Query 020153
Match_columns 330
No_of_seqs 178 out of 1288
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00701 manganese transport p 100.0 3.7E-55 7.9E-60 433.7 29.8 274 3-283 160-437 (439)
2 KOG1291 Mn2+ and Fe2+ transpor 100.0 3.7E-57 8E-62 435.1 9.3 309 3-316 155-481 (503)
3 TIGR01197 nramp NRAMP (natural 100.0 4.2E-50 9.2E-55 391.5 26.3 243 3-250 130-390 (390)
4 COG1914 MntH Mn2+ and Fe2+ tra 100.0 3.3E-47 7.1E-52 371.6 29.8 269 6-284 144-414 (416)
5 PF01566 Nramp: Natural resist 100.0 8.8E-48 1.9E-52 372.7 23.6 247 5-257 110-358 (358)
6 PF03222 Trp_Tyr_perm: Tryptop 96.9 0.53 1.2E-05 46.6 24.7 33 6-38 137-169 (394)
7 COG0733 Na+-dependent transpor 96.7 0.64 1.4E-05 46.4 22.2 162 5-186 160-338 (439)
8 PRK15132 tyrosine transporter 96.6 0.7 1.5E-05 45.9 21.8 34 6-39 137-170 (403)
9 PRK10483 tryptophan permease; 95.9 2.2 4.7E-05 42.6 22.7 35 7-41 145-181 (414)
10 PRK09664 tryptophan permease T 95.4 3.3 7E-05 41.4 22.4 35 7-41 144-180 (415)
11 TIGR00837 araaP aromatic amino 95.1 3.6 7.7E-05 40.0 20.9 75 133-210 251-325 (381)
12 TIGR00796 livcs branched-chain 94.6 2.9 6.2E-05 41.2 17.4 96 133-242 253-348 (378)
13 PRK11375 allantoin permease; P 94.1 7.6 0.00016 39.5 24.3 92 151-248 308-402 (484)
14 TIGR00814 stp serine transport 93.6 2.8 6.1E-05 41.5 15.1 34 4-37 137-170 (397)
15 TIGR00835 agcS amino acid carr 93.3 8.8 0.00019 38.5 18.0 216 5-244 182-415 (425)
16 PRK10484 putative transporter; 92.3 15 0.00032 37.6 22.8 43 138-183 317-360 (523)
17 PF01235 Na_Ala_symp: Sodium:a 92.3 7.8 0.00017 38.7 16.0 217 5-244 155-389 (416)
18 PRK15433 branched-chain amino 91.4 17 0.00037 36.6 21.3 97 137-248 267-363 (439)
19 COG1114 BrnQ Branched-chain am 90.5 20 0.00044 35.8 16.8 90 137-240 265-354 (431)
20 TIGR00813 sss transporter, SSS 90.2 16 0.00034 36.0 16.0 42 139-183 285-327 (407)
21 TIGR02121 Na_Pro_sym sodium/pr 89.1 28 0.0006 35.3 26.0 41 140-183 310-351 (487)
22 PRK13629 threonine/serine tran 89.0 27 0.00059 35.2 20.8 35 5-39 154-188 (443)
23 PF02133 Transp_cyt_pur: Perme 88.1 2.6 5.6E-05 41.9 8.8 75 160-240 291-367 (440)
24 PF00209 SNF: Sodium:neurotran 87.8 35 0.00075 34.9 20.2 24 151-174 346-369 (523)
25 COG1457 CodB Purine-cytosine p 87.4 35 0.00075 34.4 23.3 64 6-71 147-212 (442)
26 PF00474 SSF: Sodium:solute sy 87.3 29 0.00063 33.9 15.7 44 138-184 282-326 (406)
27 TIGR00907 2A0304 amino acid pe 87.1 35 0.00077 34.2 21.1 37 136-174 290-326 (482)
28 PF05525 Branch_AA_trans: Bran 85.0 45 0.00098 33.5 24.9 134 94-242 221-354 (427)
29 PRK15419 proline:sodium sympor 84.9 48 0.001 33.7 18.6 41 140-183 317-358 (502)
30 PF13520 AA_permease_2: Amino 83.0 49 0.0011 32.3 21.5 36 138-176 261-296 (426)
31 PRK11387 S-methylmethionine tr 82.2 58 0.0013 32.7 20.6 38 135-175 275-312 (471)
32 PRK09509 fieF ferrous iron eff 76.9 16 0.00036 34.4 9.0 90 5-105 72-162 (299)
33 COG0814 SdaC Amino acid permea 74.7 95 0.002 30.9 21.5 58 7-65 146-203 (415)
34 TIGR01297 CDF cation diffusion 74.6 41 0.00089 30.8 10.9 91 5-106 51-142 (268)
35 PRK03557 zinc transporter ZitB 73.8 47 0.001 31.6 11.3 90 5-106 80-169 (312)
36 COG1115 AlsT Na+/alanine sympo 73.1 1.1E+02 0.0024 30.9 19.3 56 137-195 339-394 (452)
37 TIGR02358 thia_cytX probable h 72.3 1E+02 0.0022 30.2 22.2 82 158-249 251-334 (386)
38 COG3949 Uncharacterized membra 71.3 1E+02 0.0023 29.9 13.6 154 97-284 34-200 (349)
39 PRK10249 phenylalanine transpo 70.2 1.2E+02 0.0026 30.3 18.8 38 135-175 278-315 (458)
40 PF00324 AA_permease: Amino ac 69.4 33 0.00071 34.4 9.6 35 138-175 277-311 (478)
41 TIGR00911 2A0308 L-type amino 69.0 1.3E+02 0.0029 30.3 24.0 14 290-303 454-467 (501)
42 PF06570 DUF1129: Protein of u 61.6 94 0.002 27.7 10.1 73 230-305 120-194 (206)
43 KOG1289 Amino acid transporter 61.2 75 0.0016 32.9 10.2 70 100-171 288-362 (550)
44 COG0053 MMT1 Predicted Co/Zn/C 60.5 74 0.0016 30.3 9.7 92 5-107 74-166 (304)
45 TIGR00800 ncs1 NCS1 nucleoside 59.3 1.9E+02 0.0042 28.7 19.3 21 220-240 358-378 (442)
46 PRK11017 codB cytosine permeas 55.7 2.1E+02 0.0046 28.1 22.6 30 220-249 312-343 (404)
47 TIGR03813 put_Glu_GABA_T putat 53.3 2.5E+02 0.0053 28.1 27.1 18 151-168 279-296 (474)
48 PRK10692 hypothetical protein; 51.8 99 0.0021 24.0 7.1 61 252-314 3-63 (92)
49 TIGR03428 ureacarb_perm permea 50.6 2.7E+02 0.0059 27.8 26.1 25 249-273 412-436 (475)
50 PF10762 DUF2583: Protein of u 49.6 99 0.0021 23.9 6.7 60 253-314 4-63 (89)
51 PF10136 SpecificRecomb: Site- 48.4 1.1E+02 0.0024 32.4 9.3 25 46-70 362-389 (643)
52 TIGR00908 2A0305 ethanolamine 48.2 2.8E+02 0.0061 27.3 26.7 13 135-147 260-272 (442)
53 PRK09442 panF sodium/panthothe 46.6 3.2E+02 0.007 27.5 28.6 42 138-182 309-351 (483)
54 COG0591 PutP Na+/proline sympo 45.3 3.5E+02 0.0075 27.5 22.4 42 138-182 315-357 (493)
55 PRK12488 acetate permease; Pro 44.8 3.7E+02 0.008 27.7 17.8 9 60-68 271-279 (549)
56 TIGR03648 Na_symport_lg probab 44.1 3.8E+02 0.0082 27.6 15.9 32 151-182 366-398 (552)
57 PRK11357 frlA putative fructos 41.2 3.6E+02 0.0079 26.6 22.7 22 144-168 275-296 (445)
58 TIGR00905 2A0302 transporter, 41.0 3.8E+02 0.0083 26.8 27.5 36 137-175 270-305 (473)
59 TIGR03810 arg_ornith_anti argi 40.7 3.8E+02 0.0083 26.7 28.5 37 137-176 266-302 (468)
60 TIGR02711 symport_actP cation/ 40.1 4.4E+02 0.0095 27.2 17.3 30 137-168 342-371 (549)
61 PF06724 DUF1206: Domain of Un 37.9 1.5E+02 0.0034 21.5 6.3 36 130-168 29-65 (73)
62 PF09685 Tic20: Tic20-like pro 37.4 1.9E+02 0.0042 22.3 8.8 34 232-267 17-50 (109)
63 TIGR00906 2A0303 cationic amin 36.5 5E+02 0.011 26.8 27.4 36 137-175 301-336 (557)
64 COG1283 NptA Na+/phosphate sym 36.5 5.1E+02 0.011 26.9 14.6 48 136-185 162-209 (533)
65 TIGR00909 2A0306 amino acid tr 35.2 4.3E+02 0.0094 25.7 24.7 37 137-176 266-302 (429)
66 COG1230 CzcD Co/Zn/Cd efflux s 33.0 3.2E+02 0.0069 26.1 9.0 61 5-71 83-143 (296)
67 PF11139 DUF2910: Protein of u 31.9 3.6E+02 0.0079 23.8 10.2 72 253-324 27-101 (214)
68 COG1294 AppB Cytochrome bd-typ 27.2 6E+02 0.013 24.9 19.9 29 292-320 316-344 (346)
69 KOG1303 Amino acid transporter 25.7 7E+02 0.015 25.1 17.4 56 55-123 231-286 (437)
70 TIGR00912 2A0309 spore germina 25.2 5.9E+02 0.013 24.1 19.4 22 5-26 131-152 (359)
71 TIGR00366 conserved hypothetic 24.8 7.4E+02 0.016 25.1 17.4 28 8-35 242-271 (438)
72 TIGR00912 2A0309 spore germina 24.8 6E+02 0.013 24.0 19.4 54 99-161 34-87 (359)
73 TIGR01773 GABAperm gamma-amino 24.3 6.9E+02 0.015 24.6 20.8 35 137-174 273-307 (452)
74 PF13253 DUF4044: Protein of u 23.8 1.5E+02 0.0034 18.9 3.5 28 5-32 3-30 (35)
75 COG1953 FUI1 Cytosine/uracil/t 23.3 8.3E+02 0.018 25.2 20.6 25 7-31 192-216 (497)
76 PRK15049 L-asparagine permease 23.1 7.9E+02 0.017 24.8 28.2 37 136-175 290-326 (499)
77 PF04896 AmoC: Ammonia monooxy 22.8 4.5E+02 0.0097 24.4 7.7 51 237-287 77-127 (251)
78 PRK11021 putative transporter; 22.7 7.1E+02 0.015 24.1 26.8 37 135-174 246-282 (410)
79 PF01036 Bac_rhodopsin: Bacter 21.7 4.2E+02 0.0092 23.6 7.5 23 297-319 129-151 (222)
80 PRK13747 putative mercury resi 20.5 3.8E+02 0.0083 20.2 5.6 26 291-316 51-76 (78)
81 TIGR00930 2a30 K-Cl cotranspor 20.2 1.2E+03 0.027 26.0 26.0 25 152-176 386-410 (953)
82 PF14329 DUF4386: Domain of un 20.2 4.2E+02 0.009 23.3 7.1 56 255-313 159-214 (215)
No 1
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=3.7e-55 Score=433.66 Aligned_cols=274 Identities=34% Similarity=0.555 Sum_probs=250.3
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccC---CCh-hHHHHHHHhhhhhhhhhHHHHhhhhhh
Q 020153 3 FCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPK---LSS-KTIQQAVGVVGCIIMPHNVFLHSALVQ 78 (330)
Q Consensus 3 ~~~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~---~~~-~~l~~~vaiiGaTI~P~~lfl~S~lv~ 78 (330)
+++++||++||++..++++|.+||+.+++.++|||+|+++| ++|+ +|+ ++++.++|++|||+||||+|+||+++|
T Consensus 160 l~~~~y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~ 238 (439)
T PRK00701 160 LQRRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQ 238 (439)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999 8999 874 678999999999999999999999998
Q ss_pred hcccCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcCCChhHHHHHHHH
Q 020153 79 SRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGI 158 (330)
Q Consensus 79 ~r~~~~~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G~~~~~a~~lFai 158 (330)
||+++ ++++..++++|++|+|+.+|+.+++++|.++++++|+++|+++..+..+.+|++++|||.+|+ +++++|++
T Consensus 239 ~k~~~-~~~~~~~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p~~G~---~a~~lFai 314 (439)
T PRK00701 239 TRVVG-RTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGA---AAATLFGI 314 (439)
T ss_pred hcccc-CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHhH---HHHHHHHH
Confidence 88544 334556788999999999999999999999999999999988764578899999999999999 99999999
Q ss_pred HHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhHhHHHHH
Q 020153 159 GLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALI 238 (330)
Q Consensus 159 GL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~~l~LP~~li 238 (330)
|+++||++|++++++++++++|+++||+.+++.||..++.+.++|++++. +.+. +.++.++++++|++|+++||++++
T Consensus 315 GL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~-~~~~-~~~p~~lli~aqv~~~i~LP~~~~ 392 (439)
T PRK00701 315 ALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVI-LLGG-ELDPTRLLVLSQVVLSFGLPFALI 392 (439)
T ss_pred HHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987654 4451 123458899999999999999999
Q ss_pred HHHHHHcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020153 239 PLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFS 283 (330)
Q Consensus 239 ~Ll~l~n~r~iMG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~ 283 (330)
|+++++||||+||+|||++++|+++|+++++++.+|++++++.++
T Consensus 393 ~ll~l~~~~~imG~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 437 (439)
T PRK00701 393 PLLLFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTFT 437 (439)
T ss_pred HHHHHHCCHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998764
No 2
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-57 Score=435.13 Aligned_cols=309 Identities=54% Similarity=0.830 Sum_probs=288.2
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCC---hhHHHHHHHhhhhhhhhhHHHHhhhhhhh
Q 020153 3 FCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQS 79 (330)
Q Consensus 3 ~~~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~---~~~l~~~vaiiGaTI~P~~lfl~S~lv~~ 79 (330)
++|+|.|++|.+..+++..|.+||.+++..++|+.+|++.|.++|+++ ++.++.++|++|+||||||+|+||++||+
T Consensus 155 l~kyGiRklE~~~~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~s 234 (503)
T KOG1291|consen 155 LDKYGIRKLEAFFAFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQS 234 (503)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcc
Confidence 578999999999999999999999999999999999999999999987 78999999999999999999999999999
Q ss_pred cccCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCCCCcc-------------ccCchhHHHHHHHhc
Q 020153 80 RDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVF-AKGFYGTEQAN-------------NIGLVNAGQYLQEKY 145 (330)
Q Consensus 80 r~~~~~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~-A~~l~~~~~~~-------------~~~~~~aa~~L~p~~ 145 (330)
|+.|++.+...+|+.+|..+|..+++.+++.+|..++.+. |+.++++.+.+ +.|+.+++..|+..+
T Consensus 235 R~~d~~~~~~v~ea~~y~~ies~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~ 314 (503)
T KOG1291|consen 235 RLIDRDVKKGVYEANNYFPIESAIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYF 314 (503)
T ss_pred cccCHhhhhhhHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHh
Confidence 9999987777889999999999999999999999999888 88888765432 335778899999999
Q ss_pred CCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 020153 146 GGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWL 225 (330)
Q Consensus 146 G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~ 225 (330)
|+ ++.++|++|+++|||||++++|++||++||||+||++++|.||+.||+++++|++++++..|.+ ++.+++.++
T Consensus 315 g~---~a~~Ifai~lLasGQSstitgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~--~l~~l~~~~ 389 (503)
T KOG1291|consen 315 GP---AALYIFAIGLLASGQSSTITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGED--GLSGLNDFL 389 (503)
T ss_pred cc---HHHHHHHHHHHHCCCcccceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcc--cHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999999999999988777755 578999999
Q ss_pred HHHHHhHhHHHHHHHHHHHcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHH
Q 020153 226 NVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVN-GVLIATVIGVFTAGYVA 304 (330)
Q Consensus 226 qvi~~l~LP~~li~Ll~l~n~r~iMG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~y~~ 304 (330)
|++++++|||+++|++.++++|++||+|+|+...+...|.+..++...|.|++++++..+.+ ++.+...+....+.|++
T Consensus 390 nvl~S~~LPFa~iPLl~ftS~r~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~~~~~~~~~~~~~~~~~~~y~~ 469 (503)
T KOG1291|consen 390 NVLQSLQLPFAVIPLLTFTSSRKIMGVFKNGLVTEELTWTVAALVLGINGYFLVSFFWSLVGKHSKIVVTVNVWTLAYLA 469 (503)
T ss_pred HHHHHHhhhHHHhhHHhhhccHHHhhhhccCccceeeeehheeeeeeeeeEEeeeehhhhcCCceeeehhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888877 46788999999999999
Q ss_pred HHHHHHHhcccc
Q 020153 305 FIIYLVSRGITF 316 (330)
Q Consensus 305 ~~~~~~~~~~~~ 316 (330)
+.+|++.+++..
T Consensus 470 ~i~yL~~~~l~~ 481 (503)
T KOG1291|consen 470 FILYLAATCLNA 481 (503)
T ss_pred HHHHHHHHHHHH
Confidence 999999986443
No 3
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=4.2e-50 Score=391.48 Aligned_cols=243 Identities=37% Similarity=0.581 Sum_probs=217.6
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCC---hhHHHHHHHhhhhhhhhhHHHHhhhhhhh
Q 020153 3 FCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQS 79 (330)
Q Consensus 3 ~~~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~---~~~l~~~vaiiGaTI~P~~lfl~S~lv~~ 79 (330)
+++++||++||++..++++|.+||+++++.+||||+|+++|+++|+.| +++++.++|++||||||||+|+||+++||
T Consensus 130 ~~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~ 209 (390)
T TIGR01197 130 LDKPGLRILEAFVALLVTIVAICFAYELFYAKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQS 209 (390)
T ss_pred HHhCCceeHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhc
Confidence 468999999999999999999999999999999999999998899875 57889999999999999999999999999
Q ss_pred cccCCCchhhhH-------------HHHhHHHHHHHHHHHHHHH-HHHHHHHHhhhhccCCCC-ccccCchhHHHHHHHh
Q 020153 80 RDIDNNKKGRVQ-------------EALRYYSIESTLALVVSFM-INLFVTTVFAKGFYGTEQ-ANNIGLVNAGQYLQEK 144 (330)
Q Consensus 80 r~~~~~~~~~~~-------------~~l~~~r~D~~~g~~v~~i-i~~aili~~A~~l~~~~~-~~~~~~~~aa~~L~p~ 144 (330)
|+++++++++++ ...++.|.|+.+++....+ +|.++++++|+++|+++. .+..|++|++++|||.
T Consensus 210 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p~ 289 (390)
T TIGR01197 210 RLVDRDVKEGVSEANMYRPIEAAIALSVSFSINEFVIALFTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCL 289 (390)
T ss_pred cccCcccchhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHHH
Confidence 998876643322 3457889999999988665 799999999999987533 4678899999999999
Q ss_pred cCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 020153 145 YGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEW 224 (330)
Q Consensus 145 ~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~ 224 (330)
+|+ +++++|++||++||+||++++++++|++++||+||+.++|+|+..+|.+.++|++++..+.|.. ++.+++++
T Consensus 290 ~G~---~a~~lF~igLlaAG~sS~it~~~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~--~p~~liv~ 364 (390)
T TIGR01197 290 FSP---AAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGRE--GLTGALNA 364 (390)
T ss_pred hhH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999998889988765544322 35689999
Q ss_pred HHHHHHhHhHHHHHHHHHHHcCCccc
Q 020153 225 LNVLQSVQIPFALIPLLYLVSQEHIM 250 (330)
Q Consensus 225 ~qvi~~l~LP~~li~Ll~l~n~r~iM 250 (330)
+|++|+++||++++|+++++||||+|
T Consensus 365 aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 365 SQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 99999999999999999999999998
No 4
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-47 Score=371.59 Aligned_cols=269 Identities=34% Similarity=0.573 Sum_probs=248.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCCh-hHHHHHHHhhhhhhhhhHHHHhhhhhhhcccCC
Q 020153 6 FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSS-KTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDN 84 (330)
Q Consensus 6 ~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~~-~~l~~~vaiiGaTI~P~~lfl~S~lv~~r~~~~ 84 (330)
++||++||+...++..+.+||.++++.++|+|+++.++.++|+.|. +.++.++|++|+|||||++|+||+.+|++..
T Consensus 144 ~~~r~~E~~v~~l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~-- 221 (416)
T COG1914 144 KGYRLLERVVLILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI-- 221 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc--
Confidence 3899999999999999999999999999999999999999999876 8999999999999999999999999998332
Q ss_pred CchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC-ccccCchhHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 020153 85 NKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQ-ANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAA 163 (330)
Q Consensus 85 ~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~-~~~~~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aA 163 (330)
+++..++++|++++|+.+++..+.++|.++++++|..+|.++. .+..+++++++.++|.+|+ .+..+|+++++++
T Consensus 222 -~~~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~---~~~~lF~v~llas 297 (416)
T COG1914 222 -KGEENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGS---AAFVLFGVALLAA 297 (416)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhh---HHHHHHHHHHHHh
Confidence 2334578899999999999999999999999999999998775 4577899999999999998 8999999999999
Q ss_pred hhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhHhHHHHHHHHHH
Q 020153 164 GQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYL 243 (330)
Q Consensus 164 g~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~~l~LP~~li~Ll~l 243 (330)
|++|+++++++++++++|+++|+.++|.||..+|.+.++|+.++....| +| .++++++|+++++++|++++|++++
T Consensus 298 g~~s~~~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g-~~---~~lL~~sqvl~~~~lP~~~~~ll~~ 373 (416)
T COG1914 298 GLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFG-DP---ARLLVFSQVLLSVILPFALIPLLLL 373 (416)
T ss_pred HHHHHHHHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHc-cH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999776666676 44 4899999999999999999999999
Q ss_pred HcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020153 244 VSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSS 284 (330)
Q Consensus 244 ~n~r~iMG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~ 284 (330)
++|||+||+|+|++|.++++|.+++.+..+|++++.+++.+
T Consensus 374 ~~~k~~mg~~~~~~~~~~~~~~v~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 374 TSDKKLMGDYKNPRWLTVLGWIVVILIVALNIILLVGTLGG 414 (416)
T ss_pred HcChhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988754
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=8.8e-48 Score=372.73 Aligned_cols=247 Identities=34% Similarity=0.518 Sum_probs=223.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCCh-hHHHHHHHhhhhhhhhhHHHHhhhhhhhcccC
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSS-KTIQQAVGVVGCIIMPHNVFLHSALVQSRDID 83 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~~-~~l~~~vaiiGaTI~P~~lfl~S~lv~~r~~~ 83 (330)
+++||++||+++.++.+|.+||+++++.++|||+++.+|++.|++|+ +++..++|++|||++|||+|+||+.++||+++
T Consensus 110 ~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~ 189 (358)
T PF01566_consen 110 SGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWT 189 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccC
Confidence 89999999999999999999999999999999999999976699998 99999999999999999999999999999988
Q ss_pred CCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcC-CChhHHHHHHHHHHHH
Q 020153 84 NNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYG-GGLFPILYIWGIGLLA 162 (330)
Q Consensus 84 ~~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G-~~~~~a~~lFaiGL~a 162 (330)
++++++ ++++|++|+|+.+|+++++++|.++++++|+++|+.+. +.++.+|++++|+|.+| + +++++|++|+++
T Consensus 190 ~~~~~~-~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~-~~~~~~~~~~~L~~~~G~~---~a~~lF~igl~~ 264 (358)
T PF01566_consen 190 GNRSRP-DEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGS-EVETAAQAAQALEPLLGSP---WARYLFAIGLFA 264 (358)
T ss_pred CCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chhhHHHHHHHHHHhcCch---HHHHhHHHHHHH
Confidence 644211 26799999999999999999999999999999994433 57899999999999999 8 999999999999
Q ss_pred hhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhHhHHHHHHHHH
Q 020153 163 AGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLY 242 (330)
Q Consensus 163 Ag~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~~l~LP~~li~Ll~ 242 (330)
|+++|+++.++++++.++|++||+.++++|+..++.....|++++....+.+ ..+.++++++|++|++.+|++++++++
T Consensus 265 a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~v~~~~~lP~~~~~l~~ 343 (358)
T PF01566_consen 265 AGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLIGAP-GAPVQLLIFAQVLNSLLLPFVAIPLLL 343 (358)
T ss_pred HHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888777777778877665555443 335789999999999999999999999
Q ss_pred HHcCCcccCCCCchH
Q 020153 243 LVSQEHIMGTFKIGP 257 (330)
Q Consensus 243 l~n~r~iMG~~~n~~ 257 (330)
++|||++||||||+|
T Consensus 344 l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 344 LANDKKLMGEYRNSW 358 (358)
T ss_pred HHcChhhhhCcccCC
Confidence 999999999999986
No 6
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=96.89 E-value=0.53 Score=46.55 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=27.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH
Q 020153 6 FGLVLLLLLSIVLIATMALSFAWMFGETKPSGS 38 (330)
Q Consensus 6 ~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~ 38 (330)
.|.|.++|+...++..|.++|.......-|+|.
T Consensus 137 ~g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~ 169 (394)
T PF03222_consen 137 FGTKAVDRINRVLVFGMIISFIILVVYLIPHWN 169 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 466789999999999999999888877767663
No 7
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.69 E-value=0.64 Score=46.44 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=85.5
Q ss_pred CcchHH-HHHHHHHHHHHHHHHHHHHHhhc--CCCHHhhhccccccCCCh----hHHHHH-------HHhhhhhhhhhHH
Q 020153 5 PFGLVL-LLLLSIVLIATMALSFAWMFGET--KPSGSELLIGILVPKLSS----KTIQQA-------VGVVGCIIMPHNV 70 (330)
Q Consensus 5 ~~~yr~-~E~~~~~lv~~m~l~fi~~~~~~--~P~~~~v~~g~~~P~~~~----~~l~~~-------vaiiGaTI~P~~l 70 (330)
++|-++ +||..++++=++.++|++.++.+ .|.-.|=.+-.+.|+.++ +.+..+ +++=.++..-|.
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYs- 238 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYS- 238 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345555 99999988888888888877654 666555555556676421 222222 222222222333
Q ss_pred HHhhhhhhhcccCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHH--HhcCCC
Q 020153 71 FLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQ--EKYGGG 148 (330)
Q Consensus 71 fl~S~lv~~r~~~~~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~--p~~G~~ 148 (330)
|++ +|+.| ..+......-.|+.++.+.+..|--++-..+.. .+.| ...-.....+.+. | +|+
T Consensus 239 ---SYL--~k~~~-----l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~--~~~G--pgL~Fi~LP~if~~mp-~G~- 302 (439)
T COG0733 239 ---SYL--SKKSD-----LVSSALSIVLLNTLISLLAGLVIFPALFSFGAD--ASQG--PGLVFIVLPAVFNQMP-LGT- 302 (439)
T ss_pred ---hhc--Ccccc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCC--CeeehhHHHHHHHhCc-hhH-
Confidence 333 22222 335566667777777776664433332222221 1111 1111222233332 2 777
Q ss_pred hhHHHHHHHHHHHHhhhhhHhhhhhH-HHHHHhhhcCcc
Q 020153 149 LFPILYIWGIGLLAAGQSSTITGTYA-GQFIMGGFLNLR 186 (330)
Q Consensus 149 ~~~a~~lFaiGL~aAg~sS~i~~~~a-~~~v~~g~l~~~ 186 (330)
.-..+|-+.++.|+++|++..--. .++..+++ +++
T Consensus 303 --~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~-~~~ 338 (439)
T COG0733 303 --LFGILFFLLLLFAALTSAISMLEVLVAALIDKF-GIS 338 (439)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Ccc
Confidence 667889999999999998754222 23344553 543
No 8
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=96.57 E-value=0.7 Score=45.91 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHh
Q 020153 6 FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSE 39 (330)
Q Consensus 6 ~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~ 39 (330)
.|-|.++|+..+++..|.++|+......-|+|..
T Consensus 137 ~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~ 170 (403)
T PRK15132 137 VGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHK 170 (403)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3668999999999999999998887777787753
No 9
>PRK10483 tryptophan permease; Provisional
Probab=95.89 E-value=2.2 Score=42.64 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHhhh
Q 020153 7 GLVLLLLLSIVLIATMALSFAWMFGET--KPSGSELL 41 (330)
Q Consensus 7 ~yr~~E~~~~~lv~~m~l~fi~~~~~~--~P~~~~v~ 41 (330)
|-|.+||+..+++..|.+.|+...... |-|...+.
T Consensus 145 gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~ 181 (414)
T PRK10483 145 STKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLF 181 (414)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHh
Confidence 568899999999999998888775553 44544443
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=95.41 E-value=3.3 Score=41.40 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHhhh
Q 020153 7 GLVLLLLLSIVLIATMALSFAWMFGET--KPSGSELL 41 (330)
Q Consensus 7 ~yr~~E~~~~~lv~~m~l~fi~~~~~~--~P~~~~v~ 41 (330)
|-|.+||+...+...|.++|+...... |-|+..+.
T Consensus 144 gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~ 180 (415)
T PRK09664 144 SSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILR 180 (415)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHh
Confidence 458888888888899999888765554 45555543
No 11
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=95.08 E-value=3.6 Score=39.96 Aligned_cols=75 Identities=17% Similarity=0.005 Sum_probs=40.0
Q ss_pred CchhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHh
Q 020153 133 GLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALV 210 (330)
Q Consensus 133 ~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~ 210 (330)
+.++..++++...|+. +...+..++-..|-.+|.....++..-...+.++++.+++. |.....+..+|.++++.+
T Consensus 251 ~~~~l~~~~~~~~~~~--~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~ 325 (381)
T TIGR00837 251 NLDGLVNALQGVLKSS--AIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKG-RFKTGLLTFLPPLVFALF 325 (381)
T ss_pred ChHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CchhhhhhHHhHHHHHHH
Confidence 3345566777777763 45566666666666666665555543335555555332222 333334444555555544
No 12
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.61 E-value=2.9 Score=41.25 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=61.1
Q ss_pred CchhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcC
Q 020153 133 GLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFD 212 (330)
Q Consensus 133 ~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g 212 (330)
..+-+++.-+..+|+ ++..+.++...-|.+++++....+.+-..++... +..|+.......+... ++. ..|
T Consensus 253 ~~~~l~~~a~~~~G~---~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~----k~~y~~~v~~~~l~s~-~ia-~~G 323 (378)
T TIGR00796 253 GAQILSAYSQHLFGS---LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP----KLSYKTWVIVFTLFSF-IVA-NLG 323 (378)
T ss_pred cHHHHHHHHHHHcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHH-HHH-HhC
Confidence 344556777899999 8999999999999999988766664333333222 2334443333333332 222 223
Q ss_pred CCcchhHHHHHHHHHHHHhHhHHHHHHHHH
Q 020153 213 TSEDMLDVLNEWLNVLQSVQIPFALIPLLY 242 (330)
Q Consensus 213 ~~p~~l~~l~~~~qvi~~l~LP~~li~Ll~ 242 (330)
+.+++.++-=+..+.-|.+.+-.+.
T Consensus 324 -----l~~Ii~~~~PvL~~~YP~~i~lill 348 (378)
T TIGR00796 324 -----LTQIISISIPVLMIIYPLAIVLILL 348 (378)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777777778888888876665
No 13
>PRK11375 allantoin permease; Provisional
Probab=94.12 E-value=7.6 Score=39.51 Aligned_cols=92 Identities=10% Similarity=0.168 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhhhhHh-hhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Q 020153 151 PILYIWGIGLLAAGQSSTI-TGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQ 229 (330)
Q Consensus 151 ~a~~lFaiGL~aAg~sS~i-~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~ 229 (330)
.+..+..+.++.+..+.-. .+.++++.-+...+.++.+++ |..+ ...++..++..... .+ .......+...+.
T Consensus 308 ~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~~~-~~~~--i~~iig~~~~pw~~-~~--~~~~f~~FL~~lg 381 (484)
T PRK11375 308 FASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKLTYK-NGVL--IASIISLLICPWKL-ME--NQDSIYLFLDIIG 381 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCccchh-hHHH--HHHHHHHHhccHHH-hc--cHHHHHHHHHHHH
Confidence 3444455666666666634 577777777777765443322 2222 12222222111100 01 0113455666677
Q ss_pred HhHhHHHHHHHH--HHHcCCc
Q 020153 230 SVQIPFALIPLL--YLVSQEH 248 (330)
Q Consensus 230 ~l~LP~~li~Ll--~l~n~r~ 248 (330)
.++-|...+.+. ++.+|++
T Consensus 382 ~~l~Pi~gImi~DY~i~rr~~ 402 (484)
T PRK11375 382 GMLGPVIGVMMAHYFVVMRGQ 402 (484)
T ss_pred HHHHHHHHHHHhhheeEeccE
Confidence 777777766662 3335543
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=93.57 E-value=2.8 Score=41.54 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=26.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 020153 4 CPFGLVLLLLLSIVLIATMALSFAWMFGETKPSG 37 (330)
Q Consensus 4 ~~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~ 37 (330)
...|-|.+.|+...++..+.+.++...+..-|+|
T Consensus 137 v~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 137 MSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999999888888887777777666665
No 15
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=93.26 E-value=8.8 Score=38.49 Aligned_cols=216 Identities=16% Similarity=0.072 Sum_probs=106.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCHHhhhccccccCCChhHHHHHHHhhhhhhhhhHHHHh-hh
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGET--------KPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLH-SA 75 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~--------~P~~~~v~~g~~~P~~~~~~l~~~vaiiGaTI~P~~lfl~-S~ 75 (330)
.+|.|++-|+...++-+|.+.|+...+.. .|-+.+++++-|-|+- ..=|.+|++++--..+-- .+
T Consensus 182 ~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a------~~GG~~G~~v~~ai~~Gv~Rg 255 (425)
T TIGR00835 182 FGGLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDA------AAGGFAGSTVAQAIMIGVKRG 255 (425)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchh------hHhHHHHHHHHHHHHHhhHHH
Confidence 47899999999999999999885443322 2334444555444331 223456655532211110 00
Q ss_pred h-hhhcccCCC--------chhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcC
Q 020153 76 L-VQSRDIDNN--------KKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYG 146 (330)
Q Consensus 76 l-v~~r~~~~~--------~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G 146 (330)
+ ..|.+.+.. .++..||.+ .+-++..+-.++-..++..+++++. ..++.+ +.+..+=..++++..+|
T Consensus 256 ~fSNEAG~Gsa~~a~a~a~~~hP~~QGl-~~~~~vfiDTivvCt~Talvil~tg-~~~~~~--~~~g~~lt~~af~~~~g 331 (425)
T TIGR00835 256 LFSNEAGMGSAPIAAAAAQVSHPVRQGL-VQMLGVFIDTMIVCTATALVILLSG-VWNNGE--GLSGAQLTQQALSYGLG 331 (425)
T ss_pred HhccccccCcHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC-ccCCCC--CCcHHHHHHHHHHHHhh
Confidence 0 011111100 001112211 2233333322222223333333332 222010 11122223467888888
Q ss_pred CChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 020153 147 GGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLN 226 (330)
Q Consensus 147 ~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~q 226 (330)
+ +..++.++.++.-++++.+...+-++...+-.++.|. .+.+|.....+..+. .+. ++..+-.++-
T Consensus 332 ~---~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~~-~~~~r~~~~~~~~~g-----~~~-----~~~~vw~~~D 397 (425)
T TIGR00835 332 S---FGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNKK-VKLYRLVFLAAVFVG-----AFL-----SLDLVWNLAD 397 (425)
T ss_pred h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cceeeehhhHHHHHH-----HHh-----hHHHHHHHHH
Confidence 8 7889999999999999999888877665554445432 334444332222222 111 1223444566
Q ss_pred HHHHhHhHHHHHHHHHHH
Q 020153 227 VLQSVQIPFALIPLLYLV 244 (330)
Q Consensus 227 vi~~l~LP~~li~Ll~l~ 244 (330)
..+++..=+=++.++.+.
T Consensus 398 ~~~~lm~i~Nlial~~L~ 415 (425)
T TIGR00835 398 LSMGLMAIPNLIAILLLR 415 (425)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666766666666666664
No 16
>PRK10484 putative transporter; Provisional
Probab=92.29 E-value=15 Score=37.64 Aligned_cols=43 Identities=9% Similarity=-0.039 Sum_probs=28.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhhc
Q 020153 138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGFL 183 (330)
Q Consensus 138 a~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~l 183 (330)
....++.+.+ +..-++..|+++|.+|+.-..-.+.+. ..++..
T Consensus 317 p~~~~~~lp~---~l~Gl~~a~ilAA~mST~~s~l~s~st~~t~Diy 360 (523)
T PRK10484 317 PTLVNDVLPV---PLVGFFAAVLFGAILSTFNGFLNSASTLFSLDIY 360 (523)
T ss_pred HHHHHHHcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777 666789999999999885544443333 345554
No 17
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=92.25 E-value=7.8 Score=38.74 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=109.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhc---C-CCHH----hhhccccccCCChhHHHHHHHhhhhhhhhhHHHHhh-h
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGET---K-PSGS----ELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHS-A 75 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~---~-P~~~----~v~~g~~~P~~~~~~l~~~vaiiGaTI~P~~lfl~S-~ 75 (330)
-+|-|++-|+...++=+|.+.|+...+.. | ++.+ ++.++-|-|+- ..-|.+|++++--+.+--+ +
T Consensus 155 ~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~a------a~GG~~G~~i~~ai~~Gv~Rg 228 (416)
T PF01235_consen 155 FGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKA------AFGGFAGSTIMMAIRQGVARG 228 (416)
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCcc------chhhHHHHHHHHHHHHhhhhh
Confidence 46889999999999999999988775443 3 2233 34444444432 2235677776422211100 0
Q ss_pred h-hhhcccCCC--------chhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcC
Q 020153 76 L-VQSRDIDNN--------KKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYG 146 (330)
Q Consensus 76 l-v~~r~~~~~--------~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G 146 (330)
+ ..|.+.+.. .+...+|.+ ..-++..+--++-..++..+++++.. .+..+ +.+..+-..++++..+|
T Consensus 229 ~fSNEAG~Gsa~~a~a~a~~~hP~~QGl-~~~~~vFiDTiiVCt~TalvIl~tG~-~~~~~--~~~g~~l~~~Af~~~~g 304 (416)
T PF01235_consen 229 LFSNEAGLGSAPIAHAAAETDHPVRQGL-VQMFEVFIDTIIVCTITALVILVTGV-WSWGS--GLEGAALTQAAFSTVLG 304 (416)
T ss_pred hccCCCCCChhHHHHHHhcCCCcHHHee-eeeehHhHHHHHHHHHHHHHhhccCC-CCCCC--cchHHHHHHHHHHHhhh
Confidence 0 011111110 000111111 11223333222222223333333322 11111 22333445778999999
Q ss_pred CChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 020153 147 GGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLN 226 (330)
Q Consensus 147 ~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~q 226 (330)
+ +..++..+.++.-+++|.+...+-++...+-.++.+...+.+|.+...... +..+.. +..+-.++-
T Consensus 305 ~---~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~~~~~~~~ri~~i~~~~-----~G~~~~-----~~~vW~~~D 371 (416)
T PF01235_consen 305 S---WGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGGKKAIWIYRILFIAMVF-----IGAVID-----LDLVWDLAD 371 (416)
T ss_pred h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEeeeehhhhhhh-----hhhccc-----chhHHHHHH
Confidence 8 889999999999999999988888766655555333233345544322111 112221 123344556
Q ss_pred HHHHhHhHHHHHHHHHHH
Q 020153 227 VLQSVQIPFALIPLLYLV 244 (330)
Q Consensus 227 vi~~l~LP~~li~Ll~l~ 244 (330)
..+++..=+=++.++++.
T Consensus 372 i~~~lmai~Nlial~lL~ 389 (416)
T PF01235_consen 372 IANGLMAIPNLIALLLLS 389 (416)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 666666666666666664
No 18
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=91.40 E-value=17 Score=36.56 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 020153 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSED 216 (330)
Q Consensus 137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~ 216 (330)
.....+..+|+ +...++++.++.|.+++++....+.+--.++..+ ..||.....+.++.. .++. .|
T Consensus 267 l~~~~~~~~G~---~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-----isY~~~v~i~~l~S~-~lSn-~G---- 332 (439)
T PRK15433 267 LHAYVQHTFGG---GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-----LSYRTLVFILGGFSM-VVSN-LG---- 332 (439)
T ss_pred HHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHH-HHHH-hH----
Confidence 35567889999 8999999999999999999887775444444332 334443333333332 2222 23
Q ss_pred hhHHHHHHHHHHHHhHhHHHHHHHHHHHcCCc
Q 020153 217 MLDVLNEWLNVLQSVQIPFALIPLLYLVSQEH 248 (330)
Q Consensus 217 ~l~~l~~~~qvi~~l~LP~~li~Ll~l~n~r~ 248 (330)
+.+++.++-=+..++=|.+.+-.+.-.-||.
T Consensus 333 -~~~II~~s~PiL~~iYP~~IvLill~l~~~~ 363 (439)
T PRK15433 333 -LSQLIQISVPVLTAIYPPCIALVVLSFTRSW 363 (439)
T ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3366677777777888887755443323443
No 19
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=90.48 E-value=20 Score=35.75 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 020153 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSED 216 (330)
Q Consensus 137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~ 216 (330)
.++.=+..+|+ +...++++-..-|++++++...-+ +.||++...++..|+....+..+... .++- .|
T Consensus 265 L~~~s~~~fG~---~G~~lL~~iv~lACLTTaiGLi~a----~aefF~~~~p~~SY~~~v~if~i~sf-lvan-~G---- 331 (431)
T COG1114 265 LSAYSQHLFGS---YGSILLGLIVFLACLTTAVGLIVA----CAEFFSKLVPKLSYKTWVIIFTLISF-LVAN-LG---- 331 (431)
T ss_pred HHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcccccHHHHHHHHHHHHH-HHHH-hh----
Confidence 35555788999 888999999999998887755444 35666655555666665555444332 2322 23
Q ss_pred hhHHHHHHHHHHHHhHhHHHHHHH
Q 020153 217 MLDVLNEWLNVLQSVQIPFALIPL 240 (330)
Q Consensus 217 ~l~~l~~~~qvi~~l~LP~~li~L 240 (330)
+.+++.++-=+..+.=|....-.
T Consensus 332 -L~~Ii~isvPvL~~iYPiaI~Lv 354 (431)
T COG1114 332 -LEQIIKISVPVLTAIYPIAIALV 354 (431)
T ss_pred -HHHHHHHHHHHHHHHhHHHHHHH
Confidence 44666666666677778776443
No 20
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=90.20 E-value=16 Score=35.98 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=28.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhhc
Q 020153 139 QYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGFL 183 (330)
Q Consensus 139 ~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~l 183 (330)
...+..+++ +..-++..|+++|..|+.-..-.+.+. +.++..
T Consensus 285 ~~~~~~lp~---~l~gl~~agilaA~mST~~s~l~a~ss~~~~Di~ 327 (407)
T TIGR00813 285 LLVQELMPP---GLAGLFLAAILAAVMSTLSSQLNSASTVFTMDLY 327 (407)
T ss_pred HHHHHHcCc---chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344567777 677899999999999996655444433 345553
No 21
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=89.09 E-value=28 Score=35.30 Aligned_cols=41 Identities=20% Similarity=0.033 Sum_probs=27.2
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHH-HHHhhhc
Q 020153 140 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ-FIMGGFL 183 (330)
Q Consensus 140 ~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~-~v~~g~l 183 (330)
..+..+.+ +..-++..|+++|.+|+.-+.-.+.+ .+.++..
T Consensus 310 ~~~~~~p~---~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy 351 (487)
T TIGR02121 310 LSQILFHP---WIAGILLAAILAAIMSTISSQLLVSSSALTEDFY 351 (487)
T ss_pred HHHHhccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666 66678999999999998665544433 3455553
No 22
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=89.02 E-value=27 Score=35.19 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHh
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSE 39 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~ 39 (330)
..|-|.++|+...++..+.++|+...+..-|+|..
T Consensus 154 ~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~ 188 (443)
T PRK13629 154 WFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNS 188 (443)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 34679999999999999999999999999898863
No 23
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=88.09 E-value=2.6 Score=41.91 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=33.3
Q ss_pred HHHhhhhhH-hhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHH-hcCCCcchhHHHHHHHHHHHHhHhHHHH
Q 020153 160 LLAAGQSST-ITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVAL-VFDTSEDMLDVLNEWLNVLQSVQIPFAL 237 (330)
Q Consensus 160 L~aAg~sS~-i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~-~~g~~p~~l~~l~~~~qvi~~l~LP~~l 237 (330)
+..++..+. ..+.+++....+..++++.+.++.......+ ..+.... +.+.... .+..+.+.+..+.-|...
T Consensus 291 i~~~~~~~~~~~n~ys~~~~l~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~---~f~~fL~~lg~~~~P~~g 364 (440)
T PF02133_consen 291 ILFASIWTNNAANLYSAGLALQNIFPKRISRRRGVIIVGVI---GIAIAPWGLLGNFSF---LFTNFLSLLGYFLGPWAG 364 (440)
T ss_dssp HHHHHHTTHHHHHTHHHHHHHHCCSTTT--HHHHHHHHHHH---HHCT-GGGTCCCCHC-------HCCCCCHTTHHHHH
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHccceeecchHHHHHHHHH---HHHHHHHHHHhchhh---hHHHHHHHHHHhchhHHH
Confidence 333344333 3456666666677666444444333333222 2111111 2332211 144556666677778877
Q ss_pred HHH
Q 020153 238 IPL 240 (330)
Q Consensus 238 i~L 240 (330)
+.+
T Consensus 365 I~i 367 (440)
T PF02133_consen 365 IMI 367 (440)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 24
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=87.83 E-value=35 Score=34.94 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhH
Q 020153 151 PILYIWGIGLLAAGQSSTITGTYA 174 (330)
Q Consensus 151 ~a~~lFaiGL~aAg~sS~i~~~~a 174 (330)
.-..+|-+.++-+|++|.+...-.
T Consensus 346 ~~~~lFFl~l~~agl~S~i~~~E~ 369 (523)
T PF00209_consen 346 FWAILFFLMLFLAGLTSQISMLEV 369 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhhcCCceec
Confidence 344678888888888887755433
No 25
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=87.37 E-value=35 Score=34.45 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc-C-CCHHhhhccccccCCChhHHHHHHHhhhhhhhhhHHH
Q 020153 6 FGLVLLLLLSIVLIATMALSFAWMFGET-K-PSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVF 71 (330)
Q Consensus 6 ~~yr~~E~~~~~lv~~m~l~fi~~~~~~-~-P~~~~v~~g~~~P~~~~~~l~~~vaiiGaTI~P~~lf 71 (330)
.|||.+|++-+..+-.+.+.|.+..... + -++.+.... -.|+-+. .+..++++.=+-.+.|.-|
T Consensus 147 fG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~-~~~~~~~-~fl~a~slv~g~~~sw~~~ 212 (442)
T COG1457 147 FGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWV-KGPTSPL-SFLSALSLVIGSFASWGPY 212 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeec-cCCCcch-hHHHHHHHHHHHHHhhhhh
Confidence 5788888877777777777777665443 3 333333333 1344333 3444444433334444433
No 26
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=87.31 E-value=29 Score=33.94 Aligned_cols=44 Identities=14% Similarity=-0.045 Sum_probs=29.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhhcC
Q 020153 138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGFLN 184 (330)
Q Consensus 138 a~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~l~ 184 (330)
...++..+++ +..-++..++++|.+|+.-+...+.+. +.++..+
T Consensus 282 ~~~~~~~~p~---~~~gl~~~~~~aA~~ST~~s~l~a~ss~~~~Di~~ 326 (406)
T PF00474_consen 282 PYLAAQYLPP---GLAGLFLAGILAAIMSTADSLLLAISSIFSRDIYK 326 (406)
T ss_dssp HHHHT-TS-T---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhhhccc---hhHHHHHHHHHHhhhHHHHHHHhhhhhhhhHHhhh
Confidence 4445667777 677788899999999887666555443 4677643
No 27
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=87.06 E-value=35 Score=34.21 Aligned_cols=37 Identities=16% Similarity=-0.003 Sum_probs=20.2
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhH
Q 020153 136 NAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYA 174 (330)
Q Consensus 136 ~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a 174 (330)
..++.++..+|.. +...++.+....+.+++.....++
T Consensus 290 p~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~ 326 (482)
T TIGR00907 290 PIAQIFYNALGNK--AGAIFLLCLILVTSFFCAITCMTA 326 (482)
T ss_pred hHHHHHHHHhCCc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777773 333455555555555655544333
No 28
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=84.96 E-value=45 Score=33.49 Aligned_cols=134 Identities=16% Similarity=0.060 Sum_probs=75.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhh
Q 020153 94 LRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTY 173 (330)
Q Consensus 94 l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~ 173 (330)
.|....-..++...-.++-....-++|..-..-++ +.+..+-..+.-+..+|+ .+..++++...-|.+++++..+-
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~-~~~g~~lL~~i~~~~~G~---~G~~ll~iiv~lACLTTaIGL~~ 296 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPD-DINGAELLSQIANHLFGS---AGQILLGIIVFLACLTTAIGLIS 296 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccC-CCCHHHHHHHHHHHHcCh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444445443211011 122233335566788999 88899999999999999998777
Q ss_pred HHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhHhHHHHHHHHH
Q 020153 174 AGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLY 242 (330)
Q Consensus 174 a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~~l~LP~~li~Ll~ 242 (330)
+.+-..++..+ |..||.......++..+ ++. .| +.+++.++.=+..++=|.+.+-.+.
T Consensus 297 a~a~yf~~~~~----kisY~~~v~i~~i~S~~-ian-~G-----l~~Ii~~s~PiL~~iYP~~IvLIll 354 (427)
T PF05525_consen 297 ACAEYFSELFP----KISYKVWVIIFTIFSFI-IAN-LG-----LDQIIKISVPILMFIYPVAIVLILL 354 (427)
T ss_pred HHHHHHHHHhc----ccChHHHHHHHHHHHHH-HHH-hC-----HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 65544444444 33344444444444432 322 23 4477778877778888888765443
No 29
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=84.89 E-value=48 Score=33.72 Aligned_cols=41 Identities=20% Similarity=-0.015 Sum_probs=25.8
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHH-HHHhhhc
Q 020153 140 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ-FIMGGFL 183 (330)
Q Consensus 140 ~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~-~v~~g~l 183 (330)
..+..+.+ +..-++..|+++|.+|+.-..-.+.+ .+.+++.
T Consensus 317 l~~~~lp~---~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~Diy 358 (502)
T PRK15419 317 LAQILFNP---WIAGILLSAILAAVMSTLSCQLLVCSSAITEDLY 358 (502)
T ss_pred HHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566 66678999999999988654433333 2345553
No 30
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=82.96 E-value=49 Score=32.31 Aligned_cols=36 Identities=11% Similarity=-0.032 Sum_probs=24.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHH
Q 020153 138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ 176 (330)
Q Consensus 138 a~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~ 176 (330)
....+...|+ +...++.++...+.+.+..+...++.
T Consensus 261 ~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~s 296 (426)
T PF13520_consen 261 AVLASAVGGS---WLAIIVSIAAILSLFGSINAFIFGAS 296 (426)
T ss_dssp HHHHHHHHCC---THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccccc---ccccccccccccccccccchhhcchh
Confidence 3444555567 77788888888888887776655543
No 31
>PRK11387 S-methylmethionine transporter; Provisional
Probab=82.23 E-value=58 Score=32.65 Aligned_cols=38 Identities=18% Similarity=0.028 Sum_probs=25.2
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153 135 VNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG 175 (330)
Q Consensus 135 ~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~ 175 (330)
++..++++...|+ ++..+..++.+.+.+++.....+++
T Consensus 275 ~p~~~~~~~~g~~---~~~~ii~~~~~~s~~~~~~~~~~~~ 312 (471)
T PRK11387 275 SPFVLVFEKVGIP---YAADIFNFVILTAILSAANSGLYAS 312 (471)
T ss_pred ChHHHHHHHcCCc---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667776666 6777777777777777766555543
No 32
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=76.87 E-value=16 Score=34.45 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=45.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCC-ChhHHHHHHHhhhhhhhhhHHHHhhhhhhhcccC
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKL-SSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDID 83 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~-~~~~l~~~vaiiGaTI~P~~lfl~S~lv~~r~~~ 83 (330)
.+||.++|.+...+.+++.+...+..+.. .+..+ +-|.- +...+.+.++.++..+.....+++....+ +
T Consensus 72 pyG~~r~E~l~~l~~~~~l~~~~~~~~~e--si~~l----~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~--~-- 141 (299)
T PRK09509 72 TFGHGKAESLAALAQSMFISGSALFLFLT--GIQHL----ISPTPMNDPGVGIIVTLVALICTLILVTFQRWVVR--K-- 141 (299)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH----cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--H--
Confidence 57999999999876665554322222211 22222 23332 22334345566666555554444321111 1
Q ss_pred CCchhhhHHHHhHHHHHHHHHH
Q 020153 84 NNKKGRVQEALRYYSIESTLAL 105 (330)
Q Consensus 84 ~~~~~~~~~~l~~~r~D~~~g~ 105 (330)
.+....+.+..+.+.|...+.
T Consensus 142 -~~s~~l~a~~~~~~~D~~~s~ 162 (299)
T PRK09509 142 -TQSQAVRADMLHYQSDVMMNG 162 (299)
T ss_pred -hCCHHHHHHHHHHHHHHHHHH
Confidence 112234556667788887764
No 33
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=74.70 E-value=95 Score=30.90 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCChhHHHHHHHhhhhhh
Q 020153 7 GLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCII 65 (330)
Q Consensus 7 ~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~~~~l~~~vaiiGaTI 65 (330)
+-+...|....++..+.+.++...+..-|+|...... ..|+.++........-++-.+
T Consensus 146 ~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~ipv~v 203 (415)
T COG0814 146 GTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLF-ALPSASQSFWKYLLLAIPVFV 203 (415)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHh-cccccchhhHHHHHHHhhHHH
Confidence 3455677777777888888887777777877543222 245553233334444444433
No 34
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=74.59 E-value=41 Score=30.78 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=43.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccC-CChhHHHHHHHhhhhhhhhhHHHHhhhhhhhcccC
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPK-LSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDID 83 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~-~~~~~l~~~vaiiGaTI~P~~lfl~S~lv~~r~~~ 83 (330)
.+||.|+|.+...+.++..+......+. =....+. -|+ .+.......++.+|..+.-...++.. |...
T Consensus 51 pyG~~r~E~l~~l~~~~~l~~~~~~~~~--~si~~l~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~ 119 (268)
T TIGR01297 51 PFGHGRAEILAALLNGLFLVVVALFILY--EAIERLI----NPEPEIDGGTMLIVAIVGLIVNLILALYLH-----RVGH 119 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh----CCCCcccchhHHHHHHHHHHHHHHHHHHHH-----HhCc
Confidence 4789999999997666544422222221 1222222 233 22233334445555444444434331 2111
Q ss_pred CCchhhhHHHHhHHHHHHHHHHH
Q 020153 84 NNKKGRVQEALRYYSIESTLALV 106 (330)
Q Consensus 84 ~~~~~~~~~~l~~~r~D~~~g~~ 106 (330)
+.+....+.+....+.|...+..
T Consensus 120 ~~~s~~l~a~~~~~~~D~~~s~~ 142 (268)
T TIGR01297 120 RLGSLALRAAALHVLSDALSSVG 142 (268)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Confidence 12223345566667778766654
No 35
>PRK03557 zinc transporter ZitB; Provisional
Probab=73.79 E-value=47 Score=31.63 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCChhHHHHHHHhhhhhhhhhHHHHhhhhhhhcccCC
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDN 84 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~~~~l~~~vaiiGaTI~P~~lfl~S~lv~~r~~~~ 84 (330)
.+||.|+|.+...+.+++.+...+..+. |-.+.++-|.-+......+++.+|..+.-...++. .|. .+
T Consensus 80 pyG~~r~E~l~al~~~~~l~~~~~~i~~------eai~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~-~~ 147 (312)
T PRK03557 80 TFGWLRLTTLAAFVNAIALVVITILIVW------EAIERFRTPRPVAGGMMMAIAVAGLLANILSFWLL-----HHG-SE 147 (312)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHH-----hcc-cc
Confidence 5899999999987766555433322222 12222233432222333344444433332222321 121 11
Q ss_pred CchhhhHHHHhHHHHHHHHHHH
Q 020153 85 NKKGRVQEALRYYSIESTLALV 106 (330)
Q Consensus 85 ~~~~~~~~~l~~~r~D~~~g~~ 106 (330)
.+....+.+....+.|+..+..
T Consensus 148 ~~s~~l~a~~~h~~~D~l~s~~ 169 (312)
T PRK03557 148 EKNLNVRAAALHVLGDLLGSVG 169 (312)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 1122345556677888866553
No 36
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=73.12 E-value=1.1e+02 Score=30.95 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHH
Q 020153 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALI 195 (330)
Q Consensus 137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~ 195 (330)
-.++++..+|+ +..++-+++++.=+++|.+...+-++-..+=..+.|...+.+|++
T Consensus 339 tq~A~~~~~g~---~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~~k~~~~~~r~~ 394 (452)
T COG1115 339 TQAAFSSHLGS---WGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFGSKKAILLYRLI 394 (452)
T ss_pred HHHHHHHhcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 35689999999 899999999999999999988888776655544443223444444
No 37
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=72.26 E-value=1e+02 Score=30.23 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=39.4
Q ss_pred HHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhHhHHHH
Q 020153 158 IGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFAL 237 (330)
Q Consensus 158 iGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~~l~LP~~l 237 (330)
+.+..+..+....+.|+++.-+...+. |.+++++.... .++..+ ++.. + + ...+..+.+.+..++-|...
T Consensus 251 ~~~~l~~~~~n~~N~ys~~l~l~~l~~-~~~~~~~~~i~---~ii~~~-l~~~-~--~--~~~f~~FL~~lg~~~~P~~g 320 (386)
T TIGR02358 251 LIILLSTVTTTFMDIYSAAISTGNLLP-RLKVKHLAIGV---GVLGTL-IALL-F--P--VDKYENFLLLIGSVFAPLYA 320 (386)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH-hhcchHHHHHH---HHHHHH-HHHH-H--H--HHHHHHHHHHHHHHHHHHHH
Confidence 333344444445566776665555542 22222222222 223322 2222 1 1 22455677777788778777
Q ss_pred HHH--HHHHcCCcc
Q 020153 238 IPL--LYLVSQEHI 249 (330)
Q Consensus 238 i~L--l~l~n~r~i 249 (330)
+.+ .++.+|+++
T Consensus 321 I~i~Dy~l~rr~~~ 334 (386)
T TIGR02358 321 VVFVDFFVVKRRRL 334 (386)
T ss_pred HHHHHHheeecccc
Confidence 666 344455443
No 38
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=71.33 E-value=1e+02 Score=29.94 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHhhhhccCCCCccccCchhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhh
Q 020153 97 YSIESTLALVVSFMINL---FVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTY 173 (330)
Q Consensus 97 ~r~D~~~g~~v~~ii~~---aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~ 173 (330)
.-.|...|.+++.++-. +++..-+..+. ..+=.+.++...|+ ..+-++-+.+.-.-++++++...
T Consensus 34 ~G~~s~~gIivs~vlf~~~g~vim~ig~~f~---------a~~y~~~~~~v~~~---~~~ki~d~~iif~lf~~~vVM~A 101 (349)
T COG3949 34 YGVYSILGIILSTVLFTLSGAVIMTIGKKFN---------ATSYREILKYVSGP---KFAKIIDIIIIFFLFSTAVVMLA 101 (349)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---------ccchHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34568888877655322 22222222221 22335578888898 66668999999999999887766
Q ss_pred HHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHHhHhHHHHHHHHHHHcC------
Q 020153 174 AGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFD-TSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQ------ 246 (330)
Q Consensus 174 a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g-~~p~~l~~l~~~~qvi~~l~LP~~li~Ll~l~n~------ 246 (330)
.++...++.+| .|.|.-..+..++ +.++.+.+ .++. -.+|++..|+..+.++..++.
T Consensus 102 Gags~~~e~~~--lP~wiGali~i~~-----v~i~lfl~~vegi---------~tvn~iI~P~LIi~l~~v~~~~~f~~~ 165 (349)
T COG3949 102 GAGSLLEEMFG--LPYWIGALIIILL-----VLILLFLGRVEGI---------ITVNGIITPFLIIILVLVTLSFQFTNL 165 (349)
T ss_pred cchhHHHHHhC--ccHHHHHHHHHHH-----HHHHHHHhcccce---------eeeheeHHHHHHHHHHHHHHHHHHhhc
Confidence 66667777767 4566554443331 11223333 3322 345789999998887655432
Q ss_pred ---CcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020153 247 ---EHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSS 284 (330)
Q Consensus 247 ---r~iMG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~ 284 (330)
-++....+.+|+....+ -..+|+...++.+.+
T Consensus 166 ~~~a~~~~~~~~~W~~~~~~------Y~alNi~~~~avLv~ 200 (349)
T COG3949 166 GNAAQIVLTKQGNWKASAVG------YGALNILVAVAVLVP 200 (349)
T ss_pred cchhhhcCCcCCChHHHHHh------hhhHHHHhHhHhhhh
Confidence 12223344455544443 345565555555544
No 39
>PRK10249 phenylalanine transporter; Provisional
Probab=70.23 E-value=1.2e+02 Score=30.26 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=23.6
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153 135 VNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG 175 (330)
Q Consensus 135 ~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~ 175 (330)
+...+.++...++ +...++.+..+.+.+++.....+++
T Consensus 278 ~p~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (458)
T PRK10249 278 SPFVMIFHNLDSN---VVASALNFVILVASLSVYNSGVYSN 315 (458)
T ss_pred CcHHHHHHHcCch---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666 5666677777777666665554443
No 40
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=69.44 E-value=33 Score=34.41 Aligned_cols=35 Identities=26% Similarity=0.177 Sum_probs=24.4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153 138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG 175 (330)
Q Consensus 138 a~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~ 175 (330)
..+.+...++ +...++.++.+.+.+++.....+++
T Consensus 277 ~~~~~~~~~~---~~~~i~~~~~l~s~~s~~~~~~~~~ 311 (478)
T PF00324_consen 277 VIAAQYSGGP---WLAWIVNAGILISAFSSANASLYAA 311 (478)
T ss_pred hhhhhhcccc---cccceecccchhhhhhhhhhhhccc
Confidence 4455555566 6667888888888888877665554
No 41
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=69.02 E-value=1.3e+02 Score=30.26 Aligned_cols=14 Identities=7% Similarity=-0.109 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHH
Q 020153 290 LIATVIGVFTAGYV 303 (330)
Q Consensus 290 ~~~~~~~~~~~~y~ 303 (330)
+.+.+++.....|.
T Consensus 454 ~~~~~~~~g~~~y~ 467 (501)
T TIGR00911 454 VGFIIMLTGVPVYF 467 (501)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555666665
No 42
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=61.65 E-value=94 Score=27.66 Aligned_cols=73 Identities=14% Similarity=0.037 Sum_probs=33.3
Q ss_pred HhHhHHHHHHHHHHHcCCcccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh-HHHHHHHHHHHHHHH
Q 020153 230 SVQIPFALIPLLYLVSQEHIMG-TFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVL-IATVIGVFTAGYVAF 305 (330)
Q Consensus 230 ~l~LP~~li~Ll~l~n~r~iMG-~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~y~~~ 305 (330)
++...++...+.....+. +. +.|.+.|..+ ...+...+....++.+.+.+.+..++.. .++.+++.+++|.+.
T Consensus 120 ~i~~G~~~~~~~~~i~~~--~~~~~r~~~~k~~-~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~ 194 (206)
T PF06570_consen 120 SIVGGLVFYFIFKYIYPY--KKKKKRPSWWKYI-LISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALR 194 (206)
T ss_pred HHHHHHHHHHHHHHHhcc--cccccccHHHHHH-HHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHH
Confidence 333444444444443332 22 2344444444 3334444455556666666665555432 244444445554443
No 43
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=61.21 E-value=75 Score=32.88 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccC-CCCc-cccCchhHHHHHHHhcCCChhHHHH---HHHHHHHHhhhhhHhhh
Q 020153 100 ESTLALVVSFMINLFVTTVFAKGFYG-TEQA-NNIGLVNAGQYLQEKYGGGLFPILY---IWGIGLLAAGQSSTITG 171 (330)
Q Consensus 100 D~~~g~~v~~ii~~aili~~A~~l~~-~~~~-~~~~~~~aa~~L~p~~G~~~~~a~~---lFaiGL~aAg~sS~i~~ 171 (330)
....+..++++....+.++-+..+.+ .+.. +...-+..++.+.+.+|++ .+-. +-.+.++..|+++....
T Consensus 288 gIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k--~~v~~~~l~ii~~f~~gi~s~~a~ 362 (550)
T KOG1289|consen 288 GIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKK--GAVFLLSLIIIALFFMGISSLTAS 362 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCC--ceEehhHHHHHHHHHhhHHHHHHH
Confidence 33444455566655655555555531 1100 1222356688889999985 2222 23334444555554433
No 44
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=60.51 E-value=74 Score=30.33 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=54.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCC-ChhHHHHHHHhhhhhhhhhHHHHhhhhhhhcccC
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKL-SSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDID 83 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~-~~~~l~~~vaiiGaTI~P~~lfl~S~lv~~r~~~ 83 (330)
.+|+.|.|.+....++++.+......+.. .+... +.|+. +.+.+...+++++..++-+...+.- |...
T Consensus 74 pyGh~k~E~l~sl~~~~~i~~~g~~i~~~--a~~~~----~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~-----~~~k 142 (304)
T COG0053 74 PYGHGKAETLASLIVSILIFAAGFEILLE--AIKRL----ISPQPVEPPLLALGVALISIVIKEALYRYLR-----RVGK 142 (304)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH----hCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 58999999999977666665444433321 12222 33443 3456777788888887777666642 2222
Q ss_pred CCchhhhHHHHhHHHHHHHHHHHH
Q 020153 84 NNKKGRVQEALRYYSIESTLALVV 107 (330)
Q Consensus 84 ~~~~~~~~~~l~~~r~D~~~g~~v 107 (330)
+.+....+.+-.+.|-|...++.+
T Consensus 143 k~~S~aL~Ada~h~~sD~~ts~~~ 166 (304)
T COG0053 143 KTNSQALIADALHHRSDVLTSLAV 166 (304)
T ss_pred HhCCHHHHHHhHHHHHHHHHHHHH
Confidence 222223445566778888776644
No 45
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=59.33 E-value=1.9e+02 Score=28.73 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHH
Q 020153 220 VLNEWLNVLQSVQIPFALIPL 240 (330)
Q Consensus 220 ~l~~~~qvi~~l~LP~~li~L 240 (330)
.+..+...+..+.-|.+.+.+
T Consensus 358 ~~~~FL~~lg~~~~P~~gI~l 378 (442)
T TIGR00800 358 KFTTFLSSIGGFLSPIAGVMI 378 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777665
No 46
>PRK11017 codB cytosine permease; Provisional
Probab=55.75 E-value=2.1e+02 Score=28.14 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhHhHHHHHHH--HHHHcCCcc
Q 020153 220 VLNEWLNVLQSVQIPFALIPL--LYLVSQEHI 249 (330)
Q Consensus 220 ~l~~~~qvi~~l~LP~~li~L--l~l~n~r~i 249 (330)
....+.+.+..++-|...+.+ .++.+|++.
T Consensus 312 ~~~~FL~~lg~~l~P~~gI~i~Dy~l~rr~~~ 343 (404)
T PRK11017 312 NFVGWLTLLGSAIPPVGGVIIADYFMNRRGRY 343 (404)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhheeeeeccCc
Confidence 344566666677777776665 333344343
No 47
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=53.34 E-value=2.5e+02 Score=28.11 Aligned_cols=18 Identities=11% Similarity=-0.095 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhhhhH
Q 020153 151 PILYIWGIGLLAAGQSST 168 (330)
Q Consensus 151 ~a~~lFaiGL~aAg~sS~ 168 (330)
+...+..++...+.+++.
T Consensus 279 ~~~~i~~~~~~~~~l~~~ 296 (474)
T TIGR03813 279 WLGPILAFALAIGVLAGV 296 (474)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555544444443
No 48
>PRK10692 hypothetical protein; Provisional
Probab=51.76 E-value=99 Score=24.01 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 020153 252 TFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGI 314 (330)
Q Consensus 252 ~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 314 (330)
+......-|++..+-.++++.--.|.+.+.+++..-|-+..-. -++-++++.++||+=..+
T Consensus 3 Rk~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~g--al~~IFiGAllWL~GAri 63 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHG--ALLSIFVGALLWLAGARV 63 (92)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhh--HHHHHHHHHHHHHhcccc
Confidence 3334566788888888888877788888888776656543222 256678888999876443
No 49
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=50.58 E-value=2.7e+02 Score=27.82 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=15.4
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHH
Q 020153 249 IMGTFKIGPILKMVSWLVAVLVILI 273 (330)
Q Consensus 249 iMG~~~n~~~~~i~~~~~~~~i~~l 273 (330)
--|+++-+|+-..+.++.++-++..
T Consensus 412 ~~g~f~lg~~g~~vn~~a~~~~~~~ 436 (475)
T TIGR03428 412 PAGLFSLGRWGLPVNILAVVYGALM 436 (475)
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHH
Confidence 3567777877666666555544444
No 50
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=49.57 E-value=99 Score=23.86 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=41.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 020153 253 FKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGI 314 (330)
Q Consensus 253 ~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 314 (330)
......-|++..+-.++++.--.|.+.+.+++..-|-+..- ..++.++++.++||+=..+
T Consensus 4 k~a~~~GN~lMglGmv~Mv~gigysi~~~~~~L~Lp~~~~~--gal~~IFiGAllWL~GARi 63 (89)
T PF10762_consen 4 KNAFLLGNVLMGLGMVVMVGGIGYSILSQIPQLGLPQFLAH--GALFSIFIGALLWLVGARI 63 (89)
T ss_pred hhhHHHhhHHHHHhHHHHHHhHHHHHHHhcccCCCcHHHHh--hHHHHHHHHHHHHHhcccc
Confidence 33455678888888888887777888888877666654322 2356678888999886544
No 51
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=48.43 E-value=1.1e+02 Score=32.39 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=18.0
Q ss_pred ccCCChhHHHHHHHhhhhhhh---hhHH
Q 020153 46 VPKLSSKTIQQAVGVVGCIIM---PHNV 70 (330)
Q Consensus 46 ~P~~~~~~l~~~vaiiGaTI~---P~~l 70 (330)
.-+++-+.-++.+=++|-|+. |-|.
T Consensus 362 ~~slNYa~gFvlI~llhfTvATKQPAMT 389 (643)
T PF10136_consen 362 LASLNYALGFVLIHLLHFTVATKQPAMT 389 (643)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCChHhh
Confidence 333455677889999999987 6654
No 52
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=48.22 E-value=2.8e+02 Score=27.29 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=8.5
Q ss_pred hhHHHHHHHhcCC
Q 020153 135 VNAGQYLQEKYGG 147 (330)
Q Consensus 135 ~~aa~~L~p~~G~ 147 (330)
+...+..+..+|+
T Consensus 260 ~p~~~~~~~~~g~ 272 (442)
T TIGR00908 260 NPLPEALESIYGG 272 (442)
T ss_pred chHHHHHHHHhCC
Confidence 3556677777775
No 53
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=46.56 E-value=3.2e+02 Score=27.48 Aligned_cols=42 Identities=12% Similarity=-0.053 Sum_probs=27.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhh
Q 020153 138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGF 182 (330)
Q Consensus 138 a~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~ 182 (330)
...++..+.+ +...++..|+++|.+|+.-..-.+.+. +..+.
T Consensus 309 p~l~~~~lp~---~l~gl~~a~~~aA~mST~~s~l~~~ss~~~~Di 351 (483)
T PRK09442 309 PTLMLKVLPP---FAAGIFLAAPMAAIMSTVDSQLLQSSSTIIKDL 351 (483)
T ss_pred HHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777 777788999999999886554443332 34554
No 54
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=45.34 E-value=3.5e+02 Score=27.54 Aligned_cols=42 Identities=12% Similarity=-0.040 Sum_probs=27.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHH-Hhhh
Q 020153 138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFI-MGGF 182 (330)
Q Consensus 138 a~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v-~~g~ 182 (330)
....+..+++ +..-+...++++|..|+.-..-.+.+.. .++.
T Consensus 315 ~~l~~~~~p~---~~~g~~~~ailaAvmSt~ss~ll~~ss~~t~Di 357 (493)
T COG0591 315 PYLILALFPP---WIAGLLLAAILAAVMSTASSQLLVASSAITRDI 357 (493)
T ss_pred HHHHHHHChH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4555677787 7777888889999888866554443332 3443
No 55
>PRK12488 acetate permease; Provisional
Probab=44.84 E-value=3.7e+02 Score=27.72 Aligned_cols=9 Identities=33% Similarity=0.700 Sum_probs=5.5
Q ss_pred hhhhhhhhh
Q 020153 60 VVGCIIMPH 68 (330)
Q Consensus 60 iiGaTI~P~ 68 (330)
.+|+...||
T Consensus 271 ~lg~~~~p~ 279 (549)
T PRK12488 271 MFGTAGLPH 279 (549)
T ss_pred HHHhccCcH
Confidence 356656677
No 56
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=44.10 E-value=3.8e+02 Score=27.60 Aligned_cols=32 Identities=19% Similarity=-0.001 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhh
Q 020153 151 PILYIWGIGLLAAGQSSTITGTYAGQF-IMGGF 182 (330)
Q Consensus 151 ~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~ 182 (330)
+..-++..|+++|.+|+.-+...+.+. +.++.
T Consensus 366 ~l~gl~~ag~~aA~mSt~~s~l~a~st~~~~Di 398 (552)
T TIGR03648 366 WVIGLVAAGGLAAALSTAAGLLLVISSAISHDL 398 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999998886655444333 34444
No 57
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=41.17 E-value=3.6e+02 Score=26.56 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=10.5
Q ss_pred hcCCChhHHHHHHHHHHHHhhhhhH
Q 020153 144 KYGGGLFPILYIWGIGLLAAGQSST 168 (330)
Q Consensus 144 ~~G~~~~~a~~lFaiGL~aAg~sS~ 168 (330)
.+|+ +...+..++.+.+.+.+.
T Consensus 275 ~~g~---~~~~~~~~~~~~~~~~~~ 296 (445)
T PRK11357 275 ALGS---TAGIFVAITAMIVILGSL 296 (445)
T ss_pred hcch---HHHHHHHHHHHHHHHHHH
Confidence 4677 544444444444334443
No 58
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=40.97 E-value=3.8e+02 Score=26.75 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG 175 (330)
Q Consensus 137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~ 175 (330)
.++..+...|+ +...+..++...+.+++......++
T Consensus 270 ~~~~~~~~~g~---~~~~~i~i~~~is~~~~~~~~~~~~ 305 (473)
T TIGR00905 270 MAAVLEMIVGK---WGAVLISLGLIISVLGSLLSWTMLA 305 (473)
T ss_pred HHHHHHHHhCh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677888 7777788877777777766554443
No 59
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=40.69 E-value=3.8e+02 Score=26.69 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHH
Q 020153 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ 176 (330)
Q Consensus 137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~ 176 (330)
..+.++...|+ ++..++.++.+.+.+++.....+++.
T Consensus 266 ~~~~~~~~~g~---~~~~~i~~~~~is~~~~~~~~~~~~s 302 (468)
T TIGR03810 266 MAYVLEHMVGT---WGAVLINIGLIISILGAWLSWTLLPA 302 (468)
T ss_pred HHHHHHHHcch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888898 78888888888888888776666553
No 60
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=40.06 E-value=4.4e+02 Score=27.18 Aligned_cols=30 Identities=20% Similarity=0.091 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhH
Q 020153 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSST 168 (330)
Q Consensus 137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~ 168 (330)
+...+.+..++. +..-+++.|+++|.+|+.
T Consensus 342 ~~~~l~~~~~~~--~l~glv~A~~~AA~mST~ 371 (549)
T TIGR02711 342 AAVHLANAVGGN--LFLGFISAVAFATILAVV 371 (549)
T ss_pred HHHHHHHHHccH--HHHHHHHHHHHHHHHHHH
Confidence 343444444431 334466677777777654
No 61
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=37.91 E-value=1.5e+02 Score=21.52 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=22.8
Q ss_pred cccCchhHHHHH-HHhcCCChhHHHHHHHHHHHHhhhhhH
Q 020153 130 NNIGLVNAGQYL-QEKYGGGLFPILYIWGIGLLAAGQSST 168 (330)
Q Consensus 130 ~~~~~~~aa~~L-~p~~G~~~~~a~~lFaiGL~aAg~sS~ 168 (330)
+..+.+|+.+.+ +..+|+ +.-.+-++|+++.+.-..
T Consensus 29 ~~~~~~~~~~~l~~~p~G~---~ll~~vg~gli~~gi~~~ 65 (73)
T PF06724_consen 29 SDQGSQGALAWLLEQPFGR---WLLGAVGLGLIGYGIWQF 65 (73)
T ss_pred CCCCHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHHHHH
Confidence 344556665444 556888 776777777777765443
No 62
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=37.35 E-value=1.9e+02 Score=22.28 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHcCCcccCCCCchHHHHHHHHHHH
Q 020153 232 QIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVA 267 (330)
Q Consensus 232 ~LP~~li~Ll~l~n~r~iMG~~~n~~~~~i~~~~~~ 267 (330)
.+|+..-.++++.+|++ .++...-..+.+.+-++
T Consensus 17 ~~~~i~pli~~~~~k~~--~~~vr~ha~qal~~~i~ 50 (109)
T PF09685_consen 17 FLGFIGPLIVWIVKKDK--SPFVRFHAKQALNFQIT 50 (109)
T ss_pred HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHH
Confidence 34444433445666665 33433333444444333
No 63
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=36.54 E-value=5e+02 Score=26.82 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG 175 (330)
Q Consensus 137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~ 175 (330)
.+.+++..-++ ++..+..+|.+.+-+++..+..++.
T Consensus 301 ~~~a~~~~g~~---~~~~ii~~~~~~~~~~sl~~~~~~~ 336 (557)
T TIGR00906 301 FPVAFEYVGWG---PAKYIVAVGALCGMSTSLLGGMFPL 336 (557)
T ss_pred HHHHHHHcCch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556554334 6777888888877777766555543
No 64
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=36.51 E-value=5.1e+02 Score=26.92 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=26.4
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCc
Q 020153 136 NAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 185 (330)
Q Consensus 136 ~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~ 185 (330)
...+-+.+..++. +-..+++..+=+..+||+-+..+.-+...+|....
T Consensus 162 ~~~~~i~~l~~~~--~~~l~~g~~lt~l~~SS~A~i~i~~~l~~~glis~ 209 (533)
T COG1283 162 AFSDFIAKLSDDP--IVALLIGALLTALIQSSLAAIGILLSLTSQGLISL 209 (533)
T ss_pred hHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccch
Confidence 3355556666652 34456666666666666555544444445565443
No 65
>TIGR00909 2A0306 amino acid transporter.
Probab=35.21 E-value=4.3e+02 Score=25.71 Aligned_cols=37 Identities=16% Similarity=0.013 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHH
Q 020153 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ 176 (330)
Q Consensus 137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~ 176 (330)
.++..++..|+ +...+..++...+.+++......+..
T Consensus 266 ~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~s 302 (429)
T TIGR00909 266 LSLVGYDLGQG---IGGLILTAGAVFSIASVMLAGIYGTS 302 (429)
T ss_pred HHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777 77777888888877777766555543
No 66
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=33.02 E-value=3.2e+02 Score=26.13 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=34.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCChhHHHHHHHhhhhhhhhhHHH
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVF 71 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~~~~l~~~vaiiGaTI~P~~lf 71 (330)
.+||+|+|-+....-+++.++.. .+.. | |..+-++-|.-.++...+.+|++|=.+---..|
T Consensus 83 TfGy~R~eiLaa~~nav~Li~~s--~~I~---~-EAi~R~~~P~~i~~~~ml~va~~GL~vN~~~a~ 143 (296)
T COG1230 83 TFGYKRLEILAAFLNALLLIVVS--LLIL---W-EAIQRLLAPPPIHYSGMLVVAIIGLVVNLVSAL 143 (296)
T ss_pred CccHhHHHHHHHHHHHHHHHHHH--HHHH---H-HHHHHhcCCCCCCccchHHHHHHHHHHHHHHHH
Confidence 68999999988765444443222 1111 2 334443456543446677778888666544333
No 67
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=31.87 E-value=3.6e+02 Score=23.84 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=39.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc
Q 020153 253 FKIGPILKMVSWLVAVLVILINGYLLLEFFSSEV---NGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPK 324 (330)
Q Consensus 253 ~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 324 (330)
.+.+.+.-+.+|........+..+...+...+.. ++.....+-+....+.+.+-.+...++-.+.+....||
T Consensus 27 ~~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~~~~~~~~~~~~ 101 (214)
T PF11139_consen 27 PRRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRRPRPDPPSRPPR 101 (214)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCchh
Confidence 4445666778888888888888888877775332 23223333333444444555555555533334444444
No 68
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=27.25 E-value=6e+02 Score=24.85 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccC
Q 020153 292 ATVIGVFTAGYVAFIIYLVSRGITFSSWR 320 (330)
Q Consensus 292 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 320 (330)
..+..|....|...+-|+...|.+..+.+
T Consensus 316 ~lv~lPivL~Y~~~~Y~vF~gk~~~~~~~ 344 (346)
T COG1294 316 ALVFLPIVLAYTIWSYRVFRGKITYEEIY 344 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 45667888999999988888888765544
No 69
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=25.72 E-value=7e+02 Score=25.13 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=32.1
Q ss_pred HHHHHhhhhhhhhhHHHHhhhhhhhcccCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 020153 55 QQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGF 123 (330)
Q Consensus 55 ~~~vaiiGaTI~P~~lfl~S~lv~~r~~~~~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l 123 (330)
+.++|+++-+-.-|+.+.. .|+ +.+++. + +..-..++..+..+.-..+-+++-..+
T Consensus 231 f~a~g~iaFaf~gH~v~pe---Iq~---tMk~p~---~----f~~~~lis~~~~~~~y~~vai~GY~aF 286 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPE---IQH---TMKSPP---K----FKKALLISYIIVTFLYFPVAIIGYWAF 286 (437)
T ss_pred hhhhhheeeeecCCeeeee---hHh---hcCCch---h----hhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 7899999988888888753 121 211111 1 445556666665555555555444444
No 70
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=25.18 E-value=5.9e+02 Score=24.10 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=14.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHH
Q 020153 5 PFGLVLLLLLSIVLIATMALSF 26 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~f 26 (330)
++|-|...|+...+..++.+.+
T Consensus 131 ~~Gi~~i~r~~~i~~~~~i~~~ 152 (359)
T TIGR00912 131 RKGIEVLLRTAEILLIIFLILF 152 (359)
T ss_pred HccHHHHHHHHHHHHHHHHHHH
Confidence 4577778887776666655553
No 71
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=24.84 E-value=7.4e+02 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=20.9
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Q 020153 8 LVLLLL--LSIVLIATMALSFAWMFGETKP 35 (330)
Q Consensus 8 yr~~E~--~~~~lv~~m~l~fi~~~~~~~P 35 (330)
-+++|+ +...+++++.+.|++.-|..+.
T Consensus 242 ae~le~S~~l~~lig~lg~~y~~~~F~~~g 271 (438)
T TIGR00366 242 AEKLENSRVLALLIGALGIIYLGMYFYEKG 271 (438)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456664 6777889999999988885544
No 72
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=24.77 E-value=6e+02 Score=24.05 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcCCChhHHHHHHHHHHH
Q 020153 99 IESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLL 161 (330)
Q Consensus 99 ~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G~~~~~a~~lFaiGL~ 161 (330)
.|.+.+.+++++....+..+-+......+ + ++..+..+..+|+ +.+.+++...+
T Consensus 34 ~~~wi~~ll~~~~~~~~~~~~~~l~~~~p---~---~~~~~~~~~~~Gk---~~g~~~~~~~~ 87 (359)
T TIGR00912 34 QDGWISIILGGLIIIFLLCLMIKIMSKFP---E---KNFSEILSKYLGK---ILGRLLSILFI 87 (359)
T ss_pred CCeeHHHHHHHHHHHHHHHHHHHHHHHCC---C---CCHHHHHHHHhhH---HHHHHHHHHHH
Confidence 37778888888877765555554332211 1 2467788889998 77766555433
No 73
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=24.25 E-value=6.9e+02 Score=24.58 Aligned_cols=35 Identities=17% Similarity=-0.074 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhH
Q 020153 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYA 174 (330)
Q Consensus 137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a 174 (330)
..+.++...++ ++..+..++.+.+.+++.....++
T Consensus 273 ~~~~~~~~g~~---~~~~ii~~~~~~~~~~~~~~~~~~ 307 (452)
T TIGR01773 273 YVAVLELLGIP---HAKLIMDFVVLTAVLSCLNSALYT 307 (452)
T ss_pred HHHHHHHcCCh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544445 555566665555555554444333
No 74
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=23.76 E-value=1.5e+02 Score=18.92 Aligned_cols=28 Identities=7% Similarity=-0.104 Sum_probs=20.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 020153 5 PFGLVLLLLLSIVLIATMALSFAWMFGE 32 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~ 32 (330)
++.-.++||+..+.+-+|.+.-+...+.
T Consensus 3 kkkKS~fekiT~v~v~lM~i~tvg~v~~ 30 (35)
T PF13253_consen 3 KKKKSTFEKITMVVVWLMLILTVGSVVA 30 (35)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445679999998888888876665543
No 75
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=23.34 E-value=8.3e+02 Score=25.16 Aligned_cols=25 Identities=12% Similarity=-0.086 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Q 020153 7 GLVLLLLLSIVLIATMALSFAWMFG 31 (330)
Q Consensus 7 ~yr~~E~~~~~lv~~m~l~fi~~~~ 31 (330)
..|++|..-..++-++.+.+.+=+.
T Consensus 192 ~Ir~~~~~a~p~~~~~~~gl~Iw~~ 216 (497)
T COG1953 192 SIRKFETWAGPLVYIAMLGLAIWAL 216 (497)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHH
Confidence 4578888888777777776655443
No 76
>PRK15049 L-asparagine permease; Provisional
Probab=23.13 E-value=7.9e+02 Score=24.84 Aligned_cols=37 Identities=24% Similarity=0.108 Sum_probs=23.5
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153 136 NAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG 175 (330)
Q Consensus 136 ~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~ 175 (330)
...+.++...++ ++..+..+.++.+.+++.....+++
T Consensus 290 P~~~~~~~~g~~---~~~~ii~~~ilia~~ss~ns~~~~~ 326 (499)
T PRK15049 290 PFVTFFSKLGVP---YIGSIMNIVVLTAALSSLNSGLYCT 326 (499)
T ss_pred HHHHHHHHcCch---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665555 5666777777777777766555544
No 77
>PF04896 AmoC: Ammonia monooxygenase/methane monooxygenase, subunit C; InterPro: IPR006980 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The C subunit from Methylococcus capsulatus str. Bath resides primarily in the membrane and consists of five transmembrane helices. Several conserved residues contribute to a metal binding centre [].; PDB: 1YEW_G 3RFR_K 3RGB_G 3CHX_C.
Probab=22.79 E-value=4.5e+02 Score=24.38 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020153 237 LIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVN 287 (330)
Q Consensus 237 li~Ll~l~n~r~iMG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~~ 287 (330)
+.--++.++||++..--.-.-.++.......+.+.+.++|.-.+.+..+++
T Consensus 77 ~~g~lWktrdr~~~~l~p~eE~rR~~~~~~wl~vya~avywgaSfFtEQDg 127 (251)
T PF04896_consen 77 LWGYLWKTRDRNLDQLTPREELRRYFTLWMWLVVYAVAVYWGASFFTEQDG 127 (251)
T ss_dssp HHHHHHHTS-STGTT--CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhcccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhheeeccCC
Confidence 344577888888765333334445555555667778888888888866543
No 78
>PRK11021 putative transporter; Provisional
Probab=22.71 E-value=7.1e+02 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=23.4
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhH
Q 020153 135 VNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYA 174 (330)
Q Consensus 135 ~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a 174 (330)
+...+.+++.+|+ +...++.+..+.+.+++.....++
T Consensus 246 ~~~~~~~~~~~G~---~~~~ii~i~~~~s~~~~~~~~~~~ 282 (410)
T PRK11021 246 ASLPGIFVQLFGG---YALWVICVIGYLACFASVNIYTQS 282 (410)
T ss_pred ccHHHHHHHHhCc---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888898 666667776666666665443333
No 79
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=21.70 E-value=4.2e+02 Score=23.64 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhccccccc
Q 020153 297 VFTAGYVAFIIYLVSRGITFSSW 319 (330)
Q Consensus 297 ~~~~~y~~~~~~~~~~~~~~~~~ 319 (330)
.++++....++|..+++.++...
T Consensus 129 ~~~~~~~~~i~y~l~~~~~~~a~ 151 (222)
T PF01036_consen 129 LVSCAAFLYIVYLLFGPLRRAAS 151 (222)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555667777766554443
No 80
>PRK13747 putative mercury resistance protein; Provisional
Probab=20.51 E-value=3.8e+02 Score=20.19 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 020153 291 IATVIGVFTAGYVAFIIYLVSRGITF 316 (330)
Q Consensus 291 ~~~~~~~~~~~y~~~~~~~~~~~~~~ 316 (330)
.+.++++.+..++.|.++...|..+.
T Consensus 51 ~w~iaal~lt~LFvlsl~~~lra~~~ 76 (78)
T PRK13747 51 HWGIAALTLTGLFVLSVTRLLRAFRG 76 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37788888999999999888876543
No 81
>TIGR00930 2a30 K-Cl cotransporter.
Probab=20.24 E-value=1.2e+03 Score=25.98 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhHHH
Q 020153 152 ILYIWGIGLLAAGQSSTITGTYAGQ 176 (330)
Q Consensus 152 a~~lFaiGL~aAg~sS~i~~~~a~~ 176 (330)
...+..+|.+.+.++|.....+++.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~as 410 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAP 410 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888776655544
No 82
>PF14329 DUF4386: Domain of unknown function (DUF4386)
Probab=20.15 E-value=4.2e+02 Score=23.35 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 020153 255 IGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRG 313 (330)
Q Consensus 255 n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 313 (330)
.+||..+.+.+........++. ..+.++........+..+..+..+.+.+|+.++.
T Consensus 159 ~Pr~l~~lg~v~g~~~l~~~~~---~~~~~~~~~~~~~~~~i~~~~~el~~~iWLl~~G 214 (215)
T PF14329_consen 159 LPRWLGALGLVAGIGYLADSLL---ALLGPDYASSVGPLLAIPGFLGELGLAIWLLIKG 214 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3677777665555444433322 2222331222345677788999999999998864
Done!