Query 020154
Match_columns 330
No_of_seqs 242 out of 926
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 12:36:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020154.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020154hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4pa1 a.217.1.1 (A:8-60) Arg 43.2 0.83 6E-05 30.5 -2.3 19 10-28 2-20 (53)
2 d1wmhb_ d.15.2.2 (B:) Partitio 9.5 25 0.0018 25.3 -0.4 7 6-12 57-63 (82)
3 d1v54l_ f.23.6.1 (L:) Mitochon 2.4 7.1E+02 0.052 15.3 3.3 10 313-322 34-43 (46)
4 d2gy9p1 d.27.1.1 (P:1-78) Ribo 2.3 2.5E+02 0.018 19.3 0.8 9 3-11 38-46 (78)
5 d1v54m_ f.23.7.1 (M:) Mitochon 2.3 5.1E+02 0.037 15.8 2.2 14 167-180 15-28 (43)
6 d1y5ic1 f.21.3.1 (C:1-225) Res 2.1 1.3E+03 0.095 17.4 5.9 22 161-182 7-28 (225)
7 d1t3ua_ d.244.1.1 (A:) ZapA ho 1.9 1.8E+02 0.013 19.7 -0.6 29 238-267 8-36 (92)
8 d1sg5a1 b.137.1.2 (A:1-86) Inh 1.8 3.2E+02 0.023 19.0 0.6 13 3-15 6-18 (86)
9 d1vaja1 d.309.1.1 (A:3-205) Hy 1.4 6.4E+02 0.046 19.8 2.0 23 3-27 90-112 (203)
10 d2fug31 b.52.2.2 (3:686-767) N 1.4 4E+02 0.029 17.9 0.6 8 322-329 75-82 (82)
No 1
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.22 E-value=0.83 Score=30.46 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.4
Q ss_pred cccccceeeeccCccCCCC
Q 020154 10 DANDQLVIQISKSTSAPAN 28 (330)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (330)
|..||||.||+.|++||..
T Consensus 2 ~tIeqlV~~ii~G~Lspke 20 (53)
T d1x4pa1 2 GTIDQLVKRVIEGSLSPKE 20 (53)
T ss_dssp HHHHHHHHHHHHTCSCHHH
T ss_pred chHHHHHHHHHcCCCCHHH
Confidence 4579999999999999864
No 2
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.53 E-value=25 Score=25.26 Aligned_cols=7 Identities=43% Similarity=0.952 Sum_probs=5.6
Q ss_pred CCCcccc
Q 020154 6 PINNDAN 12 (330)
Q Consensus 6 ~~~~~~~ 12 (330)
|||||.|
T Consensus 57 PINNDdN 63 (82)
T d1wmhb_ 57 PLTNDDS 63 (82)
T ss_dssp ECCSHHH
T ss_pred cccCchH
Confidence 8898865
No 3
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.43 E-value=7.1e+02 Score=15.27 Aligned_cols=10 Identities=30% Similarity=0.341 Sum_probs=6.7
Q ss_pred HHHHHHHhcc
Q 020154 313 HFFIAMQYQL 322 (330)
Q Consensus 313 ~~~~~~~~~~ 322 (330)
-+|++..+||
T Consensus 34 ~PF~ivRhqL 43 (46)
T d1v54l_ 34 APFFIVRHQL 43 (46)
T ss_dssp HHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 3667777775
No 4
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=2.35 E-value=2.5e+02 Score=19.26 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=6.1
Q ss_pred ccCCCCccc
Q 020154 3 KYNPINNDA 11 (330)
Q Consensus 3 ~~~~~~~~~ 11 (330)
-|||+.|+.
T Consensus 38 ~YnP~~~~~ 46 (78)
T d2gy9p1 38 FFNPIASEK 46 (78)
T ss_dssp EECSSCCSC
T ss_pred eECCcCCCC
Confidence 478887653
No 5
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.29 E-value=5.1e+02 Score=15.81 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 020154 167 QRIAIAYLVAALCE 180 (330)
Q Consensus 167 qrIgl~Yli~all~ 180 (330)
|.||++.++++++.
T Consensus 15 ~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 15 QAIGLSVTFLSFLL 28 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 78999888888764
No 6
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=2.05 E-value=1.3e+03 Score=17.40 Aligned_cols=22 Identities=14% Similarity=0.088 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 020154 161 RWMGVLQRIAIAYLVAALCEIW 182 (330)
Q Consensus 161 r~~GVLqrIgl~Yli~all~l~ 182 (330)
-++||+--|+++-++.+..+-+
T Consensus 7 ~lf~i~pyial~vf~~G~~~R~ 28 (225)
T d1y5ic1 7 FFFDIYPYIAGAVFLIGSWLRY 28 (225)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 4678888899999999887644
No 7
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=1.90 E-value=1.8e+02 Score=19.71 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=16.8
Q ss_pred CcccccccccCCCCCCCCcHHHHHHHHhcC
Q 020154 238 PWIFNVTCGVRGSTGPACNAVGMIDRKILG 267 (330)
Q Consensus 238 ~~~~~~~cg~~g~~~~~~N~a~~IDr~vLG 267 (330)
|+.|.+.|. .|.-..=..+|.++|..+=-
T Consensus 8 gr~Y~i~c~-~~eee~l~~aA~~ln~k~~~ 36 (92)
T d1t3ua_ 8 DKEYCINCP-DDERANLESAARYLDGKMRE 36 (92)
T ss_dssp TEEEEECCC-TTTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeCC-ccHHHHHHHHHHHHHHHHHH
Confidence 455666674 11100012799999999864
No 8
>d1sg5a1 b.137.1.2 (A:1-86) Inhibitor of Rho Rof {Escherichia coli [TaxId: 562]}
Probab=1.78 E-value=3.2e+02 Score=19.00 Aligned_cols=13 Identities=54% Similarity=0.887 Sum_probs=10.0
Q ss_pred ccCCCCccccccc
Q 020154 3 KYNPINNDANDQL 15 (330)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (330)
.|.|||=|.-|.|
T Consensus 6 ~Y~pI~C~~yDyL 18 (86)
T d1sg5a1 6 TYQPINCDDYDNL 18 (86)
T ss_dssp CCCSSCCSSHHHH
T ss_pred CccccccchhhHH
Confidence 4899998877754
No 9
>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=1.44 E-value=6.4e+02 Score=19.85 Aligned_cols=23 Identities=26% Similarity=0.631 Sum_probs=18.2
Q ss_pred ccCCCCccccccceeeeccCccCCC
Q 020154 3 KYNPINNDANDQLVIQISKSTSAPA 27 (330)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (330)
+++|+..+.+|++.|.|+- |++-
T Consensus 90 RF~Pl~~~El~~l~ieVsv--Ls~~ 112 (203)
T d1vaja1 90 RFPPVKLEEMDNLVVEVSV--LTPP 112 (203)
T ss_dssp TSCCCCGGGGGGEEEEEEE--ECCC
T ss_pred CCCCCCHHHHcCcEEEEEE--CCCC
Confidence 5789999999999998854 4443
No 10
>d2fug31 b.52.2.2 (3:686-767) NADH-quinone oxidoreductase chain 3, Nqo3, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=1.42 E-value=4e+02 Score=17.87 Aligned_cols=8 Identities=50% Similarity=0.563 Sum_probs=0.0
Q ss_pred ccccCCCC
Q 020154 322 LPRLWPNA 329 (330)
Q Consensus 322 ~~~~~~~~ 329 (330)
+|..||+|
T Consensus 75 ~P~~~P~a 82 (82)
T d2fug31 75 LSALGPAA 82 (82)
T ss_dssp EECCCCCC
T ss_pred EeccCCCC
Done!