301 (62%), Gaps = 8/301 (2%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L FY CP A ++ V AVAKE RM ASLLRLHFHDCFV+GCDA
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + PN NS RGFEVID IKS +E CP VSCADILA+AARDS V GG SW V L
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQ 209
GRRDS ASLS +N+D+PAP +++ F +G +LV LSG+HTIG A+CT+FR
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 210 RLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKG 269
R+YN+S +D +YA L+ CP GGD NL D +P KFDN+Y+ N+ KG
Sbjct: 182 RIYNES-------NIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKG 234
Query: 270 LLNSDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNCRRI 329
LL+SDQ L + V Y+ N F F +M+KMGN+SPLTG G+IR NCR+
Sbjct: 235 LLHSDQQLFNGVSTDSQ-VTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKT 293
Query: 330 N 330
N
Sbjct: 294 N 294
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 300 bits (767), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/304 (49%), Positives = 196/304 (64%), Gaps = 1/304 (0%)
Query: 28 GYLYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXX 87
G L FY +CP A +V+ IV +A ++R+ ASL+RLHFHDCFV GCDA
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 88 XXXXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEV 147
EK + PN NSARGF V+D IK+ALE CP VSC D+LALA++ S L+GGPSW V
Sbjct: 62 SIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTV 121
Query: 148 PLGRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSF 207
LGRRD+ A+ +G+N+ IP+P I +KF GL+ DLVALSG+HT G A C F
Sbjct: 122 DLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVF 181
Query: 208 RQRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS 267
RL+N SG G PD TL+ + + L+ CP+ G LD +P FDN+YF N+ ++
Sbjct: 182 SNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSN 241
Query: 268 KGLLNSDQVL-STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GLL SDQ L ST A++ +V +A N LFFQ FA+SM+ MGNISPLTG+ GEIR +C
Sbjct: 242 NGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDC 301
Query: 327 RRIN 330
++ N
Sbjct: 302 KKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/304 (50%), Positives = 193/304 (63%), Gaps = 9/304 (2%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P Y SCP +IV+ VA A+ E RMAASL+RLHFHDCFV GCDA
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS- 60
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + PN NSARGFEVID IK+A+E CP VSCADIL LAARDS VL+GGP W V L
Sbjct: 61 --EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQ 209
GR+D A+ + +NN +P+P I+ KF L+I D+VALSG+HT G A+C F
Sbjct: 119 GRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSN 177
Query: 210 RLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKG 269
RL+N +G G PD TL+ S + L+ CP G LD + FDN+YFKN+L KG
Sbjct: 178 RLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKG 237
Query: 270 LLNSDQVLSTKNEA---SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
LL+SDQ+L + + A + +LV+ Y+ + LFF+ F +M++MGNIS G GE+R NC
Sbjct: 238 LLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTNC 295
Query: 327 RRIN 330
R IN
Sbjct: 296 RVIN 299
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/304 (48%), Positives = 188/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVALSG HT G +C S
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 327 RRIN 330
R +N
Sbjct: 303 RVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 280 bits (716), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 145/304 (47%), Positives = 188/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L +D +PT FDN Y+ N+ K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQK 242
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 327 RRIN 330
R +N
Sbjct: 303 RVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/304 (47%), Positives = 187/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVALSG HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 327 RRIN 330
R +N
Sbjct: 302 RVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/304 (47%), Positives = 187/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 327 RRIN 330
R +N
Sbjct: 303 RVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/304 (47%), Positives = 187/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVALSG HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 327 RRIN 330
R +N
Sbjct: 302 RVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/304 (47%), Positives = 187/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVALSG HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 327 RRIN 330
R +N
Sbjct: 302 RVVN 305
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/304 (47%), Positives = 187/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVALSG H+ G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 327 RRIN 330
R +N
Sbjct: 302 RVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/304 (47%), Positives = 186/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++P P T + F+ GL+ DLVALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 327 RRIN 330
R +N
Sbjct: 303 RVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 277 bits (709), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 144/304 (47%), Positives = 186/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++P P T + F+ GL+ DLVALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 327 RRIN 330
R +N
Sbjct: 303 RVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 277 bits (709), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 144/304 (47%), Positives = 186/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHFHDCFV GCDA
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVAL G HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 327 RRIN 330
R +N
Sbjct: 302 RVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 276 bits (706), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/304 (47%), Positives = 186/304 (61%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+LRLHF DCFV GCDA
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVALSG HT G +C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 327 RRIN 330
R +N
Sbjct: 303 RVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 273 bits (698), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 185/304 (60%), Gaps = 3/304 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FYD+SCP IV+ + + + R+AAS+L LHF DCFV GCDA
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
EK + N NSARGF VID +K+A+E CP+TVSCAD+L +AA+ S L GGPSW VPL
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLD-IVDLVALSGSHTIGNARCTSFR 208
GRRDS A L +N ++PAP T + F+ GL+ DLVALSG HT G +C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RLYN S G PD TL+ +Y LR CP +G L D +PT FDN Y+ N+ K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 269 GLLNSDQVLSTKNEA--SMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL+ SDQ L + A ++ LV+ +A + FF F ++M +MGNI+PLTG +G+IR NC
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 327 RRIN 330
R +N
Sbjct: 302 RVVN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/302 (47%), Positives = 188/302 (62%), Gaps = 1/302 (0%)
Query: 30 LYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXX 89
L P FY +CP IV ++ A + R+ ASL+RLHFHDCFV+GCD
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 90 XXEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL 149
E+ + PN NS RG +V+++IK+A+E CP TVSCADILA+AA ++VL GGP W VPL
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 150 GRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQ 209
GRRDS A+ + +N ++PAP + F +QGL+ +DLV LSG HT G ARC++F
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 210 RLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKG 269
RLYN S G PD TL+ +Y LR CP++ NL LD +P +FDN Y+ N+L G
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNG 241
Query: 270 LLNSDQVL-STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNCRR 328
LL SDQ L ST ++ +V ++ N + FF F SM+KMGNI LTG+ GEIR C
Sbjct: 242 LLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNF 301
Query: 329 IN 330
+N
Sbjct: 302 VN 303
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/299 (45%), Positives = 175/299 (58%), Gaps = 3/299 (1%)
Query: 34 FYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXXXXEK 93
FY+ SCP A+ +VQ VA A A + +A L+R+HFHDCFV+GCDA EK
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 94 RSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRD 153
+ PN S RGFEVI KSA+E CPQTVSCADILA AARDS L G +++VP GRRD
Sbjct: 66 DAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRD 125
Query: 154 SKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYN 213
+ S +N IP+P ++ F + L ++V LSG+H+IG A C+SF RLYN
Sbjct: 126 GTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYN 185
Query: 214 QSGNGQPDNTLDESYAAQLRMGCPRSGG--DQNLFFLDFVSPTKFDNSYFKNILASKGLL 271
+ D TL SYAA LR CP + LD ++P+ DN Y+ + + GLL
Sbjct: 186 FNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGLL 245
Query: 272 NSDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNCRRIN 330
SDQ L T+ S VK A N + +FA++MVKMG I LTG +GEIR NC +N
Sbjct: 246 TSDQALVTEANLSAA-VKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/298 (43%), Positives = 188/298 (63%), Gaps = 14/298 (4%)
Query: 34 FYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXXXXEK 93
FY +CP+A+ IV+ V +AV K+ +AA LLRLHFHDCFV+GCDA E+
Sbjct: 13 FYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQ 72
Query: 94 RSNPN---RNSARGFEVIDEIKSALEKEC-PQTVSCADILALAARDSTVLTGGPSWEVPL 149
++ PN R SA F+ +++I+ LE+EC VSC+DILALAARDS V++GGP + VPL
Sbjct: 73 QAPPNLTLRPSA--FKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRVPL 130
Query: 150 GRRDSKG-ASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFR 208
GRRDS+ AS +D+P P++ Q++L GLD DLV +SG HTIG A C+SF
Sbjct: 131 GRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSSFE 190
Query: 209 QRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK 268
RL+ +PD T+ ++ ++L+ CP G D+ LD +P FDN Y+ +++ +
Sbjct: 191 DRLFP-----RPDPTISPTFLSRLKRTCPAKGTDRRT-VLDVRTPNVFDNKYYIDLVNRE 244
Query: 269 GLLNSDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNISPLTGNRGEIRRNC 326
GL SDQ L T N + +V+++A++ FF+QF S+ KMG + T ++GE+RRNC
Sbjct: 245 GLFVSDQDLFT-NAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 117/284 (41%), Gaps = 56/284 (19%)
Query: 35 YDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXXXXEKR 94
Y + KA+ ++ +A E + A +LRL +H G + +
Sbjct: 11 YQKAIEKAKRKLRGFIA-----EKKCAPLILRLAWHSA---GTFDSKTKTGGPFGTIKHQ 62
Query: 95 SNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--GRR 152
+ + G ++ + ++++ P VS AD LA + +TGGP EVP GR
Sbjct: 63 AELAHGANNGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGP--EVPFHPGRE 119
Query: 153 DSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLY 212
D G D ++ + + K GL D+VALSG HTIG A ++R
Sbjct: 120 DKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLSDQDIVALSGGHTIGAAH----KER-- 171
Query: 213 NQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASK--GL 270
SG P + +P FDNSYF +L + GL
Sbjct: 172 --SGFEGPWTS----------------------------NPLIFDNSYFTELLTGEKDGL 201
Query: 271 LN--SDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
L SD+ L T + LV+KYA + D+FF +A++ +K+ +
Sbjct: 202 LQLPSDKALLT-DSVFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 44/275 (16%)
Query: 50 VAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXXXXEKRSNPNRNSAR------ 103
+ ++++ + SL+RL +H+ C +K +PN S R
Sbjct: 15 IEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFKPECL 61
Query: 104 -----GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGAS 158
G ++ + L+K+ PQ +S AD+ LAA + GGP+ GR D+K S
Sbjct: 62 YAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGS 120
Query: 159 LSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCT-SFRQRLYNQSGN 217
+ G + +P + T + F+ G + + VAL G+HT G S + N
Sbjct: 121 VCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKN 180
Query: 218 GQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVL 277
G D S+ QL D+ D+V K + + +K ++ V
Sbjct: 181 G-----FDNSFFTQLL--------DE-----DWVLNPKVEQMQLMDRATTKLMMLPSDVC 222
Query: 278 STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
+ + + V+ YA++ND F + FA + K+ +
Sbjct: 223 LLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 257
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 44/275 (16%)
Query: 50 VAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXXXXEKRSNPNRNSAR------ 103
+ ++++ + SL+RL +H+ C +K +PN S R
Sbjct: 16 IEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFKPECL 62
Query: 104 -----GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGAS 158
G ++ + L+K+ PQ +S AD+ LAA + GGP+ GR D+K S
Sbjct: 63 YAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGS 121
Query: 159 LSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCT-SFRQRLYNQSGN 217
+ G + +P + T + F+ G + + VAL G+HT G S + N
Sbjct: 122 VCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKN 181
Query: 218 GQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVL 277
G D S+ QL D+ D+V K + + +K ++ V
Sbjct: 182 G-----FDNSFFTQLL--------DE-----DWVLNPKVEQMQLMDRATTKLMMLPSDVC 223
Query: 278 STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
+ + + V+ YA++ND F + FA + K+ +
Sbjct: 224 LLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 123 VSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSNNDIP--APNNTFQTILTKF 180
V+ AD+ LA+ + GGP + GR D +P P + Q + F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 181 KLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLDESYAAQLRMGCPRSG 240
GL+ ++VALSG+HT+G +R ++SG G+P+ + P +
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRP--------DRSGWGKPETKYTKD--------GPGAP 190
Query: 241 GDQNLFFLDFVSPTKFDNSYFKNILASKG----LLNSDQVLSTKNEASMELVKKYAENND 296
G Q+ KFDNSYFK+I + +L +D L ++ + +KYA + +
Sbjct: 191 GGQSW----TAQWLKFDNSYFKDIKERRDEDLLVLPTDAAL-FEDPSFKVYAEKYAADPE 245
Query: 297 LFFQQFAKSMVKMGNI 312
FF+ +A++ K+ N+
Sbjct: 246 AFFKDYAEAHAKLSNL 261
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 44/275 (16%)
Query: 50 VAKAVAKETRMAASLLRLHFHDCFVKGCDAXXXXXXXXXXXXEKRSNPNRNSAR------ 103
+ ++++ + SL+RL +H+ C +K +PN S R
Sbjct: 16 IEDMISEKLELGPSLIRLAWHEAASYDC-------------FKKDGSPNSASMRFKPECL 62
Query: 104 -----GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGAS 158
G ++ + L+K+ PQ +S AD+ LAA + GGP+ GR D+K S
Sbjct: 63 YAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGS 121
Query: 159 LSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCT-SFRQRLYNQSGN 217
+ G + +P + T + F+ G + + VAL G+HT G S + N
Sbjct: 122 VCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKN 181
Query: 218 GQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVL 277
G D S+ QL D+ D+V K + + +K ++ V
Sbjct: 182 G-----FDNSFFTQLL--------DE-----DWVLNPKVEQMQLMDRATTKLMMLPSDVC 223
Query: 278 STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
+ + + V+ YA++ND F + FA + K+ +
Sbjct: 224 LLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 115/286 (40%), Gaps = 60/286 (20%)
Query: 35 YDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDC--FVKGCDAXXXXXXXXXXXXE 92
Y + KA++ ++ +A E R A +LRL +H F KG
Sbjct: 23 YQKAVEKAKKKLRGFIA-----EKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAEL 77
Query: 93 KRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--G 150
S N G ++ + L+ E P +S AD LA + +TGGP EVP G
Sbjct: 78 AHSANN-----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPG 129
Query: 151 RRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQR 210
R D G D ++ + + K GL D+VALSG HTIG A ++R
Sbjct: 130 REDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER 183
Query: 211 LYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--K 268
SG P + +P FDNSYF +L+ +
Sbjct: 184 ----SGFEGPWTS----------------------------NPLIFDNSYFTELLSGEKE 211
Query: 269 GLLN--SDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
GLL SD+ L + + LV KYA + D FF +A++ K+ +
Sbjct: 212 GLLQLPSDKALLS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 115/286 (40%), Gaps = 60/286 (20%)
Query: 35 YDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDC--FVKGCDAXXXXXXXXXXXXE 92
Y + KA++ ++ +A E R A +LRL +H F KG
Sbjct: 23 YQKAVEKAKKKLRGFIA-----EKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAEL 77
Query: 93 KRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--G 150
S N G ++ + L+ E P +S AD LA + +TGGP EVP G
Sbjct: 78 AHSANN-----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPG 129
Query: 151 RRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQR 210
R D G D ++ + + K GL D+VALSG HTIG A ++R
Sbjct: 130 REDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER 183
Query: 211 LYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--K 268
SG P + +P FDNSYF +L+ +
Sbjct: 184 ----SGFEGPWTS----------------------------NPLIFDNSYFTELLSGEKE 211
Query: 269 GLLN--SDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
GLL SD+ L + + LV KYA + D FF +A++ K+ +
Sbjct: 212 GLLQLPSDKALLS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 115/286 (40%), Gaps = 60/286 (20%)
Query: 35 YDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDC--FVKGCDAXXXXXXXXXXXXE 92
Y + KA++ ++ +A E R A +LRL +H F KG
Sbjct: 11 YQKAVEKAKKKLRGFIA-----EKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAEL 65
Query: 93 KRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--G 150
S N G ++ + L+ E P +S AD LA + +TGGP EVP G
Sbjct: 66 AHSANN-----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPG 117
Query: 151 RRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQR 210
R D G D ++ + + K GL D+VALSG HTIG A ++R
Sbjct: 118 REDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER 171
Query: 211 LYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--K 268
SG P + +P FDNSYF +L+ +
Sbjct: 172 ----SGFEGPWTS----------------------------NPLIFDNSYFTELLSGEKE 199
Query: 269 GLLN--SDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
GLL SD+ L + + LV KYA + D FF +A++ K+ +
Sbjct: 200 GLLQLPSDKALLS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 113/286 (39%), Gaps = 60/286 (20%)
Query: 35 YDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDC--FVKGCDAXXXXXXXXXXXXE 92
Y + KA++ ++ +A E R A +LRL +H F KG
Sbjct: 23 YQKAVEKAKKKLRGFIA-----EKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAEL 77
Query: 93 KRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--G 150
S N G ++ + L+ E P +S AD LA + +TGGP EVP G
Sbjct: 78 AHSANN-----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPG 129
Query: 151 RRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQR 210
R D G D ++ + + K GL D+VALSG HTIG A +
Sbjct: 130 REDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAHKEA---- 183
Query: 211 LYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--K 268
SG P + +P FDNSYF +L+ +
Sbjct: 184 ----SGFEGPWTS----------------------------NPLIFDNSYFTELLSGEKE 211
Query: 269 GLLN--SDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
GLL SD+ L + + LV KYA + D FF +A++ K+ +
Sbjct: 212 GLLQLPSDKALLS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 115/286 (40%), Gaps = 60/286 (20%)
Query: 35 YDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDC--FVKGCDAXXXXXXXXXXXXE 92
Y + KA++ ++ +A E R A +L+L +H F KG
Sbjct: 11 YQKAVEKAKKKLRGFIA-----EKRCAPLMLKLAWHSAGTFDKGTKTGGPFGTIKHPAEL 65
Query: 93 KRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--G 150
S N G ++ + L+ E P +S AD LA + +TGGP EVP G
Sbjct: 66 AHSANN-----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPG 117
Query: 151 RRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQR 210
R D G D ++ + + K GL D+VALSG HTIG A ++R
Sbjct: 118 REDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER 171
Query: 211 LYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--K 268
SG P + +P FDNSYF +L+ +
Sbjct: 172 ----SGFEGPWTS----------------------------NPLIFDNSYFTELLSGEKE 199
Query: 269 GLLN--SDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
GLL SD+ L + + LV KYA + D FF +A++ K+ +
Sbjct: 200 GLLQLPSDKALLS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 114/286 (39%), Gaps = 60/286 (20%)
Query: 35 YDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDC--FVKGCDAXXXXXXXXXXXXE 92
Y + KA++ ++ +A E R A +LRL H F KG
Sbjct: 23 YQKAVEKAKKKLRGFIA-----EKRCAPLMLRLAAHSAGTFDKGTKTGGPFGTIKHPAEL 77
Query: 93 KRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--G 150
S N G ++ + L+ E P +S AD LA + +TGGP EVP G
Sbjct: 78 AHSANN-----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPG 129
Query: 151 RRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQR 210
R D G D ++ + + K GL D+VALSG HTIG A ++R
Sbjct: 130 REDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER 183
Query: 211 LYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--K 268
SG P + +P FDNSYF +L+ +
Sbjct: 184 ----SGFEGPWTS----------------------------NPLIFDNSYFTELLSGEKE 211
Query: 269 GLLN--SDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
GLL SD+ L + + LV KYA + D FF +A++ K+ +
Sbjct: 212 GLLQLPSDKALLS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 114/286 (39%), Gaps = 60/286 (20%)
Query: 35 YDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDC--FVKGCDAXXXXXXXXXXXXE 92
Y + KA++ ++ +A E R A +L L +H F KG
Sbjct: 11 YQKAVEKAKKKLRGFIA-----EKRCAPLMLALAWHSAGTFDKGTKTGGPFGTIKHPAEL 65
Query: 93 KRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--G 150
S N G ++ + L+ E P +S AD LA + +TGGP EVP G
Sbjct: 66 AHSANN-----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPG 117
Query: 151 RRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQR 210
R D G D ++ + + K GL D+VALSG HTIG A ++R
Sbjct: 118 REDKPEPPPEGRLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER 171
Query: 211 LYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--K 268
SG P + +P FDNSYF +L+ +
Sbjct: 172 ----SGFEGPWTS----------------------------NPLIFDNSYFTELLSGEKE 199
Query: 269 GLLN--SDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
GLL SD+ L + + LV KYA + D FF +A++ K+ +
Sbjct: 200 GLLQLPSDKALLS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 91/215 (42%), Gaps = 48/215 (22%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--GRRDSKGASLSG 161
G ++ + L+ E P +S AD LA + +TGGP EVP GR D G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEG 140
Query: 162 SNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPD 221
D ++ + + K GL D+VALSG HTIG A ++R SG P
Sbjct: 141 RLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER----SGFEGPW 190
Query: 222 NTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--KGLLN--SDQVL 277
+ +P FDNSYF +L+ +GLL SD+ L
Sbjct: 191 TS----------------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 278 STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
+ + LV KYA + D FF +A++ K+ +
Sbjct: 223 LS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 91/215 (42%), Gaps = 48/215 (22%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--GRRDSKGASLSG 161
G ++ + L+ E P +S AD LA + +TGGP EVP GR D G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEG 140
Query: 162 SNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPD 221
D ++ + + K GL D+VALSG HTIG A ++R SG P
Sbjct: 141 RLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER----SGFEGPW 190
Query: 222 NTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--KGLLN--SDQVL 277
+ +P FDNSYF +L+ +GLL SD+ L
Sbjct: 191 TS----------------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 278 STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
+ + LV KYA + D FF +A++ K+ +
Sbjct: 223 LS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 91/215 (42%), Gaps = 48/215 (22%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--GRRDSKGASLSG 161
G ++ + L+ E P +S AD LA + +TGGP EVP GR D G
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEG 140
Query: 162 SNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPD 221
D ++ + + K GL D+VALSG HTIG A ++R SG P
Sbjct: 141 RLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER----SGFEGPW 190
Query: 222 NTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--KGLLN--SDQVL 277
+ +P FDNSYF +L+ +GLL SD+ L
Sbjct: 191 TS----------------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKAL 222
Query: 278 STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
+ + LV KYA + D FF +A++ K+ +
Sbjct: 223 LS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 91/215 (42%), Gaps = 48/215 (22%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPL--GRRDSKGASLSG 161
G ++ + L+ E P +S AD LA + +TGGP EVP GR D G
Sbjct: 72 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEG 128
Query: 162 SNNDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPD 221
D ++ + + K GL D+VALSG HTIG A ++R SG P
Sbjct: 129 RLPDATKGSDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH----KER----SGFEGPW 178
Query: 222 NTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILAS--KGLLN--SDQVL 277
+ +P FDNSYF +L+ +GLL SD+ L
Sbjct: 179 TS----------------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKAL 210
Query: 278 STKNEASMELVKKYAENNDLFFQQFAKSMVKMGNI 312
+ + LV KYA + D FF +A++ K+ +
Sbjct: 211 LS-DPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+HT+G T + Y P N
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGK---THLKNSGYEGPWTANP-NV 197
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
D S+ NL D+ N+ + + +L +D L ++
Sbjct: 198 FDNSFYL-------------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 30/209 (14%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPD-- 221
+P + + T F+ ++ ++VAL G+HT+G + L N G D
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG-------KTHLKNSGYEGPWDAT 194
Query: 222 -NTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTK 280
N D S+ NL D+ N+ + + +L +D L +
Sbjct: 195 NNVFDNSFYL-------------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQ 240
Query: 281 NEASMELVKKYAENNDLFFQQFAKSMVKM 309
+ + +VK+YA + D FF+ F+K+ K+
Sbjct: 241 DPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 60/224 (26%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VALSG+HT+G + SG P
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHLKN--------SGYEGP--- 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLL-----NSDQVLS 278
+ A + FDNS++ N+L L N++Q S
Sbjct: 191 ----WTANNNV---------------------FDNSFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 279 -------------TKNEASMELVKKYAENNDLFFQQFAKSMVKM 309
++ + +VK+YA + D FF+ F+K+ K+
Sbjct: 226 KSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 107/295 (36%), Gaps = 36/295 (12%)
Query: 17 APLCFCGKSSSGYLYPQFYDHSCPKAQEIVQCIVAKAVAKETRMAASLLRLHFHDCFVKG 76
PL G Y F Q++ I K E + L+RL +H
Sbjct: 2 TPLVHVASVEKGRSYEDF--------QKVYNAIALKIA--EKKCGPVLVRLAWHTSGTWD 51
Query: 77 CDAXXXXXXXXXXXXEKRSNPNRNSA--RGFEVIDEIKSALEKECPQTVSCADILALAAR 134
+K N N+ GF+ ++ I KE P +S D+ +L
Sbjct: 52 KHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI----HKEFPW-ISSGDLFSLGGV 106
Query: 135 DSTVLTGGPSWEVPLGRRDSKGASLSGSNNDIPAPNNTFQTILTKFKLQGLDIVDLVALS 194
+ GP GR D+ + N +P + + T F+ ++ ++VAL
Sbjct: 107 TAVQEMQGPKIPWRCGRVDTP-EDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALM 165
Query: 195 GSHTIGNARCTSFRQRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPT 254
G+H +G +SG P + + + + NL D+
Sbjct: 166 GAHALGKTHL--------KRSGYEGPFGAANNVFTNEFYL---------NLLNEDWKLEK 208
Query: 255 KFDNSYFKNILASKGLLNSDQVLSTKNEASMELVKKYAENNDLFFQQFAKSMVKM 309
N+ + + +L +D L ++ + +VK+YA + D FF+ F+K+ K+
Sbjct: 209 NDANNEQWDSKSGYMMLPTDYSL-IQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 262
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 32/210 (15%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQP--- 220
+P + + T F+ ++ ++VAL G+HT+G + SG P
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN--------SGYEGPWTA 193
Query: 221 -DNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLST 279
+N D S+ NL D+ N+ + + +L +D L
Sbjct: 194 NNNVFDNSFYL-------------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-I 239
Query: 280 KNEASMELVKKYAENNDLFFQQFAKSMVKM 309
++ + +VK+YA + D FF+ F+K+ K+
Sbjct: 240 QDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y G +
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPGGAANNVF 200
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 201 TNEFYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y G +
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPGGAANNVF 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 196 TNEFYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y G +
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPGGAANNVF 198
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 199 TNEFYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 86 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 139
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y G +
Sbjct: 140 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPGGAANNVF 196
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 197 TNEFYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 241
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 242 YLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y G +
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPGGAANNVF 198
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 199 TNEFYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y G +
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPGGAANNVF 198
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N D S + + + L+ + LS
Sbjct: 199 TNEFYLNLLNEDWKLEKNDANNEQWD-------SKSGYMMLPTNYSLIQDPKYLS----- 246
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+VK+YA + D FF+ F+K+ K+
Sbjct: 247 ---IVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 86/224 (38%), Gaps = 60/224 (26%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+HT+G + SG P
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN--------SGYEGP--- 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLL-----NSDQVLS 278
+ A + FDNS++ N+L L N++Q S
Sbjct: 191 ----WTANNNV---------------------FDNSFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 279 -------------TKNEASMELVKKYAENNDLFFQQFAKSMVKM 309
++ + +VK+YA + D FF+ F+K+ K+
Sbjct: 226 KSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPQGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPQGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G +SG P
Sbjct: 139 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPWGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G +SG P
Sbjct: 144 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPWGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 87 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 140
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G +SG P
Sbjct: 141 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGPFGA 192
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 193 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 242
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 243 YLSIVKEYANDQDRFFKDFSKAFEKL 268
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHLKN--------SGYEGPWGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 194 ANNCFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 194 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 87 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 140
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 141 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 192
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 193 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 242
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 243 YLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 194 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 194 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 194 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y G G +
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGY--EGGGANNVF 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 194 TNEFYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 238
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 239 YLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 86 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 139
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y G G +
Sbjct: 140 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGY--EGGGANNVF 194
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 195 TNEFYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 239
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 240 YLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T ++ Y +
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGK---THLKRSGYEGPWGAANNVF 198
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 199 TNEFYLNLLNENWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 91 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 144
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y G G +
Sbjct: 145 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGY--EGGGANNVF 199
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 200 TNEFYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 244
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 245 YLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPYGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 194 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLD 225
+P P ++ +IL + G V++V L SH+I A + S G P ++
Sbjct: 138 VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADGV-------DPSIPGTPFDSTP 190
Query: 226 ESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDN-SYFKNILASKGLLNSDQVLSTKNEAS 284
E + +Q + G LF P DN ++ L + L SD +L+ + +
Sbjct: 191 EVFDSQFFIETQLKG---RLF------PGTADNKGEAQSPLQGEIRLQSDHLLARDPQTA 241
Query: 285 MELVKKYAENNDLFFQQFAKSMVKM 309
E + N +FA +M KM
Sbjct: 242 CEW-QSMVNNQPKIQNRFAATMSKM 265
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T ++ Y +
Sbjct: 144 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGK---THLKRSGYEGPWGAANNVF 200
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 201 TNEFYLNLLNENWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLD 225
+P P ++ +IL + G V++V L SH+I A + S G P ++
Sbjct: 138 VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA-------DKVDPSIPGTPFDSTP 190
Query: 226 ESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDN-SYFKNILASKGLLNSDQVLSTKNEAS 284
E + +Q + G LF P DN ++ L + L SD +L+ + +
Sbjct: 191 EVFDSQFFIETQLKG---RLF------PGTADNKGEAQSPLQGEIRLQSDHLLARDPQTA 241
Query: 285 MELVKKYAENNDLFFQQFAKSMVKM 309
E + N +FA +M KM
Sbjct: 242 CEW-QSMVNNQPKIQNRFAATMSKM 265
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 91 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 144
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 145 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 196
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 197 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 246
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 247 YLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTELKN--------SGYEGPWGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLD 225
+P P ++ +IL + G V++V L SH+I A + S G P ++
Sbjct: 138 VPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA-------DKVDPSIPGTPFDSTP 190
Query: 226 ESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDN-SYFKNILASKGLLNSDQVLSTKNEAS 284
E + +Q + G LF P DN ++ L + L SD +L+ + +
Sbjct: 191 EVFDSQFFIETQLKG---RLF------PGTADNKGEAQSPLQGEIRLQSDHLLARDPQTA 241
Query: 285 MELVKKYAENNDLFFQQFAKSMVKM 309
E + N +FA +M KM
Sbjct: 242 CEW-QSMVNNQPKIQNRFAATMSKM 265
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 194 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPFGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y +
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPWGAANNVF 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N D S + ++ L+ + LS
Sbjct: 196 TNEFYLNLLNEDWKLEKNDANNEQWD-------SKSGYMHLPTDYSLIQDPKYLS----- 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+VK+YA + D FF+ F+K+ K+
Sbjct: 244 ---IVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGC 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 196 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYIMLPTDYSL-IQDPK 245
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEYYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y +
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPWGAANNVF 198
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 199 TNEFYLNLLNENWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y +
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPWGAANNVF 195
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 196 TNEKYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLD 225
+P P ++ +IL + G V++V L SH+I A + S G P ++
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADGV-------DPSIPGTPFDSTP 190
Query: 226 ESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDN-SYFKNILASKGLLNSDQVLSTKNEAS 284
E + +Q + G LF P DN ++ L + L SD +L+ + +
Sbjct: 191 EVFDSQFFIETQLKG---RLF------PGTADNKGEAQSPLQGEIRLQSDHLLARDPQTA 241
Query: 285 MELVKKYAENNDLFFQQFAKSMVKM 309
E + N +FA +M KM
Sbjct: 242 CEW-QSMVNNQPKIQNRFAATMSKM 265
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y +
Sbjct: 142 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPWGAANNVF 198
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N ++D+ + +L +D L ++
Sbjct: 199 TNEGYLNLLNEDWKLEKNDAN--------NEQWDSK------SGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 142 GRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 194 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T ++ Y +
Sbjct: 142 GRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGK---THLKRSGYEGPWGAANNVF 198
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N D S + + L+ + LS
Sbjct: 199 TNEFYLNLLNEDWKLEKNDANNEQWD-------SKSGYMMLPTXYSLIQDPKYLS----- 246
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+VK+YA + D FF+ F+K+ K+
Sbjct: 247 ---IVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 88 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 141
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G + SG P
Sbjct: 142 GRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGA 193
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 194 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 243
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLD 225
+P P ++ +IL + G V++V L SH+I A + S G P ++
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA-------DKVDPSIPGTPFDSTP 190
Query: 226 ESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDN-SYFKNILASKGLLNSDQVLSTKNEAS 284
E + +Q + G LF P DN ++ L + L SD +L+ + +
Sbjct: 191 EVFDSQFFIETQLKG---RLF------PGTADNKGEAQSPLQGEIRLQSDHLLARDPQTA 241
Query: 285 MELVKKYAENNDLFFQQFAKSMVKM 309
E + N +FA +M KM
Sbjct: 242 CEW-QSMVNNQPKIQNRFAATMSKM 265
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLD 225
+P P ++ +IL + G V++V L SH+I A + S G P ++
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA-------DKVDPSIPGTPFDSTP 190
Query: 226 ESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDN-SYFKNILASKGLLNSDQVLSTKNEAS 284
E + +Q + G LF P DN ++ L + L SD +L+ + +
Sbjct: 191 EVFDSQFFIETQLKG---RLF------PGTADNKGEAQSPLQGEIRLQSDHLLARDPQTA 241
Query: 285 MELVKKYAENNDLFFQQFAKSMVKM 309
E + N +FA +M KM
Sbjct: 242 CEW-QSMVNNQPKIQNRFAATMSKM 265
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 91 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 144
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y +
Sbjct: 145 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPWGAANNVF 201
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N D S + + + L+ + LS
Sbjct: 202 TNEFYLNLLNEDWKLEKNDANNEQWD-------SKSGYMMLPTAYSLIQDPKYLS----- 249
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+VK+YA + D FF+ F+K+ K+
Sbjct: 250 ---IVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 90 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 143
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y +
Sbjct: 144 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPWGAANNVF 200
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N D S + + + L+ + LS
Sbjct: 201 TNEFYLNLLNEDWKLEKNDANNEQWD-------SKSGYMMLPTNYSLIQDPKYLS----- 248
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+VK+YA + D FF+ F+K+ K+
Sbjct: 249 ---IVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 79/206 (38%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 91 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 144
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+H +G T + Y +
Sbjct: 145 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGK---THLKNSGYEGPWGAANNVF 201
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+E Y L D N D S + + L+ + LS
Sbjct: 202 TNEFYLNLLNEDWKLEKNDANNEQWD-------SKSGYMMLPTEYSLIQDPKYLS----- 249
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+VK+YA + D FF+ F+K+ K+
Sbjct: 250 ---IVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLD 225
+P P ++ +IL + G V++V L SH+I A + S G P ++
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA-------DKVDPSIPGTPFDSTP 190
Query: 226 ESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDN-SYFKNILASKGLLNSDQVLSTKNEAS 284
+ +Q + G LF P DN ++ L + L SD +L+ + +
Sbjct: 191 GVFDSQFFIETQLKG---RLF------PGTADNKGEAQSPLQGEIRLQSDHLLARDPQTA 241
Query: 285 MELVKKYAENNDLFFQQFAKSMVKM 309
E + + N +FA +M KM
Sbjct: 242 CEW-QSFVNNQPKIQNRFAATMSKM 265
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNA 202
+P P ++ +IL + G V++V L SH+I A
Sbjct: 138 VPEPQDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNA 202
+P P ++ +IL + G V++V+L SH+I A
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIAAA 174
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLD 225
+P P ++ +IL + G V++V L SH+I A + S G P ++
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA-------DKVDPSIPGTPFDSTP 190
Query: 226 ESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDN-SYFKNILASKGLLNSDQVLSTKNEAS 284
+ + +Q + G LF P DN ++ L + L SD +L+ + +
Sbjct: 191 QVFDSQFFIETQLKG---RLF------PGTADNKGEAQSPLQGEIRLQSDHLLARDPQTA 241
Query: 285 MELVKKYAENNDLFFQQFAKSMVKM 309
E + N +FA +M KM
Sbjct: 242 CEW-QSMVNNQPKIQNRFAATMSKM 265
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNA 202
+P P ++ +IL + G V++V L SH+I A
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVYLLASHSIAAA 174
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNA 202
+P P ++ +IL + G V++V L SH+I A
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 108 IDEIKSALEK-ECPQTVSCADILALA-ARDSTVLTGGPSWEVPLGRRDSKGASLSGSNND 165
IDEI SA + +S D + A A + GG LGR D+ AS ++
Sbjct: 81 IDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHL 137
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNA 202
+P P ++ +IL + G V++V L SH+I A
Sbjct: 138 VPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 85 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 138
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+ +G + SG P
Sbjct: 139 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKN--------SGYEGPWGA 190
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 191 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 240
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 86 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 139
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+ +G + SG P
Sbjct: 140 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKN--------SGYEGPWGA 191
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 192 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 241
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 242 YLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 181 KLQGLDIVDLVALSGSHTIGNARCTSFRQRL------YNQSGNG 218
+LQ D+ L+++ G+ IG ARC FR+R YN NG
Sbjct: 262 ELQWQDVRGLLSIGGT-IIGTARCKEFRERWGRLQACYNMVSNG 304
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 104 GFEVIDEIKSALEKECPQTVSCADILALAARDSTVLTGGPSWEVPLGRRDSKGASLSGSN 163
GF+ ++ I KE P +S D+ +L + GP GR D+ + N
Sbjct: 86 GFKFLEPI----HKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP-EDTTPDN 139
Query: 164 NDIPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNT 223
+P + + T F+ ++ ++VAL G+ +G + SG P
Sbjct: 140 GRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKN--------SGYEGPWGA 191
Query: 224 LDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEA 283
+ + + + NL D+ N+ + + +L +D L ++
Sbjct: 192 ANNVFTNEFYL---------NLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL-IQDPK 241
Query: 284 SMELVKKYAENNDLFFQQFAKSMVKM 309
+ +VK+YA + D FF+ F+K+ K+
Sbjct: 242 YLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1MMF|A Chain A, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
pdb|1MMF|L Chain L, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
Length = 555
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 148 PLGRRDSKGASLSGSNNDIPAPNNTFQTI-----LTKFKLQGLDIVDLVALSGSHTIGNA 202
P+ + + A+ + +N++P P N + + + K + GLDIV ++ SG I +
Sbjct: 431 PIADEEVEAATYAHGSNEMP-PRNVVEDLSAVEEMMKRNITGLDIVGALSRSGFEDIASN 489
Query: 203 RCTSFRQRL 211
RQR+
Sbjct: 490 ILNMLRQRV 498
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 166 IPAPNNTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLD 225
IP P NT IL +F G ++V L +H++ A ++ + P
Sbjct: 152 IPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSL--ASQEGLNSAIFRSPLDSTPQVFDT 209
Query: 226 ESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSYFKNILASKGLLNSDQVLSTKNEASM 285
+ Y L G + G +L F + +SP F + + SD +L+ + +
Sbjct: 210 QFYIETLLKGTTQPG--PSLGFAEELSP--FPGGF---------RIRSDALLARDSRTAC 256
Query: 286 ELVKKYAENNDLFFQQFAKSMVKM 309
+ +N++ Q+F +M KM
Sbjct: 257 RW-QSMTSSNEVMGQRFRAAMAKM 279
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 183 QGLDIVDLVALSGSHTIGNARCT----SFRQR 210
Q LD+ DLV GSH + N RC SFR++
Sbjct: 6 QVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQ 37
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 183 QGLDIVDLVALSGSHTIGNARCT----SFRQR 210
Q LD+ DLV GSH + N RC SFR++
Sbjct: 6 QVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQ 37
>pdb|2HRO|A Chain A, Structure Of The Full-Lenght Enzyme I Of The Pts System
From Staphylococcus Carnosus
Length = 573
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 92 EKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILA 130
E+R+N G+EV D+I+ + E P T + ADI A
Sbjct: 409 EERANLKN---EGYEVADDIELGIMVEIPSTAALADIFA 444
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 121 QTVSCADILALAARDSTVLTGGPSWEVPLGR 151
Q ++ D LALA RD VL+GG V L R
Sbjct: 124 QVMAQTDCLALAQRDYRVLSGGEQQRVQLAR 154
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 208 RQRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSY 260
R+ ++ + G+G N D AQL + +G D+ LDFVS KF N +
Sbjct: 185 RRIMFEKFGSGTGGNQRDIVAEAQLPIAV-VNGRDEPFVELDFVSKVKFGNLW 236
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 208 RQRLYNQSGNGQPDNTLDESYAAQLRMGCPRSGGDQNLFFLDFVSPTKFDNSY 260
R+ ++ + G+G N D AQL + +G D+ LDFVS KF N +
Sbjct: 185 RRIMFEKFGSGTGGNQRDIVAEAQLPIAV-VNGRDEPFVELDFVSKVKFGNLW 236
>pdb|2J6L|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|C Chain C, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|D Chain D, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|E Chain E, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|F Chain F, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|G Chain G, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|H Chain H, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
Length = 500
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 119 CPQTVSCADILALAARDSTV----LTGGPSW--EVPLGRRDSKGASLS--GSNNDIPAPN 170
C T ADI A+D V TG +V L ++ G SL G NN I A
Sbjct: 221 CSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMVQERFGRSLLELGGNNAIIA-- 278
Query: 171 NTFQTILTKFKLQGLDIVDLVALSGSHTIGNARCTSFRQRLYNQSGNGQPDNTLDESYAA 230
F+ L +V AL + RCT+ R+ ++S + + N L ++Y A
Sbjct: 279 ---------FEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIHDEVVNRLKKAY-A 328
Query: 231 QLRMGCPRSGGDQNLFF 247
Q+R+G P D N+ +
Sbjct: 329 QIRVGNPW---DPNVLY 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,996,037
Number of Sequences: 62578
Number of extensions: 347707
Number of successful extensions: 1173
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 186
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)