Query 020153
Match_columns 330
No_of_seqs 178 out of 1288
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 12:34:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 95.8 1.4 4.7E-05 41.9 24.5 37 136-175 259-295 (444)
2 2jln_A MHP1; hydantoin, transp 95.6 1.9 6.5E-05 42.5 25.2 99 138-248 284-388 (501)
3 3dh4_A Sodium/glucose cotransp 93.4 6.5 0.00022 38.8 19.6 49 133-184 305-354 (530)
4 4djk_A Probable glutamate/gamm 89.0 17 0.00057 34.9 23.5 25 151-175 288-312 (511)
5 2a65_A Leutaa, Na(+):neurotran 83.4 37 0.0013 33.5 19.2 34 151-185 339-373 (519)
6 3l1l_A Arginine/agmatine antip 73.2 60 0.002 30.2 27.3 39 135-176 260-298 (445)
7 2xq2_A Sodium/glucose cotransp 66.2 1.1E+02 0.0037 30.4 22.4 46 135-183 336-382 (593)
8 3j1z_P YIIP, cation efflux fam 36.2 44 0.0015 30.3 5.3 20 5-24 74-93 (306)
9 3h90_A Ferrous-iron efflux pum 35.4 32 0.0011 30.6 4.2 21 5-25 65-85 (283)
10 1yew_C Particulate methane mon 29.9 2E+02 0.0068 25.8 8.1 51 237-287 107-157 (289)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.78 E-value=1.4 Score=41.88 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=27.0
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153 136 NAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG 175 (330)
Q Consensus 136 ~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~ 175 (330)
..++..++..|+ +...+..++.+.+.+++..+..+++
T Consensus 259 ~~~~~~~~~~g~---~~~~~i~~~~~~~~~~~~~~~~~~~ 295 (444)
T 3gia_A 259 ALAVAAKPFLGN---LGFLLISIGALFSISSAMNATIYGG 295 (444)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888887 7777888888888887776655543
No 2
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=95.65 E-value=1.9 Score=42.47 Aligned_cols=99 Identities=21% Similarity=0.199 Sum_probs=49.9
Q ss_pred HHHHHHhc-CCChhHH-HHHHH-HHHHHhhhhhHhh-hhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCC
Q 020153 138 GQYLQEKY-GGGLFPI-LYIWG-IGLLAAGQSSTIT-GTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDT 213 (330)
Q Consensus 138 a~~L~p~~-G~~~~~a-~~lFa-iGL~aAg~sS~i~-~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~ 213 (330)
.+.+...+ ++ .. ..+.. +.++.+-++..+. +.++++.-++....+..+. |+. +..+.++.. +++ ..+
T Consensus 284 ~~~l~~~l~~~---~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~--~~~-~~i~~vi~~-~i~-~~~- 354 (501)
T 2jln_A 284 VIAITEVVGGV---SIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTF--KTG-VIVSAVVGL-LMM-PWQ- 354 (501)
T ss_dssp HHHHHHHHTCC---CHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCH--HHH-HHHHHHHHH-HTC-GGG-
T ss_pred HHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccccch--hHH-HHHHHHHHH-HHH-HHH-
Confidence 44555543 44 23 33444 5555555566664 6788777777765432222 222 112222221 111 122
Q ss_pred CcchhHHHHHHHHHHHHhHhHHHHHHH--HHHHcCCc
Q 020153 214 SEDMLDVLNEWLNVLQSVQIPFALIPL--LYLVSQEH 248 (330)
Q Consensus 214 ~p~~l~~l~~~~qvi~~l~LP~~li~L--l~l~n~r~ 248 (330)
+ ...+..+...+..++-|...+.+ .++.++++
T Consensus 355 ~---~~~f~~FL~~lg~~l~P~~gI~l~Dy~i~rr~~ 388 (501)
T 2jln_A 355 F---AGVLNTFLNLLASALGPLAGIMISDYFLVRRRR 388 (501)
T ss_dssp T---HHHHHHHHHHHHHTTHHHHHHHHHHHHTTSTTC
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 1 23566677777788888887776 34445543
No 3
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=93.44 E-value=6.5 Score=38.81 Aligned_cols=49 Identities=14% Similarity=-0.113 Sum_probs=31.9
Q ss_pred CchhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhhcC
Q 020153 133 GLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGFLN 184 (330)
Q Consensus 133 ~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~l~ 184 (330)
+.+++.-.+-..+++ +..-++..|+++|.+|+.-....+.+. +.+++.+
T Consensus 305 ~~d~~~p~l~~~lp~---~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Diy~ 354 (530)
T 3dh4_A 305 NADKAYPWLTQFLPV---GVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYK 354 (530)
T ss_dssp SGGGHHHHHHTTCCT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CcchHHHHHHHHcch---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Confidence 344443333347777 667788899999999987666555544 3566643
No 4
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=88.98 E-value=17 Score=34.91 Aligned_cols=25 Identities=8% Similarity=-0.158 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153 151 PILYIWGIGLLAAGQSSTITGTYAG 175 (330)
Q Consensus 151 ~a~~lFaiGL~aAg~sS~i~~~~a~ 175 (330)
+...++.++.+.+.+++..+..+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (511)
T 4djk_A 288 WTVRVISALLLLGVLAEIASWIVGP 312 (511)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777765554443
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=83.40 E-value=37 Score=33.53 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhHHH-HHHhhhcCc
Q 020153 151 PILYIWGIGLLAAGQSSTITGTYAGQ-FIMGGFLNL 185 (330)
Q Consensus 151 ~a~~lFaiGL~aAg~sS~i~~~~a~~-~v~~g~l~~ 185 (330)
.-..+|-+-++-+|++|.+...-.-- .++|++ ++
T Consensus 339 ~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~-~~ 373 (519)
T 2a65_A 339 FLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KL 373 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CC
T ss_pred chHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh-CC
Confidence 44567888899999999875544332 234443 54
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=73.22 E-value=60 Score=30.20 Aligned_cols=39 Identities=15% Similarity=-0.094 Sum_probs=29.7
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHH
Q 020153 135 VNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ 176 (330)
Q Consensus 135 ~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~ 176 (330)
+...+..+...|+ +...++.++.+.+.+++..+..+++.
T Consensus 260 ~p~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~s 298 (445)
T 3l1l_A 260 SPFGDAARMALGD---TAGAIVSFCAAAGCLGSLGGWTLLAG 298 (445)
T ss_dssp CTHHHHHHHHHCT---THHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred cHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888898 78888888888888888776655543
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=66.18 E-value=1.1e+02 Score=30.38 Aligned_cols=46 Identities=15% Similarity=-0.121 Sum_probs=29.3
Q ss_pred hhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhhc
Q 020153 135 VNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGFL 183 (330)
Q Consensus 135 ~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~l 183 (330)
+++--.+...+++ +...++..|+++|.+|+.-....+.+. +.+++.
T Consensus 336 d~~~p~l~~~lp~---~l~gl~~a~llaA~mST~~s~l~a~st~~~~Diy 382 (593)
T 2xq2_A 336 DKAYPWLTQFLPV---GVKGVVFAALAAAIVSSLASMLNSTATIFTMDIY 382 (593)
T ss_dssp GGHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred hhHHHHHHHHcCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333356676 777789999999998887665555443 345553
No 8
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=36.17 E-value=44 Score=30.27 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=15.1
Q ss_pred CcchHHHHHHHHHHHHHHHH
Q 020153 5 PFGLVLLLLLSIVLIATMAL 24 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l 24 (330)
.+||+|.|.+...+.+++.+
T Consensus 74 pyG~~R~E~l~al~~~~~l~ 93 (306)
T 3j1z_P 74 RYGHGKAEPLAALAQSAFIM 93 (306)
T ss_dssp SSCCTTHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHH
Confidence 57999999988866655444
No 9
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=35.41 E-value=32 Score=30.65 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=16.2
Q ss_pred CcchHHHHHHHHHHHHHHHHH
Q 020153 5 PFGLVLLLLLSIVLIATMALS 25 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~l~ 25 (330)
.+||.|.|.+...+.+++.+.
T Consensus 65 pyG~~r~E~l~~l~~~~~l~~ 85 (283)
T 3h90_A 65 SFGHGKAESLAALAQSMFISG 85 (283)
T ss_dssp SSCSTTHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHH
Confidence 579999999988766665553
No 10
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=29.94 E-value=2e+02 Score=25.80 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020153 237 LIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVN 287 (330)
Q Consensus 237 li~Ll~l~n~r~iMG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~~ 287 (330)
+.--++-++||++..--.---.++...+...+.+-+.++|.-.+++..+++
T Consensus 107 l~g~lWkTRdr~l~~ltP~eE~rR~~~l~~wl~vy~~avYWgaSfFtEQDg 157 (289)
T 1yew_C 107 LWGYLWKTRDRNLAALTPREELRRNFTHLVWLVAYAWAIYWGASYFTEQDG 157 (289)
T ss_dssp HHHHHHHTCCSCCSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHheeeecccccccCCcHHHHHHHHHHHHHHHHHHHHHHhhheeeecccC
Confidence 344567799998654332234455556666677788889988888876654
Done!