BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020152
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 24/280 (8%)
Query: 32 SIPLIDLSNPDSKNL---------LVKACEEFGFFKVINHGVPLESISRLESEAIRFFSL 82
+P IDL N +S + L KA ++G +INHG+P + + R++ FFSL
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 83 PFSEKEKSGPPSPFG----YGNKCIGR-NGDVGWVEYLLLNTNQDSNSSLG---NNPDQF 134
EKEK G YG+K +G + W +Y + L P +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 135 RFALSEYISAVKRMACEILELMADGLKIQPRNVLSKLLMDEQSDSVFRLNHYP--PRPDR 192
A SEY ++ +A ++ + ++ GL ++P + ++ E+ ++N+YP P+P+
Sbjct: 166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPEL 225
Query: 193 ISNLIGFGEHTDPQIISVLRSNNTSGLQISLREGSWISVPPDEDSFFINVGDSLQVLTNG 252
+G HTD ++ + N GLQ+ EG W++ DS +++GD+L++L+NG
Sbjct: 226 A---LGVEAHTDVSALTFILHNMVPGLQL-FYEGKWVTAKCVPDSIVMHIGDTLEILSNG 281
Query: 253 RFKSVKHRVLANSLKSRVSMIYFGGPPLSERI-APLPSLM 291
++KS+ HR L N K R+S F PP + + PLP ++
Sbjct: 282 KYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV 321
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 24/280 (8%)
Query: 32 SIPLIDLSNPDSKNL---------LVKACEEFGFFKVINHGVPLESISRLESEAIRFFSL 82
+P IDL N +S + L KA ++G +INHG+P + + R++ FFSL
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104
Query: 83 PFSEKEKSGPPSPFG----YGNKCIGR-NGDVGWVEYLLLNTNQDSNSSLG---NNPDQF 134
EKEK G YG+K +G + W +Y + L P +
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 164
Query: 135 RFALSEYISAVKRMACEILELMADGLKIQPRNVLSKLLMDEQSDSVFRLNHYP--PRPDR 192
A SEY ++ +A ++ + ++ GL ++P + ++ E+ ++N+YP P+P+
Sbjct: 165 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPEL 224
Query: 193 ISNLIGFGEHTDPQIISVLRSNNTSGLQISLREGSWISVPPDEDSFFINVGDSLQVLTNG 252
+G HTD ++ + N GLQ+ EG W++ DS +++GD+L++L+NG
Sbjct: 225 A---LGVEAHTDVSALTFILHNMVPGLQL-FYEGKWVTAKCVPDSIVMHIGDTLEILSNG 280
Query: 253 RFKSVKHRVLANSLKSRVSMIYFGGPPLSERI-APLPSLM 291
++KS+ HR L N K R+S F PP + + PLP ++
Sbjct: 281 KYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV 320
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 24/280 (8%)
Query: 32 SIPLIDLSNPDSKNL---------LVKACEEFGFFKVINHGVPLESISRLESEAIRFFSL 82
+P IDL N +S + L KA ++G +INHG+P + R++ FFSL
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSL 105
Query: 83 PFSEKEKSGPPSPFG----YGNKCIGR-NGDVGWVEYLLLNTNQDSNSSLG---NNPDQF 134
EKEK G YG+K +G + W +Y + L P +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 135 RFALSEYISAVKRMACEILELMADGLKIQPRNVLSKLLMDEQSDSVFRLNHYP--PRPDR 192
A SEY ++ +A ++ + ++ GL ++P + ++ E+ ++N+YP P+P+
Sbjct: 166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPEL 225
Query: 193 ISNLIGFGEHTDPQIISVLRSNNTSGLQISLREGSWISVPPDEDSFFINVGDSLQVLTNG 252
+G HTD ++ + N GLQ+ EG W++ DS ++GD+L++L+NG
Sbjct: 226 A---LGVEAHTDVSALTFILHNXVPGLQL-FYEGKWVTAKCVPDSIVXHIGDTLEILSNG 281
Query: 253 RFKSVKHRVLANSLKSRVSMIYFGGPPLSERI-APLPSLM 291
++KS+ HR L N K R+S F PP + + PLP +
Sbjct: 282 KYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXV 321
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 137/267 (51%), Gaps = 13/267 (4%)
Query: 50 ACEEFGFFKVINHGVPLESISRLESEAIRFFSLPFSEKEKSGPPSPFGYGNKCIGRNGDV 109
ACE +GFF+++NHG+P E +E + ++ K S G + D
Sbjct: 27 ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQA--EVTDX 84
Query: 110 GWVEYLLLNTNQDSN-SSLGNNPDQFRFALSEYISAVKRMACEILELMADGLKIQPRNVL 168
W L SN S + + +++R ++ ++++A E+L+L+ + L ++ +
Sbjct: 85 DWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLK 144
Query: 169 SKLLMDEQSDSVFRLNHYPP--RPDRISNLIGFGEHTDPQ-IISVLRSNNTSGLQISLRE 225
+ + + ++++YPP +PD I G HTD II + + + SGLQ+ L++
Sbjct: 145 NAFYGSKGPNFGTKVSNYPPCPKPDLIK---GLRAHTDAGGIILLFQDDKVSGLQL-LKD 200
Query: 226 GSWISVPPDEDSFFINVGDSLQVLTNGRFKSVKHRVLANSLKSRVSMIYFGGPPLSERIA 285
G WI VPP S +N+GD L+V+TNG++KSV HRV+A +R S+ F P I
Sbjct: 201 GQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIY 260
Query: 286 PLPSLMKNPEQ---SLYKEFTWFEYKR 309
P P+L++ + +Y +F + +Y +
Sbjct: 261 PAPALVEKEAEENKQVYPKFVFDDYXK 287
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 115/265 (43%), Gaps = 25/265 (9%)
Query: 36 IDLSNPDSKNLLVKACEEFGFFKVINHGVPLESISRLESEAIRFFSLPFSEKEKSGPPSP 95
ID DS V++ E GF + NH + E + R+ +E FF+ + +
Sbjct: 7 IDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETH 66
Query: 96 FGYGNKCIGRNGDVGWV----EYLLLNTNQDSNSSLGNNPDQFRFALSEYISAVKRMACE 151
G+ I V EY + G PD R + Y +A E
Sbjct: 67 DGFFPASISETAKGHTVKDIKEYYHV-------YPWGRIPDSLRANILAYYEKANTLASE 119
Query: 152 ILELMA----DGLKIQPRNVLSKLLMDEQSDSVFRLNHYPPRP-DRISNLIGFGEHTDPQ 206
+LE + D +K + L + + + ++ R+ HYPP D I H D
Sbjct: 120 LLEWIETYSPDEIKAKFSIPLPEXIANSHK-TLLRILHYPPXTGDEEXGAIRAAAHEDIN 178
Query: 207 IISVLRSNNTSGLQISLREGSWISVPPDEDSFFINVGDSLQVLTNGRFKSVKHRVL---- 262
+I+VL + N GLQ+ ++GSW+ VP D + IN+GD LQ ++G F S HRV+
Sbjct: 179 LITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEG 238
Query: 263 ANSLKSRVSMIYFGGPP----LSER 283
+ KSR+S+ F P LSER
Sbjct: 239 TDKTKSRISLPLFLHPHPSVVLSER 263
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 134 FRFALSEYISAVKRMACEILELMADGLKIQPRNVLSKLLMDEQSDSVFRLNHYPPRPDRI 193
F+ +S +++ ++LE +A LK++ R+ + D +SV RL HYPP P
Sbjct: 127 FKHDVSWLYNSLDGXGGKVLEAIATYLKLE-RDFFKPTVQD--GNSVLRLLHYPPIPKDA 183
Query: 194 SNLIGFGEHTDPQIISVLRSNNTSGLQISLREGSWISVPPDEDSFFINVGDSLQVLTNGR 253
+ + G H D I++L GL++ R+G W+ + P IN+GD L+ LTN
Sbjct: 184 TGVRA-GAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNV 242
Query: 254 FKSVKHRVL 262
S HRV+
Sbjct: 243 LPSTVHRVV 251
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 197 IGFGEHTDPQIISVLRSNNTSGLQISLREGSWISVPPDEDSFFINVGDSLQVLTNGRFKS 256
+ F H D +I+VL +N LQ+ G + + D+ + IN G + LTN +K+
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADDTGYLINCGSYMAHLTNNYYKA 267
Query: 257 VKHRV 261
HRV
Sbjct: 268 PIHRV 272
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 197 IGFGEHTDPQIISVLRSNNTSGLQISLREGSWISVPPDEDSFFINVGDSLQVLTNGRFKS 256
+ F H D +I+VL +N LQ+ G + + D+ + IN G + LTN +K+
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADDTGYLINCGSYMAHLTNNYYKA 267
Query: 257 VKHRV 261
HRV
Sbjct: 268 PIHRV 272
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 112 VEYLLLNTNQDSNSSLGNN----PDQFRFALSEYISAVKRMACEILELMADGLKIQP--R 165
+E +L +D G PD+ R A++E ++ R A LE+MAD ++ +
Sbjct: 170 IEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGK 229
Query: 166 NVLSKLLMDEQSDSVFRLNHYPPRPDRISNLI 197
VL L+ E + R + + DR +LI
Sbjct: 230 RVLKPELLTEIAGE--RSARFDNKGDRFYDLI 259
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 180 VFRLNHYPPRPDRIS---NLIGFGEHTDPQIISVLRSNNTSGLQISLRE---GSWISVPP 233
+ R ++P P+ S + H D ++++++ + +SL+ G++ +P
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 234 DEDSFFINVGDSLQVLTNGRFKSVKHRVLAN-----SLKSRVSMIYF 275
D+ + G ++T G+ K+ +H V A + SR S ++F
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFF 264
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 180 VFRLNHYPPRPDRIS---NLIGFGEHTDPQIISVLRSNNTSGLQISLRE---GSWISVPP 233
+ R ++P P+ S + H D ++++++ + +SL+ G++ +P
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 234 DEDSFFINVGDSLQVLTNGRFKSVKHRVLAN-----SLKSRVSMIYFGGP 278
D+ + G ++T G+ K+ +H V A + SR S ++F P
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRP 267
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 180 VFRLNHYPPRPDRIS---NLIGFGEHTDPQIISVLRSNNTSGLQISLRE---GSWISVPP 233
+ R ++P P+ S + H D ++++++ + +SL+ G++ +P
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 234 DEDSFFINVGDSLQVLTNGRFKSVKHRVLAN-----SLKSRVSMIYFGGP 278
D+ + G ++T G+ K+ +H V A + SR S ++F P
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRP 267
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 180 VFRLNHYPPRPDRIS---NLIGFGEHTDPQIISVLRSNNTSGLQISLRE---GSWISVPP 233
+ R ++P P+ S + H D ++++++ + +SL+ G++ +P
Sbjct: 178 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 237
Query: 234 DEDSFFINVGDSLQVLTNGRFKSVKHRVLAN-----SLKSRVSMIYF 275
D+ + G ++T G+ K+ +H V A + SR S ++F
Sbjct: 238 RPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFF 284
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 69 ISRLESEAIRFFSLPFSEKEKSGPPSPFGYGNKCIG 104
I++ ++ ++ F P + + PP P Y C+G
Sbjct: 287 IAKSRNDKLQLFGFPIDRRARXKPPIPTAYFGNCVG 322
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 69 ISRLESEAIRFFSLPFSEKEKSGPPSPFGYGNKCIG 104
I++ ++ ++ F P + + PP P Y C+G
Sbjct: 287 IAKSRNDKLQLFGFPIDRRARMKPPIPTAYFGNCVG 322
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 180 VFRLNHYPPRPDRIS---NLIGFGEHTDPQIISVLRSNNTSGLQISLRE---GSWISVPP 233
+ R ++P P+ S + H D ++++++ + +SL+ G++ +P
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 234 DEDSFFINVGDSLQVLTNGRFKSVKHRVLA 263
D+ + G ++T G+ K+ +H V A
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247
>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
Length = 781
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 68 SISRLESEAIRFFSLPFSEKEKSGPPSPFGYGNKCIGR--NGDVGWVE----YLLLNTNQ 121
SI L ++++ F + P S G +CI + NG++ W+ L N N
Sbjct: 186 SILSLNDKSVKHFV-----HDPQNPNSLPGNDVRCIYKDTNGNI-WIGTSKGLALFNANT 239
Query: 122 DSNSSLGNNPDQFRFALSEYISAVKRM 148
++ ++ NNP ALS YI ++K++
Sbjct: 240 ETFTNFHNNPGNIHGALSSYIFSIKQL 266
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 63 GVPLESISRLESEAIRFFSLPFSEKEKSGPPSPFGYG 99
GVPL I RL S P + ++ P + FGYG
Sbjct: 280 GVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYG 316
>pdb|2VTF|A Chain A, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
pdb|2VTF|B Chain B, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
Length = 626
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 168 LSKLLMDEQSDSVFRLNHYPPRPDRISNLIGFGEHTDPQIISVLRSN-NTSGL 219
L++ D D+ F +H P P R+++ + TD ++S+ N +TSG+
Sbjct: 21 LAQWEPDSDPDAPFNRSHVPLEPGRVADRVNANADTDAHLVSLSALNRHTSGV 73
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 63 GVPLESISRLESEAIRFFSLPFSEKEKSGPPSPFGYG 99
GVPL I RL S P + ++ P + FGYG
Sbjct: 280 GVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYG 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,920,102
Number of Sequences: 62578
Number of extensions: 404858
Number of successful extensions: 939
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 31
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)