Query 020154
Match_columns 330
No_of_seqs 242 out of 926
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:27:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 7.6E-47 1.6E-51 364.9 9.2 233 49-302 137-408 (549)
2 COG4299 Uncharacterized protei 100.0 1.4E-39 3E-44 305.1 16.9 217 54-313 6-245 (371)
3 PF07786 DUF1624: Protein of u 99.8 5.4E-18 1.2E-22 154.8 13.8 136 55-217 1-141 (223)
4 COG3503 Predicted membrane pro 99.6 8E-15 1.7E-19 140.2 14.2 137 54-216 14-155 (323)
5 COG2311 Predicted membrane pro 99.3 9.7E-12 2.1E-16 123.7 12.2 139 48-217 5-159 (394)
6 PRK10835 hypothetical protein; 98.8 3.7E-08 8.1E-13 97.7 12.2 79 59-143 1-95 (373)
7 PF10129 OpgC_C: OpgC protein; 98.2 2.3E-06 5E-11 84.8 6.2 83 55-141 1-86 (358)
8 COG4645 Uncharacterized protei 97.7 9.4E-05 2E-09 72.8 7.6 83 49-135 17-102 (410)
9 PF01757 Acyl_transf_3: Acyltr 97.3 0.005 1.1E-07 55.7 12.9 83 57-140 2-91 (340)
10 PRK03854 opgC glucans biosynth 97.3 0.0015 3.3E-08 64.2 9.8 89 51-140 4-101 (375)
11 COG3274 Predicted O-acyltransf 95.3 0.38 8.1E-06 47.5 13.1 57 53-109 2-65 (332)
12 COG1835 Predicted acyltransfer 92.1 0.11 2.4E-06 51.3 3.0 65 49-119 8-74 (386)
13 COG3594 NolL Fucose 4-O-acetyl 87.9 0.81 1.8E-05 45.6 5.0 50 53-108 2-54 (343)
14 PF05857 TraX: TraX protein; 72.2 51 0.0011 30.1 10.7 102 58-180 2-103 (219)
15 COG5062 Uncharacterized membra 57.6 33 0.00073 34.8 6.8 136 53-219 108-247 (429)
16 PRK13706 conjugal transfer pil 37.1 2.9E+02 0.0063 26.6 9.5 65 58-133 32-96 (248)
17 TIGR02755 TraX_Ftype type-F co 35.7 3.9E+02 0.0084 25.3 10.9 65 58-133 8-72 (224)
18 PRK13882 conjugal transfer pro 32.4 4.3E+02 0.0094 24.9 10.3 72 58-135 10-81 (232)
19 COG3619 Predicted membrane pro 29.8 3.1E+02 0.0067 25.9 8.3 56 85-142 50-105 (226)
20 PF11654 DUF2665: Protein of u 25.3 76 0.0016 23.0 2.6 19 99-117 9-27 (47)
21 COG3476 Tryptophan-rich sensor 24.9 4.8E+02 0.01 23.5 8.2 58 79-144 33-94 (161)
22 COG4763 Predicted membrane pro 20.1 30 0.00065 34.6 -0.4 58 49-109 15-76 (388)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.6e-47 Score=364.95 Aligned_cols=233 Identities=46% Similarity=0.707 Sum_probs=192.9
Q ss_pred CCCcCChhhHHHHHHHHHHHHHHHHhccCcccccCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHH
Q 020154 49 PQHQQRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAIL 128 (330)
Q Consensus 49 ~~~~~~Ri~sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~r 128 (330)
.++.++|+.|+|++||+++++||+||..|+.||+.+|++|||++++|+++|+|+||+|+|+++|+++...|....+|..-
T Consensus 137 la~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmPfFLfIvGVsials~K~~s~rf~a~rKa~~ 216 (549)
T KOG4683|consen 137 LATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMPFFLFIVGVSIALSVKSQSSRFSATRKAKA 216 (549)
T ss_pred cCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHH
Confidence 55667899999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHH
Q 020154 129 RALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALV 208 (330)
Q Consensus 129 R~l~Lf~lGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yli~all~l~l~~~~~~~~~~~~~~~~~~q~~~~~~ 208 (330)
|..+|++.|+++++++.++.+++|++.|.+++|++|||||+|++|+++|++.+++.++ .+++.+ +|-++...
T Consensus 217 R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~~--~~~~~S------~~R~V~~~ 288 (549)
T KOG4683|consen 217 RICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCRP--ISPQRS------WQRAVHDV 288 (549)
T ss_pred HHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccCC--Cccccc------hhhhhhHH
Confidence 9999999999999988888899999999999999999999999999999999876642 111211 22233333
Q ss_pred HHHHHH------------HHHHhcccCCCCCCCCccCCCCCCcccccccccCCCCC-CCCcHHHHHHHHhcCCCCCcCCC
Q 020154 209 LTTLYL------------LLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTG-PACNAVGMIDRKILGIQHLYRKP 275 (330)
Q Consensus 209 lL~~y~------------~ll~~l~vPg~~~~~~~~~~g~~~~~~~~~cg~~g~~~-~~~N~a~~IDr~vLG~~HlY~~p 275 (330)
.+..|- .++|..-+|+||-+| ..+||.+|... |.||++||.||++||.+|+||+|
T Consensus 289 ~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~------------~~~~G~~~~~~~P~CnAvGy~DrqvLGi~HiY~hP 356 (549)
T KOG4683|consen 289 CLFSGELAVLLALVATYLGLTFGLRVPGCPRGY------------LGPGGKHDYNAHPKCNAVGYADRQVLGIAHIYQHP 356 (549)
T ss_pred HHHHHHHHHHHHhhhhhhceecccccCCCCccc------------ccCCcccccCCCCCccchhhhHHhhhhhHHHhcCc
Confidence 344444 444555555554443 34466666665 67999999999999999999988
Q ss_pred CCC--------------------------CCCCccCCchhHHHHHHHHHHHHH
Q 020154 276 IYS--------------------------RTKVSPFNNLVSITFQYFIVLLAM 302 (330)
Q Consensus 276 ~~~--------------------------~dpeg~l~~l~~~~~~~~~~~~a~ 302 (330)
+++ +||||+++++.+ ++|+..++++|
T Consensus 357 ~~~r~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~a-vv~~llG~h~G 408 (549)
T KOG4683|consen 357 TAKRVKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILA-VVQVLLGAHAG 408 (549)
T ss_pred hHHHhhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHH-HHHHHHHhhcC
Confidence 542 589999999999 77788888854
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.4e-39 Score=305.12 Aligned_cols=217 Identities=33% Similarity=0.377 Sum_probs=183.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHhccC---cccccCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHHHH
Q 020154 54 RRLISLDVFRGLTVALMILVDDVG---GILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRA 130 (330)
Q Consensus 54 ~Ri~sLD~lRGlAI~~MIlvn~~g---~~~~~l~ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~rR~ 130 (330)
-|+.|+|++||+++++||+||+.+ ..|+++.|++|.|+|.+|++||+|+|++|.+|++|..|..+.+....++.||.
T Consensus 6 ~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RRa 85 (371)
T COG4299 6 FRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRRA 85 (371)
T ss_pred hhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHHH
Confidence 699999999999999999999964 36889999999999999999999999999999999988887778889999999
Q ss_pred HHHHHHHHHHhhccccccccccccc-cccchhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHH
Q 020154 131 LNLFLLGIFLQGGFFHGINNLKYGV-DIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALVL 209 (330)
Q Consensus 131 l~Lf~lGlll~~~~~~~~~~~~~~~-~~~~~r~~GVLqrIgl~Yli~all~l~l~~~~~~~~~~~~~~~~~~q~~~~~~l 209 (330)
..+|++|+++++++... ++ .+ +.+..|.+||||||++||+++++...+++ .|+||++++++
T Consensus 86 a~~f~Lg~Lm~~F~~~~-~w---s~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~--------------~r~q~~laavL 147 (371)
T COG4299 86 AERFALGYLMGAFVTVR-DW---SVTSHSLTRGMGVLQRIALAYLFAALLVRQLR--------------GRWQALLAAVL 147 (371)
T ss_pred HHHHHHHHHhhhccccc-ee---eeeechhhHHHHHHHHHHHHHHHHHHHHHhcC--------------hHHHHHHHHHH
Confidence 99999999999754321 11 22 36789999999999999999999986664 78999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCccCCCCCCcccccccccCCCCCCCCcHHHHHHHHhcCCCCCcCCCCCCCCCCccCCchh
Q 020154 210 TTLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTGPACNAVGMIDRKILGIQHLYRKPIYSRTKVSPFNNLV 289 (330)
Q Consensus 210 L~~y~~ll~~l~vPg~~~~~~~~~~g~~~~~~~~~cg~~g~~~~~~N~a~~IDr~vLG~~HlY~~p~~~~dpeg~l~~l~ 289 (330)
+++||+.+...|+|+.| ++..+|+..++|+.+.+.+|+|.++. ++||||++++++
T Consensus 148 L~gYwl~lm~~p~P~~~------------------------l~~~Gn~g~~~d~l~i~~~hLy~~dG-~~dpeGLlstvP 202 (371)
T COG4299 148 LAGYWLFLMFTPHPAAP------------------------LGGIGNVGESADPLQILNDHLYSADG-GFDPEGLLSTVP 202 (371)
T ss_pred HHHHHHHHhhcCCCccc------------------------cccccccccccchhhhhhhhhhcccC-CCCchhhhhcch
Confidence 99999999988999732 33456899999999999999999876 489999999998
Q ss_pred HHHHH-------------------HHHHHHHHHHHHHHHHHHH
Q 020154 290 SITFQ-------------------YFIVLLAMICLSLMFLLSH 313 (330)
Q Consensus 290 ~~~~~-------------------~~~~~~a~~~~~~~~~~~~ 313 (330)
++..+ -..++.+|+++.+....|.
T Consensus 203 ttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~ 245 (371)
T COG4299 203 TTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWA 245 (371)
T ss_pred HHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhccccc
Confidence 85531 1233346666766666665
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.77 E-value=5.4e-18 Score=154.80 Aligned_cols=136 Identities=33% Similarity=0.412 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCccc-cc-Cc-CC--CCchhhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHHH
Q 020154 55 RLISLDVFRGLTVALMILVDDVGGIL-PA-IN-HS--PWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILR 129 (330)
Q Consensus 55 Ri~sLD~lRGlAI~~MIlvn~~g~~~-~~-l~-ha--~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~rR 129 (330)
|+.++|++||+|+++|+++|...... .. .+ +. .+....+.|.++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 89999999999999999999975421 11 11 11 123345779999999999999999998877665 888999
Q ss_pred HHHHHHHHHHHhhccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHHH
Q 020154 130 ALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALVL 209 (330)
Q Consensus 130 ~l~Lf~lGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yli~all~l~l~~~~~~~~~~~~~~~~~~q~~~~~~l 209 (330)
++.|+++|++++... +...++...++||||+||+|+++++++. .++ .+..+++++++
T Consensus 77 ~~~l~~~g~~i~~~~--------~~~~~~~~i~~gIL~~ig~~~ll~~~~~-~~~--------------~~~~~~~~~~~ 133 (223)
T PF07786_consen 77 GLKLFLLGLLINLLT--------FFFFPEGFIYFGILQFIGLSMLLAALFL-RLP--------------RRALLILALLL 133 (223)
T ss_pred HHHHHHHHHHHHHHH--------HHhcCCceeehhHHHHHHHHHHHHHHHH-hcc--------------hhHHHHHHHHH
Confidence 999999999998531 1123466679999999999999988773 222 34455556666
Q ss_pred HHHHHHHH
Q 020154 210 TTLYLLLL 217 (330)
Q Consensus 210 L~~y~~ll 217 (330)
+++++.+.
T Consensus 134 ~~~~~~l~ 141 (223)
T PF07786_consen 134 LALSWLLS 141 (223)
T ss_pred HHHHHHHh
Confidence 66666554
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=8e-15 Score=140.20 Aligned_cols=137 Identities=25% Similarity=0.319 Sum_probs=103.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHhccCcc--cccCcCC-CCch--hhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHH
Q 020154 54 RRLISLDVFRGLTVALMILVDDVGGI--LPAINHS-PWNG--LTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAIL 128 (330)
Q Consensus 54 ~Ri~sLD~lRGlAI~~MIlvn~~g~~--~~~l~ha-~W~G--~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~r 128 (330)
+|+.+||++||++|+.|++.|+.-+. ....+-+ .-.| ..++..|+|.|+|++|+|..++..|+..+ .+++.|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 79999999999999999999975331 1111111 0011 24678999999999999999998776653 789999
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHH
Q 020154 129 RALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALV 208 (330)
Q Consensus 129 R~l~Lf~lGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yli~all~l~l~~~~~~~~~~~~~~~~~~q~~~~~~ 208 (330)
|.++|..++++++..- + + .-+++++++||||.||+++++...+. ++| .-.+..++++
T Consensus 91 RgL~l~~l~l~It~~T-----w--f-~~P~sfI~fgILh~igLa~ll~~~fl-~lP--------------~~~~l~~a~~ 147 (323)
T COG3503 91 RGLKLAALALAITAVT-----W--F-AFPDSFIFFGILHAIGLASLLGAAFL-WLP--------------RAVLLALAVA 147 (323)
T ss_pred HHHHHHHHHHHHHHee-----e--E-ecCCceehHHHHHHHHHHHHHHHHHH-hCc--------------hHHHHHHHHH
Confidence 9999999999998541 1 1 23488999999999999999988774 444 2256667788
Q ss_pred HHHHHHHH
Q 020154 209 LTTLYLLL 216 (330)
Q Consensus 209 lL~~y~~l 216 (330)
+++++.++
T Consensus 148 ~v~~~~lL 155 (323)
T COG3503 148 AVAAHILL 155 (323)
T ss_pred HHHhHHhc
Confidence 88888755
No 5
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.33 E-value=9.7e-12 Score=123.68 Aligned_cols=139 Identities=27% Similarity=0.383 Sum_probs=97.9
Q ss_pred CCCCcCChhhHHHHHHHHHHHHHHHHhccCccccc----CcCCCC-chh-----hHHHH-----HHHHHHHHHHHHHHhh
Q 020154 48 RPQHQQRRLISLDVFRGLTVALMILVDDVGGILPA----INHSPW-NGL-----TLADF-----VMPFFLFIVGVSLALT 112 (330)
Q Consensus 48 ~~~~~~~Ri~sLD~lRGlAI~~MIlvn~~g~~~~~----l~ha~W-~G~-----t~~Dl-----vfP~FlFl~GvSi~ls 112 (330)
.|..+++|+.++|++||+|+++++++|...+.+|. .-+..| .+. -+.|+ +.|+|.|++|+++.+.
T Consensus 5 ~p~~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~~ 84 (394)
T COG2311 5 QPTAQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAMM 84 (394)
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Confidence 35566799999999999999999999986443321 112222 211 11222 5799999999999999
Q ss_pred cccCCchh-hhHHHHHHHHHHHHHHHHHHhhccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcc
Q 020154 113 YKNFPCKV-VATRKAILRALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSS 191 (330)
Q Consensus 113 ~~r~~~k~-~~~~~i~rR~l~Lf~lGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yli~all~l~l~~~~~~~~ 191 (330)
.+|..+|+ +.....+||..+|+++|++|....|. .+|-+.|.+++++.+...++
T Consensus 85 ~~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW~--------------------GDIL~~Ya~~g~ill~~~~~----- 139 (394)
T COG2311 85 LRRAARKGRRWVALYARRLLLLLLLGLIHALFIWD--------------------GDILLAYALTGLILLLFRRR----- 139 (394)
T ss_pred HHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHHHHHhc-----
Confidence 98877665 45567899999999999999854332 57889999999888665432
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
Q 020154 192 KLSLFRKYRGHWVVALVLTTLYLLLL 217 (330)
Q Consensus 192 ~~~~~~~~~~q~~~~~~lL~~y~~ll 217 (330)
+.++.+..+..+++.+.++.
T Consensus 140 ------~~k~l~~~~~~l~l~~~~~~ 159 (394)
T COG2311 140 ------KPKTLLIWATALLLLPVLLG 159 (394)
T ss_pred ------cccHHHHHHHHHHHHHHHHH
Confidence 24455555555565555443
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.81 E-value=3.7e-08 Score=97.66 Aligned_cols=79 Identities=23% Similarity=0.206 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhccCccccc-------CcC--CCCchh--h-----HHHHHHHHHHHHHHHHHHhhcccCCchhhh
Q 020154 59 LDVFRGLTVALMILVDDVGGILPA-------INH--SPWNGL--T-----LADFVMPFFLFIVGVSLALTYKNFPCKVVA 122 (330)
Q Consensus 59 LD~lRGlAI~~MIlvn~~g~~~~~-------l~h--a~W~G~--t-----~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~ 122 (330)
+|++||+|+++++++|......+. ..+ +.++.. . +...++|+|.+++|+++.+..+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999975332211 110 111211 1 12346799999999999999864322
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 020154 123 TRKAILRALNLFLLGIFLQGG 143 (330)
Q Consensus 123 ~~~i~rR~l~Lf~lGlll~~~ 143 (330)
...||+..|+++|++|...
T Consensus 77 --~~~rRl~~Ll~~GliH~~l 95 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLL 95 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999743
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.19 E-value=2.3e-06 Score=84.77 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCcccccCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCch---hhhHHHHHHHHH
Q 020154 55 RLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCK---VVATRKAILRAL 131 (330)
Q Consensus 55 Ri~sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k---~~~~~~i~rR~l 131 (330)
|...||.+||++++.|++-|.+++.+..+++.++ .+.|- +..|+|++|++..+.+.|+.+| ....+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~~---Gfsda-AE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRNF---GFSDA-AEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhccccc---cCCCc-chhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 7788999999999888777777765544555444 34443 6689999999999999776543 357789999999
Q ss_pred HHHHHHHHHh
Q 020154 132 NLFLLGIFLQ 141 (330)
Q Consensus 132 ~Lf~lGlll~ 141 (330)
.|...-+.+.
T Consensus 77 ~lY~a~i~l~ 86 (358)
T PF10129_consen 77 QLYVAHIALF 86 (358)
T ss_pred HHHHHHHHHH
Confidence 8887766554
No 8
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=9.4e-05 Score=72.75 Aligned_cols=83 Identities=28% Similarity=0.415 Sum_probs=63.3
Q ss_pred CCCcCChhhHHHHHHHHHHHHHHHHhccCcccccCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCch-hh--hHHH
Q 020154 49 PQHQQRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCK-VV--ATRK 125 (330)
Q Consensus 49 ~~~~~~Ri~sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k-~~--~~~~ 125 (330)
.+...+|...||++||++++.|.+-|.++..+..++|.+. | +.|- +-.|+|++|.+..+.+.|+.-+ ++ ...|
T Consensus 17 ~~v~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf-g--fsda-AEaFVliSGllvgmaYsrKf~~ggrla~~lk 92 (410)
T COG4645 17 RAVPMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF-G--FSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTLK 92 (410)
T ss_pred ccCccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc-c--cccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHHH
Confidence 4445689999999999999988777777766666777765 3 4443 5579999999999998776543 23 4458
Q ss_pred HHHHHHHHHH
Q 020154 126 AILRALNLFL 135 (330)
Q Consensus 126 i~rR~l~Lf~ 135 (330)
+.||+..|..
T Consensus 93 iWrRA~~LY~ 102 (410)
T COG4645 93 IWRRAMVLYV 102 (410)
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 9
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.31 E-value=0.005 Score=55.74 Aligned_cols=83 Identities=24% Similarity=0.356 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHhccCcccccCcCCCCchh-------hHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHHH
Q 020154 57 ISLDVFRGLTVALMILVDDVGGILPAINHSPWNGL-------TLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILR 129 (330)
Q Consensus 57 ~sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W~G~-------t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~rR 129 (330)
.++|.+||++++++++.|.......... ..+... .......|+|.+++|+.+.-..+++.+..+..+|-++|
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~~~~~~~~~~~~~~~~R~~r 80 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPF-QGWPIFDSFSIFLFIGRFAVPLFFFISGYLLARSSKSRKSWKKFLKKRFLR 80 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccccc-ccchhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 5799999999999999998653211110 111000 34456789999999999981111222223344444555
Q ss_pred HHHHHHHHHHH
Q 020154 130 ALNLFLLGIFL 140 (330)
Q Consensus 130 ~l~Lf~lGlll 140 (330)
....+++..++
T Consensus 81 l~~~~~~~~~~ 91 (340)
T PF01757_consen 81 LLIPYLFWSLI 91 (340)
T ss_pred HhHHHHHHHHH
Confidence 54444444333
No 10
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=97.27 E-value=0.0015 Score=64.20 Aligned_cols=89 Identities=20% Similarity=0.112 Sum_probs=58.7
Q ss_pred CcCChhhHHHHHHHHHHHHHHHHhccCcc--ccc----CcCCCCchh--hHHH-HHHHHHHHHHHHHHHhhcccCCchhh
Q 020154 51 HQQRRLISLDVFRGLTVALMILVDDVGGI--LPA----INHSPWNGL--TLAD-FVMPFFLFIVGVSLALTYKNFPCKVV 121 (330)
Q Consensus 51 ~~~~Ri~sLD~lRGlAI~~MIlvn~~g~~--~~~----l~ha~W~G~--t~~D-lvfP~FlFl~GvSi~ls~~r~~~k~~ 121 (330)
++++|...+|.+||+++++.++.|..... ... .+.+.|.+. ...+ ...|+|.+++|+....+.+|+ +.++
T Consensus 4 ~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~~ 82 (375)
T PRK03854 4 VPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPKR 82 (375)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHH
Confidence 34679999999999999999999874210 000 111122111 0111 347999999999988876544 3356
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 020154 122 ATRKAILRALNLFLLGIFL 140 (330)
Q Consensus 122 ~~~~i~rR~l~Lf~lGlll 140 (330)
..++-++|.+.-++++.++
T Consensus 83 f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 83 WLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 6777788888777777554
No 11
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=95.31 E-value=0.38 Score=47.55 Aligned_cols=57 Identities=21% Similarity=0.487 Sum_probs=40.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHhccCc-cccc-CcCC-CC---chh-hHHHHHHHHHHHHHHHHH
Q 020154 53 QRRLISLDVFRGLTVALMILVDDVGG-ILPA-INHS-PW---NGL-TLADFVMPFFLFIVGVSL 109 (330)
Q Consensus 53 ~~Ri~sLD~lRGlAI~~MIlvn~~g~-~~~~-l~ha-~W---~G~-t~~DlvfP~FlFl~GvSi 109 (330)
.+|+.++|.+|++|++..+.+|.... .+.. +.+. .| |++ +..-.+.|+|..+.|.-+
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL~ 65 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYLF 65 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999998543 1222 2222 14 443 345568899999999754
No 12
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=92.14 E-value=0.11 Score=51.30 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=43.3
Q ss_pred CCCcCChhhHHHHHHHHHHHHHHHHhccCcccccCcCCCC--chhhHHHHHHHHHHHHHHHHHHhhcccCCch
Q 020154 49 PQHQQRRLISLDVFRGLTVALMILVDDVGGILPAINHSPW--NGLTLADFVMPFFLFIVGVSLALTYKNFPCK 119 (330)
Q Consensus 49 ~~~~~~Ri~sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W--~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k 119 (330)
....++|+.++|.+||+|.++.++.|......+. +..+ +|..-.| +|..++|+-+.-++.++.++
T Consensus 8 ~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~~g~~gVd----iFFvlSGfli~~~~~~~~~~ 74 (386)
T COG1835 8 INSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVGRGVLGVD----LFFVLSGFLITRSLLRSAAA 74 (386)
T ss_pred ccccccccCCcHHHHHHHHHHHHHHHccccccCC--CCcccccccccee----EeeeccHHHHHHHHHHHhhc
Confidence 3334679999999999999999999976532211 1111 2222334 59999999999987554433
No 13
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=87.93 E-value=0.81 Score=45.60 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=37.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHhccCcccccCcCCCCch---hhHHHHHHHHHHHHHHHH
Q 020154 53 QRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNG---LTLADFVMPFFLFIVGVS 108 (330)
Q Consensus 53 ~~Ri~sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W~G---~t~~DlvfP~FlFl~GvS 108 (330)
++|..++|+.||+-|++.++-|..+..++ |.- .....+-+|+|.|++|+-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 68999999999999999999997663221 321 123344589999999974
No 14
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=72.16 E-value=51 Score=30.09 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHHHH
Q 020154 58 SLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRALNLFLLG 137 (330)
Q Consensus 58 sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~rR~l~Lf~lG 137 (330)
|-|.+.=+|++.|++-|..-.. .....| -..+..+.+|+|.|+..-+..-. +..+|..+|.+.. |
T Consensus 2 s~~~LK~iA~i~M~iDHi~~~~---~~~~~~-~~~iGR~afPlF~f~~~eG~~~T--------~n~~kY~~RL~~~---a 66 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIGFLF---FPDGPW-LRIIGRIAFPLFAFLLVEGFFHT--------RNRKKYLLRLLIF---A 66 (219)
T ss_pred chhHHHHHHHHHHHHHhhcccc---cCcchH-HHHhhHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHH---H
Confidence 5688899999999998766221 122223 11255778999999988776542 2346677776544 4
Q ss_pred HHHhhccccccccccccccccchhhhhHHHHHHHHHHHHHHHH
Q 020154 138 IFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCE 180 (330)
Q Consensus 138 lll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yli~all~ 180 (330)
++-+..+.-. .. ........+|+--++++..+...+.
T Consensus 67 lis~ip~~l~-----~~-~~~~~~~~NI~fTl~lg~~~l~~~~ 103 (219)
T PF05857_consen 67 LISQIPFDLA-----FG-KFFDWLSQNILFTLALGLLALYLLD 103 (219)
T ss_pred HHHHHHHHHH-----hh-cccccccccHHHHHHHHHHHHHHHH
Confidence 4433221000 00 1112334566666677666666554
No 15
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=57.61 E-value=33 Score=34.75 Aligned_cols=136 Identities=17% Similarity=0.276 Sum_probs=78.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHhccCc--ccc-cCc-CCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHH
Q 020154 53 QRRLISLDVFRGLTVALMILVDDVGG--ILP-AIN-HSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAIL 128 (330)
Q Consensus 53 ~~Ri~sLD~lRGlAI~~MIlvn~~g~--~~~-~l~-ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~r 128 (330)
.+|...+|..|+..+..-+..=...+ .+| .+. ...| |.+.-|+..-.|+|-.|+--. |.++ ++.+|
T Consensus 108 ~~~~~~it~yR~~i~~~tviaIlAvDFp~fprRlgKsetw-GtsLMDiGVGSFvynsGivs~----Raks-----K~~lk 177 (429)
T COG5062 108 PYTSMAITRYRFLIIGCTVIAILAVDFPFFPRRLGKSETW-GTSLMDIGVGSFVYNSGIVST----RAKS-----KRKLK 177 (429)
T ss_pred ccchhhhHHHHHHHHHhhhhheeeeccccchHhhhhhhcc-cceeeecccceeEeccceeec----ccCc-----cHHHH
Confidence 45788999999876644443222221 122 122 2235 777789888889888886432 2332 34788
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhHHHHHHHH
Q 020154 129 RALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALV 208 (330)
Q Consensus 129 R~l~Lf~lGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~Yli~all~l~l~~~~~~~~~~~~~~~~~~q~~~~~~ 208 (330)
-+++|+.+|++=... . .+++ -.++.|-.||=+-.-+...++.+...+.. .+....++..
T Consensus 178 n~lillflGflR~f~--v--k~ln---yqvhvrEyGvhwNFfftLgllnl~~~fir--------------~r~nflLg~f 236 (429)
T COG5062 178 NALILLFLGFLRYFS--V--KLLN---YQVHVREYGVHWNFFFTLGLLNLASLFIR--------------TRANFLLGFF 236 (429)
T ss_pred hhhHHHHHHHHHHHH--H--HHhc---cccccHHheeehhHHHHHHHHHHHHHHhh--------------hhHhHHHHHH
Confidence 999999999975421 0 0111 23556667776665555555555543332 3334666777
Q ss_pred HHHHHHHHHHh
Q 020154 209 LTTLYLLLLYG 219 (330)
Q Consensus 209 lL~~y~~ll~~ 219 (330)
+..+|-+++-.
T Consensus 237 i~l~he~lLkf 247 (429)
T COG5062 237 ICLTHELLLKF 247 (429)
T ss_pred HHHHHHHHHHh
Confidence 77777766644
No 16
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=37.14 E-value=2.9e+02 Score=26.60 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHH
Q 020154 58 SLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRALNL 133 (330)
Q Consensus 58 sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~rR~l~L 133 (330)
++|.+.=+|++.|++-|...... ....|- ..+.-+.||+|.|.-|+=++.-- +..+|..+|.+..
T Consensus 32 ~~dlLK~IAli~M~iDHi~~~~~---~~~~~l-~~iGRlAfPiFafVeGfNla~hT-------~~r~kY~~RL~if 96 (248)
T PRK13706 32 QRDIIKTVALVLMVLDHINRILH---LDQEWM-FLAGRGAFPLFALVWGLNLSRHA-------HIRQPAINRLWGW 96 (248)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhC---CcHHHH-HHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHH
Confidence 58999999999999977543211 111221 12456789999996665433221 2346677776544
No 17
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=35.75 E-value=3.9e+02 Score=25.31 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHH
Q 020154 58 SLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRALNL 133 (330)
Q Consensus 58 sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~rR~l~L 133 (330)
.+|.+.=+|++.|++-|...... ...+|- ..+..+.||+|.+.-|+=++.- . +..+|..+|.+..
T Consensus 8 ~~dlLK~IAli~M~iDHi~~~~~---~~~~~l-~~iGR~AfPiF~lveGfNla~~----T---~~r~kY~~RL~~f 72 (224)
T TIGR02755 8 QRDVIKTVALVLMVGDHINTIFQ---LDQEWL-FLAGRGAFPLFALVWGLNLSRH----T---HIRQHAINRLWGW 72 (224)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhC---CcHHHH-HHHHHHHHHHHHHHHHHhhccc----c---chHHHHHHHHHHH
Confidence 57999999999999977543211 111231 1245678999996666533321 1 2235666665433
No 18
>PRK13882 conjugal transfer protein TrbP; Provisional
Probab=32.43 E-value=4.3e+02 Score=24.89 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHH
Q 020154 58 SLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRALNLFL 135 (330)
Q Consensus 58 sLD~lRGlAI~~MIlvn~~g~~~~~l~ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~rR~l~Lf~ 135 (330)
+.|.+.=+|++.|++-|...-..+. +...| ..+.-+.||+|.|+...=++= ......+..+|..+|.+..-+
T Consensus 10 ~~~~LK~IAli~M~iDHi~~~~~~~-~~~~~--~~iGR~AfPiF~f~lv~nl~~---eGf~hT~n~~kY~~RL~ifAl 81 (232)
T PRK13882 10 TREALKWLALLLMTGDHVNKYLFNG-TLPVL--FEAGRVALPLFVFVLAYNLAR---PGALERGDYGRTMKRLALFGL 81 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCC-ChHHH--HHhhHHHHHHHHHHHHHhhcc---ccchhcccHHHHHHHHHHHHH
Confidence 4688999999999997754311110 01112 235677899999997632221 011112335677777654433
No 19
>COG3619 Predicted membrane protein [Function unknown]
Probab=29.79 E-value=3.1e+02 Score=25.94 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=37.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 020154 85 HSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRALNLFLLGIFLQG 142 (330)
Q Consensus 85 ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~r~~~k~~~~~~i~rR~l~Lf~lGlll~~ 142 (330)
-..++.....+...|++.|++|+...-.++|+..+ ...-.+.+...++.+++....
T Consensus 50 l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~ 105 (226)
T COG3619 50 LAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLAL 105 (226)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHH
Confidence 34444445678899999999998888777655443 233355566666666666653
No 20
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=25.35 E-value=76 Score=22.97 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 020154 99 PFFLFIVGVSLALTYKNFP 117 (330)
Q Consensus 99 P~FlFl~GvSi~ls~~r~~ 117 (330)
|+|...+|++.+....++.
T Consensus 9 P~~av~iG~~ayyl~e~R~ 27 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYENRE 27 (47)
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 8999999999999987654
No 21
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=24.94 E-value=4.8e+02 Score=23.54 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=37.3
Q ss_pred ccccCcCCCCchhhHHHHHH----HHHHHHHHHHHHhhcccCCchhhhHHHHHHHHHHHHHHHHHHhhcc
Q 020154 79 ILPAINHSPWNGLTLADFVM----PFFLFIVGVSLALTYKNFPCKVVATRKAILRALNLFLLGIFLQGGF 144 (330)
Q Consensus 79 ~~~~l~ha~W~G~t~~Dlvf----P~FlFl~GvSi~ls~~r~~~k~~~~~~i~rR~l~Lf~lGlll~~~~ 144 (330)
.|..++..+|+ +-|..| +.--+++|+|.++..++....+. .|-...++++-+++|..|
T Consensus 33 wy~~L~kP~w~---pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~-----~~~~~~ly~~ql~ln~aw 94 (161)
T COG3476 33 WYNNLKKPFWL---PPEWAFPPVWTVLYALIGISAYLVWEKGPGQGT-----SWLLMFLYLLQLILNFAW 94 (161)
T ss_pred HHHhccCCCCC---ChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCch-----hHHHHHHHHHHHHHHHHH
Confidence 46667777885 334333 44677889999999876654322 444566777777777543
No 22
>COG4763 Predicted membrane protein [Function unknown]
Probab=20.08 E-value=30 Score=34.55 Aligned_cols=58 Identities=21% Similarity=0.447 Sum_probs=38.0
Q ss_pred CCCcCChhhHHHHHHHHHHHHHHHHhccCccccc---CcCCCCchhhHHH-HHHHHHHHHHHHHH
Q 020154 49 PQHQQRRLISLDVFRGLTVALMILVDDVGGILPA---INHSPWNGLTLAD-FVMPFFLFIVGVSL 109 (330)
Q Consensus 49 ~~~~~~Ri~sLD~lRGlAI~~MIlvn~~g~~~~~---l~ha~W~G~t~~D-lvfP~FlFl~GvSi 109 (330)
-+..|+|..=+|...|++|++.++.|..-..|+. +.|. -++ +.| +=+|.|..+.|.-.
T Consensus 15 famnk~rm~W~d~aKGlsI~lVV~~h~~~~~y~g~~tf~h~-l~~--~l~p~rmP~Ffl~sg~F~ 76 (388)
T COG4763 15 FAMNKQRMLWIDQAKGLSICLVVIYHSVITFYPGGTTFQHP-LSE--VLSPCRMPYFFLYSGPFR 76 (388)
T ss_pred cccCcccCcchhhhcCeeEEeeeeehheeeecCCCchhHhH-HHH--hhchhhhHHHHHHhhHHH
Confidence 3445789999999999999999998875444432 2221 111 333 23788888877643
Done!