Query 020150
Match_columns 330
No_of_seqs 21 out of 23
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 12:31:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aq3_A Apoptosis regulator BCL 83.0 1 3.4E-05 38.6 3.8 68 175-242 9-78 (169)
2 2a19_A EIF-2- alpha, eukaryoti 75.2 3.5 0.00012 35.1 4.8 64 166-229 108-174 (175)
3 2w3l_A BCL2-XL, apoptosis regu 67.6 5.6 0.00019 32.4 4.2 48 178-236 1-48 (144)
4 3mva_O Transcription terminati 63.5 9.6 0.00033 34.4 5.3 26 199-224 83-108 (343)
5 1y14_A B32, RPB4, DNA-directed 62.9 16 0.00054 32.5 6.4 58 167-224 90-148 (187)
6 3dfg_A Xcrecx, regulatory prot 59.6 11 0.00039 31.1 4.7 82 168-258 23-105 (162)
7 3sp7_A BCL-2-like protein 1; a 56.7 7.9 0.00027 33.1 3.3 65 177-243 5-73 (172)
8 2nsz_A Programmed cell death p 54.7 20 0.00068 28.7 5.2 77 150-228 11-89 (129)
9 2k9i_A Plasmid PRN1, complete 54.5 12 0.0004 24.8 3.3 27 168-194 23-49 (55)
10 2cpg_A REPA protein, transcrip 51.5 19 0.00065 23.1 3.8 27 168-194 16-42 (45)
11 3ilc_A BCL-2-like protein 1; a 50.7 4.4 0.00015 36.0 0.8 62 179-242 5-110 (197)
12 3c1d_A Protein ORAA, regulator 46.2 23 0.00078 29.0 4.4 87 168-258 11-103 (159)
13 2kua_A BCL-2-like protein 10; 45.8 10 0.00035 32.3 2.3 50 180-242 17-66 (170)
14 3kw6_A 26S protease regulatory 45.5 34 0.0012 24.3 4.8 50 181-235 9-58 (78)
15 2ion_A PDCD4, programmed cell 44.6 30 0.001 28.6 4.9 77 150-228 13-91 (152)
16 1yz7_A Probable translation in 41.3 27 0.00093 30.5 4.3 82 167-251 18-107 (188)
17 3h87_C Putative uncharacterize 39.5 17 0.00057 28.1 2.4 50 167-220 15-68 (73)
18 2d8n_A Recoverin; structural g 39.4 92 0.0031 24.2 6.8 62 163-224 15-78 (207)
19 2xa0_A BCL-2, apoptosis regula 39.2 17 0.00057 32.3 2.7 24 175-198 6-29 (207)
20 1r2d_A Apoptosis regulator BCL 38.8 15 0.00051 33.0 2.3 27 216-242 83-109 (218)
21 2xio_A Putative deoxyribonucle 38.7 21 0.00073 31.0 3.3 21 212-232 271-291 (301)
22 2l2e_A Calcium-binding protein 38.7 93 0.0032 23.6 6.6 47 161-207 5-53 (190)
23 1s1e_A KV channel interacting 37.3 84 0.0029 25.6 6.5 71 154-224 24-96 (224)
24 3d5l_A Regulatory protein RECX 36.6 32 0.0011 29.7 4.0 76 176-258 74-150 (221)
25 3pt3_A E3 ubiquitin-protein li 36.6 17 0.00057 29.6 2.1 21 177-197 95-115 (118)
26 2fji_1 Exocyst complex compone 36.5 1.1E+02 0.0036 28.2 7.7 63 167-234 309-373 (399)
27 2l02_A Uncharacterized protein 36.0 13 0.00045 29.3 1.4 36 188-228 13-48 (82)
28 3m66_A Mterf3, mterf domain-co 35.6 91 0.0031 26.7 6.7 53 167-223 113-169 (270)
29 2c35_A Human RPB4, DNA-directe 35.4 72 0.0025 26.7 5.9 16 213-228 131-146 (152)
30 2krk_A 26S protease regulatory 35.2 40 0.0014 25.1 3.9 50 181-235 17-66 (86)
31 3r20_A Cytidylate kinase; stru 33.2 1.1E+02 0.0039 26.6 7.0 80 162-242 19-136 (233)
32 1ngr_A P75 low affinity neurot 33.2 58 0.002 24.6 4.5 60 149-228 15-75 (85)
33 3o9x_A Uncharacterized HTH-typ 33.0 29 0.001 26.5 2.9 36 195-234 69-104 (133)
34 3e3v_A Regulatory protein RECX 32.9 1.4E+02 0.0047 24.9 7.2 112 131-261 31-149 (177)
35 2yfv_C SCM3, KLLA0F05115P; cel 32.6 19 0.00066 27.5 1.7 25 213-237 17-48 (63)
36 3ayh_A DNA-directed RNA polyme 32.3 65 0.0022 26.3 5.0 47 180-226 52-101 (136)
37 3fmy_A HTH-type transcriptiona 31.3 36 0.0012 23.7 2.9 38 192-233 6-43 (73)
38 2y6w_A BCL-2-like protein 2; a 30.9 34 0.0012 29.0 3.2 23 175-197 18-40 (177)
39 1u78_A TC3 transposase, transp 30.6 1.6E+02 0.0054 21.8 6.5 67 169-235 25-104 (141)
40 2ahq_A Sigma-54, RNA polymeras 30.6 9.1 0.00031 29.4 -0.4 22 214-235 38-63 (76)
41 1q06_A Transcriptional regulat 30.4 1.6E+02 0.0056 23.3 7.0 28 197-224 39-68 (135)
42 3h0g_D DNA-directed RNA polyme 30.3 1.2E+02 0.0042 25.0 6.4 45 178-223 49-94 (135)
43 1o0l_A Apoptosis regulator BCL 30.2 37 0.0013 29.0 3.3 53 178-237 13-65 (188)
44 2rg8_A Programmed cell death p 30.0 40 0.0014 28.2 3.5 78 149-229 13-91 (165)
45 1g8i_A Frequenin, neuronal cal 30.0 1.8E+02 0.0061 22.0 6.9 61 162-222 6-68 (190)
46 1fpw_A Yeast frequenin, calciu 29.0 1.7E+02 0.0057 22.1 6.6 46 161-206 5-52 (190)
47 3u5i_q A0, L10E, 60S acidic ri 28.9 12 0.0004 34.9 0.0 11 66-76 297-307 (312)
48 3erp_A Putative oxidoreductase 28.8 1.5E+02 0.005 26.7 7.2 52 168-222 286-345 (353)
49 3iz5_s 60S acidic ribosomal pr 28.2 12 0.00042 34.8 0.0 13 64-76 302-314 (319)
50 3qq6_A HTH-type transcriptiona 27.9 52 0.0018 23.1 3.3 29 196-224 6-34 (78)
51 1qzm_A ATP-dependent protease 27.4 1.3E+02 0.0045 23.6 5.8 67 176-242 1-83 (94)
52 1p94_A Plasmid partition prote 27.3 58 0.002 24.7 3.6 30 166-195 46-75 (76)
53 3aji_B S6C, proteasome (prosom 26.7 74 0.0025 22.7 4.0 50 181-235 7-56 (83)
54 2l01_A Uncharacterized protein 26.4 25 0.00085 27.5 1.4 36 188-228 15-51 (77)
55 3f2g_A Alkylmercury lyase; MER 25.2 83 0.0028 28.2 4.8 60 181-248 21-80 (220)
56 1s6c_A KV4 potassium channel-i 25.1 1.9E+02 0.0065 21.7 6.2 60 165-224 2-63 (183)
57 1ais_B TFB TFIIB, protein (tra 24.2 1.9E+02 0.0064 23.6 6.4 108 167-291 70-182 (200)
58 1x57_A Endothelial differentia 24.2 74 0.0025 22.4 3.6 28 197-224 10-37 (91)
59 1uxc_A FRUR (1-57), fructose r 24.1 1.6E+02 0.0054 21.0 5.3 51 169-224 3-57 (65)
60 2a5y_A Apoptosis regulator CED 24.0 88 0.003 27.6 4.7 59 175-240 28-86 (204)
61 1bjf_A Neurocalcin delta; calc 24.0 1.7E+02 0.0057 22.2 5.7 30 162-191 6-35 (193)
62 3n6q_A YGHZ aldo-keto reductas 23.6 1.6E+02 0.0054 26.2 6.3 57 168-228 269-333 (346)
63 1tc3_C Protein (TC3 transposas 23.6 1.2E+02 0.0042 17.9 5.3 28 196-224 5-32 (51)
64 2gzx_A Putative TATD related D 23.5 1.1E+02 0.0039 24.8 5.0 34 199-232 220-254 (265)
65 1ohu_A Apoptosis regulator CED 22.9 78 0.0027 27.1 4.0 50 179-235 12-61 (175)
66 2ofy_A Putative XRE-family tra 22.9 1.4E+02 0.0049 20.5 4.8 58 151-219 15-74 (86)
67 1xwy_A DNAse TATD, deoxyribonu 22.2 95 0.0033 25.6 4.3 23 210-232 239-261 (264)
68 2dmn_A Homeobox protein TGIF2L 22.2 76 0.0026 23.4 3.4 46 138-183 7-54 (83)
69 2wzn_A TET3, 354AA long hypoth 22.0 88 0.003 25.0 3.9 46 198-243 11-61 (354)
70 2jul_A Calsenilin; EF-hand, ca 21.8 2.2E+02 0.0075 23.5 6.5 35 157-191 67-101 (256)
71 3kz3_A Repressor protein CI; f 21.6 2E+02 0.0069 19.7 6.1 49 170-225 29-77 (80)
72 1lva_A Selenocysteine-specific 21.6 1.3E+02 0.0044 26.1 5.2 45 149-196 142-186 (258)
73 3v0s_A Perakine reductase; AKR 21.5 2.2E+02 0.0074 25.3 6.8 52 167-222 246-305 (337)
74 3bos_A Putative DNA replicatio 21.5 2.9E+02 0.0098 21.4 7.3 60 148-207 178-241 (242)
75 1r69_A Repressor protein CI; g 21.3 1.7E+02 0.0059 18.8 5.6 48 169-219 6-59 (69)
76 4dox_A Coat protein; all helix 21.3 1.2E+02 0.0043 27.5 5.2 71 198-272 35-107 (226)
77 3ij6_A Uncharacterized metal-d 21.3 69 0.0023 28.3 3.4 23 211-233 283-305 (312)
78 3vlf_B 26S protease regulatory 20.9 1.3E+02 0.0043 22.1 4.4 51 181-236 7-57 (88)
79 4hv0_A AVTR; ribbon-helix-heli 20.6 93 0.0032 25.8 3.8 28 166-193 10-37 (106)
80 3j20_Q 30S ribosomal protein S 20.5 98 0.0033 27.0 4.1 31 196-226 27-57 (158)
81 3u5c_N S27A, YS15, 40S ribosom 20.5 98 0.0034 26.9 4.1 31 196-226 27-57 (151)
82 2vof_A BCL-2-related protein A 20.4 1.1E+02 0.0039 25.2 4.4 17 181-197 15-31 (157)
83 3un6_A Hypothetical protein sa 20.4 51 0.0017 28.3 2.4 75 139-214 243-320 (341)
84 3gpv_A Transcriptional regulat 20.3 2.5E+02 0.0086 22.6 6.4 55 169-224 19-84 (148)
85 3m66_A Mterf3, mterf domain-co 20.2 1.1E+02 0.0038 26.2 4.5 13 211-223 85-97 (270)
86 2xzm_O RPS13E; ribosome, trans 20.0 1.1E+02 0.0037 26.7 4.3 31 196-226 29-59 (153)
87 3ln3_A Dihydrodiol dehydrogena 20.0 1.7E+02 0.0059 25.7 5.8 54 165-222 238-297 (324)
No 1
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=82.98 E-value=1 Score=38.59 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=40.5
Q ss_pred hhCCChHHHHHHHHHHHhccCCCChHHHHHHH--HHHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeecc
Q 020150 175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI--QLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMS 242 (330)
Q Consensus 175 KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi--~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (330)
.+||+.-+|+++||.|.|+.+-+.-....+=+ +-..-.+-..++|.+.|+.++.-+=++|....-|+.
T Consensus 9 ~~~~~~r~lv~~yi~~kL~q~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~~ 78 (169)
T 4aq3_A 9 RTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMS 78 (169)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCCCC-------------------CHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHcCCCcCcccccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 57999999999999999999976543222111 011123456778999999999988888877655543
No 2
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=75.23 E-value=3.5 Score=35.13 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=45.3
Q ss_pred chHHHHHHHhhCCChHHHHHHHHHHHhccCCCChHHHHHHHH---HHhhcCCCcHHHHHHHHHHHHh
Q 020150 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ---LRKASMLDDSQVAEILNEISRR 229 (330)
Q Consensus 166 ~~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~---Lr~as~L~d~evaeiL~E~s~R 229 (330)
.+.++.+..+.|++.+|+..+..|++.++-.=--++....+. .=..+++++++++++|.++++|
T Consensus 108 ~g~V~~i~~~~G~~~e~~~~~~~~~l~~~~g~~~~af~~a~~~~~~l~~~~~~~~~~~~~l~~~~~~ 174 (175)
T 2a19_A 108 HSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPPSKDVLDELKNYISK 174 (175)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHCGGGGTTCCCSCHHHHHHHHHHHCC
T ss_pred eEEEEEchhhcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhCChhhhhhcCCCcHHHHHHHHHHHhc
Confidence 678889999999999999998888886654322333333331 1223566778999999998876
No 3
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=67.59 E-value=5.6 Score=32.42 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccCC
Q 020150 178 FSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGP 236 (330)
Q Consensus 178 Fs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~ 236 (330)
|+..++.+.||.|.|+.+-+...... ..+++++.|+.++..+-++|..
T Consensus 1 ~~~~~L~~dyi~~~l~~~g~~~~~~~-----------~p~~~~~~Lr~~gdele~~~~~ 48 (144)
T 2w3l_A 1 YDNREIVMKYIHYKLSQRGYEWDAGA-----------DSEVVHKTLREAGDDFSRRYRR 48 (144)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCC--------------CHHHHHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHhCCCCCCCcCCC-----------cccHHHHHHHHHHHHHHHHhHH
Confidence 46778999999999998755311110 2345666666666555555543
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=63.47 E-value=9.6 Score=34.39 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHH
Q 020150 199 PDLVVNLIQLRKASMLDDSQVAEILN 224 (330)
Q Consensus 199 ~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (330)
++.+.-.+++=+..|++++|++.++.
T Consensus 83 ~~~l~p~l~fL~~lG~s~~~i~~il~ 108 (343)
T 3mva_O 83 PENLSKRWDLWRKIVTSDLEIVNILE 108 (343)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33444444444445555555554444
No 5
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=62.88 E-value=16 Score=32.49 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=49.2
Q ss_pred hHHHHHHHhhCCChHHHHHHHHHHHhccCCC-ChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 020150 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPF-NPDLVVNLIQLRKASMLDDSQVAEILN 224 (330)
Q Consensus 167 ~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F-~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (330)
+.++.|-.+++-.+..||+|=+.|+-+=-.| ||+.+..++.+=...+|+..+++-|.|
T Consensus 90 ~~v~~lle~~~~~ls~v~~KTLeYl~rFsk~kn~Esa~elre~L~~~kL~efE~aqLaN 148 (187)
T 1y14_A 90 ESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGS 148 (187)
T ss_dssp HHHHHHHHHHSCSCCHHHHHHHHHHHHHCSCCSHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCCHHHHHHcCc
Confidence 3566677788899999999999999999999 999999888664558899998888776
No 6
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=59.58 E-value=11 Score=31.08 Aligned_cols=82 Identities=21% Similarity=0.269 Sum_probs=56.4
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHhhhhccCCeeeecccccc
Q 020150 168 ALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASM-LDDSQVAEILNEISRRFVREKGPVVMNMSGYSE 246 (330)
Q Consensus 168 vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~-L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G~Te 246 (330)
+|+-|.. ...|..||-+| |.++-|+++.|+.+|.-=+..| |+|...|+..-.. |+-+.||+..+- .-+-+
T Consensus 23 Al~~Ls~-r~~s~~EL~~K-----L~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~--~~~~~~G~~~I~-~eL~~ 93 (162)
T 3dfg_A 23 ALGLLVH-REHSKKELNRK-----LQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRN--RASSGYGPLHIR-AELGT 93 (162)
T ss_dssp HHHHHHH-SCCCHHHHHHH-----HHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHH--HHTTTCCHHHHH-HHHHH
T ss_pred HHHHhhc-hhhhHHHHHHH-----HHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHccccHHHHH-HHHHH
Confidence 5555554 46788887665 6788999999999887544444 7888888876433 333689997663 34677
Q ss_pred hhhhhHHHHHHH
Q 020150 247 KGFKRKLAVQAL 258 (330)
Q Consensus 247 ~G~kRK~a~~aL 258 (330)
+|+..-+.-++|
T Consensus 94 KGI~~~~I~~al 105 (162)
T 3dfg_A 94 HGLDSDAVSAAM 105 (162)
T ss_dssp TTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 888776665554
No 7
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=56.68 E-value=7.9 Score=33.10 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHHHhccCCCChHHHH--HHHHHHh--hcCCCcHHHHHHHHHHHHhhhhccCCeeeeccc
Q 020150 177 GFSMEDVLRKYIRYALNEKPFNPDLVV--NLIQLRK--ASMLDDSQVAEILNEISRRFVREKGPVVMNMSG 243 (330)
Q Consensus 177 GFs~~Ei~RKYirY~LnEr~F~~d~Va--DLi~Lr~--as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G 243 (330)
+++.-++.+.||.|.|.-+-|...... |. -+. ..+-.-++|...|+.++.-|-++|.+..-|+..
T Consensus 5 ~~~~r~lv~dyI~yrL~~~g~~~~~~~~~~~--~~~~~~~~~~~~~v~~~Lr~~gdelE~~~~~~f~~~~~ 73 (172)
T 3sp7_A 5 SQSNRELVVDFLSYKLSQKGYSWSQFSDVEE--NRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTS 73 (172)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCGGGTCC--------------CHHHHHHHHHHHHHHHHHHHGGGCSCHHH
T ss_pred chhhhHHHHHHHHHHHhhCCCCCcccccccc--ccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456689999999999999988764321 11 121 233455789999999999999999887766654
No 8
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.70 E-value=20 Score=28.68 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=56.4
Q ss_pred HhhHHHHHhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHHHhccCC-CChHHHHHHH-HHHhhcCCCcHHHHHHHHHHH
Q 020150 150 CKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP-FNPDLVVNLI-QLRKASMLDDSQVAEILNEIS 227 (330)
Q Consensus 150 vkSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~-F~~d~VaDLi-~Lr~as~L~d~evaeiL~E~s 227 (330)
-.-|+|||..+.-..-.-.+++|. ..+-.-|++++-|-.+|..+. =..+.+.+|+ +|-+.--+|.+|+...+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~--~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 346899998764433333566664 446678999999999998762 4467899988 688888899999988776544
Q ss_pred H
Q 020150 228 R 228 (330)
Q Consensus 228 ~ 228 (330)
.
T Consensus 89 ~ 89 (129)
T 2nsz_A 89 N 89 (129)
T ss_dssp H
T ss_pred h
Confidence 3
No 9
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=54.51 E-value=12 Score=24.84 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.6
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhcc
Q 020150 168 ALKGLVQKTGFSMEDVLRKYIRYALNE 194 (330)
Q Consensus 168 vLk~L~~KTGFs~~Ei~RKYirY~LnE 194 (330)
.|..+..+.|.|..+++|.-|+-.|.+
T Consensus 23 ~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 23 RLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 466788899999999999998877654
No 10
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=51.47 E-value=19 Score=23.11 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=22.6
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhcc
Q 020150 168 ALKGLVQKTGFSMEDVLRKYIRYALNE 194 (330)
Q Consensus 168 vLk~L~~KTGFs~~Ei~RKYirY~LnE 194 (330)
.|..+..++|.|..+++|+-|+..|.+
T Consensus 16 ~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 16 NLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 456788899999999999999877654
No 11
>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing, cytoplasm, membrane, mitochondrion, transmembrane; 1.64A {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A 3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A
Probab=50.73 E-value=4.4 Score=36.05 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHhccCCCChHHHHH--------------------------------------------HHHHHhhcCC
Q 020150 179 SMEDVLRKYIRYALNEKPFNPDLVVN--------------------------------------------LIQLRKASML 214 (330)
Q Consensus 179 s~~Ei~RKYirY~LnEr~F~~d~VaD--------------------------------------------Li~Lr~as~L 214 (330)
+--||+-|||.|+|-.|-|.-....| ...++..+.
T Consensus 5 ~~~~~v~~~~~~kls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (197)
T 3ilc_A 5 SNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEAERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIP- 83 (197)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTCC-----------------------------------------------------C-
T ss_pred chHHHHHHHHHHHhhcCCCCccccCccccccccccccccccccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCc-
Confidence 44699999999999988776543332 112222221
Q ss_pred CcHHHHHHHHHHHHhhhhccCCeeeecc
Q 020150 215 DDSQVAEILNEISRRFVREKGPVVMNMS 242 (330)
Q Consensus 215 ~d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (330)
-++|+..|+.++.-+=++|.+..-||.
T Consensus 84 -~~~V~~~Lr~lGdElE~~~~~~F~~m~ 110 (197)
T 3ilc_A 84 -MAAVKQALREAGDEFELRARRAFSDLT 110 (197)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 358999999999999999988765544
No 12
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=46.19 E-value=23 Score=28.98 Aligned_cols=87 Identities=20% Similarity=0.267 Sum_probs=53.3
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhccCC-----CChHHHHHHHH-HHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeec
Q 020150 168 ALKGLVQKTGFSMEDVLRKYIRYALNEKP-----FNPDLVVNLIQ-LRKASMLDDSQVAEILNEISRRFVREKGPVVMNM 241 (330)
Q Consensus 168 vLk~L~~KTGFs~~Ei~RKYirY~LnEr~-----F~~d~VaDLi~-Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~ 241 (330)
+|+-|. ....|..|+-+|=.++..+-+- |+++.|+.+|+ |..-==|+|...|+..-..-.+ +.||+..+-
T Consensus 11 Al~~Ls-~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~--~g~G~~~I~- 86 (159)
T 3c1d_A 11 AVRILA-VRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSR--KGYGPARIR- 86 (159)
T ss_dssp HHHHHT-TSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH--TTCCHHHHH-
T ss_pred HHHHhh-cccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHh--CCccHHHHH-
Confidence 344444 3567888876664332211123 99999999887 5555557899999887553323 678987653
Q ss_pred ccccchhhhhHHHHHHH
Q 020150 242 SGYSEKGFKRKLAVQAL 258 (330)
Q Consensus 242 ~G~Te~G~kRK~a~~aL 258 (330)
.-+.++|+..-+.-++|
T Consensus 87 ~eL~~KGI~~~~i~~al 103 (159)
T 3c1d_A 87 QELNQKGISREATEKAM 103 (159)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 34567788776655554
No 13
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=45.79 E-value=10 Score=32.34 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeecc
Q 020150 180 MEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMS 242 (330)
Q Consensus 180 ~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (330)
..++++.||.|.|.++-+.. .-..+.++++|+.++..|=++|-...=++.
T Consensus 17 t~~L~~dYi~y~l~~~g~~~-------------~~~~s~~~~~Lr~v~~ele~~~~~~f~~~~ 66 (170)
T 2kua_A 17 TRRLLSDYIFFCAREPDTPE-------------PPPTSVEAALLRSVTRQIQQEHQEFFSSFC 66 (170)
T ss_dssp HHHHHHHHHHHHHCCTTSCC-------------CCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45799999999999865421 233457777777777777666655544444
No 14
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=45.51 E-value=34 Score=24.28 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccC
Q 020150 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKG 235 (330)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G 235 (330)
.+||+.|++=.-....+|.+.++ +..-|+|-+|+..+.+|-+..-+++..
T Consensus 9 ~~Il~~~l~~~~~~~~~dl~~la-----~~t~G~SGADi~~l~~eA~~~a~~~~~ 58 (78)
T 3kw6_A 9 LDILKIHSRKMNLTRGINLRKIA-----ELMPGASGAEVKGVCTEAGMYALRERR 58 (78)
T ss_dssp HHHHHHHHTTSEECTTCCHHHHH-----HTCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCCCccCHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 47788776532222334433333 245699999999999999999888854
No 15
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.60 E-value=30 Score=28.61 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=55.9
Q ss_pred HhhHHHHHhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHHHhccC-CCChHHHHHHH-HHHhhcCCCcHHHHHHHHHHH
Q 020150 150 CKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK-PFNPDLVVNLI-QLRKASMLDDSQVAEILNEIS 227 (330)
Q Consensus 150 vkSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY~LnEr-~F~~d~VaDLi-~Lr~as~L~d~evaeiL~E~s 227 (330)
-.-|+|||..+.-..-.-.+++|. ..+-.-|++++-|-.+|..+ .=+.+.+.+|+ +|-+.--+|.+|+...+..+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~--~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 346899998864433333566654 34667899999999999875 34467888988 688888899999988776544
Q ss_pred H
Q 020150 228 R 228 (330)
Q Consensus 228 ~ 228 (330)
.
T Consensus 91 ~ 91 (152)
T 2ion_A 91 N 91 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=41.28 E-value=27 Score=30.47 Aligned_cols=82 Identities=15% Similarity=0.051 Sum_probs=51.9
Q ss_pred hHHHHHHHhhCCChHHHHHHHHHHHhccCCCChHHHHHHHH-----HHhhcCCCcHHHHHHHHHHHHh-hhhccCCe--e
Q 020150 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-----LRKASMLDDSQVAEILNEISRR-FVREKGPV--V 238 (330)
Q Consensus 167 ~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~-----Lr~as~L~d~evaeiL~E~s~R-i~~~~G~v--m 238 (330)
+-|+-...++|.+.+|.+++.-|++.++-.=--|+..+.+. |.. + ++ +++.+.|.++++| |--..=.| .
T Consensus 18 sil~~vAek~~~~~Eely~~i~w~L~~kyG~~ydaFk~av~~~~~vl~~-l-ip-~~~~~~L~~~i~~~l~~q~vkIra~ 94 (188)
T 1yz7_A 18 NLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKG-H-VP-DEWLPVLKEIIDNYVEVPTVTIDAE 94 (188)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHHCGGGSBT-T-BC-TTHHHHHHHHHHHHSCCCCEEEEEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcChHHHHH-h-CC-HHHHHHHHHHHHHhCCCCceEEEEE
Confidence 35778899999999999999999998654322333333332 222 2 55 6677777766665 43222111 3
Q ss_pred eecccccchhhhh
Q 020150 239 MNMSGYSEKGFKR 251 (330)
Q Consensus 239 mn~~G~Te~G~kR 251 (330)
+++.=++--|+++
T Consensus 95 ieltc~~~dGIe~ 107 (188)
T 1yz7_A 95 FEITVPKPNGVEI 107 (188)
T ss_dssp EEEECCSTTHHHH
T ss_pred EEEEeCCCchHHH
Confidence 5566678889885
No 17
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=39.50 E-value=17 Score=28.08 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=34.6
Q ss_pred hHHHHHHHhhCCChHHHHHHHHHHHhccCCCChH---HHHHHHHHH-hhcCCCcHHHH
Q 020150 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPD---LVVNLIQLR-KASMLDDSQVA 220 (330)
Q Consensus 167 ~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d---~VaDLi~Lr-~as~L~d~eva 220 (330)
..|+....+-|.|.++-+|-+|.- -.+.|+ .++||-..- .+.+|.|.||-
T Consensus 15 ~~L~~rAa~~G~S~~~ylr~~Le~----~a~~~~~~~~~~~l~r~~~~~~dl~D~~~m 68 (73)
T 3h87_C 15 ASLDAIAARLGLSRTEYIRRRLAQ----DAQTARVTVTAADLRRLRGAVAGLGDPELM 68 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH----HHTSCCCCCCHHHHHHHHHHSGGGGCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH----HhcCCcccccHHHHHHHHHHHcccCCHHHH
Confidence 468888999999999877776643 333344 566665544 45599999874
No 18
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=39.40 E-value=92 Score=24.21 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=38.8
Q ss_pred CCCchHHHHHHHhhCCChHHHHHHHHHHHhc--cCCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 020150 163 AVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (330)
Q Consensus 163 a~~~~vLk~L~~KTGFs~~Ei~RKYirY~Ln--Er~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (330)
.++...|+.+.+++||+..||-+=|-.|-.+ ....+.+.+..++.-....+.++.++.++++
T Consensus 15 ~l~~~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~ 78 (207)
T 2d8n_A 15 ALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFR 78 (207)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6788899999999999998887766555444 3345555555544322222345555555544
No 19
>2xa0_A BCL-2, apoptosis regulator BCL-2; cell death; 2.70A {Homo sapiens} PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A* 1g5m_A
Probab=39.16 E-value=17 Score=32.29 Aligned_cols=24 Identities=29% Similarity=0.808 Sum_probs=18.1
Q ss_pred hhCCChHHHHHHHHHHHhccCCCC
Q 020150 175 KTGFSMEDVLRKYIRYALNEKPFN 198 (330)
Q Consensus 175 KTGFs~~Ei~RKYirY~LnEr~F~ 198 (330)
..||+.-|++++||.|.|.-+-+.
T Consensus 6 ~~~~~~r~lv~~~i~ykL~q~g~~ 29 (207)
T 2xa0_A 6 RTGYDNREIVMKYIHYKLSQRGYE 29 (207)
T ss_dssp ----CHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCcHHHHHHHHHHHHHhhcCCC
Confidence 468999999999999999887755
No 20
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 2lp8_A* 2lpc_A
Probab=38.78 E-value=15 Score=32.99 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHhhhhccCCeeeecc
Q 020150 216 DSQVAEILNEISRRFVREKGPVVMNMS 242 (330)
Q Consensus 216 d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (330)
-++|++.|+.++..|-++|-.++-|+.
T Consensus 83 ~~~v~~~Lr~lgdElE~~~~~~f~~m~ 109 (218)
T 1r2d_A 83 MAAVKQALREAGDEFELRYRRAFSDLT 109 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999988887665554
No 21
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=38.71 E-value=21 Score=31.02 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=19.6
Q ss_pred cCCCcHHHHHHHHHHHHhhhh
Q 020150 212 SMLDDSQVAEILNEISRRFVR 232 (330)
Q Consensus 212 s~L~d~evaeiL~E~s~Ri~~ 232 (330)
.|++.+++++++.+-++|+|.
T Consensus 271 ~g~~~e~~~~~~~~Na~rlf~ 291 (301)
T 2xio_A 271 RDEDPLELANTLYNNTIKVFF 291 (301)
T ss_dssp HTCCHHHHHHHHHHHHHHHHC
T ss_pred HCcCHHHHHHHHHHHHHHHhC
Confidence 499999999999999999994
No 22
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=38.71 E-value=93 Score=23.64 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=32.3
Q ss_pred CCCCCchHHHHHHHhhCCChHHHHHHHHHHHhc--cCCCChHHHHHHHH
Q 020150 161 GDAVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLIQ 207 (330)
Q Consensus 161 Rda~~~~vLk~L~~KTGFs~~Ei~RKYirY~Ln--Er~F~~d~VaDLi~ 207 (330)
...++...++.|.+.+||+..||-+-|-.|--+ ....+.+.+..++.
T Consensus 5 ~~~l~~~el~~~~~~~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~ 53 (190)
T 2l2e_A 5 QSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYK 53 (190)
T ss_dssp SCCSCHHHHHHHHHHHCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHH
T ss_pred cccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 345677799999999999999986655555544 44456655555543
No 23
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=37.34 E-value=84 Score=25.62 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=33.5
Q ss_pred HHHHhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHHHh--ccCCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 020150 154 DELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYAL--NEKPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (330)
Q Consensus 154 deyfp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY~L--nEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (330)
++=+......++...|+.|.+.+||+..||-+=|-.|-. +...-+.+.+..++.--.-.+.++.++..+++
T Consensus 24 ~~el~~~~~~l~~~~l~~l~~~~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~ 96 (224)
T 1s1e_A 24 EDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFN 96 (224)
T ss_dssp --------------CHHHHHHHSSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHH
T ss_pred ccccccCccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 333444445577778999999999999987665544544 23345555554443321111245555555544
No 24
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=36.61 E-value=32 Score=29.74 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=51.4
Q ss_pred hCCChHHHHHHHHHHHhccCCCChHHHHHHHH-HHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeecccccchhhhhHHH
Q 020150 176 TGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254 (330)
Q Consensus 176 TGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~-Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G~Te~G~kRK~a 254 (330)
.-.|..|+-+| |..+.|+++.|+.+|+ |..-=-|+|+..|+..-..- .-.+.||+..+ ..-+.++|+..-+.
T Consensus 74 r~~S~~EL~~K-----L~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~-~~~~~~G~~~I-~~eL~~KGI~~~~I 146 (221)
T 3d5l_A 74 QMRTESDIVKK-----LKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTM-INTDLKGPGII-RQHLRQKGIGESDI 146 (221)
T ss_dssp SCCCHHHHHHH-----HHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HHHCCCCHHHH-HHHHHHTTCCHHHH
T ss_pred ccccHHHHHHH-----HHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHhccccHHHH-HHHHHHcCCCHHHH
Confidence 35666665554 5567899999999887 66666689999998765422 12367898766 23466778777665
Q ss_pred HHHH
Q 020150 255 VQAL 258 (330)
Q Consensus 255 ~~aL 258 (330)
-++|
T Consensus 147 ~~al 150 (221)
T 3d5l_A 147 DDAL 150 (221)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 5443
No 25
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=36.59 E-value=17 Score=29.61 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHHHHhccCCC
Q 020150 177 GFSMEDVLRKYIRYALNEKPF 197 (330)
Q Consensus 177 GFs~~Ei~RKYirY~LnEr~F 197 (330)
-|++.|++|+-|+||++|.-|
T Consensus 95 ~Y~s~e~L~~kL~~AI~~~gf 115 (118)
T 3pt3_A 95 LYSSKQILKQKLLLAIKTKNF 115 (118)
T ss_dssp CCSSHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHhCCc
Confidence 589999999999999999766
No 26
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=36.54 E-value=1.1e+02 Score=28.23 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=44.9
Q ss_pred hHHHHHHHhhCCCh-HHHHHHHHHHHhccCC-CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhcc
Q 020150 167 PALKGLVQKTGFSM-EDVLRKYIRYALNEKP-FNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234 (330)
Q Consensus 167 ~vLk~L~~KTGFs~-~Ei~RKYirY~LnEr~-F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~ 234 (330)
.+|..|.. -+-+. ++|.--|=-+ ++.-| .+++.|.-++++|+ .++-+++.++|... ++|.+.|
T Consensus 309 ~~l~~l~~-L~~d~~~~i~~~~~~l-~~~ypD~~~~~V~aiL~~R~--D~~~~~~k~ll~~~-~~~~~~~ 373 (399)
T 2fji_1 309 TVMEFFMD-LSCEPIDSILDIWQKY-LEVYWDSRIDLLVGILKCRK--DVSSSERKKIVQQA-TEMLHEY 373 (399)
T ss_dssp HHHHHHHH-HHHSCGGGHHHHHHHH-HTTCTTCCSHHHHHHHTTCT--TCCHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHH-hcCCcHHHHHHHHHHH-HHhCCCCCHHHHHHHHHhcc--CCCHHHHHHHHHHH-HHHHHhH
Confidence 36666666 55566 5555544333 65555 88999999999998 88899999998775 6666543
No 27
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=36.05 E-value=13 Score=29.33 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=20.7
Q ss_pred HHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 020150 188 IRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISR 228 (330)
Q Consensus 188 irY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~ 228 (330)
||.+|+|.. + -.+-.|++++||+|.|++-+|-=.+|
T Consensus 13 VW~~L~~~~--~---~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 13 VWHALNEAD--G---ISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHCC--S---BCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHhccC--C---CCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 466666642 1 12335667777777777766654443
No 28
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=35.56 E-value=91 Score=26.74 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=30.1
Q ss_pred hHHHHHHHhhCCChHHHHHHHHH---HHhccCCCChHHHHHHHH-HHhhcCCCcHHHHHHH
Q 020150 167 PALKGLVQKTGFSMEDVLRKYIR---YALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEIL 223 (330)
Q Consensus 167 ~vLk~L~~KTGFs~~Ei~RKYir---Y~LnEr~F~~d~VaDLi~-Lr~as~L~d~evaeiL 223 (330)
+.+.-|+.+.|++.++| ++-+. ..|. .+++.+..-+. +++.+|++++||..++
T Consensus 113 ~~v~~L~~~lG~~~~~i-~~ll~~~P~il~---~s~e~~~~~v~~l~~~~G~s~~ei~~~v 169 (270)
T 3m66_A 113 NRLGFFQKELELSVKKT-RDLVVRLPRLLT---GSLEPVKENMKVYRLELGFKHNEIQHMI 169 (270)
T ss_dssp HHHHHHHHHHCCCHHHH-HHHHHHSGGGGT---SCSHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHH-HHHHHhCCccee---echHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44555666677777776 33332 2222 34455555555 5677777777766443
No 29
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=35.38 E-value=72 Score=26.70 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=9.5
Q ss_pred CCCcHHHHHHHHHHHH
Q 020150 213 MLDDSQVAEILNEISR 228 (330)
Q Consensus 213 ~L~d~evaeiL~E~s~ 228 (330)
.++|+++.+||.+++.
T Consensus 131 r~sdEeLe~ILd~l~k 146 (152)
T 2c35_A 131 RFEDEELQQILDDIQT 146 (152)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3556666666666554
No 30
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=35.23 E-value=40 Score=25.13 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccC
Q 020150 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKG 235 (330)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G 235 (330)
.+||+.|++=.--...+|.+.+| +..-|+|=+|++.+.+|-+-.-+++..
T Consensus 17 ~~IL~~~l~~~~l~~dvdl~~LA-----~~T~G~SGADL~~l~~eAa~~alr~~~ 66 (86)
T 2krk_A 17 LDILKIHSRKMNLTRGINLRKIA-----ELMPGASGAEVKGVCTEAGMYALRERR 66 (86)
T ss_dssp HHHHHHHTTTSEECTTCCCHHHH-----HTCSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCcccCHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 56777776522112334444443 234599999999999998888887764
No 31
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=33.23 E-value=1.1e+02 Score=26.60 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=50.6
Q ss_pred CCCCchHHHHHHHhhCC---ChHHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCC------------------------
Q 020150 162 DAVNPPALKGLVQKTGF---SMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASML------------------------ 214 (330)
Q Consensus 162 da~~~~vLk~L~~KTGF---s~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L------------------------ 214 (330)
.+..+-..+.|.++.|| +..+++|..-|+++.. .++++..+.+..+-..+.+
T Consensus 19 GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~~v~~~ir~ 97 (233)
T 3r20_A 19 GTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRA-GADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGEDVSSEIRG 97 (233)
T ss_dssp TSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHH-TCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTEECTTGGGS
T ss_pred CCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHc-CCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCeehhhhhcc
Confidence 34555577888888885 6788888888777754 3444333333333222211
Q ss_pred -----------CcHHHHHHHHHHHHhhhhccCCeeeecc
Q 020150 215 -----------DDSQVAEILNEISRRFVREKGPVVMNMS 242 (330)
Q Consensus 215 -----------~d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (330)
...+|-+.|.+.-+.+.++.|.+||+=.
T Consensus 98 ~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GR 136 (233)
T 3r20_A 98 DAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGR 136 (233)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEES
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecc
Confidence 1345668999999988877577888544
No 32
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=33.17 E-value=58 Score=24.61 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHhh-cCCCcHHHHHHHHHHH
Q 020150 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKA-SMLDDSQVAEILNEIS 227 (330)
Q Consensus 149 LvkSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~a-s~L~d~evaeiL~E~s 227 (330)
||+.|| | ..=+.|.++-||+..+| +|+.. + ++-+.-|+.+=.+ -|-|-+...++|+++.
T Consensus 15 l~~lL~-----g------~dW~~LA~~Lg~~~~~I--~~~~~---~----~~pt~~lL~~W~~r~~atv~~L~~aL~~ig 74 (85)
T 1ngr_A 15 VEKLLN-----G------DTWRHLAGELGYQPEHI--DSFTH---E----ACPVRALLASWGAQDSATLDALLAALRRIQ 74 (85)
T ss_dssp HHHHSC-----T------THHHHHHHHTTCCHHHH--HHHHH---S----SCHHHHHHHHGGGSTTCBHHHHHHHHHHTT
T ss_pred HHHHhC-----c------CCHHHHHHHcCCCHHHH--HHHHc---C----CCHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 577777 2 25789999999998766 22222 1 2234455554332 3345555666666554
Q ss_pred H
Q 020150 228 R 228 (330)
Q Consensus 228 ~ 228 (330)
|
T Consensus 75 R 75 (85)
T 1ngr_A 75 R 75 (85)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=33.01 E-value=29 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=25.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhcc
Q 020150 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234 (330)
Q Consensus 195 r~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~ 234 (330)
.-++++ .|-++|+..|||-.|+|+.|. +++.-+.+|
T Consensus 69 ~~~~~~---~l~~~R~~~glsq~~la~~~g-~s~~~i~~~ 104 (133)
T 3o9x_A 69 ETVAPE---FIVKVRKKLSLTQKEASEIFG-GGVNAFSRY 104 (133)
T ss_dssp TTCCHH---HHHHHHHHTTCCHHHHHHHHC-SCTTHHHHH
T ss_pred cCCCHH---HHHHHHHHcCCCHHHHHHHHC-CCHHHHHHH
Confidence 445553 577899999999999999874 444444443
No 34
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.89 E-value=1.4e+02 Score=24.89 Aligned_cols=112 Identities=14% Similarity=0.147 Sum_probs=65.0
Q ss_pred hcCChhhhhhhhhcc--hhhHHhhHHHHHhcCCCCCCch-----HHHHHHHhhCCChHHHHHHHHHHHhccCCCChHHHH
Q 020150 131 KFNSPKFKRKKLVNK--NAMVCKTIDELFQKGGDAVNPP-----ALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVV 203 (330)
Q Consensus 131 K~~SPraKRkR~VnK--Na~LvkSLdeyfp~gRda~~~~-----vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~Va 203 (330)
+-.|.+-=|.|+..| +...++.+=++|...+= +|-. -++.-.++.|++ +..|++.|..|-.+.+.++
T Consensus 31 r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~-ldD~rfA~~~vr~~~~~~~~G-----~~~I~~eL~~KGI~~~~I~ 104 (177)
T 3e3v_A 31 QLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDL-INDKNYAESYVRTMMNTSDKG-----PKVIKLNLSKKGIDDNIAE 104 (177)
T ss_dssp SCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHTTTCCHHHHH
T ss_pred ccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHccccc-----HHHHHHHHHHcCCCHHHHH
Confidence 345555555555544 34455555444444332 2222 223333334565 4678888999999998888
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeecccccchhhhhHHHHHHHHHh
Q 020150 204 NLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGK 261 (330)
Q Consensus 204 DLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G~Te~G~kRK~a~~aLF~K 261 (330)
+.+. .+++++--+.+.+.+++-|+.+.+ .+..-.++|+ .+.|.+|
T Consensus 105 ~al~-----~~~~~de~e~a~~l~~Kk~~~~~~-------~~~~~~~~K~-~~~L~rr 149 (177)
T 3e3v_A 105 DALI-----LYTDKLQVEKGVTLAEKLANRYSH-------DSYRNKQNKI-KQSLLTK 149 (177)
T ss_dssp HHHT-----TSCHHHHHHHHHHHHHHHHHHTTT-------SCHHHHHHHH-HHHHHHT
T ss_pred HHHH-----hCCchhHHHHHHHHHHHHHhhccC-------CChHHHHHHH-HHHHHHC
Confidence 8663 356566667777788887777653 2333445555 4666666
No 35
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=32.61 E-value=19 Score=27.49 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCCcHHHHHH-------HHHHHHhhhhccCCe
Q 020150 213 MLDDSQVAEI-------LNEISRRFVREKGPV 237 (330)
Q Consensus 213 ~L~d~evaei-------L~E~s~Ri~~~~G~v 237 (330)
.|||+||.+. |.-+=+.|+.|||.+
T Consensus 17 ~lsdeevme~hk~adermK~~w~~Ii~KY~~~ 48 (63)
T 2yfv_C 17 KLSDEEVMERHKKADENMKRVWSQIIQKYESI 48 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5889999887 777888899999973
No 36
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=32.31 E-value=65 Score=26.34 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhccCC---CChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 020150 180 MEDVLRKYIRYALNEKP---FNPDLVVNLIQLRKASMLDDSQVAEILNEI 226 (330)
Q Consensus 180 ~~Ei~RKYirY~LnEr~---F~~d~VaDLi~Lr~as~L~d~evaeiL~E~ 226 (330)
...|+++.++|+-+=-. -+++.+.+++..=+..+|+..|+.-|+|-.
T Consensus 52 l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~ 101 (136)
T 3ayh_A 52 LRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNK 101 (136)
T ss_dssp HHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhccC
Confidence 45677777777765422 248888888877777888888888888754
No 37
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=31.28 E-value=36 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=25.6
Q ss_pred hccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhc
Q 020150 192 LNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVRE 233 (330)
Q Consensus 192 LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~ 233 (330)
.++..|+++. |-.+|+..|||-.|+|+.+. +++.-+.+
T Consensus 6 v~~~~~~g~~---lr~~R~~~gltq~elA~~~g-vs~~tis~ 43 (73)
T 3fmy_A 6 VNAETVAPEF---IVKVRKKLSLTQKEASEIFG-GGVNAFSR 43 (73)
T ss_dssp --CCCCCHHH---HHHHHHHTTCCHHHHHHHHC-SCTTHHHH
T ss_pred hccCCCCHHH---HHHHHHHcCCCHHHHHHHhC-cCHHHHHH
Confidence 3455666654 56789999999999999874 44444433
No 38
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=30.91 E-value=34 Score=29.03 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=17.5
Q ss_pred hhCCChHHHHHHHHHHHhccCCC
Q 020150 175 KTGFSMEDVLRKYIRYALNEKPF 197 (330)
Q Consensus 175 KTGFs~~Ei~RKYirY~LnEr~F 197 (330)
..-....++++.||.|.|+++.+
T Consensus 18 ~~~~~~~~L~~dYi~y~l~~~g~ 40 (177)
T 2y6w_A 18 ASAPDTRALVADFVGYKLRQKGY 40 (177)
T ss_dssp --CCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 34456789999999999997655
No 39
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.63 E-value=1.6e+02 Score=21.77 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=41.7
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhc--------cCCCChHHHHHHHHHHhhcCCCcHHHHHHHH-----HHHHhhhhccC
Q 020150 169 LKGLVQKTGFSMEDVLRKYIRYALN--------EKPFNPDLVVNLIQLRKASMLDDSQVAEILN-----EISRRFVREKG 235 (330)
Q Consensus 169 Lk~L~~KTGFs~~Ei~RKYirY~Ln--------Er~F~~d~VaDLi~Lr~as~L~d~evaeiL~-----E~s~Ri~~~~G 235 (330)
.+++....|.|..-|.|-.-+|.-. -+.++++....++++..--.++-.++++.|+ .+-.|++++.|
T Consensus 25 ~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~~g 104 (141)
T 1u78_A 25 LHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG 104 (141)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHHCC
Confidence 5678888888777664432233211 1347788888888875555688888887764 34455555544
No 40
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=30.59 E-value=9.1 Score=29.39 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.0
Q ss_pred CCcHHHHHHHH----HHHHhhhhccC
Q 020150 214 LDDSQVAEILN----EISRRFVREKG 235 (330)
Q Consensus 214 L~d~evaeiL~----E~s~Ri~~~~G 235 (330)
|||.+++++|+ .+|||-|-||=
T Consensus 38 lSD~~I~~~L~~~Gi~IaRRTVaKYR 63 (76)
T 2ahq_A 38 YSDQEIANILKEKGFKVARRTVAKYR 63 (76)
T ss_dssp CCHHHHHHHHTTTSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHH
Confidence 78888888886 47888888873
No 41
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=30.38 E-value=1.6e+02 Score=23.29 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=11.9
Q ss_pred CChHHHHHHHHHH--hhcCCCcHHHHHHHH
Q 020150 197 FNPDLVVNLIQLR--KASMLDDSQVAEILN 224 (330)
Q Consensus 197 F~~d~VaDLi~Lr--~as~L~d~evaeiL~ 224 (330)
|+++.|..|-.++ +.+|++=+||+++|.
T Consensus 39 Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~ 68 (135)
T 1q06_A 39 YTQQHLNELTLLRQARQVGFNLEESGELVN 68 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4444444333222 234555555554443
No 42
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.34 E-value=1.2e+02 Score=24.95 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHhccCCC-ChHHHHHHHHHHhhcCCCcHHHHHHH
Q 020150 178 FSMEDVLRKYIRYALNEKPF-NPDLVVNLIQLRKASMLDDSQVAEIL 223 (330)
Q Consensus 178 Fs~~Ei~RKYirY~LnEr~F-~~d~VaDLi~Lr~as~L~d~evaeiL 223 (330)
....+||+|=+.|+=+=..| |++.+..+..+-.. +|+.-|++-+.
T Consensus 49 ~~~~~v~~kTl~Yl~~Fsk~~~~e~~~~v~~lL~~-~L~~fEia~L~ 94 (135)
T 3h0g_D 49 IPMTDVMKKTVAYFNVFARFKTAEATYACERILGN-RFHKFERAQLG 94 (135)
T ss_dssp CCCTTHHHHHHHHHHTTCTTCSHHHHHHHHHHCCC-CSCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-cCCHHHHHHHc
Confidence 34445555555555554454 25555444443333 45444444433
No 43
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=30.22 E-value=37 Score=28.97 Aligned_cols=53 Identities=8% Similarity=0.103 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccCCe
Q 020150 178 FSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPV 237 (330)
Q Consensus 178 Fs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~v 237 (330)
.+..++++.||.|.|+.+.+..... ....-+..++++.|+.++..+=++|-..
T Consensus 13 ~~~~~L~~dYi~yrl~~~g~~~~~~-------~~~~~~~~~v~~~Lr~~gdele~~~~~~ 65 (188)
T 1o0l_A 13 PDTRALVADFVGYKLRQKGYVCGAG-------PGEGPAADPLHQAMRAAGDEFETRFRRT 65 (188)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTTCS-------GGGSCSCSTTHHHHHHHHHHHHHHCSCS
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCC-------CCCCCChhHHHHHHHHHHHHHHHHhHHH
Confidence 4567899999999998765411100 0112344556666666666666655543
No 44
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=30.04 E-value=40 Score=28.17 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=54.9
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHHHhccCCCChHHHHHHHH-HHhhcCCCcHHHHHHHHHHH
Q 020150 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILNEIS 227 (330)
Q Consensus 149 LvkSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~-Lr~as~L~d~evaeiL~E~s 227 (330)
+...|+|||..+.-..-...+++|.... -.-+++++-|..+|..++=.-+++..|++ |. .-.|+.+|+...+.+.-
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~-~~~ls~~~i~~Gf~~ll 89 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLL 89 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB-TTTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHH
Confidence 3457999999875443344555554222 35688999999999877666778888865 74 48889999987776655
Q ss_pred Hh
Q 020150 228 RR 229 (330)
Q Consensus 228 ~R 229 (330)
+.
T Consensus 90 e~ 91 (165)
T 2rg8_A 90 KD 91 (165)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 45
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=30.03 E-value=1.8e+02 Score=21.95 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=35.5
Q ss_pred CCCCchHHHHHHHhhCCChHHHHHHHHHHHhc--cCCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 020150 162 DAVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (330)
Q Consensus 162 da~~~~vLk~L~~KTGFs~~Ei~RKYirY~Ln--Er~F~~d~VaDLi~Lr~as~L~d~evaei 222 (330)
..++...++.|...++|+..+|-+=|-.|--+ -...+.+.+..+++--...+.++.++.++
T Consensus 6 ~~l~~~~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~ 68 (190)
T 1g8i_A 6 SKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFV 68 (190)
T ss_dssp CSCCHHHHHHHHHTSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHH
T ss_pred ccCCHHHHHHHHHccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCChHHHHHHH
Confidence 34677799999999999998876655555433 33345444444443221124555444333
No 46
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=29.04 E-value=1.7e+02 Score=22.11 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=29.4
Q ss_pred CCCCCchHHHHHHHhhCCChHHHHHHHHHHHhc--cCCCChHHHHHHH
Q 020150 161 GDAVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLI 206 (330)
Q Consensus 161 Rda~~~~vLk~L~~KTGFs~~Ei~RKYirY~Ln--Er~F~~d~VaDLi 206 (330)
...+....|+.|.+.++|+..+|-+=|-.|-.+ ....+.+.+..++
T Consensus 5 ~~~l~~~~l~~l~~~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l 52 (190)
T 1fpw_A 5 TSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIY 52 (190)
T ss_dssp SCCSTTHHHHHHTTTCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHH
Confidence 345777899999999999998875544444332 3344554444443
No 47
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=28.91 E-value=12 Score=34.88 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=0.0
Q ss_pred hhhHHHHhcch
Q 020150 66 EVEVEVEEELP 76 (330)
Q Consensus 66 ~~e~e~e~e~~ 76 (330)
|+|||++++|.
T Consensus 297 e~~ee~d~d~g 307 (312)
T 3u5i_q 297 EEEEESDDDMG 307 (312)
T ss_dssp -----------
T ss_pred cccccccccCC
Confidence 44445555664
No 48
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=28.78 E-value=1.5e+02 Score=26.66 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhccCC--------CChHHHHHHHHHHhhcCCCcHHHHHH
Q 020150 168 ALKGLVQKTGFSMEDVLRKYIRYALNEKP--------FNPDLVVNLIQLRKASMLDDSQVAEI 222 (330)
Q Consensus 168 vLk~L~~KTGFs~~Ei~RKYirY~LnEr~--------F~~d~VaDLi~Lr~as~L~d~evaei 222 (330)
.|+.|..|.|-|..+|. |+|.|.-.. -+++-+.+-++.-...-||++|+++|
T Consensus 286 ~l~~iA~~~g~t~aqva---L~w~l~~~~v~~vI~G~~~~~~l~enl~a~~~~~Ls~ee~~~i 345 (353)
T 3erp_A 286 RLNELAARRGQKLSQMA---LAWVLRNDNVTSVLIGASKPSQIEDAVGMLANRRFSAAECAEI 345 (353)
T ss_dssp HHHHHHHHTTCCHHHHH---HHHHTTTSCCCEEEECCSSHHHHHHHHHGGGGCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHH---HHHHHhCCCCcEEEeCCCCHHHHHHHHHHhccCCCCHHHHHHH
Confidence 78999999999999997 667776543 36788888776554568999999876
No 49
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=28.21 E-value=12 Score=34.85 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=0.0
Q ss_pred hhhhhHHHHhcch
Q 020150 64 AEEVEVEVEEELP 76 (330)
Q Consensus 64 ~~~~e~e~e~e~~ 76 (330)
++|+|||+|++|.
T Consensus 302 ~~e~~ee~d~d~g 314 (319)
T 3iz5_s 302 KEEPEEESDGDLG 314 (319)
T ss_dssp -------------
T ss_pred cccccccccccCC
Confidence 3344455556664
No 50
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.90 E-value=52 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.087 Sum_probs=23.0
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 020150 196 PFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (330)
Q Consensus 196 ~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (330)
+|+..+=..|-.+|+..|||-.|+|+.+.
T Consensus 6 ~~~~~~~~~ik~~R~~~gltq~elA~~~g 34 (78)
T 3qq6_A 6 HHHHMIGQRIKQYRKEKGYSLSELAEKAG 34 (78)
T ss_dssp --CTTHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHcCCCHHHHHHHHC
Confidence 55666667888999999999999999874
No 51
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=27.44 E-value=1.3e+02 Score=23.58 Aligned_cols=67 Identities=6% Similarity=0.277 Sum_probs=42.1
Q ss_pred hCCChHH---HHHHHHHHHh------c--cCCCChHHHHHHHHH-HhhcCCC--cHHHHHHHHHHHHhhhh--ccCCeee
Q 020150 176 TGFSMED---VLRKYIRYAL------N--EKPFNPDLVVNLIQL-RKASMLD--DSQVAEILNEISRRFVR--EKGPVVM 239 (330)
Q Consensus 176 TGFs~~E---i~RKYirY~L------n--Er~F~~d~VaDLi~L-r~as~L~--d~evaeiL~E~s~Ri~~--~~G~vmm 239 (330)
.||+.+| |.++||.=.- . +=.|+.+++.++|.- -+-+|.- +-+++.|.+-.+.+|+. +..+|.+
T Consensus 1 sGYt~~EK~~IAk~~LiPkql~~~GL~~~~~~i~d~al~~iI~~YTREaGVRnLer~i~~i~RK~a~~i~~~~~~~~v~v 80 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEI 80 (94)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTCTTCCCEEE
T ss_pred CCCCHHHHHHHHHHhccHHHHHHhCCChhhceECHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcCCCCCeeE
Confidence 3777765 7888875432 2 234678888888762 1112221 34789999999999984 4455666
Q ss_pred ecc
Q 020150 240 NMS 242 (330)
Q Consensus 240 n~~ 242 (330)
+..
T Consensus 81 ~~~ 83 (94)
T 1qzm_A 81 NGD 83 (94)
T ss_dssp CTT
T ss_pred CHH
Confidence 544
No 52
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=27.28 E-value=58 Score=24.73 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=25.8
Q ss_pred chHHHHHHHhhCCChHHHHHHHHHHHhccC
Q 020150 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEK 195 (330)
Q Consensus 166 ~~vLk~L~~KTGFs~~Ei~RKYirY~LnEr 195 (330)
+..||.+.-+.|=|+.||+|.+|+=.|.|.
T Consensus 46 h~rlK~~Aa~~g~Smsdvvreli~~~L~~~ 75 (76)
T 1p94_A 46 HTRFKAACARKGTSITDVVNQLVDNWLKEN 75 (76)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 347889999999999999999998877654
No 53
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=26.71 E-value=74 Score=22.68 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccC
Q 020150 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKG 235 (330)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G 235 (330)
.+||+.|++ ..+.+++.=-+-|+ +..-|+|=+|+..+.+|-+..-+++..
T Consensus 7 ~~Il~~~l~----~~~~~~~vdl~~la-~~t~G~SGADi~~l~~eA~~~a~~~~~ 56 (83)
T 3aji_B 7 RLIFSTITS----KMNLSEEVDLEDYV-ARPDKISGADINSICQESGMLAVRENR 56 (83)
T ss_dssp HHHHHHHHT----TSCBCTTCCTHHHH-TSSCCCCHHHHHHHHHHHHHGGGTSCC
T ss_pred HHHHHHHhC----CCCCCcccCHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 467777664 33333322111122 234599999999999999988888753
No 54
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=26.35 E-value=25 Score=27.53 Aligned_cols=36 Identities=31% Similarity=0.180 Sum_probs=21.1
Q ss_pred HHHHhccCCCChHHHHHHHHHHhhcCC-CcHHHHHHHHHHHH
Q 020150 188 IRYALNEKPFNPDLVVNLIQLRKASML-DDSQVAEILNEISR 228 (330)
Q Consensus 188 irY~LnEr~F~~d~VaDLi~Lr~as~L-~d~evaeiL~E~s~ 228 (330)
||.+|+|.. += .+-.|++++|| +|.|+.-+|-=.+|
T Consensus 15 VW~~L~~~~--~~---s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 15 IWEALNGTE--GL---TQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHTTSS--CE---EHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CC---CHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 466777742 11 23356677777 77777766654444
No 55
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=25.19 E-value=83 Score=28.24 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeecccccchh
Q 020150 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKG 248 (330)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G~Te~G 248 (330)
..+++.-+|-+.+=+|-+.+.+| ++.|.+-++|..+|.+..--.|++-|.||- -|+|..-
T Consensus 21 ~~~~~~llr~la~Grpv~~~~LA------~~~g~~~~~v~~~L~~l~~~~~D~~G~Ivg--yp~S~~p 80 (220)
T 3f2g_A 21 ADLLVPLLRELAKGRPVSRTTLA------GILDWPAERVAAVLEQATSTEYDKDGNIIG--YGLTLRE 80 (220)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHH------HHHTCCHHHHHHHHHHCTTCEECTTSCEEE--SSEESSC
T ss_pred hHHHHHHHHHHhcCCCCCHHHHH------HHhCcCHHHHHHHHHhCCcEEECCCCCEEE--ecCCCCC
Confidence 35777777777788888888655 688999999999999998888999999854 4877653
No 56
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=25.14 E-value=1.9e+02 Score=21.71 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=29.7
Q ss_pred CchHHHHHHHhhCCChHHHHHHHHHHHh-c-cCCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 020150 165 NPPALKGLVQKTGFSMEDVLRKYIRYAL-N-EKPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (330)
Q Consensus 165 ~~~vLk~L~~KTGFs~~Ei~RKYirY~L-n-Er~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (330)
+...|+.|.+.+||+..+|-+=|-.|-. + ...-+.+.+..++.--.....++.++..+.+
T Consensus 2 ~~~el~~l~~~~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~ 63 (183)
T 1s6c_A 2 RPEGLEQLEAQTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFN 63 (183)
T ss_dssp ----CHHHHHHSSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3456788899999998887554444443 1 2233444444433221111245555555543
No 57
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=24.25 E-value=1.9e+02 Score=23.55 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=62.5
Q ss_pred hHHHHHHHhhCCChHHHHHHHHHHHhccCCCChH-----HHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeec
Q 020150 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPD-----LVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNM 241 (330)
Q Consensus 167 ~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d-----~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~ 241 (330)
-.++++...+|++..+|-|-| ++.+++-.|+.. --.=+..+=..+||++ ++.+.-.++.++..++. -+
T Consensus 70 ~~l~di~~~~~v~~~~i~~~~-~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~~~~-----~~ 142 (200)
T 1ais_B 70 RTLDEIADIARVDKKEIGRSY-RFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-KVRRRAIEILDEAYKRG-----LT 142 (200)
T ss_dssp CCHHHHHHHTTSCHHHHHHHH-HHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-HHHHHHHHHHHHHHHTT-----CC
T ss_pred CCHHHHHHHHCCCHHHHHHHH-HHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcC-----cc
Confidence 367788888999988887765 455666666522 2222444556788875 46555566666666543 24
Q ss_pred ccccchhhhhHHHHHHHHHhHhhhccchhhhccCCCccchhhcccchhhh
Q 020150 242 SGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDA 291 (330)
Q Consensus 242 ~G~Te~G~kRK~a~~aLF~KllyLsEl~ef~s~dssL~vkeiFGvTdeDa 291 (330)
.|.+..|+ |+.++|.-..-+.. + -+.=.|-++.|||+.+.
T Consensus 143 ~gr~P~~i----AaAaly~A~~~~~~-~-----~t~~ei~~~~~vs~~ti 182 (200)
T 1ais_B 143 SGKSPAGL----VAAALYIASLLEGE-K-----RTQREVAEVARVTEVTV 182 (200)
T ss_dssp TTSCHHHH----HHHHHHHHHHHTTC-C-----CCHHHHHHHHTCCHHHH
T ss_pred cCCCHHHH----HHHHHHHHHHHhCC-C-----CCHHHHHHHhCCCHHHH
Confidence 67777763 56665544222111 0 01124555778877554
No 58
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=24.24 E-value=74 Score=22.41 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=18.6
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 020150 197 FNPDLVVNLIQLRKASMLDDSQVAEILN 224 (330)
Q Consensus 197 F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (330)
+...+-..|-++|+..|||-.|+|+.+.
T Consensus 10 ~~~~~~~~l~~~r~~~glsq~~lA~~~g 37 (91)
T 1x57_A 10 VTLEVGKVIQQGRQSKGLTQKDLATKIN 37 (91)
T ss_dssp CCCHHHHHHHHHHHTTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3444555666777777777777777663
No 59
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.05 E-value=1.6e+02 Score=21.01 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhccCC----CChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 020150 169 LKGLVQKTGFSMEDVLRKYIRYALNEKP----FNPDLVVNLIQLRKASMLDDSQVAEILN 224 (330)
Q Consensus 169 Lk~L~~KTGFs~~Ei~RKYirY~LnEr~----F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (330)
+++|.+++|.|..-| ...||.++ .++++..-+.+.=+.+|...+.++..|+
T Consensus 3 ~~diA~~aGVS~sTV-----SrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l~ 57 (65)
T 1uxc_A 3 LDEIARLAGVSRTTA-----SYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR 57 (65)
T ss_dssp HHHHHHHHTSCHHHH-----HHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-------
T ss_pred HHHHHHHHCcCHHHH-----HHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 578999999996654 44677664 8888888777777777877776665553
No 60
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: f.1.4.1
Probab=24.04 E-value=88 Score=27.57 Aligned_cols=59 Identities=7% Similarity=0.055 Sum_probs=38.5
Q ss_pred hhCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccCCeeee
Q 020150 175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMN 240 (330)
Q Consensus 175 KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn 240 (330)
++-....++++.||.|.|..+-+..... -+.+=.-+++++.|+.++..+=++|-...-|
T Consensus 28 ~~~~~~~~Lv~DYI~yrL~q~g~~~~~~-------~~~p~~~~~~~~~Lr~vgdelE~~~~~~f~~ 86 (204)
T 2a5y_A 28 EPRLDIEGFVVDYFTHRIRQNGMEWFGA-------PGLPSGVQPEHEMMRVMGTIFEKKHAENFET 86 (204)
T ss_dssp SGGGCHHHHHHHHHHHHHHTTTCCCTTC-------BCCTTCCCHHHHHHHHHHHHHHHHTCTTHHH
T ss_pred cccHhHHHHHHHHHHHHHccCCCCcccC-------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445668999999999999876621000 0111134588888988888877777655433
No 61
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=24.00 E-value=1.7e+02 Score=22.19 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=22.7
Q ss_pred CCCCchHHHHHHHhhCCChHHHHHHHHHHH
Q 020150 162 DAVNPPALKGLVQKTGFSMEDVLRKYIRYA 191 (330)
Q Consensus 162 da~~~~vLk~L~~KTGFs~~Ei~RKYirY~ 191 (330)
..+....|+.|...|+|+..||-+=|-.|-
T Consensus 6 s~l~~~~l~~l~~~~~~~~~~i~~~f~~fd 35 (193)
T 1bjf_A 6 SKLRPEVMQDLLESTDFTEHEIQEWYKGFL 35 (193)
T ss_dssp CCCCHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 346777999999999999998865444443
No 62
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=23.63 E-value=1.6e+02 Score=26.21 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=42.1
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhccC--------CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 020150 168 ALKGLVQKTGFSMEDVLRKYIRYALNEK--------PFNPDLVVNLIQLRKASMLDDSQVAEILNEISR 228 (330)
Q Consensus 168 vLk~L~~KTGFs~~Ei~RKYirY~LnEr--------~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~ 228 (330)
.|+.|..|.|-|..+|. |+|.|.-. .-+++-+.+-++.-...-|+++|+++| +++.+
T Consensus 269 ~l~~iA~~~g~t~aqva---L~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~~~Ls~e~~~~i-~~~~~ 333 (346)
T 3n6q_A 269 LLNEMAQQRGQSMAQMA---LSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQI-DQHIA 333 (346)
T ss_dssp HHHHHHHHTTCCHHHHH---HHHHTSSTTCSEEEECCSSHHHHHHHHGGGGCCCCCHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCcCHHHHH---HHHHHhCCCCcEEEcCCCCHHHHHHHHhhccCCCCCHHHHHHH-HHHHh
Confidence 78899999999999997 66777643 247888888776533457999998865 44443
No 63
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.62 E-value=1.2e+02 Score=17.92 Aligned_cols=28 Identities=4% Similarity=0.023 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 020150 196 PFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (330)
Q Consensus 196 ~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (330)
.++++.-..++.+. ..|++-.|||+.|+
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~lg 32 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKIS 32 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHHC
Confidence 46777766666665 56899999998885
No 64
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.47 E-value=1.1e+02 Score=24.82 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=25.2
Q ss_pred hHHHHHHHHH-HhhcCCCcHHHHHHHHHHHHhhhh
Q 020150 199 PDLVVNLIQL-RKASMLDDSQVAEILNEISRRFVR 232 (330)
Q Consensus 199 ~d~VaDLi~L-r~as~L~d~evaeiL~E~s~Ri~~ 232 (330)
|..+...+.. ....|++++++..++.+-++|+|.
T Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~Na~rl~~ 254 (265)
T 2gzx_A 220 PARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN 254 (265)
T ss_dssp GGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 4445444432 334799999999999999999995
No 65
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=22.92 E-value=78 Score=27.05 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccC
Q 020150 179 SMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKG 235 (330)
Q Consensus 179 s~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G 235 (330)
+..++.+.||.|.|+.+-+.-.. ..+++=.-+++++.|+.++..+=++|-
T Consensus 12 ~~~~Lv~DYI~yrL~~~g~~~~~-------~~~~~~~~~~~~~~Lr~vgdelE~~~~ 61 (175)
T 1ohu_A 12 DIEGFVVDYFTHRIRQNGMEWFG-------APGLPSGVQPEHEMMRVMGTIFEKKHA 61 (175)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCTT-------CCCCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCCCCccc-------CCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 45789999999999987663100 001111244777777777766555443
No 66
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=22.91 E-value=1.4e+02 Score=20.48 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=35.1
Q ss_pred hhHHHHHhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHHHhccC--CCChHHHHHHHHHHhhcCCCcHHH
Q 020150 151 KTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK--PFNPDLVVNLIQLRKASMLDDSQV 219 (330)
Q Consensus 151 kSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY~LnEr--~F~~d~VaDLi~Lr~as~L~d~ev 219 (330)
+.|.+.+..-|... ..++|..++|.+.. ||.-..|-+ ..+ +..|.+|=.++|++-.++
T Consensus 15 ~~~g~~l~~~R~~~---sq~~lA~~~gis~~-----~is~~E~g~~~~p~---~~~l~~ia~~l~v~~~~l 74 (86)
T 2ofy_A 15 QRLGELLRSARGDM---SMVTVAFDAGISVE-----TLRKIETGRIATPA---FFTIAAVARVLDLSLDDV 74 (86)
T ss_dssp HHHHHHHHHHHTTS---CHHHHHHHHTCCHH-----HHHHHHTTCCSSCB---HHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHC---CHHHHHHHhCCCHH-----HHHHHHcCCCCCCC---HHHHHHHHHHhCCCHHHH
Confidence 34444444444444 46799999999854 343334433 344 455667778899886654
No 67
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=22.24 E-value=95 Score=25.63 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=20.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhhhh
Q 020150 210 KASMLDDSQVAEILNEISRRFVR 232 (330)
Q Consensus 210 ~as~L~d~evaeiL~E~s~Ri~~ 232 (330)
...|++.+++++++.+-++|+|.
T Consensus 239 ~~~g~~~e~~~~~~~~Na~rl~~ 261 (264)
T 1xwy_A 239 HWRGEDAAWLAATTDANVKTLFG 261 (264)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHCcCHHHHHHHHHHHHHHHhC
Confidence 44599999999999999999984
No 68
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=22.21 E-value=76 Score=23.41 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=25.6
Q ss_pred hhhhhhcchhhHHhhHHHHHhcC--CCCCCchHHHHHHHhhCCChHHH
Q 020150 138 KRKKLVNKNAMVCKTIDELFQKG--GDAVNPPALKGLVQKTGFSMEDV 183 (330)
Q Consensus 138 KRkR~VnKNa~LvkSLdeyfp~g--Rda~~~~vLk~L~~KTGFs~~Ei 183 (330)
+|++...-...-+..|.++|... .--.+...-..|..+||.+...|
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV 54 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQI 54 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHh
Confidence 34444444555666666666543 33344446666666666666555
No 69
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=21.98 E-value=88 Score=25.03 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhh-----hhccCCeeeeccc
Q 020150 198 NPDLVVNLIQLRKASMLDDSQVAEILNEISRRF-----VREKGPVVMNMSG 243 (330)
Q Consensus 198 ~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri-----~~~~G~vmmn~~G 243 (330)
|-+++.+|++.-.-||-++.+|++.|.+.-+.+ ++++|+|+.-+.|
T Consensus 11 d~elL~~Lv~ipS~sg~E~~~v~~~l~~~l~~~G~~v~~D~~GNlia~~~g 61 (354)
T 2wzn_A 11 DWKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDKLGNVIAHFKG 61 (354)
T ss_dssp CHHHHHHHHHSCCBTTCGGGTHHHHHHHHHHTTSSEEEECTTCCEEEEECC
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHcCCEEEEeCCCeEEEEECC
Confidence 446777888888778876667777776665543 3568999877654
No 70
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=21.83 E-value=2.2e+02 Score=23.46 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=20.3
Q ss_pred HhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHHH
Q 020150 157 FQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYA 191 (330)
Q Consensus 157 fp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY~ 191 (330)
+.+.+..+....|+.+...++|+..||-+=|-.|-
T Consensus 67 le~~~~~l~~e~l~~l~~~~~~s~~ei~~l~~~fd 101 (256)
T 2jul_A 67 LELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFK 101 (256)
T ss_dssp ---------CTHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hccccccCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44555667777999999999999988765444443
No 71
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=21.64 E-value=2e+02 Score=19.68 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=27.8
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 020150 170 KGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNE 225 (330)
Q Consensus 170 k~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E 225 (330)
++|..+.|.|..-| -+|.-..+..+.+ .+..|=+++|.+.+++.+-|-+
T Consensus 29 ~~lA~~~gvs~~~i----s~~e~g~~~~~~~---~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 29 ESVADKMGMGQSAV----AALFNGINALNAY---NAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp HHHHHHTTSCHHHH----HHHHTTSSCCCHH---HHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHHHHhCcCHHHH----HHHHcCCCCCCHH---HHHHHHHHhCCCHHHHhHHHHh
Confidence 34555555553322 2333345566664 5566677899988876655543
No 72
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=21.59 E-value=1.3e+02 Score=26.15 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=30.9
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHHHhccCC
Q 020150 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP 196 (330)
Q Consensus 149 LvkSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~ 196 (330)
+.+.|-+.|.+++ +..+..+.|..+.|.+. +.+|..++|+.++..
T Consensus 142 ~~~~i~~~~~~~g--~~pp~~~dl~~~l~~~~-~~~~~~l~~l~~~g~ 186 (258)
T 1lva_A 142 LLKDLEDKYRVSR--WQPPSFKEVAGSFNLDP-SELEELLHYLVREGV 186 (258)
T ss_dssp HHHHHHHHHHHHT--TSCCBHHHHHHHTTCCH-HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCC--CCCCCHHHHHhHhCCCH-HHHHHHHHHHHHCCC
Confidence 4556666665433 55667888888888875 445788888888763
No 73
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=21.52 E-value=2.2e+02 Score=25.33 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=40.7
Q ss_pred hHHHHHHHhhCCChHHHHHHHHHHHhccCC--------CChHHHHHHHHHHhhcCCCcHHHHHH
Q 020150 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKP--------FNPDLVVNLIQLRKASMLDDSQVAEI 222 (330)
Q Consensus 167 ~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~--------F~~d~VaDLi~Lr~as~L~d~evaei 222 (330)
..|+.|..|.|-|..+|. |+|.|.-.. -+++-+.+-++.-. .-|+++|+++|
T Consensus 246 ~~l~~ia~~~g~t~aqva---L~w~l~~~~v~~~I~g~~~~~~l~en~~a~~-~~L~~e~~~~l 305 (337)
T 3v0s_A 246 YRIEALSQKHGCTPVQLA---LAWVLHQGEDVVPIPGTTKIKNLHNNVGALK-VXLTKEDLKEI 305 (337)
T ss_dssp HHHHHHHHHTTSCHHHHH---HHHHHTTCTTBCCCCCCSCHHHHHHHHHGGG-CCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHH---HHHHHhCCCCeEEEcCCCCHHHHHHHHHHhc-cCCCHHHHHHH
Confidence 589999999999999997 667776542 37888888876543 37999999775
No 74
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=21.48 E-value=2.9e+02 Score=21.43 Aligned_cols=60 Identities=7% Similarity=0.122 Sum_probs=38.4
Q ss_pred hHHhhHHHHHhcCCCCCCchHHHHHHHhhCCChHHH---HHHHHHHHh-ccCCCChHHHHHHHH
Q 020150 148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV---LRKYIRYAL-NEKPFNPDLVVNLIQ 207 (330)
Q Consensus 148 ~LvkSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei---~RKYirY~L-nEr~F~~d~VaDLi~ 207 (330)
.+.+-|..++.+.+-.++..+++.|...++-+..++ +++-..|++ +.+.-+.+.|..+++
T Consensus 178 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp GHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHhh
Confidence 344455555555555677788888888888776553 456666664 345577766666553
No 75
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.35 E-value=1.7e+02 Score=18.81 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=26.3
Q ss_pred HHHHHHhhCCChHHHHH------HHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHH
Q 020150 169 LKGLVQKTGFSMEDVLR------KYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQV 219 (330)
Q Consensus 169 Lk~L~~KTGFs~~Ei~R------KYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~ev 219 (330)
|+.+..+.|+|..|+-+ .+|.-..+-+.-.+.. +..|-+++|++-+++
T Consensus 6 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~---l~~la~~l~~~~~~l 59 (69)
T 1r69_A 6 VKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRF---LPELASALGVSVDWL 59 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTT---HHHHHHHTTCCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchH---HHHHHHHHCcCHHHH
Confidence 44455555555555443 3454445544433322 777778888876554
No 76
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=21.32 E-value=1.2e+02 Score=27.47 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeecccccc-hhhhhHHHHHHHHHhHhhh-ccchhhh
Q 020150 198 NPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSE-KGFKRKLAVQALFGKVFYL-SELPEFC 272 (330)
Q Consensus 198 ~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G~Te-~G~kRK~a~~aLF~KllyL-sEl~ef~ 272 (330)
+++.++-+.++=.++|+..++|+.++-++++--+.-=----+++.|-.+ .|+-|..-+.. ..+ . +-|+.||
T Consensus 35 T~eei~~I~~~l~~lGvp~~~v~~~~~~la~~Cad~gSS~~~~~~G~~~~~~i~~~~la~~-ik~---~~~TLRqfC 107 (226)
T 4dox_A 35 SQEQLKSVSTLMVAAKVPAASVTTVALELVNFCYDNGSSAYTTVTGPSSIPEISLAQLASI-VKA---SGTSLRKFC 107 (226)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHCCCTTCCCCSBCSSTTCBHHHHHHH-HHH---TTCCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCCcccccCCcCCCCCccHHHHHHH-HHH---hCCCHHHHH
Confidence 3455555555556799999999999999999888877777788888876 66766544322 222 2 3467777
No 77
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}
Probab=21.28 E-value=69 Score=28.26 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=21.2
Q ss_pred hcCCCcHHHHHHHHHHHHhhhhc
Q 020150 211 ASMLDDSQVAEILNEISRRFVRE 233 (330)
Q Consensus 211 as~L~d~evaeiL~E~s~Ri~~~ 233 (330)
.++|++++++.|+.+-|+|+|++
T Consensus 283 ~l~l~~~~~~~i~~~NA~rl~~~ 305 (312)
T 3ij6_A 283 DLTISDKDKQKIFHDNYYSLIKE 305 (312)
T ss_dssp TSSSCHHHHHHHHTHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHHHHHHHhC
Confidence 45999999999999999999986
No 78
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=20.90 E-value=1.3e+02 Score=22.14 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhccCC
Q 020150 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGP 236 (330)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~ 236 (330)
.+||+.|++ ..+.++|.=-+-|+ +..-|+|=+|++.+.+|-+-.-+++..+
T Consensus 7 ~~Il~~~~~----~~~~~~dvdl~~lA-~~t~G~SGADl~~l~~eAa~~a~r~~~~ 57 (88)
T 3vlf_B 7 ANIFRIHSK----SMSVERGIRWELIS-RLCPNSTGAELRSVCTEAGMFAIRARRK 57 (88)
T ss_dssp HHHHHHHHT----TSCBCSCCCHHHHH-HTCSSCCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHC----CCCCCCccCHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 577877664 33443332112222 2456899999999999999888887553
No 79
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=20.61 E-value=93 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.9
Q ss_pred chHHHHHHHhhCCChHHHHHHHHHHHhc
Q 020150 166 PPALKGLVQKTGFSMEDVLRKYIRYALN 193 (330)
Q Consensus 166 ~~vLk~L~~KTGFs~~Ei~RKYirY~Ln 193 (330)
...|+.|+.+-|-|...+.|++|+=+|+
T Consensus 10 Y~~LkelAe~EGvSvSav~RkLL~EyL~ 37 (106)
T 4hv0_A 10 YEFLKKKAKEEGTSVPAVIRKILKEYFG 37 (106)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 4579999999999999999999987665
No 80
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.49 E-value=98 Score=26.98 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 020150 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEI 226 (330)
Q Consensus 196 ~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~ 226 (330)
.++++.|.++|-==.--|++.+||.-+|++.
T Consensus 27 ~~~~eev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 27 EYTVEEIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 3688888888754445899999999999984
No 81
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=20.47 E-value=98 Score=26.87 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=25.6
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 020150 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEI 226 (330)
Q Consensus 196 ~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~ 226 (330)
.+++|.|.++|-==.--|++.+||+-+|++.
T Consensus 27 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 27 KLSSESVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp CSCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 3688888888765455899999999999985
No 82
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=20.45 E-value=1.1e+02 Score=25.16 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhccCCC
Q 020150 181 EDVLRKYIRYALNEKPF 197 (330)
Q Consensus 181 ~Ei~RKYirY~LnEr~F 197 (330)
..+.+.||.|.|++..+
T Consensus 15 ~~L~~Dyi~y~l~~~~~ 31 (157)
T 2vof_A 15 HSLAEHYLQYVLQVPAF 31 (157)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 46889999999998776
No 83
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=20.42 E-value=51 Score=28.30 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=38.0
Q ss_pred hhhhhcchhhHHhhHHHHHhcCCCCCCch--HHHHHHHhhCCChHHHHHHHHH-HHhccCCCChHHHHHHHHHHhhcCC
Q 020150 139 RKKLVNKNAMVCKTIDELFQKGGDAVNPP--ALKGLVQKTGFSMEDVLRKYIR-YALNEKPFNPDLVVNLIQLRKASML 214 (330)
Q Consensus 139 RkR~VnKNa~LvkSLdeyfp~gRda~~~~--vLk~L~~KTGFs~~Ei~RKYir-Y~LnEr~F~~d~VaDLi~Lr~as~L 214 (330)
|+..+.+|..+++.+-+-+.++.+.+... ..+-+...+|.+. |++++++. +...-.+.+++.+..++.+=...|+
T Consensus 243 ~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (341)
T 3un6_A 243 RGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSR-DVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHL 320 (341)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSSCH-HHHHHHHHTEECSCCCCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCH-HHHHHHhcCCcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 55666777777776666555544433332 2255556667664 44455442 2222223455554444444444444
No 84
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.25 E-value=2.5e+02 Score=22.59 Aligned_cols=55 Identities=13% Similarity=0.264 Sum_probs=30.6
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhc---------cCCCChHHHHHHHHHH--hhcCCCcHHHHHHHH
Q 020150 169 LKGLVQKTGFSMEDVLRKYIRYALN---------EKPFNPDLVVNLIQLR--KASMLDDSQVAEILN 224 (330)
Q Consensus 169 Lk~L~~KTGFs~~Ei~RKYirY~Ln---------Er~F~~d~VaDLi~Lr--~as~L~d~evaeiL~ 224 (330)
..++.+.+|-|.. -+|-|-+--|= -|-|+++.|..|-.++ +.+|++=+||+++|.
T Consensus 19 I~evA~~~gvs~~-tLR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 19 IGQVAKMQHLTIS-QIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp HHHHHHHTTCCHH-HHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHH-HHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4566666776643 34555442221 1336666666554332 346777777777776
No 85
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=20.24 E-value=1.1e+02 Score=26.15 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=6.3
Q ss_pred hcCCCcHHHHHHH
Q 020150 211 ASMLDDSQVAEIL 223 (330)
Q Consensus 211 as~L~d~evaeiL 223 (330)
.+|+++++|+.++
T Consensus 85 ~~Gls~~~i~~~l 97 (270)
T 3m66_A 85 SKNFSKADVAQMV 97 (270)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHH
Confidence 3455555554444
No 86
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=20.03 E-value=1.1e+02 Score=26.69 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 020150 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEI 226 (330)
Q Consensus 196 ~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~ 226 (330)
.+++|.|.++|-==.--|++.+||+-||++.
T Consensus 29 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 29 HMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 3688888888765555899999999999974
No 87
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=20.02 E-value=1.7e+02 Score=25.66 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=39.8
Q ss_pred CchHHHHHHHhhCCChHHHHHHHHHHHhcc------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 020150 165 NPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (330)
Q Consensus 165 ~~~vLk~L~~KTGFs~~Ei~RKYirY~LnE------r~F~~d~VaDLi~Lr~as~L~d~evaei 222 (330)
..+.|+.|..|.|-|..+|. |+|+|.- +.-+++-+.+-++.-. .-|+++|+++|
T Consensus 238 ~~~~l~~ia~~~g~t~aqva---L~w~l~~~~~~I~g~~~~~~l~en~~~~~-~~L~~e~~~~l 297 (324)
T 3ln3_A 238 NDPVLCDVAXXNXRSPALIA---LRYLIQRGIVPLAQSFXENEMRENLQVFG-FQLSPEDMXTL 297 (324)
T ss_dssp GCHHHHHHHHHHTSCHHHHH---HHHHHHTTCEEEECCSSHHHHHHHGGGGG-CCCCHHHHHHH
T ss_pred cCHHHHHHHHhhCCCHHHHH---HHHHHhCCCEEEeCCCCHHHHHHHHhhCC-CCcCHHHHHHH
Confidence 34699999999999999998 5666653 2346677777665432 47999999765
Done!