BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020156
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGD 171
D P ++L+PG D V L++ +RV+V N RG G SP P F + D
Sbjct: 26 DGPAILLLPGWC---HDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKD 82
Query: 172 MQEVVAHVGSK--YPKAHLYAVGWSL 195
E++ +G + P +H + GW L
Sbjct: 83 ALEILDQLGVETFLPVSHSHG-GWVL 107
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 112 DSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGD 171
D P ++L+PG D V L++ +RV+V N RG G SP P F + D
Sbjct: 29 DGPAILLLPGWC---HDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKD 85
Query: 172 MQEVVAHVGSK--YPKAHLYAVGWSL 195
E++ +G + P +H + GW L
Sbjct: 86 ALEILDQLGVETFLPVSHSHG-GWVL 110
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 115 VLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQFYSASFLGDMQE 174
VLI L G S + R +L ++G+RV+ ++ RG G S + +F D+
Sbjct: 27 VLIHGYPLDGHSWERQTRELL----AQGYRVITYDRRGFGGSSKVNTGYDYDTFAADLHT 82
Query: 175 VVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHS 210
V+ + + + VG+S+G L RY+ H
Sbjct: 83 VLETLDLR----DVVLVGFSMGTGELARYVARYGHE 114
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 110 PPDSPVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ 162
P + P L ++ G GG ++YV L+ +G+RVV F+ RG G S + PQ
Sbjct: 22 PVEGPALFVLHGGPGG--NAYVLREGLQDYLEGFRVVYFDQRGSGRS-LELPQ 71
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 110 PPDS--PVLILMPGLTGGSEDSYV-RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ--FY 164
PPD P+++L+ G E Y RH + G+RVV + RG G S Q +
Sbjct: 28 PPDQQGPLVVLLHGF---PESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYR 84
Query: 165 SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223
+GD+ V+ G++ + VG GA + + C +G V + PF
Sbjct: 85 IKELVGDVVGVLDSYGAE----QAFVVGHDWGAPVAWTFAWLHPDRC--AGVVGISVPF 137
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 110 PPDS--PVLILMPGLTGGSEDSYV-RHMLLRARSKGWRVVVFNSRGCGDSPVTTPQ--FY 164
PPD P+++L+ G E Y RH + G+RVV + RG G S Q +
Sbjct: 22 PPDQQGPLVVLLHGF---PESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKAYR 78
Query: 165 SASFLGDMQEVVAHVGSKYPKAHLYAVGWSLGANILIRYLGHESHSCPLSGAVSLCNPF 223
+GD+ V+ G++ + VG GA + + C +G V + PF
Sbjct: 79 IKELVGDVVGVLDSYGAE----QAFVVGHDWGAPVAWTFAWLHPDRC--AGVVGISVPF 131
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 104 GDH----QLLPPDS------PVLILMPGLTGGSEDSYVRHMLLRARSKGWRVVVFNSRGC 153
GDH Q+ P++ P+++L G G +YV ++ A G V+ ++ GC
Sbjct: 36 GDHETWVQVTTPENAQPHALPLIVLHGG--PGMAHNYVANIAALADETGRTVIHYDQVGC 93
Query: 154 GDS---PVTTPQFYSAS-FLGDMQEVVAHVGSKYPKAHLYAVGWS--LGANILIR 202
G+S P F++ F+ + V +G + + H+ W LGA I +R
Sbjct: 94 GNSTHLPDAPADFWTPQLFVDEFHAVCTALGIE--RYHVLGQSWGGMLGAEIAVR 146
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 16 ITSVHVSTKAMPYNHPHPSLE----VTGGALHTFLPALKTLSRPYSPF 59
++ + + ++ +P HP+ + GGALH L+ L RP PF
Sbjct: 75 VSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPF 122
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 132 RHMLLRARSKGWRVVVFNSRGCGDS---PVTTPQFYSA-SFLGDMQEVVAHVGSKYPKAH 187
RH ++ +G+R V + RG GD+ P+ P +S +GD+ ++ + K
Sbjct: 48 RHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVF 107
Query: 188 LYAVGW 193
+ A W
Sbjct: 108 VVAHDW 113
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 132 RHMLLRARSKGWRVVVFNSRGCGDS---PVTTPQFYSA-SFLGDMQEVVAHVGSKYPKAH 187
RH ++ +G+R V + RG GD+ P+ P +S +GD+ ++ + K
Sbjct: 48 RHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVF 107
Query: 188 LYAVGW 193
+ A W
Sbjct: 108 VVAHDW 113
>pdb|2WAO|A Chain A, Structure Of A Family Two Carbohydrate Esterase From
Clostridium Thermocellum In Complex With Cellohexaose
Length = 341
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 144 RVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLY-AVG---WSLGANI 199
+VVV N G + +T F+ + +++ V YP AH++ VG W G ++
Sbjct: 215 QVVVIN---LGTNDFSTSFADKTKFVTAYKNLISEVRRNYPDAHIFCCVGPMLWGTGLDL 271
Query: 200 LIRYLGHESHSCPLSGAVSLCNPFNLVIADQDFRKGFNIVYDKALASALCRIFKKHALLF 259
Y+ + C SG + + + + QD G+ + ++A+ H L+
Sbjct: 272 CRSYVTEVVNDCNRSGDLKV---YFVEFPQQDGSTGYGEDWHPSIAT--------HQLMA 320
Query: 260 EDMGGEFNIPLA 271
E + E L
Sbjct: 321 ERLTAEIKNKLG 332
>pdb|2WAB|A Chain A, Structure Of An Active Site Mutant Of A Family Two
Carbohydrate Esterase From Clostridium Thermocellum In
Complex With Celluohexase
Length = 341
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 144 RVVVFNSRGCGDSPVTTPQFYSASFLGDMQEVVAHVGSKYPKAHLY-AVG---WSLGANI 199
+VVV N G + +T F+ + +++ V YP AH++ VG W G ++
Sbjct: 215 QVVVIN---LGTNDFSTSFADKTKFVTAYKNLISEVRRNYPDAHIFCCVGPMLWGTGLDL 271
Query: 200 LIRYLGHESHSCPLSGAVSLCNPFNLVIADQDFRKGFNIVYDKALASALCRIFKKHALLF 259
Y+ + C SG + + + + QD G+ + ++A+ H L+
Sbjct: 272 CRSYVTEVVNDCNRSGDLKV---YFVEFPQQDGSTGYGEDWHPSIAT--------HQLMA 320
Query: 260 EDMGGEFNIPLA 271
E + E L
Sbjct: 321 ERLTAEIKNKLG 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,059,335
Number of Sequences: 62578
Number of extensions: 407756
Number of successful extensions: 1021
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 26
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)