Query 020153
Match_columns 330
No_of_seqs 178 out of 1288
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 12:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020153.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020153hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 69.4 40 0.0029 30.4 24.0 33 152-184 336-368 (509)
2 d1rutx4 g.39.1.3 (X:114-146) L 18.3 19 0.0014 19.9 0.9 9 321-329 5-13 (33)
3 d1rh5b_ f.23.28.1 (B:) Preprot 10.2 90 0.0066 19.5 2.6 25 292-316 29-53 (56)
4 d1h2sa_ f.13.1.1 (A:) Sensory 8.6 4E+02 0.029 20.5 7.0 19 298-316 129-147 (225)
5 d1uaza_ f.13.1.1 (A:) Archaerh 3.9 8E+02 0.058 18.8 7.3 22 299-320 147-168 (236)
6 d2qfia2 f.59.1.1 (A:5-208) Fer 3.4 22 0.0016 28.0 -4.6 19 5-23 68-86 (204)
7 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 3.4 2E+02 0.015 18.3 1.2 13 68-80 55-67 (67)
8 d1r57a_ d.108.1.1 (A:) Hypothe 3.0 2E+02 0.015 19.4 1.0 20 25-44 76-95 (102)
9 d1wpga4 f.33.1.1 (A:1-124,A:24 2.6 1.3E+03 0.096 19.0 8.8 82 225-306 372-459 (472)
10 d1ejxb_ b.85.3.1 (B:) Urease, 2.3 2.2E+02 0.016 19.8 0.5 16 312-327 32-47 (101)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=69.42 E-value=40 Score=30.40 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcC
Q 020153 152 ILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLN 184 (330)
Q Consensus 152 a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~ 184 (330)
-..+|-+.++.+|++|.+...-.--...++.++
T Consensus 336 ~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~~ 368 (509)
T d2a65a1 336 LGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK 368 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHhcC
Confidence 445888899999999977654443333334334
No 2
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.32 E-value=19 Score=19.92 Aligned_cols=9 Identities=44% Similarity=0.907 Sum_probs=7.3
Q ss_pred CCCccCCCC
Q 020153 321 AHPKLVPGT 329 (330)
Q Consensus 321 ~~~~~~~~~ 329 (330)
-|+|||||.
T Consensus 5 C~n~LVPGD 13 (33)
T d1rutx4 5 CRNRLVPGD 13 (33)
T ss_dssp TCCBCCTTC
T ss_pred ccccccCCc
Confidence 378999996
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.24 E-value=90 Score=19.54 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 020153 292 ATVIGVFTAGYVAFIIYLVSRGITF 316 (330)
Q Consensus 292 ~~~~~~~~~~y~~~~~~~~~~~~~~ 316 (330)
.+-+..+....++|.+|++..|+++
T Consensus 29 v~~iG~~i~G~IGf~I~li~~~i~~ 53 (56)
T d1rh5b_ 29 VTALGISLLGIIGYIIHVPATYIKG 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566667778888888888888754
No 4
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=8.64 E-value=4e+02 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 020153 298 FTAGYVAFIIYLVSRGITF 316 (330)
Q Consensus 298 ~~~~y~~~~~~~~~~~~~~ 316 (330)
++++....++|..+.+..+
T Consensus 129 ~s~~~~~~i~y~l~~~~~~ 147 (225)
T d1h2sa_ 129 MGAVAFLGLVYYLVGPMTE 147 (225)
T ss_dssp HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555666655544
No 5
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=3.91 E-value=8e+02 Score=18.76 Aligned_cols=22 Identities=5% Similarity=0.247 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhcccccccC
Q 020153 299 TAGYVAFIIYLVSRGITFSSWR 320 (330)
Q Consensus 299 ~~~y~~~~~~~~~~~~~~~~~~ 320 (330)
+++....++|....+.++...+
T Consensus 147 ~~~~~~~i~y~l~~~~~~~~~~ 168 (236)
T d1uaza_ 147 STICMIVVLYFLATSLRAAAKE 168 (236)
T ss_dssp HHHHHHHHHHHHHTHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555444433
No 6
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=3.43 E-value=22 Score=28.04 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=13.7
Q ss_pred CcchHHHHHHHHHHHHHHH
Q 020153 5 PFGLVLLLLLSIVLIATMA 23 (330)
Q Consensus 5 ~~~yr~~E~~~~~lv~~m~ 23 (330)
.+||.|.|.+.....+++.
T Consensus 68 pyG~~r~E~l~~l~~~~~l 86 (204)
T d2qfia2 68 SFGHGKAESLAALAQSMFI 86 (204)
T ss_dssp SCSCCTHHHHHHHTTTTTT
T ss_pred CcchhHHHHHHHHHHHHHH
Confidence 4688999999886554433
No 7
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.37 E-value=2e+02 Score=18.28 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=8.4
Q ss_pred hHHHHhhhhhhhc
Q 020153 68 HNVFLHSALVQSR 80 (330)
Q Consensus 68 ~~lfl~S~lv~~r 80 (330)
+++|+|+.+.++|
T Consensus 55 ~~iYLQt~LA~er 67 (67)
T d1k1fa_ 55 RMIYLQTLLAKEK 67 (67)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccC
Confidence 5677777765543
No 8
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=2.97 E-value=2e+02 Score=19.37 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.8
Q ss_pred HHHHHHhhcCCCHHhhhccc
Q 020153 25 SFAWMFGETKPSGSELLIGI 44 (330)
Q Consensus 25 ~fi~~~~~~~P~~~~v~~g~ 44 (330)
.|+...+.-+|+|.+++.++
T Consensus 76 ~y~~~~~~k~pey~dv~~~~ 95 (102)
T d1r57a_ 76 SFAKHMLEKEDSYQDVYLGL 95 (102)
T ss_dssp HHHHHHHHHCGGGTTTBCCC
T ss_pred HhHHHHHHhCccHHHHhcCc
Confidence 68888888999999999985
No 9
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.64 E-value=1.3e+03 Score=18.97 Aligned_cols=82 Identities=6% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHHhHhHHHHHHHHHHHcCCcc------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 020153 225 LNVLQSVQIPFALIPLLYLVSQEHI------MGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVF 298 (330)
Q Consensus 225 ~qvi~~l~LP~~li~Ll~l~n~r~i------MG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~~~~~~~~~~~~~ 298 (330)
.+.-.....-++..-+...-+.|+. .|-++|.++.-.+....++.+...-+=.+-+.+....-++..|.+.+++
T Consensus 372 ~~a~T~~F~~lv~~q~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~ 451 (472)
T d1wpga4 372 PEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKI 451 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTHHHHTCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCCCHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 020153 299 TAGYVAFI 306 (330)
Q Consensus 299 ~~~y~~~~ 306 (330)
+++++...
T Consensus 452 ~~~~~~~~ 459 (472)
T d1wpga4 452 SLPVIGLD 459 (472)
T ss_dssp HTHHHHHH
T ss_pred HHHHHHHH
No 10
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=2.29 E-value=2.2e+02 Score=19.75 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=0.0
Q ss_pred hcccccccCCCCccCC
Q 020153 312 RGITFSSWRAHPKLVP 327 (330)
Q Consensus 312 ~~~~~~~~~~~~~~~~ 327 (330)
||++++||..|...-|
T Consensus 32 RpIQVGSH~HF~E~N~ 47 (101)
T d1ejxb_ 32 RPIQVGSHYHFAEVNP 47 (101)
T ss_dssp SCEEEETTSCGGGSCT
T ss_pred cceeeccccChHHcCc
Done!