BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020151
         (330 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q09MP3|R51A2_HUMAN RAD51-associated protein 2 OS=Homo sapiens GN=RAD51AP2 PE=1 SV=1
          Length = 1159

 Score = 33.5 bits (75), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 41  ENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELK 100
           EN  SSS+  +S  QN  S  +   S   D  T  + +F  D  SK++S Y+  IA +  
Sbjct: 224 ENNISSSVLKISKSQNQPSLEIAKPSYFRDSGTISVPQFPMDLNSKMSSVYLKEIAKKKN 283

Query: 101 D 101
           D
Sbjct: 284 D 284


>sp|A8EYU2|PNP_RICCK Polyribonucleotide nucleotidyltransferase OS=Rickettsia canadensis
           (strain McKiel) GN=pnp PE=3 SV=1
          Length = 747

 Score = 33.1 bits (74), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 70  DDVTFRIKEFDRDHASKLASDYITAIADELKDDPL----VVCVLDGNMLKLFLGNEDDFT 125
           DD T  +   DRD   K+ASD I AIA E +   +    V  +LD      +LGN+D F 
Sbjct: 592 DDGTVSVYAADRDKL-KIASDKIKAIAIEPEIGEIFNGTVTKILDSGAFINYLGNKDGFV 650

Query: 126 MLAE 129
            ++E
Sbjct: 651 HISE 654


>sp|Q8R9V4|ACKA_THETN Acetate kinase OS=Thermoanaerobacter tengcongensis (strain DSM
           15242 / JCM 11007 / NBRC 100824 / MB4) GN=ackA PE=3 SV=1
          Length = 401

 Score = 32.7 bits (73), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query: 164 FSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSK 223
            +E   +ND L  H AEG+E++   +  +  ++ +Q +++ L DK I +I ++K ID   
Sbjct: 30  LAERIGINDSLLTHQAEGKEKVKIQRDMKNHKEAIQLVLEVLVDKEIGVIKDMKEIDAVG 89

Query: 224 LRMV 227
            R+V
Sbjct: 90  HRVV 93


>sp|Q9ZD43|PNP_RICPR Polyribonucleotide nucleotidyltransferase OS=Rickettsia prowazekii
           (strain Madrid E) GN=pnp PE=3 SV=1
          Length = 745

 Score = 32.0 bits (71), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 70  DDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--------FLGNE 121
           DD T  I   DRD   K+A D I AIA E    P +  + +G ++K+        +LGN+
Sbjct: 592 DDGTVSIYASDRDKI-KIALDKIKAIAVE----PEIGEIFNGTVMKVLDSGAFINYLGNK 646

Query: 122 DDFTMLAE 129
           D F  ++E
Sbjct: 647 DGFVHISE 654


>sp|O07021|LUTB_BACSU Lactate utilization protein B OS=Bacillus subtilis (strain 168)
           GN=lutB PE=1 SV=2
          Length = 479

 Score = 31.6 bits (70), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 19/90 (21%)

Query: 155 MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQ---AQFTELLRQVLQDIVDALADKHII 211
           MG+E  VP FSEF  L  +L +        +GQ   +  T L    L+  VD   + H++
Sbjct: 240 MGMERIVPSFSEFEVLVSMLTRSA------VGQRLTSYITALTGPKLEGEVDGPEEFHLV 293

Query: 212 IIPNIKIIDGSKLRMVSKMLSTKMKAQLQC 241
           I+ N +          S +L T+ ++ LQC
Sbjct: 294 IVDNGR----------SNILGTEFQSVLQC 313


>sp|C3M9X0|META_RHISN Homoserine O-succinyltransferase OS=Rhizobium sp. (strain NGR234)
           GN=metA PE=3 SV=1
          Length = 307

 Score = 31.6 bits (70), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 49  FGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCV 108
           FG+   QNLK +++ +++G  DD    +  +     + +  D + ++   ++   + VC+
Sbjct: 165 FGVYRHQNLKPSSV-YLNGFSDDFAVPVSRWTEVRRADI--DRVPSLEILMESKEMGVCL 221

Query: 109 LD---GNMLKLFLGNEDDFTMLAENLFADLD 136
           +    GN L +F   E D T L++  F D+D
Sbjct: 222 VHEKKGNRLYMFNHVEYDSTSLSDEYFRDVD 252


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,978,332
Number of Sequences: 539616
Number of extensions: 5018241
Number of successful extensions: 13656
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 13648
Number of HSP's gapped (non-prelim): 21
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)