Query 020154
Match_columns 330
No_of_seqs 242 out of 926
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 19.6 1.5E+02 0.005 18.4 3.7 21 299-319 8-28 (32)
2 3n2f_G Na+/K+ ATPase gamma sub 19.3 43 0.0015 21.2 1.3 28 85-112 4-31 (31)
3 2jo1_A Phospholemman; FXYD1, N 15.4 1.4E+02 0.0048 22.4 3.4 29 85-113 10-38 (72)
4 2zxe_G FXYD10, phospholemman-l 15.2 1.1E+02 0.0039 23.0 2.9 30 85-114 13-42 (74)
5 2jp3_A FXYD domain-containing 14.2 1.3E+02 0.0043 22.4 2.9 28 86-113 12-39 (67)
6 2l9u_A Receptor tyrosine-prote 4.6 5.7E+02 0.02 16.6 2.6 18 57-74 8-25 (40)
7 2k9j_B Integrin beta-3; transm 3.4 1E+03 0.036 15.5 3.6 19 293-311 10-28 (43)
8 2knc_B Integrin beta-3; transm 3.0 1.1E+03 0.038 17.3 3.5 14 296-309 14-27 (79)
9 1dsq_A Nucleic acid binding pr 3.0 5.6E+02 0.019 14.6 1.3 12 244-255 7-18 (26)
10 2keg_A PLNK; protein, peptide, 2.6 1.1E+03 0.038 14.4 2.4 17 257-273 15-31 (32)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=19.62 E-value=1.5e+02 Score=18.41 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020154 299 LLAMICLSLMFLLSHFFIAMQ 319 (330)
Q Consensus 299 ~~a~~~~~~~~~~~~~~~~~~ 319 (330)
++||++..+-||+.++|+---
T Consensus 8 viaglvalltflafgfwlfky 28 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999998543
No 2
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=19.33 E-value=43 Score=21.22 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 020154 85 HSPWNGLTLADFVMPFFLFIVGVSLALT 112 (330)
Q Consensus 85 ha~W~G~t~~DlvfP~FlFl~GvSi~ls 112 (330)
+.+|+.+....+++-.-+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 4567777777788888899999887764
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=15.36 E-value=1.4e+02 Score=22.36 Aligned_cols=29 Identities=24% Similarity=0.514 Sum_probs=24.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 020154 85 HSPWNGLTLADFVMPFFLFIVGVSLALTY 113 (330)
Q Consensus 85 ha~W~G~t~~DlvfP~FlFl~GvSi~ls~ 113 (330)
+-+|.-+...-++|...+|++|+.+.+|-
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcC
Confidence 34676667778899999999999999995
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=15.21 E-value=1.1e+02 Score=23.00 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020154 85 HSPWNGLTLADFVMPFFLFIVGVSLALTYK 114 (330)
Q Consensus 85 ha~W~G~t~~DlvfP~FlFl~GvSi~ls~~ 114 (330)
|-+|..+...-++|-..+|++|+.+.+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 346766777889999999999999999953
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=14.19 E-value=1.3e+02 Score=22.36 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=23.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 020154 86 SPWNGLTLADFVMPFFLFIVGVSLALTY 113 (330)
Q Consensus 86 a~W~G~t~~DlvfP~FlFl~GvSi~ls~ 113 (330)
-+|+-+...-++|...+|++|+.+.+|-
T Consensus 12 YDY~tLRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 12 YDWESLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHheecchhhHHHHHHHHHHHHHcC
Confidence 4566666778899999999999999995
No 6
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=4.56 E-value=5.7e+02 Score=16.57 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 020154 57 ISLDVFRGLTVALMILVD 74 (330)
Q Consensus 57 ~sLD~lRGlAI~~MIlvn 74 (330)
.++.+.-|++++.|++-.
T Consensus 8 malt~i~gl~vif~~lg~ 25 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGG 25 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 467788899999888743
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=3.44 E-value=1e+03 Score=15.47 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020154 293 FQYFIVLLAMICLSLMFLL 311 (330)
Q Consensus 293 ~~~~~~~~a~~~~~~~~~~ 311 (330)
..+.++..++++++.+.++
T Consensus 10 ~~Iv~gvi~~ivliGl~lL 28 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAAL 28 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 3456667777776665543
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=3.05 E-value=1.1e+03 Score=17.32 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 020154 296 FIVLLAMICLSLMF 309 (330)
Q Consensus 296 ~~~~~a~~~~~~~~ 309 (330)
.+++.+|++++.+.
T Consensus 14 v~gvi~gilliGll 27 (79)
T 2knc_B 14 LLSVMGAILLIGLA 27 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554443
No 9
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=2.96 E-value=5.6e+02 Score=14.65 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=8.9
Q ss_pred ccccCCCCCCCC
Q 020154 244 TCGVRGSTGPAC 255 (330)
Q Consensus 244 ~cg~~g~~~~~~ 255 (330)
.||-.|++..+|
T Consensus 7 ~CG~~GH~ardC 18 (26)
T 1dsq_A 7 SCGKTGHIKRDC 18 (26)
T ss_dssp TTCCBSSCTTTT
T ss_pred eCCCCCcccccC
Confidence 577778887777
No 10
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=2.62 E-value=1.1e+03 Score=14.37 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCCCCcC
Q 020154 257 AVGMIDRKILGIQHLYR 273 (330)
Q Consensus 257 ~a~~IDr~vLG~~HlY~ 273 (330)
+-+-+.|.+||-+.-|.
T Consensus 15 afgaveravlggsrdyn 31 (32)
T 2keg_A 15 AFGAVERAVLGGSRDYN 31 (32)
T ss_dssp HHHHHHHHHTSSSCSCC
T ss_pred hhhHHHHHHhcCccccC
Confidence 45678999999766554
Done!