BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020150
         (330 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
           Stearothermophilus (An Atnos1  ATNOA1 ORTHOLOG)
 pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
           Stearothermophilus (An Atnos1  ATNOA1 ORTHOLOG)
          Length = 369

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 185 RKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVV 238
           R ++ Y  NE      L V+  +L KA  L  +Q+ E+L+  S+R+  E  P+V
Sbjct: 275 RSFVCYMANE------LTVHRTKLEKADSLYANQLGELLSPPSKRYAAEFPPLV 322


>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
           Mutans
          Length = 213

 Score = 28.9 bits (63), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 162 DAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASML 214
           D + P     L+ K GF     L    RY  N    NPD + N  + R+AS+L
Sbjct: 39  DQILPKQFLKLIDKKGFGK--YLMYEWRYLDNNYTENPDFIFNQPEYREASIL 89


>pdb|4F91|B Chain B, Brr2 Helicase Region
          Length = 1724

 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 15/137 (10%)

Query: 184  LRKYIRYALNEKPFN-PDLVVNLI-QLRKASMLDDSQVAEILNEISRRFVR--EKGPVVM 239
            L + + + LN   FN P +  NL+ Q   + M   +++     EI  + +R  +    V+
Sbjct: 1470 LAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVL 1529

Query: 240  NMSGYSEKGFKR----KLAVQALFGKVFYLSELPEF-------CSRDSSLIVKEIFGVTD 288
            + +G+           ++  QA++ K  YL +LP F       C+      V +I  + D
Sbjct: 1530 SSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMED 1589

Query: 289  EDADKLRQHTLSEAGDM 305
            E+ + L Q T S+  D+
Sbjct: 1590 EERNALLQLTDSQIADV 1606


>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
 pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
          Length = 1724

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 15/137 (10%)

Query: 184  LRKYIRYALNEKPFN-PDLVVNLI-QLRKASMLDDSQVAEILNEISRRFVR--EKGPVVM 239
            L + + + LN   FN P +  NL+ Q   + M   +++     EI  + +R  +    V+
Sbjct: 1470 LAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVL 1529

Query: 240  NMSGYSEKGFKR----KLAVQALFGKVFYLSELPEF-------CSRDSSLIVKEIFGVTD 288
            + +G+           ++  QA++ K  YL +LP F       C+      V +I  + D
Sbjct: 1530 SSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMED 1589

Query: 289  EDADKLRQHTLSEAGDM 305
            E+ + L Q T S+  D+
Sbjct: 1590 EERNALLQLTDSQIADV 1606


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,078,297
Number of Sequences: 62578
Number of extensions: 237543
Number of successful extensions: 534
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 4
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)