BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020150
         (330 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O13657|YBCC_SCHPO Putative metal ion transporter C27B12.12c OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=pi066 PE=1 SV=1
          Length = 803

 Score = 33.9 bits (76), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 5   ATSSFSSLQFLPRPKIPQPPFSSPSLLLR-QRRTTYQFSSLVVSAQNDKKSTTTKEVKKK 63
           AT S S+    P   IP+PP+ S + L     ++T QFS    + Q   KST +     +
Sbjct: 280 ATKSCSAAVDCPHTTIPKPPYQSDTDLTELPTKSTAQFSDETFTVQPRLKSTHSSIADNE 339

Query: 64  AEEVEVEVEEELPWIQE 80
             EV+ +V+E    ++E
Sbjct: 340 DREVDSQVDENTRVVEE 356


>sp|Q819Y5|DPO3_BACCR DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579 /
            DSM 31) GN=polC PE=3 SV=1
          Length = 1435

 Score = 33.5 bits (75), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 109  ILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPA 168
            ++AV +AY  V F + F        +  F  + +   +A +   IDE+ QKG DA   P 
Sbjct: 1272 LMAVRIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAA--PK 1329

Query: 169  LKGLVQKTGFSMEDVLRKY 187
             K L+     ++E   R Y
Sbjct: 1330 EKSLLTVLEMTLEMCERGY 1348


>sp|Q65MP7|GATB_BACLD Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
           OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
           GN=gatB PE=3 SV=1
          Length = 476

 Score = 32.0 bits (71), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 151 KTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP 196
           K   EL +KGGDA      KGLVQ    S E  LRK +  AL+  P
Sbjct: 389 KVFKELIEKGGDAEKIVKEKGLVQ---ISDEATLRKLVTEALDNNP 431


>sp|P39475|DHE4_SULSH NADP-specific glutamate dehydrogenase (Fragment) OS=Sulfolobus
           shibatae GN=gdhA PE=3 SV=1
          Length = 390

 Score = 31.6 bits (70), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 81  KALDLVEFTGSVTQAIPGPRVGQSKL---PWILAVPLAYVGVSFVIAFVKTVKKFNSPKF 137
           KAL++V+ TGSV     G +V   +L      + +P A   V         + KFN+PK 
Sbjct: 232 KALEVVQSTGSVVNYPEGKKVTNEELLTSDCDILIPAAVENV---------INKFNAPKV 282

Query: 138 KRKKLV-NKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           K K +V   N  +    DE+ ++ G  V P  L         +   V+  Y+ +A N+
Sbjct: 283 KAKLIVEGANGPLAADADEIIKQRGIVVIPDILA--------NAGGVVGSYVEWANNK 332


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,396,573
Number of Sequences: 539616
Number of extensions: 4869841
Number of successful extensions: 20900
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 20886
Number of HSP's gapped (non-prelim): 42
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)