Query 020158
Match_columns 330
No_of_seqs 384 out of 2046
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 8.4E-30 1.8E-34 222.2 11.5 153 80-259 5-162 (173)
2 KOG3201 Uncharacterized conser 99.8 1.6E-19 3.5E-24 151.8 5.0 140 91-258 2-145 (201)
3 KOG2793 Putative N2,N2-dimethy 99.7 1.2E-17 2.6E-22 151.8 12.0 144 92-258 50-204 (248)
4 COG3897 Predicted methyltransf 99.7 5.9E-18 1.3E-22 146.7 7.8 136 92-264 54-190 (218)
5 COG2227 UbiG 2-polyprenyl-3-me 99.4 3.4E-13 7.3E-18 121.3 9.2 131 119-281 58-197 (243)
6 PF05175 MTS: Methyltransferas 99.4 2.8E-12 6.1E-17 111.3 14.7 115 100-252 18-139 (170)
7 PF12847 Methyltransf_18: Meth 99.4 4.6E-12 9.9E-17 101.4 12.2 104 120-252 1-110 (112)
8 TIGR00537 hemK_rel_arch HemK-r 99.4 2.3E-11 5E-16 106.2 15.3 106 102-245 8-134 (179)
9 PLN02396 hexaprenyldihydroxybe 99.3 1.2E-11 2.6E-16 117.9 12.8 111 118-257 129-239 (322)
10 KOG1270 Methyltransferases [Co 99.3 3.8E-12 8.2E-17 115.5 8.4 134 118-279 87-229 (282)
11 PRK11207 tellurite resistance 99.3 3.6E-11 7.8E-16 106.9 14.4 100 118-246 28-129 (197)
12 COG4123 Predicted O-methyltran 99.3 1.5E-11 3.2E-16 112.2 12.0 120 94-245 25-164 (248)
13 PF13847 Methyltransf_31: Meth 99.3 6.5E-11 1.4E-15 100.5 14.0 106 120-254 3-111 (152)
14 PRK11036 putative S-adenosyl-L 99.3 3.3E-11 7.2E-16 111.2 10.8 101 119-245 43-143 (255)
15 PRK14968 putative methyltransf 99.2 2E-10 4.3E-15 100.2 14.8 116 97-246 7-143 (188)
16 TIGR00477 tehB tellurite resis 99.2 1.6E-10 3.4E-15 102.6 13.5 98 119-246 29-128 (195)
17 PF06325 PrmA: Ribosomal prote 99.2 1.1E-10 2.4E-15 109.7 13.1 129 79-253 130-259 (295)
18 PLN02244 tocopherol O-methyltr 99.2 5E-10 1.1E-14 107.7 15.6 100 119-245 117-217 (340)
19 PF08241 Methyltransf_11: Meth 99.2 1.5E-10 3.3E-15 89.0 9.7 90 125-245 1-91 (95)
20 PLN02585 magnesium protoporphy 99.2 5.3E-10 1.2E-14 106.3 15.3 97 118-240 142-240 (315)
21 PRK00107 gidB 16S rRNA methylt 99.2 6.1E-10 1.3E-14 98.3 13.8 92 121-245 46-139 (187)
22 TIGR00138 gidB 16S rRNA methyl 99.2 5E-10 1.1E-14 98.3 13.0 94 119-245 41-136 (181)
23 COG2264 PrmA Ribosomal protein 99.2 6.7E-10 1.5E-14 103.9 14.4 132 79-253 131-263 (300)
24 TIGR00452 methyltransferase, p 99.2 4.3E-10 9.4E-15 106.8 13.1 117 98-246 103-220 (314)
25 COG4976 Predicted methyltransf 99.2 1.6E-11 3.5E-16 109.2 3.0 152 121-323 126-281 (287)
26 PRK12335 tellurite resistance 99.1 4.6E-10 1E-14 105.5 13.0 98 119-246 119-218 (287)
27 PRK15068 tRNA mo(5)U34 methylt 99.1 6.5E-10 1.4E-14 106.2 13.9 117 98-246 104-221 (322)
28 PRK14967 putative methyltransf 99.1 1.2E-09 2.7E-14 98.8 14.5 112 101-246 21-154 (223)
29 PRK15001 SAM-dependent 23S rib 99.1 1E-09 2.2E-14 106.7 14.5 104 121-252 229-339 (378)
30 PF13489 Methyltransf_23: Meth 99.1 4.3E-10 9.3E-15 95.2 10.5 100 118-257 20-119 (161)
31 PF05401 NodS: Nodulation prot 99.1 3.5E-10 7.6E-15 99.3 9.9 99 122-253 45-146 (201)
32 KOG2920 Predicted methyltransf 99.1 3.7E-11 8E-16 110.6 3.6 164 88-276 84-250 (282)
33 PRK08287 cobalt-precorrin-6Y C 99.1 8.7E-09 1.9E-13 90.6 18.5 98 119-251 30-129 (187)
34 TIGR00406 prmA ribosomal prote 99.1 2.5E-09 5.4E-14 100.6 15.7 117 98-253 142-259 (288)
35 PRK00517 prmA ribosomal protei 99.1 2.3E-09 5E-14 98.7 15.0 124 79-252 88-212 (250)
36 PF08242 Methyltransf_12: Meth 99.1 4.1E-11 9E-16 94.1 1.9 95 125-245 1-97 (99)
37 PF01209 Ubie_methyltran: ubiE 99.1 1.8E-09 4E-14 98.5 12.9 122 96-255 32-156 (233)
38 COG2230 Cfa Cyclopropane fatty 99.1 2.7E-09 5.9E-14 99.1 14.1 114 101-247 56-172 (283)
39 PRK10258 biotin biosynthesis p 99.1 2.4E-09 5.2E-14 98.4 13.7 98 120-252 42-139 (251)
40 PRK01683 trans-aconitate 2-met 99.1 2.2E-09 4.9E-14 98.9 13.5 98 119-252 30-129 (258)
41 COG2813 RsmC 16S RNA G1207 met 99.1 2.6E-09 5.7E-14 99.5 13.6 109 107-248 148-263 (300)
42 PRK05134 bifunctional 3-demeth 99.1 3E-09 6.5E-14 96.5 13.6 116 106-254 37-152 (233)
43 PLN02336 phosphoethanolamine N 99.1 3E-09 6.5E-14 106.6 14.8 104 119-253 265-369 (475)
44 PF13659 Methyltransf_26: Meth 99.1 6.1E-10 1.3E-14 89.8 8.0 100 121-245 1-109 (117)
45 PTZ00098 phosphoethanolamine N 99.1 3E-09 6.4E-14 98.8 13.6 113 101-246 36-151 (263)
46 TIGR02021 BchM-ChlM magnesium 99.0 2.4E-09 5.1E-14 96.4 12.5 95 118-242 53-149 (219)
47 PRK09489 rsmC 16S ribosomal RN 99.0 2E-09 4.3E-14 103.6 12.6 95 121-246 197-298 (342)
48 TIGR02752 MenG_heptapren 2-hep 99.0 3.6E-09 7.7E-14 95.8 13.5 99 119-245 44-145 (231)
49 TIGR02469 CbiT precorrin-6Y C5 99.0 1.1E-08 2.3E-13 82.8 14.9 97 119-245 18-116 (124)
50 PRK11873 arsM arsenite S-adeno 99.0 3.8E-09 8.2E-14 98.2 13.5 99 119-245 76-177 (272)
51 PLN02233 ubiquinone biosynthes 99.0 4.4E-09 9.5E-14 97.6 13.7 103 119-246 72-177 (261)
52 COG2890 HemK Methylase of poly 99.0 4.1E-09 8.8E-14 98.8 13.6 58 123-185 113-172 (280)
53 PF02353 CMAS: Mycolic acid cy 99.0 4.6E-09 1E-13 98.0 13.7 113 101-246 46-161 (273)
54 smart00828 PKS_MT Methyltransf 99.0 4E-09 8.6E-14 95.0 12.0 96 122-245 1-98 (224)
55 PRK14103 trans-aconitate 2-met 99.0 4.7E-09 1E-13 96.8 12.5 92 118-245 27-120 (255)
56 PF13649 Methyltransf_25: Meth 99.0 1.8E-09 4E-14 85.2 8.1 92 124-244 1-100 (101)
57 PRK08317 hypothetical protein; 99.0 1.4E-08 3E-13 91.4 14.9 111 103-245 5-118 (241)
58 TIGR03587 Pse_Me-ase pseudamin 99.0 9.4E-09 2E-13 92.0 13.6 93 119-246 42-136 (204)
59 COG2263 Predicted RNA methylas 99.0 4E-09 8.7E-14 91.8 10.7 64 116-185 41-105 (198)
60 TIGR00080 pimt protein-L-isoas 99.0 9.6E-09 2.1E-13 92.4 13.7 112 101-251 61-175 (215)
61 PRK07580 Mg-protoporphyrin IX 99.0 8.4E-09 1.8E-13 93.1 13.3 94 118-241 61-156 (230)
62 PRK00216 ubiE ubiquinone/menaq 99.0 1.5E-08 3.3E-13 91.4 14.6 99 120-245 51-152 (239)
63 PRK10909 rsmD 16S rRNA m(2)G96 99.0 5.6E-09 1.2E-13 93.0 11.4 110 119-258 52-164 (199)
64 PRK15451 tRNA cmo(5)U34 methyl 99.0 9.4E-09 2E-13 94.5 13.3 103 120-253 56-164 (247)
65 PF03848 TehB: Tellurite resis 99.0 9.1E-09 2E-13 90.9 12.6 99 117-245 27-127 (192)
66 PLN02490 MPBQ/MSBQ methyltrans 99.0 2.1E-08 4.6E-13 96.2 15.5 96 120-246 113-210 (340)
67 TIGR02072 BioC biotin biosynth 98.9 1.3E-08 2.9E-13 91.6 12.9 100 119-252 33-134 (240)
68 PRK13944 protein-L-isoaspartat 98.9 3.3E-08 7.1E-13 88.4 14.9 112 103-252 58-172 (205)
69 TIGR01983 UbiG ubiquinone bios 98.9 1.8E-08 3.9E-13 90.6 13.3 125 100-253 24-149 (224)
70 TIGR00740 methyltransferase, p 98.9 1.7E-08 3.7E-13 92.1 13.3 107 119-256 52-164 (239)
71 TIGR03533 L3_gln_methyl protei 98.9 1.1E-08 2.4E-13 96.1 12.0 102 120-251 121-249 (284)
72 PRK13942 protein-L-isoaspartat 98.9 2.5E-08 5.5E-13 89.6 13.9 109 101-246 60-171 (212)
73 PRK00377 cbiT cobalt-precorrin 98.9 2E-08 4.4E-13 89.2 12.9 100 117-245 37-139 (198)
74 PRK00312 pcm protein-L-isoaspa 98.9 4E-08 8.6E-13 88.1 14.7 113 101-252 62-174 (212)
75 PRK00121 trmB tRNA (guanine-N( 98.9 1.1E-08 2.5E-13 91.2 10.1 106 120-253 40-156 (202)
76 PRK13168 rumA 23S rRNA m(5)U19 98.9 2.7E-08 5.9E-13 99.0 13.8 125 97-254 276-401 (443)
77 PRK11805 N5-glutamine S-adenos 98.9 1.9E-08 4E-13 95.6 11.7 96 122-245 135-257 (307)
78 COG2226 UbiE Methylase involve 98.9 2.8E-08 6.1E-13 90.6 12.2 113 96-245 36-150 (238)
79 TIGR00536 hemK_fam HemK family 98.9 5.1E-08 1.1E-12 91.5 14.0 100 122-251 116-242 (284)
80 PRK05785 hypothetical protein; 98.9 2E-08 4.3E-13 91.3 10.9 87 121-243 52-139 (226)
81 PRK14966 unknown domain/N5-glu 98.9 5.1E-08 1.1E-12 95.4 14.4 74 101-185 237-312 (423)
82 TIGR03534 RF_mod_PrmC protein- 98.9 7.4E-08 1.6E-12 87.9 14.7 119 98-251 69-215 (251)
83 TIGR03704 PrmC_rel_meth putati 98.8 6E-08 1.3E-12 89.5 14.0 119 101-252 69-215 (251)
84 KOG1499 Protein arginine N-met 98.8 1.9E-08 4E-13 95.2 10.7 102 116-245 56-161 (346)
85 TIGR00095 RNA methyltransferas 98.8 6.4E-08 1.4E-12 85.6 13.5 113 118-256 47-162 (189)
86 PF08003 Methyltransf_9: Prote 98.8 4.9E-08 1.1E-12 91.2 12.8 116 99-246 98-214 (315)
87 PRK11705 cyclopropane fatty ac 98.8 5.4E-08 1.2E-12 95.1 13.7 95 117-245 164-261 (383)
88 PRK15128 23S rRNA m(5)C1962 me 98.8 5.3E-08 1.2E-12 95.5 13.4 109 119-251 219-337 (396)
89 PRK04266 fibrillarin; Provisio 98.8 2.6E-07 5.6E-12 84.0 16.6 128 93-256 44-179 (226)
90 PRK04148 hypothetical protein; 98.8 2.3E-08 5E-13 83.1 8.8 97 104-243 3-100 (134)
91 PRK11783 rlmL 23S rRNA m(2)G24 98.8 6E-08 1.3E-12 101.7 13.2 107 119-252 537-655 (702)
92 PRK09328 N5-glutamine S-adenos 98.8 1.6E-07 3.4E-12 87.2 14.3 78 100-185 91-170 (275)
93 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 2.3E-07 5.1E-12 82.8 14.9 97 119-245 38-137 (223)
94 TIGR02716 C20_methyl_CrtF C-20 98.8 1.4E-07 3E-12 89.4 14.0 98 119-246 148-249 (306)
95 PRK07402 precorrin-6B methylas 98.7 1.7E-07 3.8E-12 82.9 13.2 96 119-245 39-136 (196)
96 PRK03522 rumB 23S rRNA methylu 98.7 9.9E-08 2.1E-12 90.9 12.4 105 119-255 172-276 (315)
97 KOG2497 Predicted methyltransf 98.7 2.1E-09 4.6E-14 99.0 0.8 170 85-278 58-231 (262)
98 TIGR03840 TMPT_Se_Te thiopurin 98.7 1.8E-07 3.9E-12 84.3 13.1 127 101-254 19-154 (213)
99 PRK06202 hypothetical protein; 98.7 8E-08 1.7E-12 87.3 11.0 93 119-242 59-159 (232)
100 cd02440 AdoMet_MTases S-adenos 98.7 1.4E-07 3E-12 72.1 10.7 101 123-252 1-103 (107)
101 PRK13255 thiopurine S-methyltr 98.7 6.4E-07 1.4E-11 81.0 16.4 116 102-246 23-150 (218)
102 PLN03075 nicotianamine synthas 98.7 1.4E-07 3.1E-12 88.5 12.4 104 120-251 123-231 (296)
103 PLN02336 phosphoethanolamine N 98.7 5.7E-07 1.2E-11 90.2 17.0 99 119-245 36-136 (475)
104 TIGR01177 conserved hypothetic 98.7 2.8E-07 6.2E-12 88.2 13.0 114 104-249 169-292 (329)
105 smart00138 MeTrc Methyltransfe 98.7 1E-07 2.3E-12 88.6 9.7 108 120-252 99-241 (264)
106 TIGR02085 meth_trns_rumB 23S r 98.7 2.2E-07 4.8E-12 90.6 12.3 104 119-254 232-335 (374)
107 TIGR00091 tRNA (guanine-N(7)-) 98.7 2E-07 4.3E-12 82.6 11.0 108 120-254 16-133 (194)
108 TIGR00478 tly hemolysin TlyA f 98.7 8.2E-08 1.8E-12 87.2 8.6 115 97-251 55-171 (228)
109 PRK01544 bifunctional N5-gluta 98.7 2.3E-07 4.9E-12 93.9 12.5 61 120-184 138-200 (506)
110 PRK06922 hypothetical protein; 98.6 2.2E-07 4.8E-12 95.0 12.0 102 118-246 416-532 (677)
111 PHA03411 putative methyltransf 98.6 3.1E-07 6.8E-12 85.2 11.9 100 121-256 65-186 (279)
112 PRK13943 protein-L-isoaspartat 98.6 6.2E-07 1.4E-11 85.6 14.1 95 118-246 78-175 (322)
113 smart00650 rADc Ribosomal RNA 98.6 6E-07 1.3E-11 77.6 12.6 61 118-185 11-71 (169)
114 PLN02781 Probable caffeoyl-CoA 98.6 3.2E-07 6.9E-12 83.8 11.4 105 119-251 67-176 (234)
115 COG2518 Pcm Protein-L-isoaspar 98.6 9.8E-07 2.1E-11 78.6 13.9 116 99-251 54-169 (209)
116 TIGR00479 rumA 23S rRNA (uraci 98.6 1.8E-07 4E-12 92.8 9.9 106 119-253 291-396 (431)
117 PTZ00146 fibrillarin; Provisio 98.6 5.1E-06 1.1E-10 77.9 18.1 132 94-257 105-241 (293)
118 PLN02672 methionine S-methyltr 98.6 3.9E-07 8.5E-12 98.4 11.8 84 100-185 100-196 (1082)
119 TIGR02143 trmA_only tRNA (urac 98.6 6.4E-07 1.4E-11 86.7 12.2 114 121-255 198-313 (353)
120 KOG3010 Methyltransferase [Gen 98.6 9.8E-08 2.1E-12 86.0 6.0 105 122-254 35-139 (261)
121 PRK11727 23S rRNA mA1618 methy 98.5 3.8E-07 8.2E-12 86.9 9.4 87 120-229 114-204 (321)
122 PRK05031 tRNA (uracil-5-)-meth 98.5 9.6E-07 2.1E-11 85.8 12.3 131 102-255 192-322 (362)
123 PRK14904 16S rRNA methyltransf 98.5 1.4E-06 2.9E-11 87.0 13.1 78 96-184 232-312 (445)
124 TIGR02081 metW methionine bios 98.5 7.1E-07 1.5E-11 78.9 9.7 89 120-241 13-102 (194)
125 COG2242 CobL Precorrin-6B meth 98.5 3.4E-06 7.4E-11 73.7 13.4 98 117-246 31-130 (187)
126 KOG2904 Predicted methyltransf 98.5 8.7E-07 1.9E-11 81.3 10.1 84 94-182 123-208 (328)
127 PF07021 MetW: Methionine bios 98.5 5.7E-07 1.2E-11 79.0 8.6 88 120-240 13-101 (193)
128 KOG3191 Predicted N6-DNA-methy 98.5 5.1E-06 1.1E-10 72.0 13.7 67 101-167 24-93 (209)
129 PRK14902 16S rRNA methyltransf 98.5 3.8E-06 8.2E-11 83.8 15.0 61 119-184 249-312 (444)
130 PRK10901 16S rRNA methyltransf 98.5 2.8E-06 6E-11 84.3 13.9 59 119-183 243-303 (427)
131 PRK04457 spermidine synthase; 98.5 7.9E-07 1.7E-11 82.6 9.3 102 120-251 66-175 (262)
132 KOG4300 Predicted methyltransf 98.5 1.2E-06 2.6E-11 77.4 9.7 96 123-245 79-176 (252)
133 PHA03412 putative methyltransf 98.4 1.6E-06 3.5E-11 78.8 10.8 91 120-244 49-156 (241)
134 TIGR03438 probable methyltrans 98.4 2.4E-06 5.1E-11 81.0 12.0 113 120-256 63-180 (301)
135 PRK04338 N(2),N(2)-dimethylgua 98.4 2E-06 4.2E-11 84.1 10.8 98 121-252 58-157 (382)
136 PRK11088 rrmA 23S rRNA methylt 98.4 3.8E-06 8.3E-11 78.3 12.4 86 120-245 85-175 (272)
137 TIGR00563 rsmB ribosomal RNA s 98.4 6.4E-06 1.4E-10 81.7 14.5 61 100-167 225-287 (426)
138 PRK14896 ksgA 16S ribosomal RN 98.4 2.3E-06 5E-11 79.3 10.6 72 103-184 15-86 (258)
139 PRK14121 tRNA (guanine-N(7)-)- 98.4 5.7E-06 1.2E-10 80.6 13.6 107 119-253 121-235 (390)
140 TIGR00446 nop2p NOL1/NOP2/sun 98.4 7.1E-06 1.5E-10 76.3 13.7 60 119-183 70-132 (264)
141 PRK14901 16S rRNA methyltransf 98.4 3.7E-06 8E-11 83.6 12.5 108 119-251 251-383 (434)
142 PF01135 PCMT: Protein-L-isoas 98.4 3.7E-06 8.1E-11 75.5 11.0 113 101-252 56-171 (209)
143 KOG1271 Methyltransferases [Ge 98.4 3.6E-06 7.8E-11 73.0 10.2 136 97-264 40-189 (227)
144 KOG1500 Protein arginine N-met 98.4 2.3E-06 5.1E-11 80.4 9.7 100 116-245 173-276 (517)
145 COG4106 Tam Trans-aconitate me 98.4 1.5E-06 3.2E-11 77.4 7.9 93 118-244 28-122 (257)
146 PRK11188 rrmJ 23S rRNA methylt 98.3 7.8E-06 1.7E-10 73.4 12.4 97 118-245 49-159 (209)
147 PRK14903 16S rRNA methyltransf 98.3 9.9E-06 2.1E-10 80.5 14.2 61 119-184 236-299 (431)
148 COG4122 Predicted O-methyltran 98.3 4.3E-06 9.3E-11 75.3 10.6 103 119-251 58-164 (219)
149 PTZ00338 dimethyladenosine tra 98.3 3.3E-06 7.1E-11 79.7 10.1 74 104-184 23-96 (294)
150 PLN02476 O-methyltransferase 98.3 5.4E-06 1.2E-10 77.4 11.2 103 118-244 116-221 (278)
151 PF05219 DREV: DREV methyltran 98.3 1.3E-05 2.7E-10 73.6 13.3 102 118-256 92-193 (265)
152 PRK00274 ksgA 16S ribosomal RN 98.3 8.2E-06 1.8E-10 76.2 12.1 70 105-185 30-99 (272)
153 PF01596 Methyltransf_3: O-met 98.3 2.7E-06 5.9E-11 76.2 8.0 105 119-251 44-153 (205)
154 PF03602 Cons_hypoth95: Conser 98.2 1.5E-06 3.3E-11 76.5 5.6 112 119-256 41-156 (183)
155 PF06080 DUF938: Protein of un 98.2 7.6E-06 1.6E-10 72.8 9.7 139 123-287 28-170 (204)
156 KOG1540 Ubiquinone biosynthesi 98.2 2.6E-05 5.5E-10 71.2 13.0 120 93-246 82-209 (296)
157 PF02475 Met_10: Met-10+ like- 98.2 5.2E-06 1.1E-10 74.0 8.4 94 119-244 100-195 (200)
158 KOG1541 Predicted protein carb 98.2 1.2E-05 2.6E-10 71.8 10.4 98 120-249 50-158 (270)
159 COG1092 Predicted SAM-dependen 98.2 2.6E-05 5.7E-10 76.1 13.5 112 118-253 215-336 (393)
160 PF05185 PRMT5: PRMT5 arginine 98.2 1.4E-05 3.1E-10 79.6 11.6 122 92-244 159-290 (448)
161 PRK00811 spermidine synthase; 98.2 1.1E-05 2.4E-10 75.8 10.2 101 120-244 76-184 (283)
162 KOG3420 Predicted RNA methylas 98.2 3.9E-06 8.5E-11 70.2 6.3 63 117-185 45-108 (185)
163 TIGR00438 rrmJ cell division p 98.2 1.6E-05 3.5E-10 69.9 10.7 98 117-245 29-140 (188)
164 TIGR00755 ksgA dimethyladenosi 98.2 2.2E-05 4.7E-10 72.4 11.9 71 105-185 17-87 (253)
165 TIGR00417 speE spermidine synt 98.2 1.4E-05 3.1E-10 74.4 10.4 106 120-251 72-184 (270)
166 PF00891 Methyltransf_2: O-met 98.1 4.2E-05 9E-10 69.8 12.7 98 120-255 100-201 (241)
167 TIGR00308 TRM1 tRNA(guanine-26 98.1 1E-05 2.3E-10 78.7 9.0 99 121-252 45-146 (374)
168 COG2265 TrmA SAM-dependent met 98.1 1.8E-05 3.9E-10 78.5 10.0 119 102-253 278-396 (432)
169 COG2519 GCD14 tRNA(1-methylade 98.1 7.4E-05 1.6E-09 68.3 13.0 102 117-251 91-195 (256)
170 PLN02589 caffeoyl-CoA O-methyl 98.1 3.4E-05 7.3E-10 71.0 10.5 108 119-251 78-188 (247)
171 PRK13256 thiopurine S-methyltr 98.0 9.1E-05 2E-09 67.3 12.3 127 102-253 29-164 (226)
172 PRK01581 speE spermidine synth 98.0 3E-05 6.5E-10 74.8 9.5 101 119-244 149-261 (374)
173 PRK03612 spermidine synthase; 98.0 2.8E-05 6.1E-10 79.1 9.3 106 120-251 297-413 (521)
174 PLN02366 spermidine synthase 97.9 7.7E-05 1.7E-09 70.9 10.4 102 120-244 91-199 (308)
175 PF05724 TPMT: Thiopurine S-me 97.9 4.3E-05 9.4E-10 69.1 7.9 126 102-254 23-157 (218)
176 PF10672 Methyltrans_SAM: S-ad 97.9 0.0001 2.3E-09 69.1 10.5 109 119-252 122-237 (286)
177 COG4076 Predicted RNA methylas 97.8 3.5E-05 7.6E-10 67.2 5.7 57 122-183 34-90 (252)
178 KOG2187 tRNA uracil-5-methyltr 97.8 0.00016 3.5E-09 71.8 10.0 127 101-256 367-493 (534)
179 KOG2899 Predicted methyltransf 97.7 0.00023 4.9E-09 64.6 9.8 134 116-251 54-207 (288)
180 PF05971 Methyltransf_10: Prot 97.7 0.00034 7.3E-09 65.9 11.5 88 121-229 103-192 (299)
181 PF08704 GCD14: tRNA methyltra 97.7 0.00056 1.2E-08 63.0 11.9 64 117-184 37-103 (247)
182 COG0742 N6-adenine-specific me 97.7 0.00047 1E-08 60.6 10.5 112 118-256 41-157 (187)
183 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.00015 3.2E-09 70.3 8.1 71 102-181 182-252 (352)
184 KOG2361 Predicted methyltransf 97.7 0.0001 2.2E-09 66.8 6.4 109 123-258 74-188 (264)
185 PF09445 Methyltransf_15: RNA 97.6 7.4E-05 1.6E-09 64.4 5.0 60 122-185 1-60 (163)
186 TIGR01444 fkbM_fam methyltrans 97.6 0.0002 4.2E-09 59.6 7.3 58 123-185 1-60 (143)
187 COG3963 Phospholipid N-methylt 97.6 0.0007 1.5E-08 58.2 10.0 126 94-252 26-156 (194)
188 COG2520 Predicted methyltransf 97.6 0.0003 6.4E-09 67.5 8.5 95 119-244 187-282 (341)
189 PLN02823 spermine synthase 97.5 0.00053 1.2E-08 65.9 10.0 105 120-251 103-218 (336)
190 PF01861 DUF43: Protein of unk 97.4 0.0038 8.1E-08 56.9 13.3 130 94-257 22-153 (243)
191 PF09243 Rsm22: Mitochondrial 97.3 0.0013 2.9E-08 61.5 9.8 107 117-252 30-139 (274)
192 PF00398 RrnaAD: Ribosomal RNA 97.3 0.0039 8.4E-08 57.8 12.0 74 102-185 15-88 (262)
193 PF02527 GidB: rRNA small subu 97.3 0.0018 3.8E-08 57.1 9.1 89 123-244 51-141 (184)
194 PF01739 CheR: CheR methyltran 97.3 0.00065 1.4E-08 60.5 6.4 109 120-253 31-175 (196)
195 KOG0820 Ribosomal RNA adenine 97.3 0.0021 4.5E-08 59.4 9.7 65 117-185 55-119 (315)
196 PRK00536 speE spermidine synth 97.2 0.0022 4.8E-08 59.5 9.9 93 120-244 72-164 (262)
197 PF01170 UPF0020: Putative RNA 97.2 0.0022 4.7E-08 56.2 9.1 99 118-243 26-143 (179)
198 COG0030 KsgA Dimethyladenosine 97.2 0.0025 5.5E-08 58.9 9.6 70 106-185 19-88 (259)
199 PRK11783 rlmL 23S rRNA m(2)G24 97.1 0.0054 1.2E-07 64.7 12.8 75 104-185 176-295 (702)
200 COG0357 GidB Predicted S-adeno 97.1 0.0027 5.9E-08 57.2 8.9 98 121-251 68-168 (215)
201 PRK10611 chemotaxis methyltran 97.1 0.0015 3.3E-08 61.5 7.4 109 121-253 116-262 (287)
202 COG1352 CheR Methylase of chem 97.0 0.0054 1.2E-07 57.1 10.2 124 104-253 80-241 (268)
203 PF02390 Methyltransf_4: Putat 97.0 0.0094 2E-07 52.9 11.0 104 123-253 20-133 (195)
204 PF05891 Methyltransf_PK: AdoM 96.9 0.009 2E-07 53.7 10.5 130 120-279 55-190 (218)
205 PF03291 Pox_MCEL: mRNA cappin 96.9 0.0065 1.4E-07 58.4 10.2 133 98-252 43-185 (331)
206 PF08123 DOT1: Histone methyla 96.9 0.0052 1.1E-07 55.1 9.0 100 118-238 40-146 (205)
207 PF04816 DUF633: Family of unk 96.9 0.034 7.5E-07 49.8 14.2 54 124-181 1-56 (205)
208 PRK11760 putative 23S rRNA C24 96.9 0.016 3.4E-07 55.6 12.4 109 98-245 185-297 (357)
209 KOG2940 Predicted methyltransf 96.9 0.0011 2.4E-08 59.7 4.3 154 121-309 73-238 (325)
210 KOG3987 Uncharacterized conser 96.8 0.00042 9.2E-09 61.5 1.1 95 120-252 112-206 (288)
211 PF13679 Methyltransf_32: Meth 96.8 0.0043 9.3E-08 52.0 7.2 48 119-166 24-77 (141)
212 PRK11933 yebU rRNA (cytosine-C 96.8 0.011 2.4E-07 59.4 11.1 58 119-181 112-172 (470)
213 PHA01634 hypothetical protein 96.8 0.0031 6.8E-08 51.8 5.6 51 117-167 25-76 (156)
214 KOG1501 Arginine N-methyltrans 96.7 0.0033 7.3E-08 61.5 6.6 98 123-246 69-170 (636)
215 PF02384 N6_Mtase: N-6 DNA Met 96.7 0.011 2.3E-07 56.0 9.8 60 104-166 33-101 (311)
216 KOG1661 Protein-L-isoaspartate 96.6 0.015 3.3E-07 51.9 9.2 71 95-166 58-132 (237)
217 TIGR02987 met_A_Alw26 type II 96.6 0.01 2.2E-07 60.5 9.1 47 120-166 31-87 (524)
218 COG2521 Predicted archaeal met 96.6 0.0031 6.8E-08 57.1 4.7 135 92-257 113-252 (287)
219 PF01269 Fibrillarin: Fibrilla 96.6 0.23 5E-06 44.9 16.5 171 93-316 45-220 (229)
220 PLN02232 ubiquinone biosynthes 96.6 0.014 3E-07 50.0 8.6 76 146-246 1-76 (160)
221 PF01564 Spermine_synth: Sperm 96.4 0.014 3.1E-07 53.7 7.9 106 120-251 76-189 (246)
222 COG1189 Predicted rRNA methyla 96.3 0.041 9E-07 50.1 10.4 119 95-251 57-178 (245)
223 COG0500 SmtA SAM-dependent met 96.1 0.18 3.9E-06 39.7 12.4 102 124-255 52-157 (257)
224 COG1041 Predicted DNA modifica 96.1 0.052 1.1E-06 52.1 10.2 60 104-166 184-243 (347)
225 KOG1709 Guanidinoacetate methy 96.0 0.033 7.2E-07 50.0 8.0 98 119-244 100-199 (271)
226 PRK00050 16S rRNA m(4)C1402 me 96.0 0.029 6.3E-07 53.1 8.1 46 119-164 18-66 (296)
227 KOG1663 O-methyltransferase [S 95.7 0.099 2.1E-06 47.4 9.9 102 117-244 70-176 (237)
228 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.7 0.014 3E-07 54.1 4.4 47 116-162 52-99 (256)
229 COG0421 SpeE Spermidine syntha 95.4 0.12 2.6E-06 48.6 9.9 98 122-244 78-183 (282)
230 COG0220 Predicted S-adenosylme 95.3 0.14 3.1E-06 46.5 9.8 107 122-258 50-169 (227)
231 COG1568 Predicted methyltransf 95.3 0.081 1.8E-06 49.2 8.0 110 117-254 149-261 (354)
232 COG0116 Predicted N6-adenine-s 95.2 0.31 6.7E-06 47.5 12.2 107 117-252 188-344 (381)
233 PF03059 NAS: Nicotianamine sy 94.9 0.47 1E-05 44.4 12.1 97 121-244 121-223 (276)
234 KOG2078 tRNA modification enzy 94.7 0.042 9.1E-07 53.8 4.6 86 91-184 224-310 (495)
235 PF07942 N2227: N2227-like pro 94.4 0.42 9.1E-06 44.6 10.5 46 119-166 55-100 (270)
236 COG0144 Sun tRNA and rRNA cyto 94.4 0.65 1.4E-05 45.1 12.3 60 117-181 153-216 (355)
237 PRK01544 bifunctional N5-gluta 94.3 0.28 6E-06 50.0 9.9 107 120-254 347-463 (506)
238 PRK10742 putative methyltransf 94.3 0.12 2.6E-06 47.6 6.5 46 119-164 85-132 (250)
239 KOG3045 Predicted RNA methylas 94.3 0.41 8.8E-06 44.3 9.7 113 120-303 180-292 (325)
240 COG2384 Predicted SAM-dependen 94.2 0.22 4.8E-06 44.9 7.8 60 120-183 16-77 (226)
241 PF12147 Methyltransf_20: Puta 94.1 0.98 2.1E-05 42.5 12.1 107 120-251 135-248 (311)
242 PF05148 Methyltransf_8: Hypot 93.9 1 2.3E-05 40.4 11.5 131 98-303 54-186 (219)
243 COG1255 Uncharacterized protei 93.9 0.36 7.9E-06 39.1 7.6 90 105-244 4-94 (129)
244 COG1889 NOP1 Fibrillarin-like 93.8 2.9 6.4E-05 37.4 13.9 166 95-319 50-225 (231)
245 TIGR03439 methyl_EasF probable 93.8 0.91 2E-05 43.5 11.6 111 120-254 76-198 (319)
246 PF02005 TRM: N2,N2-dimethylgu 93.7 0.16 3.5E-06 49.7 6.6 102 120-252 49-153 (377)
247 KOG1975 mRNA cap methyltransfe 93.7 0.32 6.9E-06 46.4 8.1 128 99-255 105-239 (389)
248 COG3129 Predicted SAM-dependen 93.4 0.17 3.6E-06 46.1 5.5 100 104-227 63-166 (292)
249 KOG0024 Sorbitol dehydrogenase 93.3 0.14 3.1E-06 48.7 5.1 42 119-160 168-212 (354)
250 PF01728 FtsJ: FtsJ-like methy 93.2 0.18 3.8E-06 43.7 5.4 50 100-153 4-59 (181)
251 PF11968 DUF3321: Putative met 93.0 0.8 1.7E-05 41.3 9.3 105 100-246 30-139 (219)
252 PF07091 FmrO: Ribosomal RNA m 92.9 0.64 1.4E-05 42.8 8.7 135 121-302 106-244 (251)
253 PF03141 Methyltransf_29: Puta 92.5 0.2 4.4E-06 50.2 5.2 129 91-257 87-223 (506)
254 KOG2915 tRNA(1-methyladenosine 92.4 2.1 4.5E-05 40.0 11.3 63 117-183 102-167 (314)
255 PF03686 UPF0146: Uncharacteri 92.1 0.5 1.1E-05 39.0 6.2 44 104-153 3-47 (127)
256 COG1867 TRM1 N2,N2-dimethylgua 91.6 0.32 7E-06 47.0 5.3 46 121-166 53-100 (380)
257 KOG2730 Methylase [General fun 91.3 0.36 7.9E-06 43.6 5.0 74 102-185 82-155 (263)
258 PF11599 AviRa: RRNA methyltra 90.9 0.46 9.9E-06 42.8 5.2 70 92-165 27-100 (246)
259 COG5459 Predicted rRNA methyla 90.9 0.23 4.9E-06 47.8 3.4 101 116-241 109-212 (484)
260 COG4262 Predicted spermidine s 89.7 0.92 2E-05 44.0 6.4 60 121-181 290-354 (508)
261 PF01555 N6_N4_Mtase: DNA meth 89.2 1.1 2.4E-05 39.4 6.4 56 101-160 176-231 (231)
262 PRK11524 putative methyltransf 88.4 1.9 4.1E-05 40.4 7.7 58 103-164 195-252 (284)
263 PF01189 Nol1_Nop2_Fmu: NOL1/N 87.7 4.1 8.9E-05 38.2 9.4 77 94-181 65-144 (283)
264 COG1565 Uncharacterized conser 87.4 2.3 4.9E-05 41.3 7.5 62 102-163 59-130 (370)
265 PRK13699 putative methylase; P 87.3 2.8 6.1E-05 38.0 7.9 57 104-164 151-207 (227)
266 PRK09424 pntA NAD(P) transhydr 87.1 1.1 2.5E-05 45.5 5.6 43 118-160 162-206 (509)
267 COG0293 FtsJ 23S rRNA methylas 86.4 1.5 3.3E-05 39.2 5.4 67 100-185 28-97 (205)
268 PF07757 AdoMet_MTase: Predict 86.3 1.1 2.5E-05 35.8 4.0 31 121-151 59-89 (112)
269 COG1063 Tdh Threonine dehydrog 86.0 1.4 3E-05 42.5 5.5 42 119-160 167-211 (350)
270 KOG2352 Predicted spermine/spe 85.5 6 0.00013 39.8 9.6 101 122-253 50-162 (482)
271 KOG1227 Putative methyltransfe 84.8 0.56 1.2E-05 44.2 2.0 72 96-167 167-243 (351)
272 cd00315 Cyt_C5_DNA_methylase C 84.1 2 4.4E-05 40.1 5.4 40 123-162 2-42 (275)
273 KOG2671 Putative RNA methylase 83.7 1.5 3.2E-05 42.3 4.2 64 119-185 207-277 (421)
274 PF02636 Methyltransf_28: Puta 83.5 1.5 3.2E-05 40.2 4.2 43 121-163 19-71 (252)
275 PF02737 3HCDH_N: 3-hydroxyacy 81.6 3.4 7.3E-05 36.0 5.5 104 123-243 1-106 (180)
276 KOG3178 Hydroxyindole-O-methyl 81.2 9.4 0.0002 36.8 8.7 93 122-251 179-274 (342)
277 PF04672 Methyltransf_19: S-ad 80.6 9.8 0.00021 35.5 8.4 114 122-254 70-191 (267)
278 COG1748 LYS9 Saccharopine dehy 80.4 5.5 0.00012 39.2 7.0 53 122-185 2-59 (389)
279 PLN03209 translocon at the inn 78.8 31 0.00068 35.8 12.1 68 117-185 76-150 (576)
280 KOG1269 SAM-dependent methyltr 78.4 6.8 0.00015 38.3 6.9 101 117-245 107-209 (364)
281 KOG2651 rRNA adenine N-6-methy 78.1 3.8 8.2E-05 40.1 5.0 39 118-156 150-190 (476)
282 PRK15001 SAM-dependent 23S rib 78.1 24 0.00051 34.7 10.7 65 95-167 24-89 (378)
283 PRK12826 3-ketoacyl-(acyl-carr 76.7 16 0.00035 32.3 8.6 60 119-185 4-67 (251)
284 PF03721 UDPG_MGDP_dh_N: UDP-g 75.2 3 6.6E-05 36.5 3.3 37 123-159 2-40 (185)
285 KOG1201 Hydroxysteroid 17-beta 74.9 13 0.00027 35.3 7.4 63 116-185 33-98 (300)
286 PF07279 DUF1442: Protein of u 73.7 62 0.0014 29.2 11.2 57 106-165 30-92 (218)
287 PF05050 Methyltransf_21: Meth 72.7 8.7 0.00019 31.8 5.4 42 126-167 1-50 (167)
288 PF05575 V_cholerae_RfbT: Vibr 72.6 2.9 6.3E-05 36.3 2.4 51 120-170 79-131 (286)
289 cd08283 FDH_like_1 Glutathione 72.6 11 0.00024 36.5 6.9 45 117-161 181-228 (386)
290 PRK11730 fadB multifunctional 72.5 9.3 0.0002 40.7 6.7 105 122-243 314-420 (715)
291 PRK07523 gluconate 5-dehydroge 72.4 24 0.00052 31.6 8.6 61 118-185 7-71 (255)
292 PF01488 Shikimate_DH: Shikima 71.6 9.9 0.00022 31.3 5.4 46 117-162 8-56 (135)
293 PRK06949 short chain dehydroge 71.4 28 0.00061 31.0 8.9 61 118-185 6-70 (258)
294 cd00401 AdoHcyase S-adenosyl-L 71.3 12 0.00026 37.2 6.8 43 117-159 198-242 (413)
295 PF00107 ADH_zinc_N: Zinc-bind 71.3 4.9 0.00011 32.1 3.5 31 130-160 1-32 (130)
296 TIGR03201 dearomat_had 6-hydro 70.8 15 0.00033 34.9 7.3 43 117-159 163-207 (349)
297 KOG1253 tRNA methyltransferase 70.6 1.8 3.8E-05 43.6 0.7 49 119-167 108-159 (525)
298 PRK08703 short chain dehydroge 70.6 24 0.00052 31.2 8.1 61 118-184 3-67 (239)
299 TIGR02437 FadB fatty oxidation 70.6 11 0.00023 40.3 6.6 105 122-243 314-420 (714)
300 PRK09880 L-idonate 5-dehydroge 70.5 16 0.00036 34.6 7.4 43 118-160 167-212 (343)
301 PRK08213 gluconate 5-dehydroge 70.5 28 0.00061 31.2 8.7 61 118-185 9-73 (259)
302 TIGR03366 HpnZ_proposed putati 70.5 15 0.00033 33.7 7.0 42 119-160 119-163 (280)
303 cd01078 NAD_bind_H4MPT_DH NADP 70.3 35 0.00075 29.6 8.9 46 117-162 24-72 (194)
304 PF02086 MethyltransfD12: D12 70.3 5.8 0.00013 36.0 4.1 53 104-159 7-59 (260)
305 KOG0725 Reductases with broad 70.3 82 0.0018 29.2 11.8 66 117-185 4-72 (270)
306 PRK06124 gluconate 5-dehydroge 70.3 28 0.00061 31.1 8.6 63 117-185 7-72 (256)
307 KOG1331 Predicted methyltransf 70.2 5.6 0.00012 37.3 3.9 120 86-251 20-143 (293)
308 cd01080 NAD_bind_m-THF_DH_Cycl 70.1 11 0.00024 32.5 5.5 50 97-152 26-78 (168)
309 cd08237 ribitol-5-phosphate_DH 69.4 8.3 0.00018 36.7 5.1 41 119-159 162-206 (341)
310 cd01075 NAD_bind_Leu_Phe_Val_D 69.3 33 0.00071 30.3 8.6 43 116-160 23-69 (200)
311 TIGR00006 S-adenosyl-methyltra 68.9 29 0.00063 33.0 8.5 46 119-164 19-66 (305)
312 KOG4058 Uncharacterized conser 68.1 16 0.00036 31.2 5.9 56 122-181 74-130 (199)
313 PRK06172 short chain dehydroge 67.7 34 0.00073 30.5 8.5 61 119-185 5-68 (253)
314 TIGR02441 fa_ox_alpha_mit fatt 67.7 10 0.00022 40.5 5.8 105 122-243 336-442 (737)
315 PRK08945 putative oxoacyl-(acy 67.6 30 0.00064 30.8 8.1 60 117-182 8-71 (247)
316 PRK05708 2-dehydropantoate 2-r 67.3 34 0.00074 32.2 8.7 39 122-160 3-43 (305)
317 PRK05867 short chain dehydroge 67.2 34 0.00073 30.6 8.4 61 119-185 7-70 (253)
318 KOG1596 Fibrillarin and relate 67.0 1.1E+02 0.0024 28.5 12.7 61 92-152 127-191 (317)
319 cd08254 hydroxyacyl_CoA_DH 6-h 66.8 22 0.00047 33.1 7.3 43 118-160 163-207 (338)
320 PF13578 Methyltransf_24: Meth 66.8 4.3 9.3E-05 31.5 2.1 52 125-181 1-57 (106)
321 PRK08862 short chain dehydroge 65.6 35 0.00075 30.4 8.1 60 119-184 3-65 (227)
322 PF00145 DNA_methylase: C-5 cy 65.3 16 0.00034 34.1 6.0 41 123-163 2-43 (335)
323 PRK07814 short chain dehydroge 64.7 42 0.0009 30.3 8.6 61 118-185 7-71 (263)
324 PRK08339 short chain dehydroge 64.5 44 0.00096 30.3 8.8 63 118-185 5-70 (263)
325 PRK09242 tropinone reductase; 64.5 45 0.00098 29.8 8.7 64 118-185 6-72 (257)
326 PRK06125 short chain dehydroge 64.3 45 0.00097 29.9 8.7 62 119-185 5-69 (259)
327 cd05188 MDR Medium chain reduc 64.2 31 0.00067 30.6 7.5 41 119-159 133-175 (271)
328 PF04989 CmcI: Cephalosporin h 62.8 38 0.00083 30.4 7.6 128 94-251 10-145 (206)
329 TIGR02818 adh_III_F_hyde S-(hy 62.7 15 0.00032 35.4 5.5 43 118-160 183-228 (368)
330 TIGR02279 PaaC-3OHAcCoADH 3-hy 62.6 19 0.00041 36.7 6.4 43 122-164 6-50 (503)
331 PRK07666 fabG 3-ketoacyl-(acyl 62.5 56 0.0012 28.8 8.9 60 119-185 5-68 (239)
332 PRK12548 shikimate 5-dehydroge 62.0 38 0.00083 31.7 7.9 34 118-152 123-160 (289)
333 PRK06181 short chain dehydroge 61.9 1.2E+02 0.0026 27.1 11.3 57 122-185 2-62 (263)
334 cd08239 THR_DH_like L-threonin 61.9 27 0.00059 32.8 7.0 42 118-159 161-205 (339)
335 TIGR01963 PHB_DH 3-hydroxybuty 61.8 43 0.00094 29.6 8.1 58 121-185 1-62 (255)
336 COG1004 Ugd Predicted UDP-gluc 61.8 13 0.00027 36.7 4.7 37 123-159 2-40 (414)
337 PLN02740 Alcohol dehydrogenase 61.7 14 0.00031 35.6 5.2 43 117-159 195-240 (381)
338 PRK05876 short chain dehydroge 61.3 50 0.0011 30.3 8.5 62 118-185 3-67 (275)
339 PRK05786 fabG 3-ketoacyl-(acyl 60.7 53 0.0012 28.8 8.4 59 119-185 3-65 (238)
340 PLN02657 3,8-divinyl protochlo 60.6 69 0.0015 31.3 9.8 62 117-185 56-123 (390)
341 PRK12429 3-hydroxybutyrate deh 60.6 58 0.0013 28.8 8.7 60 119-185 2-65 (258)
342 PF05206 TRM13: Methyltransfer 60.5 21 0.00046 33.1 5.8 65 120-187 18-92 (259)
343 TIGR02822 adh_fam_2 zinc-bindi 60.3 29 0.00062 32.8 6.9 44 117-160 162-207 (329)
344 PRK07454 short chain dehydroge 60.0 57 0.0012 28.8 8.4 59 120-185 5-67 (241)
345 PRK07774 short chain dehydroge 59.9 62 0.0013 28.6 8.7 60 119-185 4-67 (250)
346 PRK07102 short chain dehydroge 59.8 56 0.0012 28.9 8.4 58 122-185 2-63 (243)
347 PRK07097 gluconate 5-dehydroge 59.6 58 0.0012 29.4 8.5 62 118-185 7-71 (265)
348 TIGR02354 thiF_fam2 thiamine b 59.4 77 0.0017 28.0 9.0 34 118-151 18-54 (200)
349 COG1064 AdhP Zn-dependent alco 59.3 19 0.00042 34.7 5.4 44 117-160 163-208 (339)
350 PRK07063 short chain dehydroge 58.8 67 0.0014 28.7 8.8 64 118-185 4-70 (260)
351 PRK07066 3-hydroxybutyryl-CoA 58.3 23 0.0005 33.9 5.8 42 122-163 8-51 (321)
352 PRK07326 short chain dehydroge 58.2 56 0.0012 28.6 8.1 59 119-185 4-66 (237)
353 TIGR00561 pntA NAD(P) transhyd 58.0 20 0.00044 36.6 5.6 42 119-160 162-205 (511)
354 PRK08085 gluconate 5-dehydroge 57.7 64 0.0014 28.7 8.5 61 119-185 7-70 (254)
355 PRK07062 short chain dehydroge 56.7 80 0.0017 28.3 8.9 64 118-185 5-71 (265)
356 PRK11154 fadJ multifunctional 56.7 29 0.00063 36.9 6.8 105 122-243 310-417 (708)
357 PRK07035 short chain dehydroge 56.5 75 0.0016 28.2 8.7 62 118-185 5-69 (252)
358 PRK00258 aroE shikimate 5-dehy 56.4 59 0.0013 30.2 8.1 46 117-162 119-167 (278)
359 PRK06113 7-alpha-hydroxysteroi 56.1 80 0.0017 28.1 8.8 62 118-185 8-72 (255)
360 KOG2798 Putative trehalase [Ca 56.1 50 0.0011 31.7 7.4 46 120-167 150-195 (369)
361 TIGR03206 benzo_BadH 2-hydroxy 55.5 77 0.0017 27.9 8.5 60 119-185 1-64 (250)
362 cd08281 liver_ADH_like1 Zinc-d 55.4 43 0.00092 32.1 7.2 43 118-160 189-234 (371)
363 PLN02662 cinnamyl-alcohol dehy 55.3 50 0.0011 30.6 7.5 61 120-185 3-67 (322)
364 TIGR03451 mycoS_dep_FDH mycoth 55.2 22 0.00048 33.9 5.2 42 118-159 174-218 (358)
365 PRK07890 short chain dehydroge 55.1 82 0.0018 28.0 8.7 61 119-185 3-66 (258)
366 COG1062 AdhC Zn-dependent alco 55.0 26 0.00057 33.9 5.5 42 118-159 183-227 (366)
367 PLN00203 glutamyl-tRNA reducta 55.0 1.2E+02 0.0026 31.2 10.6 68 89-160 238-308 (519)
368 PLN02668 indole-3-acetate carb 54.8 9 0.0002 37.7 2.4 33 120-152 63-112 (386)
369 PRK14106 murD UDP-N-acetylmura 54.8 53 0.0012 32.4 8.0 32 119-152 3-38 (450)
370 TIGR00675 dcm DNA-methyltransf 54.4 23 0.0005 33.6 5.1 40 124-163 1-41 (315)
371 PLN02896 cinnamyl-alcohol dehy 54.0 2E+02 0.0043 27.2 11.9 60 118-185 7-70 (353)
372 KOG4589 Cell division protein 53.6 20 0.00044 31.9 4.1 33 119-151 68-103 (232)
373 PRK06139 short chain dehydroge 53.6 71 0.0015 30.4 8.3 61 119-185 5-68 (330)
374 PLN02780 ketoreductase/ oxidor 53.5 62 0.0013 30.6 7.9 60 120-183 52-114 (320)
375 PRK06194 hypothetical protein; 53.4 80 0.0017 28.7 8.5 60 119-185 4-67 (287)
376 PRK05866 short chain dehydroge 53.2 81 0.0018 29.2 8.6 61 118-185 37-101 (293)
377 KOG1122 tRNA and rRNA cytosine 52.9 1.7E+02 0.0038 29.2 10.8 59 120-183 241-302 (460)
378 PRK06935 2-deoxy-D-gluconate 3 52.8 84 0.0018 28.1 8.4 61 118-185 12-75 (258)
379 PRK12939 short chain dehydroge 52.8 1E+02 0.0022 27.1 8.8 61 118-185 4-68 (250)
380 PRK05854 short chain dehydroge 52.4 99 0.0021 28.9 9.1 65 117-185 10-77 (313)
381 PRK08223 hypothetical protein; 52.2 14 0.0003 34.9 3.1 45 118-162 24-71 (287)
382 TIGR00027 mthyl_TIGR00027 meth 52.2 81 0.0018 29.1 8.2 102 122-244 83-190 (260)
383 PRK05565 fabG 3-ketoacyl-(acyl 52.2 94 0.002 27.2 8.5 60 119-185 3-67 (247)
384 PLN03154 putative allyl alcoho 52.0 54 0.0012 31.3 7.3 43 117-159 155-200 (348)
385 PRK06718 precorrin-2 dehydroge 51.7 78 0.0017 28.0 7.8 33 118-150 7-41 (202)
386 PF06962 rRNA_methylase: Putat 51.7 1.4E+02 0.0031 25.0 8.8 32 144-179 1-32 (140)
387 cd08300 alcohol_DH_class_III c 51.4 31 0.00067 33.1 5.6 42 118-159 184-228 (368)
388 cd00757 ThiF_MoeB_HesA_family 51.3 50 0.0011 29.6 6.6 35 118-152 18-55 (228)
389 cd08230 glucose_DH Glucose deh 51.0 30 0.00066 32.9 5.4 41 119-159 171-216 (355)
390 PRK07677 short chain dehydroge 50.9 95 0.0021 27.6 8.4 58 121-184 1-61 (252)
391 PLN02214 cinnamoyl-CoA reducta 50.4 2.3E+02 0.0049 26.9 12.4 35 118-153 7-45 (342)
392 PRK05599 hypothetical protein; 50.4 79 0.0017 28.3 7.8 58 122-185 1-61 (246)
393 PRK08277 D-mannonate oxidoredu 50.4 99 0.0021 28.0 8.6 62 118-185 7-71 (278)
394 PRK07831 short chain dehydroge 50.3 1.2E+02 0.0026 27.1 9.1 65 117-185 13-81 (262)
395 PRK05653 fabG 3-ketoacyl-(acyl 50.0 1.1E+02 0.0024 26.7 8.6 60 119-185 3-66 (246)
396 PRK07067 sorbitol dehydrogenas 49.8 89 0.0019 27.8 8.1 57 119-185 4-64 (257)
397 COG1893 ApbA Ketopantoate redu 49.7 62 0.0013 30.7 7.2 91 122-243 1-93 (307)
398 PRK07231 fabG 3-ketoacyl-(acyl 49.7 1E+02 0.0022 27.1 8.4 60 119-185 3-65 (251)
399 PRK07478 short chain dehydroge 49.5 1.1E+02 0.0024 27.2 8.6 61 119-185 4-67 (254)
400 PRK07576 short chain dehydroge 49.4 1.1E+02 0.0023 27.7 8.6 61 119-185 7-70 (264)
401 PRK06720 hypothetical protein; 49.4 1.3E+02 0.0028 25.7 8.6 60 119-184 14-76 (169)
402 PF00670 AdoHcyase_NAD: S-aden 49.3 65 0.0014 27.8 6.5 34 117-152 19-56 (162)
403 PF04445 SAM_MT: Putative SAM- 49.3 34 0.00073 31.3 5.0 37 123-159 78-114 (234)
404 PLN02827 Alcohol dehydrogenase 49.2 33 0.00072 33.2 5.4 43 117-159 190-235 (378)
405 PRK06138 short chain dehydroge 48.8 1E+02 0.0022 27.1 8.3 60 119-185 3-65 (252)
406 COG1250 FadB 3-hydroxyacyl-CoA 48.7 44 0.00095 31.9 5.9 105 122-243 4-110 (307)
407 PRK09186 flagellin modificatio 48.5 1.2E+02 0.0025 26.9 8.6 62 119-185 2-67 (256)
408 TIGR01202 bchC 2-desacetyl-2-h 48.0 29 0.00062 32.5 4.6 40 119-158 143-185 (308)
409 cd08301 alcohol_DH_plants Plan 47.9 36 0.00077 32.6 5.4 43 117-159 184-229 (369)
410 PRK08643 acetoin reductase; Va 47.9 1.1E+02 0.0024 27.1 8.4 58 121-185 2-63 (256)
411 PRK08265 short chain dehydroge 47.5 1.1E+02 0.0023 27.6 8.2 57 119-185 4-64 (261)
412 PRK06035 3-hydroxyacyl-CoA deh 47.5 43 0.00093 31.2 5.7 42 122-163 4-47 (291)
413 PRK07688 thiamine/molybdopteri 47.5 1.8E+02 0.004 27.9 10.1 35 118-152 21-58 (339)
414 PRK03369 murD UDP-N-acetylmura 47.4 36 0.00077 34.4 5.5 41 117-157 8-50 (488)
415 COG3510 CmcI Cephalosporin hyd 47.0 99 0.0021 27.7 7.3 126 93-248 46-177 (237)
416 PF04072 LCM: Leucine carboxyl 47.0 42 0.00092 29.0 5.2 96 122-237 80-182 (183)
417 PRK09291 short chain dehydroge 46.8 1.1E+02 0.0023 27.1 8.1 58 121-185 2-63 (257)
418 PRK10309 galactitol-1-phosphat 46.7 36 0.00077 32.2 5.1 43 117-159 157-202 (347)
419 COG0686 Ald Alanine dehydrogen 46.5 71 0.0015 30.7 6.8 121 101-256 141-272 (371)
420 PRK08217 fabG 3-ketoacyl-(acyl 46.4 1.3E+02 0.0028 26.4 8.5 59 119-184 3-65 (253)
421 PRK07819 3-hydroxybutyryl-CoA 46.2 47 0.001 31.0 5.7 42 123-164 7-50 (286)
422 PRK06914 short chain dehydroge 46.1 1.3E+02 0.0028 27.2 8.6 62 120-185 2-66 (280)
423 PRK08251 short chain dehydroge 45.9 1.3E+02 0.0029 26.4 8.5 60 121-185 2-65 (248)
424 PRK07533 enoyl-(acyl carrier p 45.7 1.1E+02 0.0024 27.5 8.1 40 117-156 6-50 (258)
425 KOG2539 Mitochondrial/chloropl 45.4 26 0.00055 35.3 3.9 89 117-229 197-289 (491)
426 PRK05562 precorrin-2 dehydroge 45.1 1.1E+02 0.0023 27.9 7.6 40 119-158 23-66 (223)
427 PRK12384 sorbitol-6-phosphate 45.1 1.4E+02 0.0031 26.5 8.7 60 121-185 2-65 (259)
428 PRK07904 short chain dehydroge 44.9 1.1E+02 0.0023 27.6 7.8 61 120-185 7-72 (253)
429 cd08232 idonate-5-DH L-idonate 44.8 78 0.0017 29.5 7.1 40 120-159 165-207 (339)
430 PRK12935 acetoacetyl-CoA reduc 44.4 1.5E+02 0.0032 26.2 8.5 60 119-185 4-68 (247)
431 cd08277 liver_alcohol_DH_like 44.3 44 0.00096 31.9 5.4 43 117-159 181-226 (365)
432 PRK08268 3-hydroxy-acyl-CoA de 44.2 45 0.00098 34.0 5.6 43 122-164 8-52 (507)
433 PRK12475 thiamine/molybdopteri 44.2 65 0.0014 31.0 6.4 36 117-152 20-58 (338)
434 PF11899 DUF3419: Protein of u 44.1 80 0.0017 31.0 7.1 61 95-163 17-78 (380)
435 cd08238 sorbose_phosphate_red 43.8 43 0.00093 32.8 5.3 43 119-161 174-222 (410)
436 PRK07791 short chain dehydroge 43.8 1.3E+02 0.0028 27.7 8.3 62 118-185 3-76 (286)
437 PRK07889 enoyl-(acyl carrier p 43.7 88 0.0019 28.2 7.0 59 118-185 4-69 (256)
438 COG0300 DltE Short-chain dehyd 43.6 1.7E+02 0.0036 27.4 8.8 63 118-185 3-68 (265)
439 COG0863 DNA modification methy 43.3 1.1E+02 0.0024 28.1 7.8 50 117-166 219-268 (302)
440 PF01262 AlaDh_PNT_C: Alanine 43.2 43 0.00093 28.5 4.6 44 117-160 16-61 (168)
441 PRK08293 3-hydroxybutyryl-CoA 43.1 55 0.0012 30.4 5.7 42 122-163 4-47 (287)
442 PF03141 Methyltransf_29: Puta 42.9 32 0.00069 34.9 4.2 93 122-251 367-465 (506)
443 PRK05875 short chain dehydroge 42.8 1.5E+02 0.0033 26.6 8.6 62 119-185 5-70 (276)
444 PRK09072 short chain dehydroge 42.8 1.5E+02 0.0033 26.4 8.5 60 119-185 3-65 (263)
445 TIGR03589 PseB UDP-N-acetylglu 42.7 2.9E+02 0.0063 25.9 11.2 58 119-185 2-65 (324)
446 PLN02989 cinnamyl-alcohol dehy 42.6 1.2E+02 0.0027 28.1 8.1 61 120-185 4-68 (325)
447 cd08255 2-desacetyl-2-hydroxye 42.4 94 0.002 27.9 7.1 43 117-159 94-139 (277)
448 PRK06940 short chain dehydroge 42.4 1.4E+02 0.003 27.3 8.2 56 122-185 3-61 (275)
449 PRK08303 short chain dehydroge 42.3 1.3E+02 0.0027 28.2 8.1 34 118-151 5-41 (305)
450 COG0499 SAM1 S-adenosylhomocys 42.2 40 0.00088 32.9 4.6 42 117-158 205-249 (420)
451 PRK12825 fabG 3-ketoacyl-(acyl 42.2 1.5E+02 0.0032 25.8 8.2 60 119-185 4-68 (249)
452 PRK08589 short chain dehydroge 42.1 1.7E+02 0.0037 26.5 8.7 60 119-185 4-66 (272)
453 PF10237 N6-adenineMlase: Prob 41.5 2.3E+02 0.0049 24.3 9.7 105 101-244 11-116 (162)
454 cd08294 leukotriene_B4_DH_like 41.5 98 0.0021 28.6 7.2 44 117-160 140-186 (329)
455 TIGR00518 alaDH alanine dehydr 41.5 54 0.0012 32.0 5.5 42 119-160 165-208 (370)
456 PRK12829 short chain dehydroge 41.3 1.4E+02 0.0031 26.4 8.1 60 117-185 7-70 (264)
457 TIGR02825 B4_12hDH leukotriene 41.3 1E+02 0.0022 28.6 7.3 43 117-159 135-180 (325)
458 PRK01747 mnmC bifunctional tRN 40.9 1.6E+02 0.0034 31.0 9.2 31 122-152 59-103 (662)
459 TIGR01809 Shik-DH-AROM shikima 40.8 1.4E+02 0.003 27.8 8.0 42 118-159 122-166 (282)
460 PRK13394 3-hydroxybutyrate deh 40.7 1.7E+02 0.0038 25.8 8.5 60 119-185 5-68 (262)
461 PRK05872 short chain dehydroge 40.6 1.4E+02 0.0031 27.5 8.1 62 117-185 5-69 (296)
462 PRK07109 short chain dehydroge 40.6 1.7E+02 0.0037 27.7 8.8 62 118-185 5-69 (334)
463 PRK07530 3-hydroxybutyryl-CoA 40.4 64 0.0014 29.9 5.7 44 122-165 5-50 (292)
464 PRK06482 short chain dehydroge 40.0 1.4E+02 0.0029 27.0 7.7 54 122-185 3-60 (276)
465 cd08245 CAD Cinnamyl alcohol d 40.0 1.1E+02 0.0025 28.2 7.4 43 117-159 159-203 (330)
466 PRK08762 molybdopterin biosynt 39.8 60 0.0013 31.6 5.6 33 119-151 133-168 (376)
467 PRK07825 short chain dehydroge 39.6 1.5E+02 0.0032 26.7 7.9 57 119-185 3-62 (273)
468 PRK07792 fabG 3-ketoacyl-(acyl 39.5 2E+02 0.0043 26.7 8.9 62 117-184 8-73 (306)
469 cd08295 double_bond_reductase_ 39.3 1.1E+02 0.0024 28.7 7.2 44 117-160 148-194 (338)
470 PRK08306 dipicolinate synthase 39.3 1.2E+02 0.0027 28.4 7.5 41 117-157 148-190 (296)
471 PRK05650 short chain dehydroge 39.2 1.7E+02 0.0037 26.3 8.2 57 122-185 1-61 (270)
472 TIGR02440 FadJ fatty oxidation 39.2 60 0.0013 34.6 5.8 42 122-163 305-349 (699)
473 PRK06198 short chain dehydroge 39.0 1.9E+02 0.004 25.7 8.4 61 118-185 3-68 (260)
474 PLN02178 cinnamyl-alcohol dehy 38.8 57 0.0012 31.6 5.3 34 120-153 178-213 (375)
475 PF12242 Eno-Rase_NADH_b: NAD( 38.8 70 0.0015 24.1 4.4 32 119-150 36-72 (78)
476 PRK12828 short chain dehydroge 38.6 1.5E+02 0.0033 25.6 7.6 35 119-154 5-43 (239)
477 PLN02586 probable cinnamyl alc 38.5 50 0.0011 31.7 4.7 35 119-153 182-218 (360)
478 PF03435 Saccharop_dh: Sacchar 38.4 1.7E+02 0.0037 28.2 8.5 52 124-185 1-58 (386)
479 COG0604 Qor NADPH:quinone redu 38.2 1.5E+02 0.0032 28.2 7.9 39 118-156 140-181 (326)
480 KOG2912 Predicted DNA methylas 38.1 39 0.00085 32.5 3.7 41 125-167 107-151 (419)
481 PRK06200 2,3-dihydroxy-2,3-dih 38.0 1.6E+02 0.0036 26.2 7.9 41 119-159 4-47 (263)
482 TIGR00507 aroE shikimate 5-deh 37.7 1.9E+02 0.0041 26.5 8.4 44 118-162 114-160 (270)
483 COG5379 BtaA S-adenosylmethion 37.7 80 0.0017 30.2 5.6 64 94-164 44-107 (414)
484 TIGR01832 kduD 2-deoxy-D-gluco 37.7 1.9E+02 0.0041 25.4 8.1 58 119-185 3-64 (248)
485 PRK12549 shikimate 5-dehydroge 37.6 2.6E+02 0.0056 26.1 9.3 45 118-162 124-171 (284)
486 PRK05717 oxidoreductase; Valid 37.5 1.8E+02 0.0039 25.8 8.1 59 117-185 6-68 (255)
487 PRK05808 3-hydroxybutyryl-CoA 37.4 71 0.0015 29.5 5.5 40 123-162 5-46 (282)
488 PRK07775 short chain dehydroge 37.4 2.1E+02 0.0046 25.9 8.6 60 119-185 8-71 (274)
489 PRK02318 mannitol-1-phosphate 37.3 43 0.00094 32.7 4.1 40 122-161 1-43 (381)
490 TIGR01381 E1_like_apg7 E1-like 37.1 35 0.00077 35.9 3.6 34 118-151 335-371 (664)
491 PRK15057 UDP-glucose 6-dehydro 36.9 43 0.00094 32.9 4.1 35 124-160 3-40 (388)
492 TIGR02356 adenyl_thiF thiazole 36.8 1.4E+02 0.003 26.3 7.0 35 118-152 18-55 (202)
493 cd00755 YgdL_like Family of ac 36.7 2E+02 0.0043 26.1 8.1 34 119-152 9-45 (231)
494 cd08296 CAD_like Cinnamyl alco 36.7 1.3E+02 0.0028 28.1 7.2 42 118-159 161-204 (333)
495 PTZ00245 ubiquitin activating 36.6 92 0.002 29.2 5.8 47 118-165 23-73 (287)
496 PRK05597 molybdopterin biosynt 36.6 25 0.00054 34.1 2.3 35 118-152 25-62 (355)
497 cd01483 E1_enzyme_family Super 36.5 60 0.0013 26.5 4.4 30 123-152 1-33 (143)
498 PRK06129 3-hydroxyacyl-CoA deh 36.5 74 0.0016 29.9 5.5 41 123-163 4-46 (308)
499 TIGR00936 ahcY adenosylhomocys 36.3 69 0.0015 31.8 5.4 36 118-153 192-229 (406)
500 cd08285 NADP_ADH NADP(H)-depen 36.1 76 0.0016 29.9 5.6 43 117-159 163-208 (351)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.96 E-value=8.4e-30 Score=222.18 Aligned_cols=153 Identities=37% Similarity=0.591 Sum_probs=97.0
Q ss_pred eEEEecccccCCCCcCeEeechHHHHHHHHhhhcC---CCCCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHH
Q 020158 80 NVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMC---TSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYI 154 (330)
Q Consensus 80 ~i~i~~~~~t~~~~~G~~vW~aa~~La~~l~~~~~---~~~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~ 154 (330)
.+.|.+.. ..++|.++|+||++|++||..+.. .+..+++++|||||||+|++||++|+. +.+|++||+++ +
T Consensus 5 ~l~i~e~~---~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~ 80 (173)
T PF10294_consen 5 TLQIEEDW---GDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-V 80 (173)
T ss_dssp ---------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--H
T ss_pred cccccccc---ccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-h
Confidence 45555543 248899999999999999998531 136789999999999999999999999 78999999997 9
Q ss_pred HHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHH
Q 020158 155 LDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALF 234 (330)
Q Consensus 155 L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~ 234 (330)
+++++.|++.|.... ..++.+..|+|++.... +.....+||+||||||+|++..+++|+
T Consensus 81 l~~l~~Ni~~N~~~~--~~~v~v~~L~Wg~~~~~-------------------~~~~~~~~D~IlasDv~Y~~~~~~~L~ 139 (173)
T PF10294_consen 81 LELLRRNIELNGSLL--DGRVSVRPLDWGDELDS-------------------DLLEPHSFDVILASDVLYDEELFEPLV 139 (173)
T ss_dssp HHHHHHHHHTT----------EEEE--TTS-HHH-------------------HHHS-SSBSEEEEES--S-GGGHHHHH
T ss_pred hHHHHHHHHhccccc--cccccCcEEEecCcccc-------------------cccccccCCEEEEecccchHHHHHHHH
Confidence 999999999998422 57899999999985210 111235899999999999999999999
Q ss_pred HHHHHhccCCCCeEEEEEeeeeCcc
Q 020158 235 HTLKRLMPLGSKKVLYLALEKRYNF 259 (330)
Q Consensus 235 ~tl~~lL~~~~~~~i~va~~~R~~f 259 (330)
+||.+++++++. +|++++.|...
T Consensus 140 ~tl~~ll~~~~~--vl~~~~~R~~~ 162 (173)
T PF10294_consen 140 RTLKRLLKPNGK--VLLAYKRRRKS 162 (173)
T ss_dssp HHHHHHBTT-TT--EEEEEE-S-TG
T ss_pred HHHHHHhCCCCE--EEEEeCEecHH
Confidence 999999988755 99999999654
No 2
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.6e-19 Score=151.75 Aligned_cols=140 Identities=27% Similarity=0.350 Sum_probs=111.6
Q ss_pred CCCcCe-EeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCc-cCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHcc
Q 020158 91 IPSVGL-QVWKAELVLADFVMHKMCTSSDFNGIISLELGAG-TGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 91 ~~~~G~-~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~G-tGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
.++||. .+||++..||.+++++ +..++|++|||||.| |||.|+.+|..+ +.|..||.+...+.++++-+..|.
T Consensus 2 fdntgnvciwpseeala~~~l~~---~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~ 78 (201)
T KOG3201|consen 2 FDNTGNVCIWPSEEALAWTILRD---PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM 78 (201)
T ss_pred cCCCCcEEecccHHHHHHHHHhc---hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc
Confidence 356675 5999999999999988 578999999999999 799999999875 799999999999999999998884
Q ss_pred CCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 167 GVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 167 ~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
..- ..++.+.+.+|..... ......||+|+||||+|.++.++.|+++|+.+|+|.+.
T Consensus 79 ~s~--~tsc~vlrw~~~~aqs---------------------q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 79 ASS--LTSCCVLRWLIWGAQS---------------------QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred ccc--cceehhhHHHHhhhHH---------------------HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccc
Confidence 321 2444444444333211 12335899999999999999999999999999988655
Q ss_pred eEEEEEeeeeCc
Q 020158 247 KVLYLALEKRYN 258 (330)
Q Consensus 247 ~~i~va~~~R~~ 258 (330)
+++..++|.+
T Consensus 136 --Al~fsPRRg~ 145 (201)
T KOG3201|consen 136 --ALLFSPRRGQ 145 (201)
T ss_pred --eeEecCcccc
Confidence 5566688876
No 3
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.74 E-value=1.2e-17 Score=151.84 Aligned_cols=144 Identities=31% Similarity=0.434 Sum_probs=116.6
Q ss_pred CCcCeEeechHHHHHHHHhhhcCCC------CCCC--CCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHH
Q 020158 92 PSVGLQVWKAELVLADFVMHKMCTS------SDFN--GIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 92 ~~~G~~vW~aa~~La~~l~~~~~~~------~~~~--g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv 162 (330)
......+|+++-.+|.++..+..++ ..++ .++|||||+|||++|+.+|.. +..|+.||.. .++.+++.|.
T Consensus 50 ~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~-~~~~~L~~~~ 128 (248)
T KOG2793|consen 50 QGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLP-KVVENLKFNR 128 (248)
T ss_pred cceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCch-hhHHHHHHhh
Confidence 4567899999999999998875311 1123 557999999999999999995 7899999995 8888888888
Q ss_pred HHccCCCCC-CCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCC-eeEEEEeccccCcccHHHHHHHHHHh
Q 020158 163 QLNSGVFSH-QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQR-ASVLLAADVIYSDDLTDALFHTLKRL 240 (330)
Q Consensus 163 ~~N~~~~~~-~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~DlIlaaDviY~~~~~~~l~~tl~~l 240 (330)
..|....+. ...+.+..|+|++...... .... +|+||||||+|++...+.++.++..+
T Consensus 129 ~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~--------------------~~~~~~DlilasDvvy~~~~~e~Lv~tla~l 188 (248)
T KOG2793|consen 129 DKNNIALNQLGGSVIVAILVWGNALDVSF--------------------RLPNPFDLILASDVVYEEESFEGLVKTLAFL 188 (248)
T ss_pred hhhhhhhhhcCCceeEEEEecCCcccHhh--------------------ccCCcccEEEEeeeeecCCcchhHHHHHHHH
Confidence 777665543 4489999999999754321 1234 89999999999999999999999999
Q ss_pred ccCCCCeEEEEEeeeeCc
Q 020158 241 MPLGSKKVLYLALEKRYN 258 (330)
Q Consensus 241 L~~~~~~~i~va~~~R~~ 258 (330)
|..++ ++++++..|..
T Consensus 189 l~~~~--~i~l~~~lr~~ 204 (248)
T KOG2793|consen 189 LAKDG--TIFLAYPLRRD 204 (248)
T ss_pred HhcCC--eEEEEEecccc
Confidence 97764 88899888864
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.73 E-value=5.9e-18 Score=146.70 Aligned_cols=136 Identities=24% Similarity=0.325 Sum_probs=111.0
Q ss_pred CCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCC
Q 020158 92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFS 170 (330)
Q Consensus 92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~ 170 (330)
+..+...|.+++.||+|+..+ |+.++||+|||+|+|.||++|++|+.| +.|+.+|+.|..+.+++.|++.|+
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~---PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang---- 126 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDH---PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG---- 126 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcC---ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc----
Confidence 446788999999999999998 689999999999999999999999996 589999999999999999999997
Q ss_pred CCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEE
Q 020158 171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLY 250 (330)
Q Consensus 171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~ 250 (330)
..+.+...|-.. ....||+||++|++|+....+.++.++.++...| ..++
T Consensus 127 --v~i~~~~~d~~g--------------------------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g--~~vl 176 (218)
T COG3897 127 --VSILFTHADLIG--------------------------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAG--AAVL 176 (218)
T ss_pred --ceeEEeeccccC--------------------------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCC--CEEE
Confidence 345555444322 1247999999999999999999999777777543 4566
Q ss_pred EEeeeeCcccccch
Q 020158 251 LALEKRYNFSLNDL 264 (330)
Q Consensus 251 va~~~R~~f~~~~~ 264 (330)
+..+.|..+-..+|
T Consensus 177 vgdp~R~~lpk~~l 190 (218)
T COG3897 177 VGDPGRAYLPKKRL 190 (218)
T ss_pred EeCCCCCCCchhhh
Confidence 75556655544444
No 5
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.44 E-value=3.4e-13 Score=121.31 Aligned_cols=131 Identities=17% Similarity=0.247 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
+.|++|||+|||.|+++..+|+.|++|++.|.++.+++.++..+..|+.. .+|....
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-----------i~y~~~~------------ 114 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-----------IDYRQAT------------ 114 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc-----------ccchhhh------------
Confidence 78999999999999999999999999999999999999999999887632 2222211
Q ss_pred ccccccCccchh-ccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeeeeCcccccc--------hhhhcc
Q 020158 199 QERYSWNSSELK-EVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEKRYNFSLND--------LDVVAN 269 (330)
Q Consensus 199 ~~~~~w~~~~~~-~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~R~~f~~~~--------~d~v~~ 269 (330)
.+++. ..++||+|+|.+|+.+-...+.+++.+.++++|+ +.+++|...|+.-.+.. +..+..
T Consensus 115 -------~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~--G~lf~STinrt~ka~~~~i~~ae~vl~~vP~ 185 (243)
T COG2227 115 -------VEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPG--GILFLSTINRTLKAYLLAIIGAEYVLRIVPK 185 (243)
T ss_pred -------HHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCC--cEEEEeccccCHHHHHHHHHHHHHHHHhcCC
Confidence 01122 2369999999999999999999999999999875 67888888887533211 234445
Q ss_pred ccchhhhhhhhh
Q 020158 270 GYSHFRSYIMEE 281 (330)
Q Consensus 270 ~y~~f~~~l~~~ 281 (330)
+--.++.+++..
T Consensus 186 gTH~~~k~irp~ 197 (243)
T COG2227 186 GTHDYRKFIKPA 197 (243)
T ss_pred cchhHHHhcCHH
Confidence 555566666544
No 6
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.44 E-value=2.8e-12 Score=111.32 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=90.7
Q ss_pred chHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC--eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 020158 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (330)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~--~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v 177 (330)
.++.+|++++... ++++|||||||+|.+|+.+++.+. +|+++|+++.+++.+++|+..|+. ..+.+
T Consensus 18 ~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~ 85 (170)
T PF05175_consen 18 AGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-----ENVEV 85 (170)
T ss_dssp HHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEE
T ss_pred HHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----ccccc
Confidence 3677888888654 567999999999999999999864 599999999999999999999984 33888
Q ss_pred EEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcc-----cHHHHHHHHHHhccCCCCeEEEEE
Q 020158 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~-----~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
...||.+..+ ..+||+|+++-.++... ....+++...++|+++ +.+++.
T Consensus 86 ~~~d~~~~~~------------------------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~--G~l~lv 139 (170)
T PF05175_consen 86 VQSDLFEALP------------------------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG--GRLFLV 139 (170)
T ss_dssp EESSTTTTCC------------------------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE--EEEEEE
T ss_pred cccccccccc------------------------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC--CEEEEE
Confidence 8888876421 35899999998877654 4788899999999775 445443
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.40 E-value=4.6e-12 Score=101.38 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=81.3
Q ss_pred CCCeEEEEcCccCHHHHHHHH--hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSR--VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~--~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
+|.+|||||||+|..++.+++ .+.+|++.|+++.+++.+++|+..+.. ..++.+...|+ ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~-~~~----------- 64 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDA-EFD----------- 64 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCC-HGG-----------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECcc-ccC-----------
Confidence 478999999999999999999 589999999999999999999966543 57899999888 210
Q ss_pred cccccccCccchhccCCeeEEEEec-ccc--C-cccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 198 SQERYSWNSSELKEVQRASVLLAAD-VIY--S-DDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaD-viY--~-~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
.....+||+|++.. +.. . .+....+++.+.++|+++ +.+++.
T Consensus 65 -----------~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg--G~lvi~ 110 (112)
T PF12847_consen 65 -----------PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPG--GRLVIN 110 (112)
T ss_dssp -----------TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE--EEEEEE
T ss_pred -----------cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCC--cEEEEE
Confidence 11235799999999 332 1 245677899999999774 556554
No 8
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.36 E-value=2.3e-11 Score=106.24 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=81.5
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
+.+|.+++ ...++++|||||||+|..++.++..+.+|+++|+++++++.+++|+..|+ .++.+...|
T Consensus 8 ~~~l~~~l-------~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d 74 (179)
T TIGR00537 8 SLLLEANL-------RELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNN------VGLDVVMTD 74 (179)
T ss_pred HHHHHHHH-------HhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC------CceEEEEcc
Confidence 35555554 23566799999999999999999988899999999999999999999876 246677777
Q ss_pred CCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcc---------------------cHHHHHHHHHHh
Q 020158 182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD---------------------LTDALFHTLKRL 240 (330)
Q Consensus 182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~---------------------~~~~l~~tl~~l 240 (330)
|.+.. ..+||+|+++..++... ..+.+++.+.++
T Consensus 75 ~~~~~-------------------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 129 (179)
T TIGR00537 75 LFKGV-------------------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEI 129 (179)
T ss_pred ccccc-------------------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHh
Confidence 65431 23799999887665322 146788889999
Q ss_pred ccCCC
Q 020158 241 MPLGS 245 (330)
Q Consensus 241 L~~~~ 245 (330)
|++++
T Consensus 130 Lk~gG 134 (179)
T TIGR00537 130 LKEGG 134 (179)
T ss_pred hCCCC
Confidence 98764
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.33 E-value=1.2e-11 Score=117.85 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=87.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
.++|.+|||+|||+|..++.+|+.+.+|+++|.++++++.++.++..+.. ..++.+...+-.+..
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l~----------- 193 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKLA----------- 193 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHhh-----------
Confidence 35788999999999999999999999999999999999999988776542 235666554432210
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeeeeC
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEKRY 257 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~R~ 257 (330)
...++||+|++.+|+++....+.+++.+.++|+++ +.++++...|.
T Consensus 194 ------------~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPG--G~liist~nr~ 239 (322)
T PLN02396 194 ------------DEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPN--GATVLSTINRT 239 (322)
T ss_pred ------------hccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCC--cEEEEEECCcC
Confidence 01358999999999999999999999999999876 45666654443
No 10
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.33 E-value=3.8e-12 Score=115.48 Aligned_cols=134 Identities=16% Similarity=0.261 Sum_probs=95.5
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEE-EEecCCCCCCCCccCCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV-RDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v-~~ldW~~~~~~~~~~~~~~ 196 (330)
.+.|++|||+|||+||++..+|+.|++|++.|.++++++.++.....+-.. ...+.. .++.=....
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~---~~~~~y~l~~~~~~~E---------- 153 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL---EGAIAYRLEYEDTDVE---------- 153 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh---ccccceeeehhhcchh----------
Confidence 356789999999999999999999999999999999999998875444321 122211 112111110
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeeeeCcccccc--------hhhhc
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEKRYNFSLND--------LDVVA 268 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~R~~f~~~~--------~d~v~ 268 (330)
...+.||.|+|++|+.+-.+...+++.+.++|+|+ +.++++...|.-.++.. +.+|-
T Consensus 154 -------------~~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~--G~lfittinrt~lS~~~~i~~~E~vl~ivp 218 (282)
T KOG1270|consen 154 -------------GLTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPN--GRLFITTINRTILSFAGTIFLAEIVLRIVP 218 (282)
T ss_pred -------------hcccccceeeeHHHHHHHhCHHHHHHHHHHHhCCC--CceEeeehhhhHHHhhccccHHHHHHHhcC
Confidence 02346999999999999999999999999999886 56778888886544321 23444
Q ss_pred cccchhhhhhh
Q 020158 269 NGYSHFRSYIM 279 (330)
Q Consensus 269 ~~y~~f~~~l~ 279 (330)
.|--++..++.
T Consensus 219 ~Gth~~ekfi~ 229 (282)
T KOG1270|consen 219 KGTHTWEKFIN 229 (282)
T ss_pred CCCcCHHHcCC
Confidence 44445555554
No 11
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.32 E-value=3.6e-11 Score=106.89 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=81.0
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
...+.+|||+|||+|..++.+|+.+.+|++.|+++.+++.+++++..++. .++.+...|+.+..
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~~----------- 91 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNNLT----------- 91 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhhCC-----------
Confidence 34678999999999999999999999999999999999999999987653 34666666654321
Q ss_pred cccccccCccchhccCCeeEEEEeccccCc--ccHHHHHHHHHHhccCCCC
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~--~~~~~l~~tl~~lL~~~~~ 246 (330)
....||+|+++.++|+. .....+++.+.++|++++.
T Consensus 92 -------------~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 92 -------------FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred -------------cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 12469999999998753 4678999999999988743
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.32 E-value=1.5e-11 Score=112.22 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=100.2
Q ss_pred cCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CeEEEEeCchHHHHHHHHHHHHccCCCCC
Q 020158 94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFSH 171 (330)
Q Consensus 94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~ 171 (330)
.|++.=-.|++|+.|.. ....++|||||||+|++|+++|++ . .+|++.++.+++.+++++|+++|..
T Consensus 25 ~~~~~~~DaiLL~~~~~-------~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l---- 93 (248)
T COG4123 25 CGFRYGTDAILLAAFAP-------VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL---- 93 (248)
T ss_pred CccccccHHHHHHhhcc-------cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc----
Confidence 57777779999999973 233789999999999999999998 4 7999999999999999999999986
Q ss_pred CCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcc------------------cHHHH
Q 020158 172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD------------------LTDAL 233 (330)
Q Consensus 172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~------------------~~~~l 233 (330)
..++++...|..+..... ...+||+|+|+-..|... .++.+
T Consensus 94 ~~ri~v~~~Di~~~~~~~---------------------~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~ 152 (248)
T COG4123 94 EERIQVIEADIKEFLKAL---------------------VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDL 152 (248)
T ss_pred hhceeEehhhHHHhhhcc---------------------cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHH
Confidence 688999999877653322 224799999999888743 47899
Q ss_pred HHHHHHhccCCC
Q 020158 234 FHTLKRLMPLGS 245 (330)
Q Consensus 234 ~~tl~~lL~~~~ 245 (330)
+++..++|+++|
T Consensus 153 i~~a~~~lk~~G 164 (248)
T COG4123 153 IRAAAKLLKPGG 164 (248)
T ss_pred HHHHHHHccCCC
Confidence 999999998764
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.30 E-value=6.5e-11 Score=100.52 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=87.1
Q ss_pred CCCeEEEEcCccCHHHHHHHH-h--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSR-V--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~-~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
++.+|||||||+|..++.++. . +.+|++.|+++.+++.++.+++.++. .++++...|+.+. +..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-----~ni~~~~~d~~~l-~~~------- 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-----DNIEFIQGDIEDL-PQE------- 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-----TTEEEEESBTTCG-CGC-------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-----cccceEEeehhcc-ccc-------
Confidence 468999999999999999994 4 67999999999999999999998873 5899999998873 210
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEee
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALE 254 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~ 254 (330)
+ ...||+|+++.++|+......+++.+.++|+++ +.+++...
T Consensus 70 ------------~--~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~--G~~i~~~~ 111 (152)
T PF13847_consen 70 ------------L--EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPG--GILIISDP 111 (152)
T ss_dssp ------------S--STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEE--EEEEEEEE
T ss_pred ------------c--CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCC--cEEEEEEC
Confidence 0 158999999999999999999999999999764 55555443
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=3.3e-11 Score=111.16 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
-++.+|||+|||+|..++.++..+.+|+++|+++++++.+++++..++. ..++.+...+..+..+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~---------- 108 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQH---------- 108 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhh----------
Confidence 3567999999999999999999999999999999999999999987653 34677776665442110
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
..+.||+|++..++++......+++.+.++|++++
T Consensus 109 ------------~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG 143 (255)
T PRK11036 109 ------------LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGG 143 (255)
T ss_pred ------------cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCe
Confidence 13579999999999998888999999999998864
No 15
>PRK14968 putative methyltransferase; Provisional
Probab=99.25 E-value=2e-10 Score=100.23 Aligned_cols=116 Identities=20% Similarity=0.317 Sum_probs=86.9
Q ss_pred EeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeE
Q 020158 97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (330)
Q Consensus 97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~ 176 (330)
..|+.+.+|++++.. .++++|||+|||+|..++.++..+.+|+++|+++++++.+++|+..|... ...+.
T Consensus 7 ~p~~~~~~l~~~~~~-------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~ 76 (188)
T PRK14968 7 EPAEDSFLLAENAVD-------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR---NNGVE 76 (188)
T ss_pred CcchhHHHHHHhhhc-------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC---CcceE
Confidence 346667777777632 46789999999999999999998999999999999999999999887642 11266
Q ss_pred EEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC---------------------cccHHHHHH
Q 020158 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS---------------------DDLTDALFH 235 (330)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~---------------------~~~~~~l~~ 235 (330)
+...|+.+.. ....||+|+++..++. ...++.+++
T Consensus 77 ~~~~d~~~~~------------------------~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 132 (188)
T PRK14968 77 VIRSDLFEPF------------------------RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLD 132 (188)
T ss_pred EEeccccccc------------------------cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHH
Confidence 6666665431 1127999998765543 123567889
Q ss_pred HHHHhccCCCC
Q 020158 236 TLKRLMPLGSK 246 (330)
Q Consensus 236 tl~~lL~~~~~ 246 (330)
.+.++|++++.
T Consensus 133 ~~~~~Lk~gG~ 143 (188)
T PRK14968 133 EVGRYLKPGGR 143 (188)
T ss_pred HHHHhcCCCeE
Confidence 99999987643
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.23 E-value=1.6e-10 Score=102.58 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
.++.+|||+|||+|..++.+|+.+.+|+++|+++.+++.+++++..++. ++.+...|.....
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~------------ 90 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINAAA------------ 90 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchhcc------------
Confidence 4567999999999999999999999999999999999999999877652 2444444432210
Q ss_pred ccccccCccchhccCCeeEEEEeccccCc--ccHHHHHHHHHHhccCCCC
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~--~~~~~l~~tl~~lL~~~~~ 246 (330)
...+||+|+++.++++. .....+++.+.++|++++.
T Consensus 91 ------------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 91 ------------LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred ------------ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcE
Confidence 12479999999998754 4678899999999988643
No 17
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.23 E-value=1.1e-10 Score=109.72 Aligned_cols=129 Identities=17% Similarity=0.253 Sum_probs=87.0
Q ss_pred eeEEEecccccCCCCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHH
Q 020158 79 FNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDN 157 (330)
Q Consensus 79 ~~i~i~~~~~t~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~ 157 (330)
..|.|.-+++ .+ ||. -+...+-.++|.+. ..+|++|||+|||+|++||+++++| ++|+++|++|.+++.
T Consensus 130 ~~I~idPg~A--FG-TG~--H~TT~lcl~~l~~~-----~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~ 199 (295)
T PF06325_consen 130 IVIEIDPGMA--FG-TGH--HPTTRLCLELLEKY-----VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEA 199 (295)
T ss_dssp EEEEESTTSS--S--SSH--CHHHHHHHHHHHHH-----SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHH
T ss_pred EEEEECCCCc--cc-CCC--CHHHHHHHHHHHHh-----ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHH
Confidence 4566666665 22 232 23555556666554 3678999999999999999999997 489999999999999
Q ss_pred HHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHH
Q 020158 158 CAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTL 237 (330)
Q Consensus 158 ~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl 237 (330)
++.|+.+|+. ..++.+. .... . ...+||+|+|+ ++ ...+-.++..+
T Consensus 200 a~~N~~~N~~----~~~~~v~---~~~~-----------------------~-~~~~~dlvvAN-I~--~~vL~~l~~~~ 245 (295)
T PF06325_consen 200 ARENAELNGV----EDRIEVS---LSED-----------------------L-VEGKFDLVVAN-IL--ADVLLELAPDI 245 (295)
T ss_dssp HHHHHHHTT-----TTCEEES---CTSC-----------------------T-CCS-EEEEEEE-S---HHHHHHHHHHC
T ss_pred HHHHHHHcCC----CeeEEEE---Eecc-----------------------c-ccccCCEEEEC-CC--HHHHHHHHHHH
Confidence 9999999986 3455442 1111 0 12689999976 22 22445677778
Q ss_pred HHhccCCCCeEEEEEe
Q 020158 238 KRLMPLGSKKVLYLAL 253 (330)
Q Consensus 238 ~~lL~~~~~~~i~va~ 253 (330)
.++|+++ +.+++|-
T Consensus 246 ~~~l~~~--G~lIlSG 259 (295)
T PF06325_consen 246 ASLLKPG--GYLILSG 259 (295)
T ss_dssp HHHEEEE--EEEEEEE
T ss_pred HHhhCCC--CEEEEcc
Confidence 8888664 6666664
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=99.19 E-value=5e-10 Score=107.72 Aligned_cols=100 Identities=12% Similarity=0.001 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
.++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++++..++. ..++.+...|..+..-
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~~~~~~---------- 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADALNQPF---------- 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCcccCCC----------
Confidence 46789999999999999999886 78999999999999999999988763 3567887777654310
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
..+.||+|++.+++++......+++.+.++|++|+
T Consensus 183 -------------~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG 217 (340)
T PLN02244 183 -------------EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGG 217 (340)
T ss_pred -------------CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCc
Confidence 12579999999999998888999999999998864
No 19
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.19 E-value=1.5e-10 Score=88.96 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=72.8
Q ss_pred EEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccc
Q 020158 125 LELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYS 203 (330)
Q Consensus 125 LELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~ 203 (330)
||+|||+|..+..+++. +.+|+++|.++.+++.++++...+ .+.+...|..+..-
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~---------------- 56 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--------GVSFRQGDAEDLPF---------------- 56 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--------TEEEEESBTTSSSS----------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--------CchheeehHHhCcc----------------
Confidence 89999999999999999 899999999999999999877543 34477777655411
Q ss_pred cCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 204 WNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 204 w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
..+.||+|++..++++......+++.+.++|++++
T Consensus 57 -------~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG 91 (95)
T PF08241_consen 57 -------PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGG 91 (95)
T ss_dssp --------TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEE
T ss_pred -------ccccccccccccceeeccCHHHHHHHHHHHcCcCe
Confidence 23689999999999999999999999999998763
No 20
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.19 E-value=5.3e-10 Score=106.26 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
..++.+|||+|||+|..++.+++.|.+|+++|+++.|++.+++|+...........++.+...|+...
T Consensus 142 ~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------------ 209 (315)
T PLN02585 142 SLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------------ 209 (315)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------------
Confidence 35788999999999999999999999999999999999999999875421100013455555554321
Q ss_pred cccccccCccchhccCCeeEEEEeccccCccc--HHHHHHHHHHh
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRL 240 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~--~~~l~~tl~~l 240 (330)
.+.||+|++.+++++... ...+++.+.++
T Consensus 210 --------------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l 240 (315)
T PLN02585 210 --------------SGKYDTVTCLDVLIHYPQDKADGMIAHLASL 240 (315)
T ss_pred --------------CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh
Confidence 247999999999876432 33455555543
No 21
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.17 E-value=6.1e-10 Score=98.31 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=75.0
Q ss_pred CCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
+.+|||+|||+|..++.+|+. +.+|+++|.++++++.+++|++.|+. .++++...+..+..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l-----~~i~~~~~d~~~~~------------ 108 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL-----KNVTVVHGRAEEFG------------ 108 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC-----CCEEEEeccHhhCC------------
Confidence 889999999999999999874 57999999999999999999999873 34777777754421
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
..++||+|++.. ....+.+++.+.++|++++
T Consensus 109 ------------~~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG 139 (187)
T PRK00107 109 ------------QEEKFDVVTSRA----VASLSDLVELCLPLLKPGG 139 (187)
T ss_pred ------------CCCCccEEEEcc----ccCHHHHHHHHHHhcCCCe
Confidence 124799999864 2457889999999998764
No 22
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.16 E-value=5e-10 Score=98.33 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
+++++|||+|||+|..++.+|..+ .+|++.|.++.+++.+++|++.++. .++++...|+.+..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~~---------- 105 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDFQ---------- 105 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhcc----------
Confidence 468999999999999999988763 6899999999999999999988762 45888888765521
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
...+||+|++.- + ...+.+++.+.++|++++
T Consensus 106 --------------~~~~fD~I~s~~-~---~~~~~~~~~~~~~LkpgG 136 (181)
T TIGR00138 106 --------------HEEQFDVITSRA-L---ASLNVLLELTLNLLKVGG 136 (181)
T ss_pred --------------ccCCccEEEehh-h---hCHHHHHHHHHHhcCCCC
Confidence 125799998753 2 346678888999998764
No 23
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=6.7e-10 Score=103.93 Aligned_cols=132 Identities=19% Similarity=0.206 Sum_probs=87.9
Q ss_pred eeEEEecccccCCCCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-eEEEEeCchHHHHH
Q 020158 79 FNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDN 157 (330)
Q Consensus 79 ~~i~i~~~~~t~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~-~V~~TD~~~~~L~~ 157 (330)
..|.|.-+++-+ ||+. +...+-.++|... ..+|++|||+|||+|++||+++++|+ +|+++|++|.+++.
T Consensus 131 ~~i~lDPGlAFG---TG~H--pTT~lcL~~Le~~-----~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a 200 (300)
T COG2264 131 LNIELDPGLAFG---TGTH--PTTSLCLEALEKL-----LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA 200 (300)
T ss_pred eEEEEccccccC---CCCC--hhHHHHHHHHHHh-----hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH
Confidence 445666666532 3332 2333334444433 35899999999999999999999975 69999999999999
Q ss_pred HHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHH
Q 020158 158 CAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTL 237 (330)
Q Consensus 158 ~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl 237 (330)
++.|+.+|+.. ..+. ..+.... ......+||+|+|+ + -.+.+..|..-+
T Consensus 201 a~eNa~~N~v~----~~~~---~~~~~~~---------------------~~~~~~~~DvIVAN-I--LA~vl~~La~~~ 249 (300)
T COG2264 201 ARENARLNGVE----LLVQ---AKGFLLL---------------------EVPENGPFDVIVAN-I--LAEVLVELAPDI 249 (300)
T ss_pred HHHHHHHcCCc----hhhh---cccccch---------------------hhcccCcccEEEeh-h--hHHHHHHHHHHH
Confidence 99999999852 1111 1111110 11123589999986 2 133455788888
Q ss_pred HHhccCCCCeEEEEEe
Q 020158 238 KRLMPLGSKKVLYLAL 253 (330)
Q Consensus 238 ~~lL~~~~~~~i~va~ 253 (330)
.++++++ +.+++|-
T Consensus 250 ~~~lkpg--g~lIlSG 263 (300)
T COG2264 250 KRLLKPG--GRLILSG 263 (300)
T ss_pred HHHcCCC--ceEEEEe
Confidence 8899774 5566653
No 24
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.15 E-value=4.3e-10 Score=106.79 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=84.0
Q ss_pred eechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeE
Q 020158 98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (330)
Q Consensus 98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~ 176 (330)
-|.+.+....++.+- ..++|++|||+|||+|...+.++..+ ..|++.|.++.|+..++..-..-.. ..++.
T Consensus 103 e~~s~~~~~~~l~~l----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~ 174 (314)
T TIGR00452 103 EWRSDIKWDRVLPHL----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN----DKRAI 174 (314)
T ss_pred HHHHHHHHHHHHHhc----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc----CCCeE
Confidence 466665555544332 46789999999999999988888876 4799999999888654322221110 24566
Q ss_pred EEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
+..++..+.. ....||+|++..++|+......+++.+.+.|++||.
T Consensus 175 ~~~~~ie~lp------------------------~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~ 220 (314)
T TIGR00452 175 LEPLGIEQLH------------------------ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGE 220 (314)
T ss_pred EEECCHHHCC------------------------CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCE
Confidence 6665544321 124799999999999999999999999999988743
No 25
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.15 E-value=1.6e-11 Score=109.24 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=104.3
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec-CCCCCCCCccCCCCCccc
Q 020158 121 GIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN-WMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld-W~~~~~~~~~~~~~~~~~ 199 (330)
-+++|||||||||.|..+-.++.++++.|+|..||+.+...=.... ..+.++. +...
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~--------L~~Aea~~Fl~~-------------- 183 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDT--------LYVAEAVLFLED-------------- 183 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHH--------HHHHHHHHHhhh--------------
Confidence 3689999999999999999999999999999999988765432211 1111111 2221
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeeeeCc---ccccchhhhccccchhhh
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEKRYN---FSLNDLDVVANGYSHFRS 276 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~R~~---f~~~~~d~v~~~y~~f~~ 276 (330)
....+||+|.|+||+-+...++.++.....+|+++ +.+.+|.+.-.. |.+.. ..-|.|-++
T Consensus 184 ----------~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g--GlfaFSvE~l~~~~~f~l~p----s~RyAH~~~ 247 (287)
T COG4976 184 ----------LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPG--GLFAFSVETLPDDGGFVLGP----SQRYAHSES 247 (287)
T ss_pred ----------ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCC--ceEEEEecccCCCCCeecch----hhhhccchH
Confidence 12358999999999999999999999999999775 455555443211 21111 234899999
Q ss_pred hhhhhhcccccccccCCCeeeEEecCCCcCcccccccCCCceEEEEE
Q 020158 277 YIMEEGEHRRFERESFPAFVGKCIDLNEFPQYVREYDRGNDVELWQI 323 (330)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~f~v~~i~~~~~p~~~~~yer~~~l~lw~i 323 (330)
|+++... ..||.+-.+....+ +-++++.+-.--+
T Consensus 248 YVr~~l~--------~~Gl~~i~~~~tti-----R~d~g~pv~G~L~ 281 (287)
T COG4976 248 YVRALLA--------ASGLEVIAIEDTTI-----RRDAGEPVPGILV 281 (287)
T ss_pred HHHHHHH--------hcCceEEEeecccc-----hhhcCCCCCCceE
Confidence 9987653 45777777665544 4456665554333
No 26
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.15 E-value=4.6e-10 Score=105.48 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
.++.+|||+|||+|..++.+|+.|.+|+++|+++.+++.+++|+..++. ++.+...|.....
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~------------ 180 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSAS------------ 180 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhccc------------
Confidence 4567999999999999999999999999999999999999999988752 4555555543321
Q ss_pred ccccccCccchhccCCeeEEEEeccccCc--ccHHHHHHHHHHhccCCCC
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~--~~~~~l~~tl~~lL~~~~~ 246 (330)
..++||+|++..++++. +....+++.+.++|++++.
T Consensus 181 ------------~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 181 ------------IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred ------------ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 12579999999998753 4778899999999988643
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.15 E-value=6.5e-10 Score=106.18 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=84.6
Q ss_pred eechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeE
Q 020158 98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (330)
Q Consensus 98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~ 176 (330)
-|++.+.... +..+. ..++|++|||+|||+|..++.++..+ ..|++.|.++.++...+........ ..++.
T Consensus 104 ew~s~~k~~~-l~~~l---~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i~ 175 (322)
T PRK15068 104 EWRSDWKWDR-VLPHL---SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN----DQRAH 175 (322)
T ss_pred eehHHhHHHH-HHHhh---CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC----CCCeE
Confidence 5765554333 33332 45789999999999999999999886 4799999998877544332222111 24677
Q ss_pred EEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
+...+..+.. ....||+|++..++|+......+++.+.+.|++|+.
T Consensus 176 ~~~~d~e~lp------------------------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~ 221 (322)
T PRK15068 176 LLPLGIEQLP------------------------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGE 221 (322)
T ss_pred EEeCCHHHCC------------------------CcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcE
Confidence 7777665431 135799999999999999999999999999987643
No 28
>PRK14967 putative methyltransferase; Provisional
Probab=99.13 E-value=1.2e-09 Score=98.77 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=82.3
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~-~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (330)
.+.+|++++... ...++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..|+ .++.+..
T Consensus 21 ds~~l~~~l~~~----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~ 90 (223)
T PRK14967 21 DTQLLADALAAE----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG------VDVDVRR 90 (223)
T ss_pred cHHHHHHHHHhc----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEE
Confidence 456777777543 334578999999999999999998764 99999999999999999999876 2466676
Q ss_pred ecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcc---------------------cHHHHHHHHH
Q 020158 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD---------------------LTDALFHTLK 238 (330)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~---------------------~~~~l~~tl~ 238 (330)
.|+.+.. ...+||+|+++-..+... .++.+++.+.
T Consensus 91 ~d~~~~~------------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 146 (223)
T PRK14967 91 GDWARAV------------------------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAP 146 (223)
T ss_pred Cchhhhc------------------------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHH
Confidence 6765421 124799999864332211 2456778888
Q ss_pred HhccCCCC
Q 020158 239 RLMPLGSK 246 (330)
Q Consensus 239 ~lL~~~~~ 246 (330)
++|++++.
T Consensus 147 ~~Lk~gG~ 154 (223)
T PRK14967 147 ALLAPGGS 154 (223)
T ss_pred HhcCCCcE
Confidence 99987643
No 29
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.13 E-value=1e-09 Score=106.65 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=76.2
Q ss_pred CCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
+.+|||||||+|.+|+.+++. ..+|+++|.++.+++.++.|++.|.... ..++.+..-|....
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~~D~l~~------------- 293 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALSG------------- 293 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc--CceEEEEEcccccc-------------
Confidence 459999999999999999987 4799999999999999999999996311 12455554443221
Q ss_pred ccccccCccchhccCCeeEEEEeccccCc-----ccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSD-----DLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~-----~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
+ ...+||+|+++-.++.. .....+++...++|+++| .+++.
T Consensus 294 ----------~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG--~L~iV 339 (378)
T PRK15001 294 ----------V-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING--ELYIV 339 (378)
T ss_pred ----------C-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC--EEEEE
Confidence 0 12479999997666542 245678888999998764 44443
No 30
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.13 E-value=4.3e-10 Score=95.16 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
..++++|||+|||+|..+..++..+.+|+++|+++.+++. .+. .........+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~~------~~~~~~~~~~~-------------- 73 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RNV------VFDNFDAQDPP-------------- 73 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TTS------EEEEEECHTHH--------------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hhh------hhhhhhhhhhh--------------
Confidence 5678999999999999999999999999999999998887 111 11111111111
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeeeeC
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEKRY 257 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~R~ 257 (330)
...++||+|++.+++++......+++.+.++|+++ +.++++...+.
T Consensus 74 ------------~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lkpg--G~l~~~~~~~~ 119 (161)
T PF13489_consen 74 ------------FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPG--GYLVISDPNRD 119 (161)
T ss_dssp ------------CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEE--EEEEEEEEBTT
T ss_pred ------------ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCC--CEEEEEEcCCc
Confidence 12368999999999999999999999999999875 66777766553
No 31
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.12 E-value=3.5e-10 Score=99.33 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=72.5
Q ss_pred CeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccc
Q 020158 122 IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER 201 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~ 201 (330)
.++||+|||.|..+..+|.++.+++++|+++.+++.+++.+.. ..+|.+...+....++
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P-------------- 103 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWP-------------- 103 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT-----------------
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCC--------------
Confidence 5899999999999999999999999999999999999988753 3678888888765432
Q ss_pred cccCccchhccCCeeEEEEeccccCcccH---HHHHHHHHHhccCCCCeEEEEEe
Q 020158 202 YSWNSSELKEVQRASVLLAADVIYSDDLT---DALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 202 ~~w~~~~~~~~~~~DlIlaaDviY~~~~~---~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
.++||+|+.++|+|+-... ..+++.+...|+++ +.++++.
T Consensus 104 ----------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pg--G~LV~g~ 146 (201)
T PF05401_consen 104 ----------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPG--GHLVFGH 146 (201)
T ss_dssp ----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEE--EEEEEEE
T ss_pred ----------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCC--CEEEEEE
Confidence 3589999999999997654 45666666777654 5566654
No 32
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=3.7e-11 Score=110.57 Aligned_cols=164 Identities=24% Similarity=0.302 Sum_probs=106.0
Q ss_pred ccCCCCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHH-HHHHHHc
Q 020158 88 TSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNC-AKNVQLN 165 (330)
Q Consensus 88 ~t~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~-~~Nv~~N 165 (330)
.+.....|+++|.+|..|..++....-..-.+.||+|||||||+|+.++.+...+ ..|.++|++.++++.. -.|+..|
T Consensus 84 ~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~ 163 (282)
T KOG2920|consen 84 VPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVN 163 (282)
T ss_pred CCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecc
Confidence 4556788999999999999999865211245789999999999999999999997 8999999998888433 2444444
Q ss_pred cCCCCCCCeeEEEEecCCCCCCCCccCCCCCcccc-ccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 166 SGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE-RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 166 ~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
...- + -|.+...... -..+ ..+|.-. .....+||+|+++..+|.......+. .+.+..-+.
T Consensus 164 ~~~~-----~-----~~~e~~~~~~------i~~s~l~dg~~~-~t~~~~ydlIlsSetiy~~~~~~~~~-~~~r~~l~~ 225 (282)
T KOG2920|consen 164 SHAG-----V-----EEKENHKVDE------ILNSLLSDGVFN-HTERTHYDLILSSETIYSIDSLAVLY-LLHRPCLLK 225 (282)
T ss_pred hhhh-----h-----hhhhccccee------ccccccccchhh-hccccchhhhhhhhhhhCcchhhhhH-hhhhhhcCC
Confidence 3211 0 0111100000 0000 0012000 00113899999999999999888884 333333335
Q ss_pred CCeEEEEEeeeeCcccccchhhhccccchhhh
Q 020158 245 SKKVLYLALEKRYNFSLNDLDVVANGYSHFRS 276 (330)
Q Consensus 245 ~~~~i~va~~~R~~f~~~~~d~v~~~y~~f~~ 276 (330)
.++++|+|.++-|. . |..+..+|++
T Consensus 226 ~D~~~~~aAK~~yF-g------Vgg~i~~f~~ 250 (282)
T KOG2920|consen 226 TDGVFYVAAKKLYF-G------VGGGIEEFNS 250 (282)
T ss_pred ccchhhhhhHhhcc-C------cCcchhhhcc
Confidence 57888888766553 3 5566788863
No 33
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.11 E-value=8.7e-09 Score=90.56 Aligned_cols=98 Identities=16% Similarity=0.054 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.++.+|||+|||+|..++.+++.+ .+|++.|.++.+++.+++|+..++. .++.+...+....
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~~~~~d~~~~----------- 93 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-----GNIDIIPGEAPIE----------- 93 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeEEEecCchhh-----------
Confidence 467899999999999999999874 6999999999999999999988763 3466655443211
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
...+||+|+++... ..+..+++.+.++|+++ +.+++
T Consensus 94 --------------~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~g--G~lv~ 129 (187)
T PRK08287 94 --------------LPGKADAIFIGGSG---GNLTAIIDWSLAHLHPG--GRLVL 129 (187)
T ss_pred --------------cCcCCCEEEECCCc---cCHHHHHHHHHHhcCCC--eEEEE
Confidence 12479999986543 34677889999999775 44444
No 34
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.11 E-value=2.5e-09 Score=100.64 Aligned_cols=117 Identities=19% Similarity=0.293 Sum_probs=81.6
Q ss_pred eechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeE
Q 020158 98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (330)
Q Consensus 98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~ 176 (330)
..+...+..+++... ..++++|||+|||+|..++.+++.+ .+|+++|+++.+++.+++|+..|+. ...+.
T Consensus 142 ~h~tt~l~l~~l~~~-----~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~----~~~~~ 212 (288)
T TIGR00406 142 THPTTSLCLEWLEDL-----DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV----SDRLQ 212 (288)
T ss_pred CCHHHHHHHHHHHhh-----cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC----CcceE
Confidence 334555544555432 2467999999999999999999886 5899999999999999999999874 23344
Q ss_pred EEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
+...+-... ...+||+|++.- + ...+..++..+.++|+++ +.++++.
T Consensus 213 ~~~~~~~~~-------------------------~~~~fDlVvan~-~--~~~l~~ll~~~~~~Lkpg--G~li~sg 259 (288)
T TIGR00406 213 VKLIYLEQP-------------------------IEGKADVIVANI-L--AEVIKELYPQFSRLVKPG--GWLILSG 259 (288)
T ss_pred EEecccccc-------------------------cCCCceEEEEec-C--HHHHHHHHHHHHHHcCCC--cEEEEEe
Confidence 443321100 124799999853 2 234567888899999775 4566643
No 35
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.10 E-value=2.3e-09 Score=98.73 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=86.0
Q ss_pred eeEEEecccccCCCCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-eEEEEeCchHHHHH
Q 020158 79 FNVTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDN 157 (330)
Q Consensus 79 ~~i~i~~~~~t~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~-~V~~TD~~~~~L~~ 157 (330)
..+.|..+++. .+|. .+.+..+.+++... ..++++|||+|||+|..++.+++.+. +|+++|+++.+++.
T Consensus 88 ~~i~i~p~~af---gtg~--h~tt~~~l~~l~~~-----~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~ 157 (250)
T PRK00517 88 INIELDPGMAF---GTGT--HPTTRLCLEALEKL-----VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEA 157 (250)
T ss_pred EEEEECCCCcc---CCCC--CHHHHHHHHHHHhh-----cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 45556655542 2333 66666766776543 24789999999999999999888865 59999999999999
Q ss_pred HHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHH
Q 020158 158 CAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTL 237 (330)
Q Consensus 158 ~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl 237 (330)
+++|+..|+. ...+.+... ..+||+|+++= . ...+..++..+
T Consensus 158 A~~n~~~~~~----~~~~~~~~~-------------------------------~~~fD~Vvani-~--~~~~~~l~~~~ 199 (250)
T PRK00517 158 ARENAELNGV----ELNVYLPQG-------------------------------DLKADVIVANI-L--ANPLLELAPDL 199 (250)
T ss_pred HHHHHHHcCC----CceEEEccC-------------------------------CCCcCEEEEcC-c--HHHHHHHHHHH
Confidence 9999999873 122221100 01699999752 1 33456788889
Q ss_pred HHhccCCCCeEEEEE
Q 020158 238 KRLMPLGSKKVLYLA 252 (330)
Q Consensus 238 ~~lL~~~~~~~i~va 252 (330)
.++|+++ +.++++
T Consensus 200 ~~~Lkpg--G~lils 212 (250)
T PRK00517 200 ARLLKPG--GRLILS 212 (250)
T ss_pred HHhcCCC--cEEEEE
Confidence 9999775 455554
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.08 E-value=4.1e-11 Score=94.11 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=60.5
Q ss_pred EEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcccccc
Q 020158 125 LELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERY 202 (330)
Q Consensus 125 LELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~ 202 (330)
||+|||+|.....++.. ..+++++|+++.|++.+++++..+.. .......++-.+....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------- 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-----DNFERLRFDVLDLFDY-------------- 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---C--------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----cceeEEEeecCChhhc--------------
Confidence 79999999988888877 78999999999999888888777542 2222222221111000
Q ss_pred ccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 203 SWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 203 ~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
...++||+|+++.|+++......+++.+.++|++|+
T Consensus 62 -------~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 62 -------DPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp -------CC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-
T ss_pred -------ccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCC
Confidence 011489999999999999999999999999998874
No 37
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.07 E-value=1.8e-09 Score=98.47 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=80.7
Q ss_pred eEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CeEEEEeCchHHHHHHHHHHHHccCCCCCC
Q 020158 96 LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQ 172 (330)
Q Consensus 96 ~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~ 172 (330)
.+.|+. .+++.+ ...+|.+|||+|||||..++.+++. + .+|+++|+++.||+.+++++.... .
T Consensus 32 ~~~wr~--~~~~~~-------~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~ 97 (233)
T PF01209_consen 32 DRRWRR--KLIKLL-------GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----L 97 (233)
T ss_dssp -----S--HHHHHH-------T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------
T ss_pred HHHHHH--HHHhcc-------CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----C
Confidence 568988 444443 2356789999999999999998876 3 589999999999999999998765 2
Q ss_pred CeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 173 GSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 173 ~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
.++++...|-.+..- ..+.||+|+++=.+.+....+..++.+.++|+||+. .+++.
T Consensus 98 ~~i~~v~~da~~lp~-----------------------~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~-l~ile 153 (233)
T PF01209_consen 98 QNIEFVQGDAEDLPF-----------------------PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGR-LVILE 153 (233)
T ss_dssp -SEEEEE-BTTB--S------------------------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEE-EEEEE
T ss_pred CCeeEEEcCHHHhcC-----------------------CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeE-EEEee
Confidence 478887777554311 236899999999999988899999999999998754 33343
Q ss_pred eee
Q 020158 253 LEK 255 (330)
Q Consensus 253 ~~~ 255 (330)
..+
T Consensus 154 ~~~ 156 (233)
T PF01209_consen 154 FSK 156 (233)
T ss_dssp EEB
T ss_pred ccC
Confidence 333
No 38
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=2.7e-09 Score=99.09 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=96.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (330)
|...-.+.+++.. .+-.|++|||+|||-|.+++.+|+. +.+|+++++|++.++.+++.+..-+. ..+++++-
T Consensus 56 AQ~~k~~~~~~kl---~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~l 128 (283)
T COG2230 56 AQRAKLDLILEKL---GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVRL 128 (283)
T ss_pred HHHHHHHHHHHhc---CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEEe
Confidence 4444445666653 6678999999999999999999998 89999999999999999999988764 46899999
Q ss_pred ecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCccc--HHHHHHHHHHhccCCCCe
Q 020158 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKK 247 (330)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~--~~~l~~tl~~lL~~~~~~ 247 (330)
.||.+.+ ++||-|++.+.+.+... .+.+++.+.++|+++|..
T Consensus 129 ~d~rd~~--------------------------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 129 QDYRDFE--------------------------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred ccccccc--------------------------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 9999862 35999999999998665 999999999999887543
No 39
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.07 E-value=2.4e-09 Score=98.37 Aligned_cols=98 Identities=13% Similarity=0.031 Sum_probs=75.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
++.+|||+|||+|..+..++..+.+|+++|+++.+++.++.+... ..+...|+....
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~----------~~~~~~d~~~~~------------- 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA----------DHYLAGDIESLP------------- 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC----------CCEEEcCcccCc-------------
Confidence 567999999999999988888889999999999999998877421 123334433310
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
. ...+||+|+++.++.+......+++.+.++|+++ +.++++
T Consensus 99 ---------~-~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g--G~l~~~ 139 (251)
T PRK10258 99 ---------L-ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPG--GVVAFT 139 (251)
T ss_pred ---------C-CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCC--eEEEEE
Confidence 0 1247999999999998888999999999999876 455554
No 40
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.07 E-value=2.2e-09 Score=98.88 Aligned_cols=98 Identities=19% Similarity=0.147 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.++.+|||||||+|..+..++.. +.+|+++|+++.+++.+++++ .++.+...|-....
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~~---------- 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASWQ---------- 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhccC----------
Confidence 46789999999999999888876 579999999999999998764 12334433322110
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
...+||+|+++.++++......+++.+.++|++++ .+++.
T Consensus 90 --------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG--~~~~~ 129 (258)
T PRK01683 90 --------------PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGG--VLAVQ 129 (258)
T ss_pred --------------CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCc--EEEEE
Confidence 12479999999999888888999999999998764 44443
No 41
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.6e-09 Score=99.54 Aligned_cols=109 Identities=18% Similarity=0.350 Sum_probs=80.1
Q ss_pred HHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 107 DFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 107 ~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
+.|+++. +....+ +|||||||.|.+|+.+|+.. .+|+++|.+..+++.+++|+..|.. .+..+..-+-..
T Consensus 148 ~lLl~~l--~~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~-----~~~~v~~s~~~~ 219 (300)
T COG2813 148 RLLLETL--PPDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV-----ENTEVWASNLYE 219 (300)
T ss_pred HHHHHhC--CccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC-----CccEEEEecccc
Confidence 3444443 344455 99999999999999999995 6999999999999999999999984 222333322222
Q ss_pred CCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcc-----cHHHHHHHHHHhccCCCCeE
Q 020158 185 PWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLGSKKV 248 (330)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~-----~~~~l~~tl~~lL~~~~~~~ 248 (330)
. + .++||+||++-.++.-. ....+++...+.|++|+...
T Consensus 220 ~-----------------------v--~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 220 P-----------------------V--EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred c-----------------------c--cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 1 1 23899999999998743 33478899999998875533
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.06 E-value=3e-09 Score=96.51 Aligned_cols=116 Identities=10% Similarity=0.140 Sum_probs=89.3
Q ss_pred HHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+|+.... ...++++|||||||+|..+..+++.+.+|+++|.++.+++.++.|+..+. ..+.+...++...
T Consensus 37 ~~~l~~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~ 107 (233)
T PRK05134 37 LNYIREHA---GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEEL 107 (233)
T ss_pred HHHHHHhc---cCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHh
Confidence 45665553 34678999999999999999999888899999999999999999987754 2345555555432
Q ss_pred CCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEee
Q 020158 186 WPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALE 254 (330)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~ 254 (330)
.. ...++||+|+++.++.+......+++.+.++|+++ +.++++..
T Consensus 108 ~~----------------------~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~g--G~l~v~~~ 152 (233)
T PRK05134 108 AA----------------------EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPG--GLVFFSTL 152 (233)
T ss_pred hh----------------------hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCC--cEEEEEec
Confidence 10 01258999999999999888999999999999776 44555543
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.05 E-value=3e-09 Score=106.64 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 119 FNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
-++.+|||+|||+|..++.++.. +.+|+++|+++.+++.+++|.... ..++.+...|+.....
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~~---------- 328 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKTY---------- 328 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCCC----------
Confidence 35789999999999999888875 779999999999999999887522 3467888888765411
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
...+||+|++.+++++....+.+++.+.++|+++ +.+++..
T Consensus 329 -------------~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg--G~l~i~~ 369 (475)
T PLN02336 329 -------------PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPG--GKVLISD 369 (475)
T ss_pred -------------CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCC--eEEEEEE
Confidence 1247999999999999999999999999999876 4455543
No 44
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.05 E-value=6.1e-10 Score=89.78 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=78.9
Q ss_pred CCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 121 GIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
|.+|||+|||+|...+.+++.+ .++++.|+++..++.++.|+..+.. ..++.+...|+.+..+.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~----------- 65 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEP----------- 65 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHT-----------
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhh-----------
Confidence 5689999999999999999998 9999999999999999999999874 36788888887653100
Q ss_pred cccccCccchhccCCeeEEEEeccccCc--------ccHHHHHHHHHHhccCCC
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSD--------DLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~--------~~~~~l~~tl~~lL~~~~ 245 (330)
....+||+|+++-..... .....+++.+.++|++++
T Consensus 66 ----------~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG 109 (117)
T PF13659_consen 66 ----------LPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGG 109 (117)
T ss_dssp ----------CTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEE
T ss_pred ----------ccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCe
Confidence 123689999998777642 256788999999998763
No 45
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.05 E-value=3e-09 Score=98.83 Aligned_cols=113 Identities=9% Similarity=0.070 Sum_probs=83.3
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (330)
+++--+..++... ..-++.+|||+|||+|..+..++.. +.+|+++|+++.+++.++.+... ..++.+..
T Consensus 36 gg~~~~~~~l~~l---~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~ 105 (263)
T PTZ00098 36 GGIEATTKILSDI---ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEA 105 (263)
T ss_pred CchHHHHHHHHhC---CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-------CCceEEEE
Confidence 3333344444442 4456789999999999988888764 67999999999999999987643 24577777
Q ss_pred ecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcc--cHHHHHHHHHHhccCCCC
Q 020158 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~--~~~~l~~tl~~lL~~~~~ 246 (330)
.|..+.. . ...+||+|++.+++++.. ....+++.+.++|++++.
T Consensus 106 ~D~~~~~----------------------~-~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~ 151 (263)
T PTZ00098 106 NDILKKD----------------------F-PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGI 151 (263)
T ss_pred CCcccCC----------------------C-CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcE
Confidence 7655321 0 125799999999987753 778999999999988643
No 46
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.05 E-value=2.4e-09 Score=96.45 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=75.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
..++.+|||+|||+|..+..++..+.+|+++|+++.++..+++++..+.. ..++.+...|+...
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~------------ 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLSL------------ 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhhC------------
Confidence 46789999999999999999998888999999999999999999977653 24577777665543
Q ss_pred cccccccCccchhccCCeeEEEEeccccCc--ccHHHHHHHHHHhcc
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMP 242 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~--~~~~~l~~tl~~lL~ 242 (330)
..+||+|++++++++. .....+++.+.++++
T Consensus 117 --------------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~ 149 (219)
T TIGR02021 117 --------------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTK 149 (219)
T ss_pred --------------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhC
Confidence 1479999999998764 335566666766663
No 47
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.05 E-value=2e-09 Score=103.59 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=73.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 121 GIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
..+|||||||+|..++.+++.. .+|+++|+++.+++.++.|+..|+. ...+...|....
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~------------- 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSD------------- 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEcccccc-------------
Confidence 3479999999999999999874 5899999999999999999999873 123333332211
Q ss_pred ccccccCccchhccCCeeEEEEeccccC-----cccHHHHHHHHHHhccCCCC
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYS-----DDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~-----~~~~~~l~~tl~~lL~~~~~ 246 (330)
..++||+|+++-.+++ ....+.+++.+.++|++++.
T Consensus 258 ------------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~ 298 (342)
T PRK09489 258 ------------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGE 298 (342)
T ss_pred ------------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCE
Confidence 1257999999877764 34568899999999988643
No 48
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.04 E-value=3.6e-09 Score=95.80 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.++.+|||+|||+|..+..++.. +.+|+++|+++.+++.++.|+..+. ..++.+...|..+...
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~-------- 110 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAMELPF-------- 110 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhcCCC--------
Confidence 45789999999999999988875 3599999999999999999987655 2456666666543210
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
..++||+|+++.++.+......+++.+.++|++++
T Consensus 111 ---------------~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG 145 (231)
T TIGR02752 111 ---------------DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGG 145 (231)
T ss_pred ---------------CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCe
Confidence 12479999999988888888899999999998764
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.04 E-value=1.1e-08 Score=82.83 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.++.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|+..++. .++.+...+.....+.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~-------- 84 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-----SNIVIVEGDAPEALED-------- 84 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEeccccccChh--------
Confidence 45789999999999999999886 46899999999999999999988753 3456655553321100
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
...+||+|+.... ......+++.+.++|++++
T Consensus 85 --------------~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG 116 (124)
T TIGR02469 85 --------------SLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGG 116 (124)
T ss_pred --------------hcCCCCEEEECCc---chhHHHHHHHHHHHcCCCC
Confidence 1247999997543 3355789999999998764
No 50
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.03 E-value=3.8e-09 Score=98.23 Aligned_cols=99 Identities=20% Similarity=0.181 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh-C--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~-~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
-.|.+|||+|||+|..++.+++. + .+|+++|+++.+++.+++|+..++. .++.+...++.+..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l~--------- 141 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEALP--------- 141 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhCC---------
Confidence 46889999999999988877765 3 4799999999999999999987652 45666666654421
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
+ ..+.||+|++.-++++......+++.+.++|++++
T Consensus 142 -------------~-~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG 177 (272)
T PRK11873 142 -------------V-ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGG 177 (272)
T ss_pred -------------C-CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCc
Confidence 0 12479999999898888888899999999998864
No 51
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.03 E-value=4.4e-09 Score=97.59 Aligned_cols=103 Identities=16% Similarity=0.031 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh-C--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~-~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.++.+|||+|||||..++.+++. + .+|+++|++++|++.++++........ ..++.+...|..+..-
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~--~~~i~~~~~d~~~lp~-------- 141 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC--YKNIEWIEGDATDLPF-------- 141 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc--CCCeEEEEcccccCCC--------
Confidence 45789999999999999888875 3 589999999999999987764321100 2457777766544210
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
..+.||+|+++.++.+......+++.+.++|++|+.
T Consensus 142 ---------------~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 142 ---------------DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSR 177 (261)
T ss_pred ---------------CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcE
Confidence 124799999999999988999999999999988743
No 52
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=4.1e-09 Score=98.77 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=49.9
Q ss_pred eEEEEcCccCHHHHHHHHhCC--eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 123 ISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~~~--~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+|||||||+|.+++.+|+.+. +|++||+|+++++.+++|+..|+. .++.+...||...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-----~~~~~~~~dlf~~ 172 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-----VRVLVVQSDLFEP 172 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-----ccEEEEeeecccc
Confidence 899999999999999999864 999999999999999999999984 3344444488876
No 53
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.02 E-value=4.6e-09 Score=98.03 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=86.2
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (330)
|-....+++++.. ..-.|.+|||||||.|-+++.+|+. |.+|++..++++..+.+++.+...+. ...+.+..
T Consensus 46 AQ~~k~~~~~~~~---~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~ 118 (273)
T PF02353_consen 46 AQERKLDLLCEKL---GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL----EDRVEVRL 118 (273)
T ss_dssp HHHHHHHHHHTTT---T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEE
T ss_pred HHHHHHHHHHHHh---CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEE
Confidence 4455566777664 5668999999999999999999998 99999999999999999999987664 46788888
Q ss_pred ecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCc--ccHHHHHHHHHHhccCCCC
Q 020158 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~--~~~~~l~~tl~~lL~~~~~ 246 (330)
.||.+. ..+||-|++-+++.+. ...+.+++.+.++|+|++.
T Consensus 119 ~D~~~~--------------------------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 119 QDYRDL--------------------------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp S-GGG-----------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred eecccc--------------------------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence 888753 1389999999999886 6789999999999988743
No 54
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.00 E-value=4e-09 Score=95.03 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=80.0
Q ss_pred CeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
++|||+|||+|..++.+++. +.+|+++|+++++++.++.|+..++. ..++.+...|.....
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDP------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCC-------------
Confidence 57999999999998888876 36899999999999999999987653 456788777764431
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
..++||+|++..++++....+.+++.+.++|++++
T Consensus 64 -----------~~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG 98 (224)
T smart00828 64 -----------FPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGG 98 (224)
T ss_pred -----------CCCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCC
Confidence 12479999999999998889999999999998864
No 55
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.00 E-value=4.7e-09 Score=96.82 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
...+.+|||||||+|..+..++.. +.+|+++|+++.|++.++.+ ++.+...|..+.
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~---------- 84 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GVDARTGDVRDW---------- 84 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhC----------
Confidence 346789999999999999999887 67999999999999988642 133444332211
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
....+||+|+++.++++......+++.+.++|++|+
T Consensus 85 --------------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG 120 (255)
T PRK14103 85 --------------KPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGS 120 (255)
T ss_pred --------------CCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCc
Confidence 012479999999999998888999999999998864
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.99 E-value=1.8e-09 Score=85.18 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=69.3
Q ss_pred EEEEcCccCHHHHHHHHhC-----CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 124 SLELGAGTGLAGILLSRVA-----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 124 VLELG~GtGL~gl~lA~~~-----~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
|||||||+|-....++... .++++.|+++++|+.++++..... .++++...|..+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l------------- 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDL------------- 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCH-------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHC-------------
Confidence 7999999999999888874 799999999999999999998743 3677777776542
Q ss_pred ccccccCccchhccCCeeEEEEecc-ccC--cccHHHHHHHHHHhccCC
Q 020158 199 QERYSWNSSELKEVQRASVLLAADV-IYS--DDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDv-iY~--~~~~~~l~~tl~~lL~~~ 244 (330)
....++||+|+++.. +.+ +.....+++.+.++++++
T Consensus 62 ----------~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 62 ----------PFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp ----------HHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ----------cccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 013458999999655 443 457788999999999765
No 57
>PRK08317 hypothetical protein; Provisional
Probab=98.98 E-value=1.4e-08 Score=91.38 Aligned_cols=111 Identities=13% Similarity=0.006 Sum_probs=83.6
Q ss_pred HHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE
Q 020158 103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (330)
Q Consensus 103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (330)
..+-+.++... ...++.+|||+|||+|..+..++.. ..+|+++|.++.+++.++++.... ..++.+..
T Consensus 5 ~~~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~ 75 (241)
T PRK08317 5 RRYRARTFELL---AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVR 75 (241)
T ss_pred HHHHHHHHHHc---CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEe
Confidence 33444444442 4456889999999999999888876 368999999999999999883322 24566666
Q ss_pred ecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
.|...... ....||+|++..++.+......+++.+.++|++++
T Consensus 76 ~d~~~~~~-----------------------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG 118 (241)
T PRK08317 76 GDADGLPF-----------------------PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118 (241)
T ss_pred cccccCCC-----------------------CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCc
Confidence 66543210 12579999999999998889999999999998864
No 58
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.98 E-value=9.4e-09 Score=91.98 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.++.+|||+|||+|..+..++.. +.+|+++|+++.+++.++.|.. .+.+...+..++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~~~---------- 101 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFDPF---------- 101 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccCCC----------
Confidence 46779999999999999988876 5799999999999999987641 2333444433310
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
..++||+|++..++++.. .+.+.+.+.++.+..++
T Consensus 102 --------------~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~~ 136 (204)
T TIGR03587 102 --------------KDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSNR 136 (204)
T ss_pred --------------CCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcCc
Confidence 135799999999998753 34444555555544333
No 59
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4e-09 Score=91.80 Aligned_cols=64 Identities=25% Similarity=0.261 Sum_probs=56.4
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 116 SSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..+++|++|+|||||||.+|+.++.+| .+|++.|+++++++.++.|+..+ .+.+.+..-|-.+.
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~ 105 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDF 105 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhc
Confidence 478999999999999999999999997 79999999999999999999984 37788877775554
No 60
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.98 E-value=9.6e-09 Score=92.42 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=79.1
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC---eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW---TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~---~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v 177 (330)
.+..+..++.+.. ...++.+|||+|||+|..++.+|+... +|++.|+++++++.+++|+..++. .++++
T Consensus 61 ~~p~~~~~~~~~l---~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-----~~v~~ 132 (215)
T TIGR00080 61 SAPHMVAMMTELL---ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-----DNVIV 132 (215)
T ss_pred chHHHHHHHHHHh---CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCeEE
Confidence 3344444555443 445789999999999999999998843 499999999999999999998763 56777
Q ss_pred EEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
...|..+..+ ...+||+|+..... ..+.+.+.+.|++++ .+++
T Consensus 133 ~~~d~~~~~~-----------------------~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG--~lv~ 175 (215)
T TIGR00080 133 IVGDGTQGWE-----------------------PLAPYDRIYVTAAG------PKIPEALIDQLKEGG--ILVM 175 (215)
T ss_pred EECCcccCCc-----------------------ccCCCCEEEEcCCc------ccccHHHHHhcCcCc--EEEE
Confidence 7777554311 12479999976443 223455777887764 4444
No 61
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.98 E-value=8.4e-09 Score=93.06 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=71.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
..++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++++...++. ..++.+...|+...
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~------------ 124 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLESL------------ 124 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCchhc------------
Confidence 35678999999999999999998888999999999999999999876542 24567776663321
Q ss_pred cccccccCccchhccCCeeEEEEeccccC--cccHHHHHHHHHHhc
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLM 241 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL 241 (330)
.+.||+|++.+++++ ......+++.+.+++
T Consensus 125 --------------~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 125 --------------LGRFDTVVCLDVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred --------------cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence 247999999999855 234455556665554
No 62
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.97 E-value=1.5e-08 Score=91.43 Aligned_cols=99 Identities=17% Similarity=0.063 Sum_probs=81.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
++.+|||+|||+|..++.++..+ .+|+++|+++.+++.+++|+..+.. ..++.+...|+.+...
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~--------- 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDAEALPF--------- 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEecccccCCC---------
Confidence 57899999999999999988875 7999999999999999999876542 3567777777655311
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
....||+|+++-++.+......+++.+.++|++++
T Consensus 118 --------------~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG 152 (239)
T PRK00216 118 --------------PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGG 152 (239)
T ss_pred --------------CCCCccEEEEecccccCCCHHHHHHHHHHhccCCc
Confidence 12479999999999998899999999999998763
No 63
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.97 E-value=5.6e-09 Score=93.05 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCccCHHHHHH-HHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 119 FNGIISLELGAGTGLAGILL-SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l-A~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
..+.+|||||||+|..|+.+ ++.+.+|++.|.++.+++.+++|++.|+. .++.+...|+.+..+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~~D~~~~l~---------- 116 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-----GNARVVNTNALSFLA---------- 116 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEchHHHHHh----------
Confidence 46789999999999999964 44467999999999999999999999873 467777777654210
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHh--ccCCCCeEEEEEeeeeCc
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRL--MPLGSKKVLYLALEKRYN 258 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~l--L~~~~~~~i~va~~~R~~ 258 (330)
.....||+|+..-. |.....+.+++.|... + .+++++|+.+.++..
T Consensus 117 ------------~~~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l--~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 117 ------------QPGTPHNVVFVDPP-FRKGLLEETINLLEDNGWL--ADEALIYVESEVENG 164 (199)
T ss_pred ------------hcCCCceEEEECCC-CCCChHHHHHHHHHHCCCc--CCCcEEEEEecCCCC
Confidence 01236999986555 7778888888888773 4 346789988766544
No 64
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.97 E-value=9.4e-09 Score=94.52 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=79.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.+.+|||||||+|..++.+++. +.+|+++|.++.|++.+++|+..++. ..++.+...+..+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d~~~~---------- 121 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDI---------- 121 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCChhhC----------
Confidence 5689999999999998888763 47999999999999999999987653 34677777665432
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCcc--cHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~--~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
....+|+|+++-++++.. ....+++.+.+.|++| +.++++.
T Consensus 122 ---------------~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpG--G~l~l~e 164 (247)
T PRK15451 122 ---------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG--GALVLSE 164 (247)
T ss_pred ---------------CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCC--CEEEEEE
Confidence 113589999988776543 3468999999999876 4555554
No 65
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.97 E-value=9.1e-09 Score=90.90 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=76.6
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
..+++.++||||||.|--++.+|++|..|++.|.++..++.+++-++.++ -.+++...|..+..
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~~~~---------- 90 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLNDFD---------- 90 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS----------
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecchhcc----------
Confidence 45678899999999999999999999999999999999999988777665 34777777765531
Q ss_pred ccccccccCccchhccCCeeEEEEeccccC--cccHHHHHHHHHHhccCCC
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL~~~~ 245 (330)
..+.||+|++.-|+++ .+..+.+++.++..+++|+
T Consensus 91 --------------~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG 127 (192)
T PF03848_consen 91 --------------FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGG 127 (192)
T ss_dssp ---------------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEE
T ss_pred --------------ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcE
Confidence 1247999998766655 5678889999999998764
No 66
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.95 E-value=2.1e-08 Score=96.18 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=75.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
.+.+|||||||+|..++.+++. +.+|+++|.++.|++.+++|... .++.+...|..+..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp----------- 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLP----------- 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCC-----------
Confidence 5679999999999999888775 47999999999999999988642 23455555544321
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
. ..+.||+|+++.++++....+.+++.+.++|++++.
T Consensus 174 -----------~-~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~ 210 (340)
T PLN02490 174 -----------F-PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210 (340)
T ss_pred -----------C-CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcE
Confidence 0 125799999999998888888999999999988643
No 67
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.94 E-value=1.3e-08 Score=91.64 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.++++|||||||+|..+..+++.+ .+|+++|.++.++..++.+.. .++.+...|..+...
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~--------- 94 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAEKLPL--------- 94 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchhhCCC---------
Confidence 556899999999999999998875 568999999999988876553 234555555443210
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
...+||+|+++.++++......+++.+.++|+++ +.++++
T Consensus 95 --------------~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~--G~l~~~ 134 (240)
T TIGR02072 95 --------------EDSSFDLIVSNLALQWCDDLSQALSELARVLKPG--GLLAFS 134 (240)
T ss_pred --------------CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCC--cEEEEE
Confidence 1247999999999999888999999999999876 344443
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=3.3e-08 Score=88.42 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=78.9
Q ss_pred HHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE
Q 020158 103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (330)
Q Consensus 103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (330)
..+..++.+.. ....+.+|||+|||+|..+..+++. +.+|++.|+++.+++.+++|+..++. ..++++..
T Consensus 58 p~~~~~~~~~l---~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~ 130 (205)
T PRK13944 58 PHMVAMMCELI---EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYH 130 (205)
T ss_pred HHHHHHHHHhc---CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEE
Confidence 33445555442 3346789999999999999888876 36999999999999999999988763 24577777
Q ss_pred ecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
.|..+..+ ...+||+|++.-.+. .+.+.+.+.|++++ .+++.
T Consensus 131 ~d~~~~~~-----------------------~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG--~lvi~ 172 (205)
T PRK13944 131 GDGKRGLE-----------------------KHAPFDAIIVTAAAS------TIPSALVRQLKDGG--VLVIP 172 (205)
T ss_pred CCcccCCc-----------------------cCCCccEEEEccCcc------hhhHHHHHhcCcCc--EEEEE
Confidence 77544311 124799999886654 23356677887663 44443
No 69
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.93 E-value=1.8e-08 Score=90.62 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=91.3
Q ss_pred chHHHHHHHHhhhcCC-CCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 020158 100 KAELVLADFVMHKMCT-SSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (330)
Q Consensus 100 ~aa~~La~~l~~~~~~-~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~ 178 (330)
........|+...... ....++.+|||+|||+|..+..+++.+.+|+++|.++.+++.++.|+..+.. .++.+.
T Consensus 24 ~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~ 98 (224)
T TIGR01983 24 KMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-----LKIEYR 98 (224)
T ss_pred HhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-----CceEEE
Confidence 3334445666554311 1235688999999999999998888888899999999999999999987652 245555
Q ss_pred EecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
..++.+... ....+||+|+++.++++......+++.+.++|+++ +.++++.
T Consensus 99 ~~d~~~~~~----------------------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~g--G~l~i~~ 149 (224)
T TIGR01983 99 CTSVEDLAE----------------------KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPG--GILFFST 149 (224)
T ss_pred eCCHHHhhc----------------------CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCC--cEEEEEe
Confidence 555433210 01257999999999999999999999999999775 4455543
No 70
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.93 E-value=1.7e-08 Score=92.10 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
..+.+|||||||+|..++.+++. +.+|++.|+++.|++.+++++..... ..++.+...|+.+..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~-------- 119 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVE-------- 119 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCC--------
Confidence 36679999999999999888874 46899999999999999999876432 246777777766531
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCcc--cHHHHHHHHHHhccCCCCeEEEEEeeee
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKVLYLALEKR 256 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~--~~~~l~~tl~~lL~~~~~~~i~va~~~R 256 (330)
...+|+|+++.++.+.. ....+++.+.+.|+++ +.++++-..+
T Consensus 120 -----------------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkpg--G~l~i~d~~~ 164 (239)
T TIGR00740 120 -----------------IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN--GVLVLSEKFR 164 (239)
T ss_pred -----------------CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCC--eEEEEeeccc
Confidence 13589999988887643 4577999999999776 4566654333
No 71
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.92 E-value=1.1e-08 Score=96.07 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=76.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
.+.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|+..|+. ..++.+...|+.+..+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~~~~D~~~~~~---------- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL----EDRVTLIQSDLFAALP---------- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhccC----------
Confidence 3578999999999999999987 46999999999999999999999874 3568888888754311
Q ss_pred cccccccCccchhccCCeeEEEEecc--------------ccCc-----------ccHHHHHHHHHHhccCCCCeEEEE
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADV--------------IYSD-----------DLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDv--------------iY~~-----------~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
..+||+|++.-. .|.+ .....+++.+.++|++++ .+++
T Consensus 187 --------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG--~l~~ 249 (284)
T TIGR03533 187 --------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENG--VLVV 249 (284)
T ss_pred --------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCC--EEEE
Confidence 136999998522 1221 134677888888997764 4444
No 72
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.92 E-value=2.5e-08 Score=89.64 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=77.9
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v 177 (330)
++..+..++.... ...+|.+|||+|||+|..+..+++.. .+|++.|+++++++.+++|+..++ ..++.+
T Consensus 60 ~~p~~~~~~~~~l---~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~ 131 (212)
T PRK13942 60 SAIHMVAIMCELL---DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEV 131 (212)
T ss_pred CcHHHHHHHHHHc---CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEE
Confidence 4455555565543 44578999999999999998888773 599999999999999999998876 356777
Q ss_pred EEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
...|-...++ ...+||+|++.-.+. .+...+.+.|++++.
T Consensus 132 ~~gd~~~~~~-----------------------~~~~fD~I~~~~~~~------~~~~~l~~~LkpgG~ 171 (212)
T PRK13942 132 IVGDGTLGYE-----------------------ENAPYDRIYVTAAGP------DIPKPLIEQLKDGGI 171 (212)
T ss_pred EECCcccCCC-----------------------cCCCcCEEEECCCcc------cchHHHHHhhCCCcE
Confidence 7776433211 125799998764432 233456678877653
No 73
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.91 E-value=2e-08 Score=89.17 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=75.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (330)
...++.+|||+|||+|..++.+|+. +.+|++.|.++.+++.+++|+..|+. ..++.+...|..+..+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~~~~d~~~~l~------ 106 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVLIKGEAPEILF------ 106 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEEEEechhhhHh------
Confidence 4567889999999999999998875 36899999999999999999998863 2456666655433210
Q ss_pred CCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
.....||.|+..- .......+++.+.++|++++
T Consensus 107 ----------------~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG 139 (198)
T PRK00377 107 ----------------TINEKFDRIFIGG---GSEKLKEIISASWEIIKKGG 139 (198)
T ss_pred ----------------hcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCc
Confidence 0124799998732 23456788999999998764
No 74
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=4e-08 Score=88.08 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=79.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEe
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL 180 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~l 180 (330)
++..+..++.... ...++.+|||+|||+|..+..+++.+.+|++.|+++.+++.+++|+..++. .++.+...
T Consensus 62 ~~p~~~~~l~~~l---~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-----~~v~~~~~ 133 (212)
T PRK00312 62 SQPYMVARMTELL---ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-----HNVSVRHG 133 (212)
T ss_pred CcHHHHHHHHHhc---CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-----CceEEEEC
Confidence 3344445554442 345678999999999999998888877999999999999999999988752 45777777
Q ss_pred cCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
|..+..+ ...+||+|+..-.+ ..+.+.+.++|++++ .+++.
T Consensus 134 d~~~~~~-----------------------~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG--~lv~~ 174 (212)
T PRK00312 134 DGWKGWP-----------------------AYAPFDRILVTAAA------PEIPRALLEQLKEGG--ILVAP 174 (212)
T ss_pred CcccCCC-----------------------cCCCcCEEEEccCc------hhhhHHHHHhcCCCc--EEEEE
Confidence 6543211 12579999976543 233456778887753 44443
No 75
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.88 E-value=1.1e-08 Score=91.22 Aligned_cols=106 Identities=9% Similarity=-0.003 Sum_probs=77.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecC-CCCCCCCccCCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW-MNPWPPIFSLGNSS 196 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW-~~~~~~~~~~~~~~ 196 (330)
.+.+|||+|||+|..++.+++. +.+|+++|+++.+++.+++|+..++ ..++.+...|+ .....
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~--------- 105 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLD--------- 105 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHH---------
Confidence 5679999999999999988876 4689999999999999999999876 25677877776 32100
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcc--------cHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~--------~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
.-....||+|+..-...+.. ..+.+++.+.++|+++ +.++++.
T Consensus 106 ------------~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg--G~l~i~~ 156 (202)
T PRK00121 106 ------------MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG--GEIHFAT 156 (202)
T ss_pred ------------HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCC--CEEEEEc
Confidence 00134799998753321111 2578999999999775 5566644
No 76
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.88 E-value=2.7e-08 Score=99.03 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=87.8
Q ss_pred Eeech-HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCee
Q 020158 97 QVWKA-ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV 175 (330)
Q Consensus 97 ~vW~a-a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v 175 (330)
|+.+. +..|.+.+.... ....+.+|||||||+|..++.+|+.+.+|+++|+++.+++.+++|+..|+. .++
T Consensus 276 q~n~~~~e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v 347 (443)
T PRK13168 276 QVNAQVNQKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-----DNV 347 (443)
T ss_pred EcCHHHHHHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-----Cce
Confidence 44443 355666666553 334678999999999999999999999999999999999999999999873 468
Q ss_pred EEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEee
Q 020158 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALE 254 (330)
Q Consensus 176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~ 254 (330)
.+...|+.+..... ......||+|+. |.=|.. ....++.+.+ ..++.++|++..
T Consensus 348 ~~~~~d~~~~l~~~-------------------~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~---~~~~~ivyvSCn 401 (443)
T PRK13168 348 TFYHANLEEDFTDQ-------------------PWALGGFDKVLL-DPPRAG--AAEVMQALAK---LGPKRIVYVSCN 401 (443)
T ss_pred EEEEeChHHhhhhh-------------------hhhcCCCCEEEE-CcCCcC--hHHHHHHHHh---cCCCeEEEEEeC
Confidence 88888876532110 001246999875 444432 2344455544 355789999863
No 77
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.87 E-value=1.9e-08 Score=95.56 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=74.0
Q ss_pred CeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
.+|||+|||+|..++.++.. +.+|+++|+++.+++.+++|+..|+. ..++.+...|+.+..+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~~l~------------ 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFAALP------------ 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhhhCC------------
Confidence 68999999999999999987 46999999999999999999998874 3568888888754311
Q ss_pred cccccCccchhccCCeeEEEEec--------------cccCc-----------ccHHHHHHHHHHhccCCC
Q 020158 200 ERYSWNSSELKEVQRASVLLAAD--------------VIYSD-----------DLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaD--------------viY~~-----------~~~~~l~~tl~~lL~~~~ 245 (330)
..+||+|++.- +.|.+ .....+++.+.++|++++
T Consensus 199 ------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG 257 (307)
T PRK11805 199 ------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDG 257 (307)
T ss_pred ------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCC
Confidence 13699999852 22222 234678888889997764
No 78
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.86 E-value=2.8e-08 Score=90.57 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=89.7
Q ss_pred eEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCC
Q 020158 96 LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQG 173 (330)
Q Consensus 96 ~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~ 173 (330)
.+.|+...+-.- ...+|.+|||+|||||-.++.+++.. .+|++.|+++.||+.+++.+..-+. .
T Consensus 36 ~~~Wr~~~i~~~---------~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-----~ 101 (238)
T COG2226 36 HRLWRRALISLL---------GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-----Q 101 (238)
T ss_pred hHHHHHHHHHhh---------CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc-----c
Confidence 468987655332 12279999999999999999999985 7999999999999999988865331 2
Q ss_pred eeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
.+.+...|-.+.+= ....||+|.++=.+-+....+..++.+.|.|+|++
T Consensus 102 ~i~fv~~dAe~LPf-----------------------~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG 150 (238)
T COG2226 102 NVEFVVGDAENLPF-----------------------PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGG 150 (238)
T ss_pred ceEEEEechhhCCC-----------------------CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCe
Confidence 26666666554310 23589999999999999999999999999999875
No 79
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.85 E-value=5.1e-08 Score=91.53 Aligned_cols=100 Identities=17% Similarity=0.245 Sum_probs=75.6
Q ss_pred CeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
.+|||+|||+|..++.++... .+|+++|+++.+++.+++|+..|+. ..++.+...||.+..+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~~~~d~~~~~~------------ 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL----EHRVEFIQSNLFEPLA------------ 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhccCc------------
Confidence 689999999999999999874 6999999999999999999998874 2458888888865421
Q ss_pred cccccCccchhccCCeeEEEEec-------------cc-cCc-----------ccHHHHHHHHHHhccCCCCeEEEE
Q 020158 200 ERYSWNSSELKEVQRASVLLAAD-------------VI-YSD-----------DLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaD-------------vi-Y~~-----------~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
..+||+|++.- ++ |.+ .....+++...++|+++ +.+++
T Consensus 180 ------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g--G~l~~ 242 (284)
T TIGR00536 180 ------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN--GFLVC 242 (284)
T ss_pred ------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC--CEEEE
Confidence 12689988852 21 222 14667888888899775 34444
No 80
>PRK05785 hypothetical protein; Provisional
Probab=98.85 E-value=2e-08 Score=91.26 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 121 GIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
+.+|||||||||..+..+++. +.+|+++|.+++||+.++.+. . ....+..+. +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~----------~---~~~~d~~~l-p------------ 105 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD----------D---KVVGSFEAL-P------------ 105 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc----------c---eEEechhhC-C------------
Confidence 679999999999999999887 689999999999999887531 1 112222221 0
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccC
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~ 243 (330)
. ..++||+|+++.++.+....+.+++.+.+.|++
T Consensus 106 ---------~-~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 106 ---------F-RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred ---------C-CCCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence 0 135899999999999988999999999999976
No 81
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.85 E-value=5.1e-08 Score=95.39 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~ 178 (330)
....|.+.+.... .++.+|||||||+|..++.+++. +.+|+++|+++.+++.+++|+..|+ .++.+.
T Consensus 237 eTE~LVe~aL~~l-----~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g------~rV~fi 305 (423)
T PRK14966 237 ETEHLVEAVLARL-----PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG------ARVEFA 305 (423)
T ss_pred cHHHHHHHhhhcc-----CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEE
Confidence 3557777776542 24569999999999999998875 5799999999999999999998875 368888
Q ss_pred EecCCCC
Q 020158 179 DLNWMNP 185 (330)
Q Consensus 179 ~ldW~~~ 185 (330)
..||.+.
T Consensus 306 ~gDl~e~ 312 (423)
T PRK14966 306 HGSWFDT 312 (423)
T ss_pred Ecchhcc
Confidence 8888653
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.85 E-value=7.4e-08 Score=87.94 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=86.3
Q ss_pred eechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCee
Q 020158 98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV 175 (330)
Q Consensus 98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v 175 (330)
.++.+..+.+.++... .-.+.+|||+|||+|..++.++.. ..+|+++|+++.+++.++.|+..++. .++
T Consensus 69 p~~~~~~l~~~~l~~~----~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~ 139 (251)
T TIGR03534 69 PRPDTEELVEAALERL----KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-----DNV 139 (251)
T ss_pred CCCChHHHHHHHHHhc----ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeE
Confidence 4566677777776653 124569999999999999999987 56999999999999999999998763 467
Q ss_pred EEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCc--------------------------cc
Q 020158 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------------------------DL 229 (330)
Q Consensus 176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~--------------------------~~ 229 (330)
.+...|+.+.. ...+||+|++.-..+.. ..
T Consensus 140 ~~~~~d~~~~~------------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 195 (251)
T TIGR03534 140 TFLQSDWFEPL------------------------PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF 195 (251)
T ss_pred EEEECchhccC------------------------cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence 88888776531 12479999985433211 11
Q ss_pred HHHHHHHHHHhccCCCCeEEEE
Q 020158 230 TDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 230 ~~~l~~tl~~lL~~~~~~~i~v 251 (330)
...+++.+.++|++++ .+++
T Consensus 196 ~~~~i~~~~~~L~~gG--~~~~ 215 (251)
T TIGR03534 196 YRRIIAQAPRLLKPGG--WLLL 215 (251)
T ss_pred HHHHHHHHHHhcccCC--EEEE
Confidence 2467888888997764 4444
No 83
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.85 E-value=6e-08 Score=89.51 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=79.8
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~ 178 (330)
.+..|.+.+.... .....+.+|||||||+|..++.+++. +.+|+++|+++.+++.+++|+..|+ +++.
T Consensus 69 ~Te~Lv~~~l~~~--~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--------~~~~ 138 (251)
T TIGR03704 69 RTEFLVDEAAALA--RPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--------GTVH 138 (251)
T ss_pred cHHHHHHHHHHhh--cccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------CEEE
Confidence 4556666665432 11123458999999999999999876 4699999999999999999998875 2456
Q ss_pred EecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCc--------------------------ccHHH
Q 020158 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD--------------------------DLTDA 232 (330)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~--------------------------~~~~~ 232 (330)
..||.+..+.. ..++||+|++.-..+.. +.+..
T Consensus 139 ~~D~~~~l~~~---------------------~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~ 197 (251)
T TIGR03704 139 EGDLYDALPTA---------------------LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRR 197 (251)
T ss_pred Eeechhhcchh---------------------cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHH
Confidence 66665431100 12469999876443211 12457
Q ss_pred HHHHHHHhccCCCCeEEEEE
Q 020158 233 LFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 233 l~~tl~~lL~~~~~~~i~va 252 (330)
+++...++|+++ +.+++.
T Consensus 198 i~~~a~~~L~~g--G~l~l~ 215 (251)
T TIGR03704 198 VAAGAPDWLAPG--GHLLVE 215 (251)
T ss_pred HHHHHHHhcCCC--CEEEEE
Confidence 777888899776 345543
No 84
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.85 E-value=1.9e-08 Score=95.20 Aligned_cols=102 Identities=17% Similarity=0.275 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 116 SSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
...|++|+|||+|||||++|+.+|+.| ++|++.|.+ .+.+.++..+..|+. ...+++....-.+..
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~----~~ii~vi~gkvEdi~-------- 122 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGL----EDVITVIKGKVEDIE-------- 122 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCc----cceEEEeecceEEEe--------
Confidence 467999999999999999999999996 589999998 777999999999986 455666655433321
Q ss_pred CCccccccccCccchhccCCeeEEEE---eccccCcccHHHHHHHHHHhccCCC
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLA---ADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIla---aDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
++ .++.|+|+. .-++++...++..+-+=.+.|+++|
T Consensus 123 --------------LP-~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G 161 (346)
T KOG1499|consen 123 --------------LP-VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGG 161 (346)
T ss_pred --------------cC-ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCc
Confidence 11 368999995 4566778888888888899998764
No 85
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.84 E-value=6.4e-08 Score=85.57 Aligned_cols=113 Identities=14% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCC-eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~-~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.+.|++||||+||+|..|+.++.+|+ +|++.|.++.+++.+++|++.|+. ..++.+...|-.+....
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~~~~l~~-------- 114 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSALRALKF-------- 114 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhHHHHHHH--------
Confidence 46789999999999999999999965 899999999999999999999974 24566666654221000
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHH--hccCCCCeEEEEEeeee
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKR--LMPLGSKKVLYLALEKR 256 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~--lL~~~~~~~i~va~~~R 256 (330)
......++.||..|.-|.....+.++..+.. ++ .+++++++-..++
T Consensus 115 ------------~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l--~~~~iiv~E~~~~ 162 (189)
T TIGR00095 115 ------------LAKKPTFDNVIYLDPPFFNGALQALLELCENNWIL--EDTVLIVVEEDRE 162 (189)
T ss_pred ------------hhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCC--CCCeEEEEEecCC
Confidence 0011245667778888888777777776655 34 3345665544433
No 86
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.83 E-value=4.9e-08 Score=91.18 Aligned_cols=116 Identities=13% Similarity=0.156 Sum_probs=78.5
Q ss_pred echHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 020158 99 WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (330)
Q Consensus 99 W~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v 177 (330)
|++.+--.. +..+. ..++|++|||+|||.|..+.-++..| +.|+++|.++.. .++..+...-... ...+..
T Consensus 98 WrSd~KW~r-l~p~l---~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg~--~~~~~~ 169 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHL---PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLGQ--DPPVFE 169 (315)
T ss_pred ccccchHHH-HHhhh---CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhCC--CccEEE
Confidence 666554333 33332 46899999999999999999999986 579999987543 3332222211100 122333
Q ss_pred EEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
..+-..+. ...+.||+|++.-|+||....-..++.++..|++|+.
T Consensus 170 lplgvE~L------------------------p~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGe 214 (315)
T PF08003_consen 170 LPLGVEDL------------------------PNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGE 214 (315)
T ss_pred cCcchhhc------------------------cccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCE
Confidence 33332221 1246899999999999999999999999999988753
No 87
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.83 E-value=5.4e-08 Score=95.11 Aligned_cols=95 Identities=11% Similarity=0.071 Sum_probs=75.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
...+|.+|||+|||+|..++.+|+. +.+|+++|+++++++.+++++. + ..+++...|+.+.
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~------l~v~~~~~D~~~l---------- 225 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--G------LPVEIRLQDYRDL---------- 225 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--c------CeEEEEECchhhc----------
Confidence 3457889999999999999988875 7899999999999999998873 1 2355555554331
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCc--ccHHHHHHHHHHhccCCC
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~--~~~~~l~~tl~~lL~~~~ 245 (330)
.++||+|++..++++. ...+.+++.+.++|++++
T Consensus 226 ----------------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG 261 (383)
T PRK11705 226 ----------------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDG 261 (383)
T ss_pred ----------------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCc
Confidence 2479999999998875 356789999999998864
No 88
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.82 E-value=5.3e-08 Score=95.47 Aligned_cols=109 Identities=14% Similarity=0.022 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
.+|++|||||||||..++.++..+ .+|+++|.++.+++.+++|+.+|+.. ..++++...|..+....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~---~~~v~~i~~D~~~~l~~--------- 286 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRT--------- 286 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCcEEEEEccHHHHHHH---------
Confidence 468999999999999999877665 49999999999999999999999842 13677777775442100
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcc---------cHHHHHHHHHHhccCCCCeEEEE
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDD---------LTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~---------~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
......+||+|++.-..|... .+..++....++|+++ +.++.
T Consensus 287 ----------~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g--G~lv~ 337 (396)
T PRK15128 287 ----------YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG--GILLT 337 (396)
T ss_pred ----------HHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC--eEEEE
Confidence 001134799999554433322 2445555667888765 44444
No 89
>PRK04266 fibrillarin; Provisional
Probab=98.81 E-value=2.6e-07 Score=83.98 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=79.8
Q ss_pred CcCeEeech------HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHH
Q 020158 93 SVGLQVWKA------ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 93 ~~G~~vW~a------a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
..++++|.. +.+|+.+ +.. ...+|.+|||+|||+|..++.++... .+|++.|.++.|++.+.+++..
T Consensus 44 ~~~~~~~~~~r~~~~~~ll~~~--~~l---~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~ 118 (226)
T PRK04266 44 GVEYREWNPRRSKLAAAILKGL--KNF---PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE 118 (226)
T ss_pred CcEEEEECCCccchHHHHHhhH--hhC---CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh
Confidence 345666654 4444444 111 34578899999999999999999873 5899999999999988887754
Q ss_pred ccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 165 NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 165 N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
. .++.+...|-..+... ......||+|+. |.- ++.....+++.+.++|++|
T Consensus 119 ~-------~nv~~i~~D~~~~~~~--------------------~~l~~~~D~i~~-d~~-~p~~~~~~L~~~~r~LKpG 169 (226)
T PRK04266 119 R-------KNIIPILADARKPERY--------------------AHVVEKVDVIYQ-DVA-QPNQAEIAIDNAEFFLKDG 169 (226)
T ss_pred c-------CCcEEEECCCCCcchh--------------------hhccccCCEEEE-CCC-ChhHHHHHHHHHHHhcCCC
Confidence 2 3345444443221000 001245899883 221 1223345688999999886
Q ss_pred CCeEEEEEeeee
Q 020158 245 SKKVLYLALEKR 256 (330)
Q Consensus 245 ~~~~i~va~~~R 256 (330)
+. ++++.+.|
T Consensus 170 G~--lvI~v~~~ 179 (226)
T PRK04266 170 GY--LLLAIKAR 179 (226)
T ss_pred cE--EEEEEecc
Confidence 44 44433433
No 90
>PRK04148 hypothetical protein; Provisional
Probab=98.81 E-value=2.3e-08 Score=83.14 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=72.0
Q ss_pred HHHHHHhhhcCCCCCCCCCeEEEEcCccCH-HHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecC
Q 020158 104 VLADFVMHKMCTSSDFNGIISLELGAGTGL-AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW 182 (330)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL-~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW 182 (330)
.+++||..+. ...++++|||+|||+|. ++..+++.|..|+++|+++..++.++.+. +.+..-|+
T Consensus 3 ~i~~~l~~~~---~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~------------~~~v~dDl 67 (134)
T PRK04148 3 TIAEFIAENY---EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG------------LNAFVDDL 67 (134)
T ss_pred HHHHHHHHhc---ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC------------CeEEECcC
Confidence 4788887764 33567899999999996 99999999999999999999888776542 46677777
Q ss_pred CCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccC
Q 020158 183 MNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (330)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~ 243 (330)
.++ .+.+-=++|+||.......+..-+.++.+.
T Consensus 68 f~p----------------------------~~~~y~~a~liysirpp~el~~~~~~la~~ 100 (134)
T PRK04148 68 FNP----------------------------NLEIYKNAKLIYSIRPPRDLQPFILELAKK 100 (134)
T ss_pred CCC----------------------------CHHHHhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence 765 234444566677766666666666666654
No 91
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.78 E-value=6e-08 Score=101.72 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCC-eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~-~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
.+|++|||||||||..|+.+|+.|+ +|+++|+++.+++.+++|+..|+.. ..++++...|..+...
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~---------- 603 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLK---------- 603 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHH----------
Confidence 4689999999999999999999864 7999999999999999999999852 1467777777543210
Q ss_pred cccccccCccchhccCCeeEEEEecccc-----------CcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIY-----------SDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY-----------~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
....+||+|++.---+ ....+..++..+.++|+++ ++++++
T Consensus 604 ------------~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g--G~l~~~ 655 (702)
T PRK11783 604 ------------EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG--GTLYFS 655 (702)
T ss_pred ------------HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC--CEEEEE
Confidence 0124799999743322 1234567888888899775 455554
No 92
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.77 E-value=1.6e-07 Score=87.21 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=60.7
Q ss_pred chHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 020158 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (330)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v 177 (330)
+.+..|.+++.... ...++.+|||+|||+|..++.++... .+|+++|+++.+++.++.|+..+. ..++.+
T Consensus 91 ~~te~l~~~~~~~~---~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~-----~~~i~~ 162 (275)
T PRK09328 91 PETEELVEWALEAL---LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGL-----GARVEF 162 (275)
T ss_pred CCcHHHHHHHHHhc---cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCC-----CCcEEE
Confidence 34556777766432 33467899999999999999999874 799999999999999999998222 357888
Q ss_pred EEecCCCC
Q 020158 178 RDLNWMNP 185 (330)
Q Consensus 178 ~~ldW~~~ 185 (330)
...||...
T Consensus 163 ~~~d~~~~ 170 (275)
T PRK09328 163 LQGDWFEP 170 (275)
T ss_pred EEccccCc
Confidence 88887553
No 93
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.77 E-value=2.3e-07 Score=82.77 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.++.+|||+|||+|..+..+++.. .+++++|+++.+++.++.|.. . ..++.+...|..+...
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-----~~~i~~~~~d~~~~~~-------- 102 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-----PLNIEFIQADAEALPF-------- 102 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-----CCCceEEecchhcCCC--------
Confidence 378899999999999998888774 389999999999999998875 1 2456666666544210
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
..++||+|+++.++.+......+++.+.++|++++
T Consensus 103 ---------------~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG 137 (223)
T TIGR01934 103 ---------------EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGG 137 (223)
T ss_pred ---------------CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCc
Confidence 12479999999999888889999999999998764
No 94
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.77 E-value=1.4e-07 Score=89.39 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=78.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
-++.+|||+|||+|..++.+++. ..++++.|. +.+++.+++|+...+. ..++++...|..+..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~~~---------- 212 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKES---------- 212 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccCCC----------
Confidence 45689999999999999999987 368999998 6999999999988764 467888888865421
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCc--ccHHHHHHHHHHhccCCCC
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~--~~~~~l~~tl~~lL~~~~~ 246 (330)
...+|+|+.+-++|+. +....+++.+.+.|++|+.
T Consensus 213 ---------------~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~ 249 (306)
T TIGR02716 213 ---------------YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGR 249 (306)
T ss_pred ---------------CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCE
Confidence 1246999999999864 3446799999999988643
No 95
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.75 E-value=1.7e-07 Score=82.94 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.++.+|||+|||+|..++.+++. +.+|+++|.++++++.+++|+..++. .++++...|..+..+.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-----~~v~~~~~d~~~~~~~-------- 105 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-----KNVEVIEGSAPECLAQ-------- 105 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCeEEEECchHHHHhh--------
Confidence 46789999999999999988876 47999999999999999999998763 4566666554321000
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
....+|.|+. + .....+.+++.+.++|++++
T Consensus 106 --------------~~~~~d~v~~-~---~~~~~~~~l~~~~~~LkpgG 136 (196)
T PRK07402 106 --------------LAPAPDRVCI-E---GGRPIKEILQAVWQYLKPGG 136 (196)
T ss_pred --------------CCCCCCEEEE-E---CCcCHHHHHHHHHHhcCCCe
Confidence 0123455433 1 12356788999999998764
No 96
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.75 E-value=9.9e-08 Score=90.89 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
.++.+|||||||+|..++.+|..+.+|++.|+++.+++.+++|+..|+. .++++...|..+...
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-----~~v~~~~~D~~~~~~----------- 235 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-----TNVQFQALDSTQFAT----------- 235 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEcCHHHHHH-----------
Confidence 4578999999999999999999999999999999999999999999873 467777766543210
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeee
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEK 255 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~ 255 (330)
.....||+|+..-. + ......+++.|.. .+++.++|++...
T Consensus 236 -----------~~~~~~D~Vv~dPP-r-~G~~~~~~~~l~~---~~~~~ivyvsc~p 276 (315)
T PRK03522 236 -----------AQGEVPDLVLVNPP-R-RGIGKELCDYLSQ---MAPRFILYSSCNA 276 (315)
T ss_pred -----------hcCCCCeEEEECCC-C-CCccHHHHHHHHH---cCCCeEEEEECCc
Confidence 01236899886533 2 2344455555444 3456788887643
No 97
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=2.1e-09 Score=99.04 Aligned_cols=170 Identities=24% Similarity=0.205 Sum_probs=108.3
Q ss_pred cccccCCCCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHH
Q 020158 85 HNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 85 ~~~~t~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
|........+|+.+|++++.|++++.++ +..+.+++|.++|||+++..+.+++....|...|-...+.-++..|...
T Consensus 58 ~~~~~~~~~tg~~~w~~al~L~~~l~~~---~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~ 134 (262)
T KOG2497|consen 58 HSLRFLLARTGLSVWESALSLEADLRDK---PDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIILL 134 (262)
T ss_pred hHHHHHHHHhccccchHHHHHHHHHhhC---cccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHhc
Confidence 3434566789999999999999999988 3558899999999999999988887765555555444555455555444
Q ss_pred ccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 165 NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 165 N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
|..... ...-+.-.++|...... .|. ....+|+|++|||+|+ ..+.+++.++..+|..+
T Consensus 135 ~~~~~~-~~~~~~~~~~~~~~~~~--------------~~~-----~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~ 193 (262)
T KOG2497|consen 135 SRDLSL-EVRDSAPELNQAFLESK--------------PET-----SQEFTDLLGGADVIYD-TELRHLLETLMTLLLRW 193 (262)
T ss_pred cccccc-cccccchhHHHHHHhcC--------------ccc-----ccchhhheeccCeeeh-hhhhHHHHHHHHHHHhc
Confidence 432211 22233333444332111 011 1124999999999999 99999999999988654
Q ss_pred CCe----EEEEEeeeeCcccccchhhhccccchhhhhh
Q 020158 245 SKK----VLYLALEKRYNFSLNDLDVVANGYSHFRSYI 278 (330)
Q Consensus 245 ~~~----~i~va~~~R~~f~~~~~d~v~~~y~~f~~~l 278 (330)
.+. ......+.+..|+..+.......|.-|+..-
T Consensus 194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~n 231 (262)
T KOG2497|consen 194 RGTGLLTLLTIALESIVVFTSVDTKSLLSVYENFRLNN 231 (262)
T ss_pred cccchhhhhhhcccceEEEeehhhhhhhhhhhhhhhhc
Confidence 322 1223344444555555555555565555543
No 98
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.74 E-value=1.8e-07 Score=84.25 Aligned_cols=127 Identities=11% Similarity=0.125 Sum_probs=83.2
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHc-cC------CCCCCC
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLN-SG------VFSHQG 173 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N-~~------~~~~~~ 173 (330)
..-.|.+|+... ..-++.+||++|||.|--++.+|.+|.+|+++|+++.+++.+....... .. ......
T Consensus 19 p~~~l~~~~~~l----~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 19 VNPLLVKHWPAL----GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CCHHHHHHHHhh----CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecC
Confidence 355677776442 1125679999999999999999999999999999999998753311110 00 000023
Q ss_pred eeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC--cccHHHHHHHHHHhccCCCCeEEEE
Q 020158 174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
++++...|..+.... ....||.|+..-++.+ ++.....++.+.++|++++ ..+++
T Consensus 95 ~v~~~~~D~~~~~~~----------------------~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG-~~ll~ 151 (213)
T TIGR03840 95 NIEIFCGDFFALTAA----------------------DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGA-RQLLI 151 (213)
T ss_pred ceEEEEccCCCCCcc----------------------cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCC-eEEEE
Confidence 566666666553210 1246899987766543 4455678999999998864 34555
Q ss_pred Eee
Q 020158 252 ALE 254 (330)
Q Consensus 252 a~~ 254 (330)
++.
T Consensus 152 ~~~ 154 (213)
T TIGR03840 152 TLD 154 (213)
T ss_pred EEE
Confidence 543
No 99
>PRK06202 hypothetical protein; Provisional
Probab=98.74 E-value=8e-08 Score=87.30 Aligned_cols=93 Identities=19% Similarity=0.094 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----C--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL 192 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~ 192 (330)
.++.+|||||||+|..+..++.. | .+|+++|++++|++.++.+...++ +.+...+-....
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~~~~~~l~------ 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG--------VTFRQAVSDELV------ 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC--------CeEEEEeccccc------
Confidence 35679999999999988888753 2 489999999999999988764332 222222211110
Q ss_pred CCCCccccccccCccchhccCCeeEEEEeccccCccc--HHHHHHHHHHhcc
Q 020158 193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMP 242 (330)
Q Consensus 193 ~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~--~~~l~~tl~~lL~ 242 (330)
. ..++||+|+++.++++-.. ...+++.+.++++
T Consensus 125 ----------------~-~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 125 ----------------A-EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred ----------------c-cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 0 1257999999999988654 3467777777774
No 100
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.74 E-value=1.4e-07 Score=72.12 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=78.3
Q ss_pred eEEEEcCccCHHHHHHHH-hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccc
Q 020158 123 ISLELGAGTGLAGILLSR-VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER 201 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~-~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~ 201 (330)
+|+|+|||+|..+..++. ...+++++|.++.++..++++...+. ..++.+...++.+...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------- 61 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPP-------------- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhcc--------------
Confidence 589999999999988887 46899999999999998886544443 3567777777665421
Q ss_pred cccCccchhccCCeeEEEEeccccC-cccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 202 YSWNSSELKEVQRASVLLAADVIYS-DDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 202 ~~w~~~~~~~~~~~DlIlaaDviY~-~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
....++|+|++..+++. ......+++.+.++++++ +.+++.
T Consensus 62 --------~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~--g~~~~~ 103 (107)
T cd02440 62 --------EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPG--GVLVLT 103 (107)
T ss_pred --------ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCC--CEEEEE
Confidence 02357999999999998 889999999999999765 445443
No 101
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.73 E-value=6.4e-07 Score=81.01 Aligned_cols=116 Identities=11% Similarity=0.150 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCC----------CC
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVF----------SH 171 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~----------~~ 171 (330)
.-.|.+|+... ...++.+||++|||.|--++.+|.+|.+|++.|+++.+++.+.. .|+... ..
T Consensus 23 ~~~L~~~~~~~----~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~ 95 (218)
T PRK13255 23 NPLLQKYWPAL----ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQ 95 (218)
T ss_pred CHHHHHHHHhh----CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccc
Confidence 44566666432 12356799999999999999999999999999999999987642 221110 00
Q ss_pred CCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC--cccHHHHHHHHHHhccCCCC
Q 020158 172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL~~~~~ 246 (330)
..++++...|..+..+ .....||+|+..-++.. ++.-...++.|.++|++++.
T Consensus 96 ~~~v~~~~~D~~~l~~----------------------~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 96 AGEITIYCGDFFALTA----------------------ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred cCceEEEECcccCCCc----------------------ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 2345555555444311 01247899997776543 44667889999999988753
No 102
>PLN03075 nicotianamine synthase; Provisional
Probab=98.72 E-value=1.4e-07 Score=88.50 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=80.5
Q ss_pred CCCeEEEEcCc-cCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 120 NGIISLELGAG-TGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 120 ~g~~VLELG~G-tGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.+++|+|+||| .|+.++.+++. +.++++.|.++++++.+++++...... ..++++...|..+..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---~~rV~F~~~Da~~~~~-------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---SKRMFFHTADVMDVTE-------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---cCCcEEEECchhhccc--------
Confidence 77999999999 55888887754 468999999999999999999653221 4678998888765311
Q ss_pred CccccccccCccchhccCCeeEEEEeccccC-cccHHHHHHHHHHhccCCCCeEEEE
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYS-DDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~-~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
...+||+|+++=++|. ......+++.+.+.|++| +++++
T Consensus 192 ---------------~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPG--G~Lvl 231 (296)
T PLN03075 192 ---------------SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPG--ALLML 231 (296)
T ss_pred ---------------ccCCcCEEEEecccccccccHHHHHHHHHHhcCCC--cEEEE
Confidence 1357999999955565 489999999999999875 45555
No 103
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.71 E-value=5.7e-07 Score=90.25 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
..+++|||||||+|..+..+++.+.+|++.|+++.+++.++. .+.. ..++.+...|......+.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~----~~~i~~~~~d~~~~~~~~--------- 99 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH----YKNVKFMCADVTSPDLNI--------- 99 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc----CCceEEEEecccccccCC---------
Confidence 457799999999999999999998999999999999875433 3322 246777777764321100
Q ss_pred ccccccCccchhccCCeeEEEEeccccCccc--HHHHHHHHHHhccCCC
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGS 245 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~--~~~l~~tl~~lL~~~~ 245 (330)
...+||+|++..++++-.. ...+++.+.++|++++
T Consensus 100 ------------~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG 136 (475)
T PLN02336 100 ------------SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGG 136 (475)
T ss_pred ------------CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCe
Confidence 1257999999999987544 6789999999998763
No 104
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.67 E-value=2.8e-07 Score=88.25 Aligned_cols=114 Identities=13% Similarity=0.024 Sum_probs=81.6
Q ss_pred HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
.||..+.... ..-+|.+|||+|||||...+.++..+.+|+++|+++.|+..++.|+..++. .++.+...|..
T Consensus 169 ~la~~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~-----~~i~~~~~D~~ 240 (329)
T TIGR01177 169 KLARAMVNLA---RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI-----EDFFVKRGDAT 240 (329)
T ss_pred HHHHHHHHHh---CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC-----CCCeEEecchh
Confidence 4555555432 334678999999999999999888899999999999999999999988764 23556555544
Q ss_pred CCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC----------cccHHHHHHHHHHhccCCCCeEE
Q 020158 184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS----------DDLTDALFHTLKRLMPLGSKKVL 249 (330)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~----------~~~~~~l~~tl~~lL~~~~~~~i 249 (330)
+... ....||+|++.-. |. ......+++.+.+.|++++..++
T Consensus 241 ~l~~-----------------------~~~~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 241 KLPL-----------------------SSESVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred cCCc-----------------------ccCCCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 3210 1247999987422 21 13467899999999987754333
No 105
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.67 E-value=1e-07 Score=88.56 Aligned_cols=108 Identities=16% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCeEEEEcCccCH----HHHHHHHh-------CCeEEEEeCchHHHHHHHHHHHH----ccCC----------------
Q 020158 120 NGIISLELGAGTGL----AGILLSRV-------AWTVFLTDHGNYILDNCAKNVQL----NSGV---------------- 168 (330)
Q Consensus 120 ~g~~VLELG~GtGL----~gl~lA~~-------~~~V~~TD~~~~~L~~~~~Nv~~----N~~~---------------- 168 (330)
++.+|+++|||||- +++.++.. ..+|++||+++.||+.+++++-. ....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 45555543 25899999999999999876411 1100
Q ss_pred CC--CCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcc--cHHHHHHHHHHhccCC
Q 020158 169 FS--HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLG 244 (330)
Q Consensus 169 ~~--~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~--~~~~l~~tl~~lL~~~ 244 (330)
+. -...+.+...|-.+... ..++||+|+|..|+.+.. ....+++.+.+.|++|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-----------------------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-----------------------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-----------------------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 00 01245555555544311 135899999999987653 5568999999999775
Q ss_pred CCeEEEEE
Q 020158 245 SKKVLYLA 252 (330)
Q Consensus 245 ~~~~i~va 252 (330)
+.+++.
T Consensus 236 --G~L~lg 241 (264)
T smart00138 236 --GYLFLG 241 (264)
T ss_pred --eEEEEE
Confidence 556664
No 106
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.67 E-value=2.2e-07 Score=90.62 Aligned_cols=104 Identities=12% Similarity=0.075 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
..+.+|||||||+|..|+.+|..+.+|++.|+++.+++.+++|++.|+. .++.+...|..+...
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-----~~~~~~~~d~~~~~~----------- 295 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-----DNLSFAALDSAKFAT----------- 295 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHHHH-----------
Confidence 4568999999999999999998899999999999999999999999973 467777776543210
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEee
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALE 254 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~ 254 (330)
....+||+|+.. .=| ......+++.|..+ .++.++|++..
T Consensus 296 -----------~~~~~~D~vi~D-PPr-~G~~~~~l~~l~~~---~p~~ivyvsc~ 335 (374)
T TIGR02085 296 -----------AQMSAPELVLVN-PPR-RGIGKELCDYLSQM---APKFILYSSCN 335 (374)
T ss_pred -----------hcCCCCCEEEEC-CCC-CCCcHHHHHHHHhc---CCCeEEEEEeC
Confidence 011358987764 335 35566666666543 45689999763
No 107
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.67 E-value=2e-07 Score=82.61 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=77.0
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
...+|||||||+|..++.+|+. ..+|+++|+++.+++.+++|+..++. .++.+...|..+..+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni~~i~~d~~~~~~~--------- 81 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-----KNLHVLCGDANELLDK--------- 81 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCEEEEccCHHHHHHh---------
Confidence 4568999999999999999987 46899999999999999999987763 5788877776542110
Q ss_pred cccccccCccchhccCCeeEEEEe--ccccCcc------cHHHHHHHHHHhccCCCCeEEEEEee
Q 020158 198 SQERYSWNSSELKEVQRASVLLAA--DVIYSDD------LTDALFHTLKRLMPLGSKKVLYLALE 254 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaa--DviY~~~------~~~~l~~tl~~lL~~~~~~~i~va~~ 254 (330)
......+|.|+.. |.-+... ..+.+++.+.++|+++ +.++++..
T Consensus 82 -----------~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg--G~l~~~td 133 (194)
T TIGR00091 82 -----------FFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG--GVIHFKTD 133 (194)
T ss_pred -----------hCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC--CEEEEEeC
Confidence 0012368888865 2222111 1267999999999876 45666543
No 108
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.67 E-value=8.2e-08 Score=87.25 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=77.2
Q ss_pred EeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHH-HHHHHHHccCCCCCCCe
Q 020158 97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDN-CAKNVQLNSGVFSHQGS 174 (330)
Q Consensus 97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~-~~~Nv~~N~~~~~~~~~ 174 (330)
.+++++.-|...+... ...++|++|||+|||||..+..+++.| .+|++.|+++.++.. ++.|...-. ...
T Consensus 55 ~vsr~~~kL~~~l~~~---~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~-----~~~ 126 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF---NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV-----LER 126 (228)
T ss_pred hhhhhHHHHHHHHHhc---CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE-----eec
Confidence 6789999999988765 245799999999999999999999995 689999999876654 443322100 011
Q ss_pred eEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
..++.++|.+.++ +...+|++++|-.. .+..+..+|++ +..++++
T Consensus 127 ~ni~~~~~~~~~~-----------------------d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 127 TNIRYVTPADIFP-----------------------DFATFDVSFISLIS--------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCcccCCHhHcCC-----------------------CceeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEc
Confidence 2333555655421 12367777766433 46777888876 4444444
No 109
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.66 E-value=2.3e-07 Score=93.90 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=51.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
++.+|||+|||+|..++.++.. +.+|+++|+++.+++.++.|+..|+. ..++.+...||.+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~ 200 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFE 200 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhh
Confidence 3568999999999999988875 57999999999999999999998864 3567888877754
No 110
>PRK06922 hypothetical protein; Provisional
Probab=98.65 E-value=2.2e-07 Score=95.04 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
...+.+|||+|||+|..+..++.. +.+|+++|+++.|++.++.+...++ .++.+...|-.+... .
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~-~------ 482 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSS-S------ 482 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCcc-c------
Confidence 356889999999999988888765 5799999999999999998876543 234444444332100 0
Q ss_pred CccccccccCccchhccCCeeEEEEeccccC-------------cccHHHHHHHHHHhccCCCC
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYS-------------DDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~-------------~~~~~~l~~tl~~lL~~~~~ 246 (330)
+ ..++||+|+++-++++ ......+++.+.+.|++||.
T Consensus 483 -------------f-edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 483 -------------F-EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred -------------c-CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcE
Confidence 0 1357999998876642 24567889999999987643
No 111
>PHA03411 putative methyltransferase; Provisional
Probab=98.64 E-value=3.1e-07 Score=85.19 Aligned_cols=100 Identities=9% Similarity=-0.018 Sum_probs=70.1
Q ss_pred CCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
+.+|||+|||+|..++.++.. +.+|+++|+++.+++.+++|. .++.+...|..+..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~------------ 122 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFE------------ 122 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhc------------
Confidence 468999999999999988776 479999999999999998874 12344444432210
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcc---------c-----------HHHHHHHHHHhccCCCCeEEEEEeeee
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDD---------L-----------TDALFHTLKRLMPLGSKKVLYLALEKR 256 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~---------~-----------~~~l~~tl~~lL~~~~~~~i~va~~~R 256 (330)
...+||+||+...++... . +..+++....+|.+++ .+++++.-+
T Consensus 123 ------------~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G--~~~~~yss~ 186 (279)
T PHA03411 123 ------------SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTG--SAGFAYSGR 186 (279)
T ss_pred ------------ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCc--eEEEEEecc
Confidence 124799999988887621 1 3667777788887765 444444443
No 112
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.63 E-value=6.2e-07 Score=85.59 Aligned_cols=95 Identities=22% Similarity=0.187 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
..++.+|||+|||+|..++.+|+.. ..|++.|.++++++.+++|+..++. .++.+...|..+..+
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-----~nV~~i~gD~~~~~~------- 145 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-----ENVIFVCGDGYYGVP------- 145 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCChhhccc-------
Confidence 4467899999999999999998863 3699999999999999999988763 456666655433211
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
....||+|+.+-.+ +.+...+.+.|++++.
T Consensus 146 ----------------~~~~fD~Ii~~~g~------~~ip~~~~~~LkpgG~ 175 (322)
T PRK13943 146 ----------------EFAPYDVIFVTVGV------DEVPETWFTQLKEGGR 175 (322)
T ss_pred ----------------ccCCccEEEECCch------HHhHHHHHHhcCCCCE
Confidence 12469999976322 2233445667876643
No 113
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.63 E-value=6e-07 Score=77.63 Aligned_cols=61 Identities=16% Similarity=0.048 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
...+.+|||+|||+|..+..++..+.+|++.|+++.+++.+++|+.. ..++++...|..+.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~ 71 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKF 71 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcC
Confidence 34667999999999999999998888999999999999999999853 24677777776553
No 114
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.63 E-value=3.2e-07 Score=83.83 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.++++|||+|||+|..++.+|+. +.+|+++|+++++++.+++|++.++. ..++++...|..+..+..
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~~L~~l------ 136 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALSALDQL------ 136 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHH------
Confidence 56789999999999988888765 36999999999999999999999875 357888877765431100
Q ss_pred CccccccccCccchh--ccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 196 SASQERYSWNSSELK--EVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~--~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
.. ..++||+|+. |. +...+..++..+.+++++| +++++
T Consensus 137 -------------~~~~~~~~fD~Vfi-Da--~k~~y~~~~~~~~~ll~~G--G~ii~ 176 (234)
T PLN02781 137 -------------LNNDPKPEFDFAFV-DA--DKPNYVHFHEQLLKLVKVG--GIIAF 176 (234)
T ss_pred -------------HhCCCCCCCCEEEE-CC--CHHHHHHHHHHHHHhcCCC--eEEEE
Confidence 00 1257999875 22 1345567788888899775 45544
No 115
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.8e-07 Score=78.59 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=82.0
Q ss_pred echHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEE
Q 020158 99 WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVR 178 (330)
Q Consensus 99 W~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~ 178 (330)
|-++..+...|.+.. ..-+|.+|||+|||+|..+-++|+.+.+|+..+..+.+.+.+++|++..+ ..++.++
T Consensus 54 tis~P~~vA~m~~~L---~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg-----~~nV~v~ 125 (209)
T COG2518 54 TISAPHMVARMLQLL---ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLG-----YENVTVR 125 (209)
T ss_pred eecCcHHHHHHHHHh---CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcC-----CCceEEE
Confidence 334444444444432 55678999999999999999999998899999999999999999999887 3568888
Q ss_pred EecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 179 DLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 179 ~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
..|=...++ ...+||.|+..-.. +... +.+..-|++++.-++-+
T Consensus 126 ~gDG~~G~~-----------------------~~aPyD~I~Vtaaa--~~vP----~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 126 HGDGSKGWP-----------------------EEAPYDRIIVTAAA--PEVP----EALLDQLKPGGRLVIPV 169 (209)
T ss_pred ECCcccCCC-----------------------CCCCcCEEEEeecc--CCCC----HHHHHhcccCCEEEEEE
Confidence 887555433 23689998865333 2233 34445666665444434
No 116
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.60 E-value=1.8e-07 Score=92.76 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=76.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
-.+.+|||||||+|..++.+|+.+.+|++.|+++.+++.+++|+..|+. .++++...|+.+..+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~d~~~~l~~~--------- 356 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAGTLETVLPKQ--------- 356 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeCCHHHHHHHH---------
Confidence 3457999999999999999999989999999999999999999999973 57888877765421100
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
......||+|+.. .=+ ......+++.+.+ + +++.++|++.
T Consensus 357 ----------~~~~~~~D~vi~d-PPr-~G~~~~~l~~l~~-l--~~~~ivyvsc 396 (431)
T TIGR00479 357 ----------PWAGQIPDVLLLD-PPR-KGCAAEVLRTIIE-L--KPERIVYVSC 396 (431)
T ss_pred ----------HhcCCCCCEEEEC-cCC-CCCCHHHHHHHHh-c--CCCEEEEEcC
Confidence 0012468998853 223 2345666666665 3 3457888865
No 117
>PTZ00146 fibrillarin; Provisional
Probab=98.58 E-value=5.1e-06 Score=77.90 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=81.5
Q ss_pred cCeEeech--HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCC
Q 020158 94 VGLQVWKA--ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGV 168 (330)
Q Consensus 94 ~G~~vW~a--a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~ 168 (330)
+-+++|+- |.+-|..+ .-...-...++.+|||||||+|..+..+|... .+|++.|+++.+++.+...+..
T Consensus 105 ~eyR~w~p~rSKlaa~i~-~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---- 179 (293)
T PTZ00146 105 IEYRVWNPFRSKLAAAII-GGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---- 179 (293)
T ss_pred ceeeeeCCcccHHHHHHH-CCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh----
Confidence 34899986 33433333 22211134578899999999999999999873 5899999998877555443322
Q ss_pred CCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeE
Q 020158 169 FSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (330)
Q Consensus 169 ~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~ 248 (330)
..++.....|...+.. + ......+|+|++.- ..++....++..+.++|++++ .
T Consensus 180 ---r~NI~~I~~Da~~p~~--------------y------~~~~~~vDvV~~Dv--a~pdq~~il~~na~r~LKpGG--~ 232 (293)
T PTZ00146 180 ---RPNIVPIIEDARYPQK--------------Y------RMLVPMVDVIFADV--AQPDQARIVALNAQYFLKNGG--H 232 (293)
T ss_pred ---cCCCEEEECCccChhh--------------h------hcccCCCCEEEEeC--CCcchHHHHHHHHHHhccCCC--E
Confidence 1334444444332100 0 00124699997654 346666677888999998764 4
Q ss_pred EEEEeeeeC
Q 020158 249 LYLALEKRY 257 (330)
Q Consensus 249 i~va~~~R~ 257 (330)
++++.+.+.
T Consensus 233 ~vI~ika~~ 241 (293)
T PTZ00146 233 FIISIKANC 241 (293)
T ss_pred EEEEEeccc
Confidence 555555554
No 118
>PLN02672 methionine S-methyltransferase
Probab=98.57 E-value=3.9e-07 Score=98.40 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=63.9
Q ss_pred chHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCC--------
Q 020158 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVF-------- 169 (330)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~-------- 169 (330)
+-+..|++.+.... ...+++++|||||||+|.+++.+++.. .+|+++|+++++++.+++|+..|...-
T Consensus 100 peTE~lve~L~~~~--~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 100 DWSFTFYEGLNRHP--DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred hhHHHHHHHHHhcc--cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence 34566777753321 234678899999999999999999873 699999999999999999999985310
Q ss_pred ---CCCCeeEEEEecCCCC
Q 020158 170 ---SHQGSVHVRDLNWMNP 185 (330)
Q Consensus 170 ---~~~~~v~v~~ldW~~~ 185 (330)
....++.+...||.+.
T Consensus 178 ~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred ccccccccEEEEECchhhh
Confidence 0024688888888764
No 119
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.57 E-value=6.4e-07 Score=86.70 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=75.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcccc
Q 020158 121 GIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (330)
+.+|||||||+|..|+.+|+.+.+|++.|.++.+++.+++|+..|+. .++.+...|..+..+.. ..
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~d~~~~~~~~---------~~ 263 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRMSAEEFTQAM---------NG 263 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEcCHHHHHHHH---------hh
Confidence 34799999999999999999888999999999999999999999973 46777777765421100 00
Q ss_pred ccccCc-cchh-ccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeee
Q 020158 201 RYSWNS-SELK-EVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEK 255 (330)
Q Consensus 201 ~~~w~~-~~~~-~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~ 255 (330)
...|.. .... ....||+|+.--. .....+.+++.|.+ ++.++|++...
T Consensus 264 ~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~-----~~~ivYvsC~p 313 (353)
T TIGR02143 264 VREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA-----YERILYISCNP 313 (353)
T ss_pred ccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc-----CCcEEEEEcCH
Confidence 000000 0000 0113788776333 34556666666544 36799998644
No 120
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.56 E-value=9.8e-08 Score=85.99 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=72.1
Q ss_pred CeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccc
Q 020158 122 IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER 201 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~ 201 (330)
+.++|+|||+|.+++.+|.+=.+|++||.++.||+.+++--..+-.. .... ..++ ....
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~----t~~~-----ms~~------------~~v~ 93 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCH----TPST-----MSSD------------EMVD 93 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccccc----CCcc-----cccc------------cccc
Confidence 47999999999999999999899999999999999776432111100 0000 0000 0000
Q ss_pred cccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEee
Q 020158 202 YSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALE 254 (330)
Q Consensus 202 ~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~ 254 (330)
+ +...++.|+|+|+.++++.+ .+.|.+.+.++|++.++.+++-.+.
T Consensus 94 L------~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 94 L------LGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred c------cCCCcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 0 11236899999999999876 4788999999999876665555554
No 121
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.53 E-value=3.8e-07 Score=86.87 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=61.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHc-cCCCCCCCeeEEEEe-cCCCCCCCCccCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLN-SGVFSHQGSVHVRDL-NWMNPWPPIFSLGNS 195 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N-~~~~~~~~~v~v~~l-dW~~~~~~~~~~~~~ 195 (330)
++.+|||||||+|.+...++.. +.++++||+++.+++.++.|++.| +. ..++.++.- +-.+....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~------- 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKG------- 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhc-------
Confidence 4679999999999776666554 679999999999999999999999 54 356666431 11110000
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCccc
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDL 229 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~ 229 (330)
-....+.||+|+|.--+|....
T Consensus 183 ------------i~~~~~~fDlivcNPPf~~s~~ 204 (321)
T PRK11727 183 ------------IIHKNERFDATLCNPPFHASAA 204 (321)
T ss_pred ------------ccccCCceEEEEeCCCCcCcch
Confidence 0012358999999999887543
No 122
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.53 E-value=9.6e-07 Score=85.77 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=83.2
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
+..|.+++.... . ..+.+||||+||+|..|+.+|+.+.+|+++|.++.+++.+++|+..|+. .++.+...|
T Consensus 192 ~e~l~~~v~~~~---~-~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~d 262 (362)
T PRK05031 192 NEKMLEWALDAT---K-GSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-----DNVQIIRMS 262 (362)
T ss_pred HHHHHHHHHHHh---h-cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEECC
Confidence 445666665542 1 1235799999999999999999888999999999999999999999973 467777777
Q ss_pred CCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeee
Q 020158 182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEK 255 (330)
Q Consensus 182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~ 255 (330)
..+..+..... .......+. +. ...+||+|+. |.=| ....+.+++.|.+ ++.++|++...
T Consensus 263 ~~~~l~~~~~~----~~~~~~~~~--~~-~~~~~D~v~l-DPPR-~G~~~~~l~~l~~-----~~~ivyvSC~p 322 (362)
T PRK05031 263 AEEFTQAMNGV----REFNRLKGI--DL-KSYNFSTIFV-DPPR-AGLDDETLKLVQA-----YERILYISCNP 322 (362)
T ss_pred HHHHHHHHhhc----ccccccccc--cc-cCCCCCEEEE-CCCC-CCCcHHHHHHHHc-----cCCEEEEEeCH
Confidence 64421100000 000000000 00 0125898887 4435 4566666666654 35789998644
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=1.4e-06 Score=86.98 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=60.2
Q ss_pred eEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCC
Q 020158 96 LQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQ 172 (330)
Q Consensus 96 ~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~ 172 (330)
..+++.+-.++..++. ...|.+|||+|||+|..++.++.. +.+|++.|.++.+++.+++|+..++.
T Consensus 232 ~~vqd~~s~l~~~~l~------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~----- 300 (445)
T PRK14904 232 VSVQNPTQALACLLLN------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI----- 300 (445)
T ss_pred EEEeCHHHHHHHHhcC------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----
Confidence 4688765555555432 356789999999999988888765 36899999999999999999998763
Q ss_pred CeeEEEEecCCC
Q 020158 173 GSVHVRDLNWMN 184 (330)
Q Consensus 173 ~~v~v~~ldW~~ 184 (330)
.++.+...|...
T Consensus 301 ~~v~~~~~Da~~ 312 (445)
T PRK14904 301 TIIETIEGDARS 312 (445)
T ss_pred CeEEEEeCcccc
Confidence 457777766544
No 124
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.50 E-value=7.1e-07 Score=78.90 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=63.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 120 NGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
.+.+|||+|||+|..+..++.. +.+++++|+++++++.++.+ .+.+...|..+..+..
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~--------- 71 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAF--------- 71 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhccccc---------
Confidence 5679999999999988888755 56889999999988876531 1234444433211000
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhc
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLM 241 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL 241 (330)
...+||+|+++.++++......+++.+.+.+
T Consensus 72 ------------~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~ 102 (194)
T TIGR02081 72 ------------PDKSFDYVILSQTLQATRNPEEILDEMLRVG 102 (194)
T ss_pred ------------CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhC
Confidence 1257999999999998888888877777665
No 125
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.49 E-value=3.4e-06 Score=73.71 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=77.5
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
..-+|.+++|+|||||-+++-+|.. ..+|++.|.++++++.+++|++..+ ..++.+.+.+--+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~Ap~~--------- 96 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDAPEA--------- 96 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccchHh---------
Confidence 4457889999999999999999965 4799999999999999999999988 37788887763332
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
+.....+|.|+-.-- ...+.+++++...|++++.
T Consensus 97 --------------L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggr 130 (187)
T COG2242 97 --------------LPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGR 130 (187)
T ss_pred --------------hcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCe
Confidence 112236888875543 5788999999999988754
No 126
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=8.7e-07 Score=81.27 Aligned_cols=84 Identities=20% Similarity=0.141 Sum_probs=63.4
Q ss_pred cCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCC
Q 020158 94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSH 171 (330)
Q Consensus 94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~ 171 (330)
+-..-|+... +.+++.....+...+++..+||+|||+|..|+.++.. -.+|+++|.++.++.++.+|++.+..
T Consensus 123 VlIPRpETEE-~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l---- 197 (328)
T KOG2904|consen 123 VLIPRPETEE-WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL---- 197 (328)
T ss_pred eeecCccHHH-HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh----
Confidence 3344565544 4455554433345677889999999999999988875 36899999999999999999999986
Q ss_pred CCeeEEEEecC
Q 020158 172 QGSVHVRDLNW 182 (330)
Q Consensus 172 ~~~v~v~~ldW 182 (330)
.+.+.+..++.
T Consensus 198 ~g~i~v~~~~m 208 (328)
T KOG2904|consen 198 SGRIEVIHNIM 208 (328)
T ss_pred cCceEEEeccc
Confidence 57888885543
No 127
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.49 E-value=5.7e-07 Score=79.00 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=64.7
Q ss_pred CCCeEEEEcCccCH-HHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 120 NGIISLELGAGTGL-AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 120 ~g~~VLELG~GtGL-~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
.|.+|||||||.|- ........+.+.++.|++++.+..|.+ ..+.|.+.|..+..+.-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~------------rGv~Viq~Dld~gL~~f--------- 71 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA------------RGVSVIQGDLDEGLADF--------- 71 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH------------cCCCEEECCHHHhHhhC---------
Confidence 56899999999994 444444457899999999876655542 34567888877753211
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHh
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRL 240 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~l 240 (330)
..++||+||.++++-....++.+++.+.+.
T Consensus 72 ------------~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 72 ------------PDQSFDYVILSQTLQAVRRPDEVLEEMLRV 101 (193)
T ss_pred ------------CCCCccEEehHhHHHhHhHHHHHHHHHHHh
Confidence 346899999999999888888887766555
No 128
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=5.1e-06 Score=72.02 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=50.9
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccC
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSG 167 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~ 167 (330)
.+++|.+-|......-.....+-+||||||+|.++-.+++. ....++||+||.+++...+.+..|+.
T Consensus 24 DTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~ 93 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV 93 (209)
T ss_pred hhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC
Confidence 45677776665431001112567999999999999988887 36799999999999999999999974
No 129
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=3.8e-06 Score=83.76 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
.+|.+|||+|||+|..++.++.. ..+|++.|+++.+++.+++|+..++. .++.+...|+.+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~ 312 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARK 312 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCccc
Confidence 45789999999999999988876 36899999999999999999998873 457887777655
No 130
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=2.8e-06 Score=84.33 Aligned_cols=59 Identities=20% Similarity=0.027 Sum_probs=49.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
.+|.+|||+|||+|..++.++..+ .+|++.|.++.+++.+++|+..++. .+.+...|..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~ 303 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDAR 303 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcc
Confidence 468899999999999999988874 5999999999999999999998763 2455555543
No 131
>PRK04457 spermidine synthase; Provisional
Probab=98.46 E-value=7.9e-07 Score=82.59 Aligned_cols=102 Identities=11% Similarity=0.156 Sum_probs=73.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
++++|||||||+|..+..+++. +.+|++.|+++++++.+++++..+.. ..++++...|..+...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~----~~rv~v~~~Da~~~l~---------- 131 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN----GERFEVIEADGAEYIA---------- 131 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC----CCceEEEECCHHHHHH----------
Confidence 4679999999999999888776 46899999999999999999866532 3567777666433210
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcc------cHHHHHHHHHHhccCCCCeEEEE
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDD------LTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~------~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
....+||+|+. |. |+.. .+..+++.+.++|+++ +++++
T Consensus 132 ------------~~~~~yD~I~~-D~-~~~~~~~~~l~t~efl~~~~~~L~pg--Gvlvi 175 (262)
T PRK04457 132 ------------VHRHSTDVILV-DG-FDGEGIIDALCTQPFFDDCRNALSSD--GIFVV 175 (262)
T ss_pred ------------hCCCCCCEEEE-eC-CCCCCCccccCcHHHHHHHHHhcCCC--cEEEE
Confidence 01247999986 43 3322 3479999999999875 44444
No 132
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.45 E-value=1.2e-06 Score=77.35 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=72.2
Q ss_pred eEEEEcCccCHHHHHHH-HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeE-EEEecCCCCCCCCccCCCCCcccc
Q 020158 123 ISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH-VRDLNWMNPWPPIFSLGNSSASQE 200 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA-~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~-v~~ldW~~~~~~~~~~~~~~~~~~ 200 (330)
.|||+|||||--=-..- ..+.+|++.|-++.|-+.+.+.+..|.. .++. +...+ ++..++.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-----~~~~~fvva~-ge~l~~l----------- 141 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-----LQVERFVVAD-GENLPQL----------- 141 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-----cceEEEEeec-hhcCccc-----------
Confidence 57999999994332222 2267999999999999999999999863 4444 33332 2222211
Q ss_pred ccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 201 ~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
..+++|+|+++=|+-+.......++.+.++|+|++
T Consensus 142 ----------~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG 176 (252)
T KOG4300|consen 142 ----------ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGG 176 (252)
T ss_pred ----------ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCc
Confidence 34689999999999999999999999999998863
No 133
>PHA03412 putative methyltransferase; Provisional
Probab=98.45 E-value=1.6e-06 Score=78.82 Aligned_cols=91 Identities=7% Similarity=0.005 Sum_probs=65.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh-----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV-----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~-----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
.+.+|||+|||+|.+++.+++. ..+|++.|+++.+++.+++|+. .+.+...|.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~-------- 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTE-------- 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhccc--------
Confidence 4679999999999999998874 3589999999999999998852 2334444433210
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCc------------ccHHHHHHHHHHhccCC
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSD------------DLTDALFHTLKRLMPLG 244 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~------------~~~~~l~~tl~~lL~~~ 244 (330)
...+||+||++-..+.. ..+..|++...+|+++|
T Consensus 111 ----------------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 111 ----------------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred ----------------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 12479999998777632 23566777777877554
No 134
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.43 E-value=2.4e-06 Score=80.95 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=72.7
Q ss_pred CCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.+.+|||||||||.....++.. +.+|++.|++++||+.+++++..... ..++.....|..+..+..
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~~~~~~~------- 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFTQPLALP------- 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEcccchhhhh-------
Confidence 5689999999999888777766 57999999999999999999875431 234555555654421100
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCc--ccHHHHHHHHHHhccCCCCeEEEEEeeee
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKVLYLALEKR 256 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~--~~~~~l~~tl~~lL~~~~~~~i~va~~~R 256 (330)
.. . ......+++..-.+++. +....+++.+.+.|+++ +.+++....+
T Consensus 132 ---------~~-~-~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg--G~~lig~d~~ 180 (301)
T TIGR03438 132 ---------PE-P-AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG--GGLLIGVDLV 180 (301)
T ss_pred ---------cc-c-ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC--CEEEEeccCC
Confidence 00 0 00122334444466653 45667899999999765 4566554333
No 135
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.40 E-value=2e-06 Score=84.11 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=71.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 121 GIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
+.+|||++||+|..|+.+|... .+|++.|+++.+++.+++|++.|+. .++.+...|....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-----~~~~v~~~Da~~~------------- 119 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-----ENEKVFNKDANAL------------- 119 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CceEEEhhhHHHH-------------
Confidence 4689999999999999998763 4899999999999999999999984 3344555443221
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
+.....||+|+. |. | ....++++..-..+++ +++++++
T Consensus 120 ----------l~~~~~fD~V~l-DP-~--Gs~~~~l~~al~~~~~--~gilyvS 157 (382)
T PRK04338 120 ----------LHEERKFDVVDI-DP-F--GSPAPFLDSAIRSVKR--GGLLCVT 157 (382)
T ss_pred ----------HhhcCCCCEEEE-CC-C--CCcHHHHHHHHHHhcC--CCEEEEE
Confidence 000246999987 66 3 5556777774344543 5788887
No 136
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.40 E-value=3.8e-06 Score=78.25 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=59.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC-----CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRVA-----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~-----~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
.+.+|||+|||+|..+..++... .+|+++|+++.+++.++++. .++.+...|..+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp-------- 146 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLP-------- 146 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCC--------
Confidence 45789999999999888877652 37999999999999987652 23444444433210
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
+ ..+.||+|++. +.+ ..++.+.++|+++|
T Consensus 147 --------------~-~~~sfD~I~~~---~~~----~~~~e~~rvLkpgG 175 (272)
T PRK11088 147 --------------F-ADQSLDAIIRI---YAP----CKAEELARVVKPGG 175 (272)
T ss_pred --------------C-cCCceeEEEEe---cCC----CCHHHHHhhccCCC
Confidence 0 12479999974 333 34577888998764
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.39 E-value=6.4e-06 Score=81.73 Aligned_cols=61 Identities=15% Similarity=0.034 Sum_probs=50.2
Q ss_pred chHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccC
Q 020158 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSG 167 (330)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~ 167 (330)
.+|..++.++ ...+|.+|||+|||+|..++.++.. ..+|++.|.++.+++.+++|++.++.
T Consensus 225 ~~s~~~~~~L-------~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~ 287 (426)
T TIGR00563 225 ASAQWVATWL-------APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL 287 (426)
T ss_pred HHHHHHHHHh-------CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4566666655 2346789999999999999998876 36999999999999999999998763
No 138
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.39 E-value=2.3e-06 Score=79.25 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=57.0
Q ss_pred HHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecC
Q 020158 103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW 182 (330)
Q Consensus 103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW 182 (330)
.-+++.+.+.. ...++.+|||+|||+|..++.+++.+.+|++.|+++.+++.++.|+.. ..++.+...|.
T Consensus 15 ~~~~~~iv~~~---~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~ 84 (258)
T PRK14896 15 DRVVDRIVEYA---EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDA 84 (258)
T ss_pred HHHHHHHHHhc---CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEecc
Confidence 33455565543 445788999999999999999999988999999999999999988743 14677777776
Q ss_pred CC
Q 020158 183 MN 184 (330)
Q Consensus 183 ~~ 184 (330)
.+
T Consensus 85 ~~ 86 (258)
T PRK14896 85 LK 86 (258)
T ss_pred cc
Confidence 54
No 139
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.39 E-value=5.7e-06 Score=80.56 Aligned_cols=107 Identities=12% Similarity=0.113 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
..+..+||||||+|...+.+|+. ...+++.|+++.++..+.+++..++ ..++.+...|.......
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-----L~NV~~i~~DA~~ll~~-------- 187 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-----LKNLLIINYDARLLLEL-------- 187 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHhhhh--------
Confidence 34679999999999999999987 4799999999999999999998887 35688887775432110
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcc------cHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDD------LTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~------~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
+ ..+.+|.|+..=...++. ..+.+++.+.++|++| +.++++.
T Consensus 188 ------------~-~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG--G~l~l~T 235 (390)
T PRK14121 188 ------------L-PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPG--GTLELRT 235 (390)
T ss_pred ------------C-CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCC--cEEEEEE
Confidence 0 235789988642221111 2378999999999875 4566643
No 140
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.38 E-value=7.1e-06 Score=76.27 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=50.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
..|.+|||+|||+|-.++.+|.. ...|++.|+++.+++.+++|++.++. .++.+...|..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~ 132 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGR 132 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHH
Confidence 46789999999999999888775 35899999999999999999999873 45677666643
No 141
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.38 E-value=3.7e-06 Score=83.60 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.+|.+|||+|||+|..++.+|.. ..+|++.|+++.+++.+++|+..++. .++.+...|-.+.....
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~~------ 319 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLELK------ 319 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhccccc------
Confidence 46789999999999999988876 25899999999999999999999873 45777766644321000
Q ss_pred CccccccccCccchhccCCeeEEEEe------ccccCcc----------------cHHHHHHHHHHhccCCCCeEEEE
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAA------DVIYSDD----------------LTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaa------DviY~~~----------------~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
....+.||.|+.- .++.... ....++..+.++|++|| .++|.
T Consensus 320 -------------~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG-~lvys 383 (434)
T PRK14901 320 -------------PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGG-TLVYA 383 (434)
T ss_pred -------------ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCC-EEEEE
Confidence 0012479999852 2222211 24677888888888763 44554
No 142
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.36 E-value=3.7e-06 Score=75.50 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=73.4
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CC--eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~~--~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v 177 (330)
++..+...+++.. ..-+|.+|||+|||+|..+-++|.+ +. +|+..|..+.+.+.+++|+...+ ..++.+
T Consensus 56 s~P~~~a~~l~~L---~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~ 127 (209)
T PF01135_consen 56 SAPSMVARMLEAL---DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEV 127 (209)
T ss_dssp --HHHHHHHHHHT---TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEE
T ss_pred hHHHHHHHHHHHH---hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeE
Confidence 4444444455553 4568899999999999999999887 43 69999999999999999999887 357888
Q ss_pred EEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
...|-... | ....+||.|+..-.+. ..... +.+.|++| +.+++.
T Consensus 128 ~~gdg~~g------------------~-----~~~apfD~I~v~~a~~--~ip~~----l~~qL~~g--GrLV~p 171 (209)
T PF01135_consen 128 VVGDGSEG------------------W-----PEEAPFDRIIVTAAVP--EIPEA----LLEQLKPG--GRLVAP 171 (209)
T ss_dssp EES-GGGT------------------T-----GGG-SEEEEEESSBBS--S--HH----HHHTEEEE--EEEEEE
T ss_pred EEcchhhc------------------c-----ccCCCcCEEEEeeccc--hHHHH----HHHhcCCC--cEEEEE
Confidence 77763322 1 1335899999875553 33333 44556665 444443
No 143
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.36 E-value=3.6e-06 Score=73.03 Aligned_cols=136 Identities=18% Similarity=0.246 Sum_probs=87.1
Q ss_pred Eeec---hHHHHHHHHhhhcCCCCCCCCC-eEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCC
Q 020158 97 QVWK---AELVLADFVMHKMCTSSDFNGI-ISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFS 170 (330)
Q Consensus 97 ~vW~---aa~~La~~l~~~~~~~~~~~g~-~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~ 170 (330)
-+|= +...+.+|+..+......-+.. +|||||||.|..=.-+++-+ ...+++||++.++++++.-++.++.
T Consensus 40 EvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~--- 116 (227)
T KOG1271|consen 40 EVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF--- 116 (227)
T ss_pred ceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC---
Confidence 4563 4567788887764100112233 99999999998888888876 3599999999999997776777764
Q ss_pred CCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEe---cccc-C----cccHHHHHHHHHHhcc
Q 020158 171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAA---DVIY-S----DDLTDALFHTLKRLMP 242 (330)
Q Consensus 171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaa---DviY-~----~~~~~~l~~tl~~lL~ 242 (330)
...+++..+|...+.- ..++||+|+-- |.|- + ..-...-+.++.++|+
T Consensus 117 -~n~I~f~q~DI~~~~~-----------------------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~ 172 (227)
T KOG1271|consen 117 -SNEIRFQQLDITDPDF-----------------------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS 172 (227)
T ss_pred -CcceeEEEeeccCCcc-----------------------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC
Confidence 3559999999877511 12466666631 1110 0 0111445778899998
Q ss_pred CCCCeEEEEEeeeeCcccccch
Q 020158 243 LGSKKVLYLALEKRYNFSLNDL 264 (330)
Q Consensus 243 ~~~~~~i~va~~~R~~f~~~~~ 264 (330)
++ +++++. .-|||.++|
T Consensus 173 ~~--gifvIt---SCN~T~dEL 189 (227)
T KOG1271|consen 173 PG--GIFVIT---SCNFTKDEL 189 (227)
T ss_pred CC--cEEEEE---ecCccHHHH
Confidence 65 455552 246665544
No 144
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.36 E-value=2.3e-06 Score=80.44 Aligned_cols=100 Identities=16% Similarity=0.311 Sum_probs=80.3
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 116 SSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
..+|+|+.|||+|||.|++++.+|..| ++|++++.+ +|.+.+++-++.|.. ..++.|.....++
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~----~~rItVI~GKiEd---------- 237 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL----ADRITVIPGKIED---------- 237 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc----cceEEEccCcccc----------
Confidence 478999999999999999999999996 699999997 899999999988854 5788888776554
Q ss_pred CCccccccccCccchhccCCeeEEEEec---cccCcccHHHHHHHHHHhccCCC
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAAD---VIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaD---viY~~~~~~~l~~tl~~lL~~~~ 245 (330)
++..++.|+||.-- .+|+...++.-+.+= +.|+|++
T Consensus 238 --------------ieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~G 276 (517)
T KOG1500|consen 238 --------------IELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNG 276 (517)
T ss_pred --------------ccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCC
Confidence 33557899999643 567777777766654 7787764
No 145
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.35 E-value=1.5e-06 Score=77.37 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.-+..+|.|||||+|...-.++++ ++.|++.|-|++||+.++... .++++...|-.+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~----------- 86 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRT----------- 86 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhh-----------
Confidence 445679999999999777777766 789999999999999886432 445555444332
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
|. ....+|+|+++-++.+-..+..++.-+-..|.+|
T Consensus 87 --------w~-----p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pg 122 (257)
T COG4106 87 --------WK-----PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPG 122 (257)
T ss_pred --------cC-----CCCccchhhhhhhhhhccccHHHHHHHHHhhCCC
Confidence 21 2357999999999999999999998888888776
No 146
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.34 E-value=7.8e-06 Score=73.41 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=63.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
..+|.+|||||||||..+..+++.. .+|+++|+++ + +. ..++.+...|+.+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~-----~~~v~~i~~D~~~~~~~------ 106 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DP-----IVGVDFLQGDFRDELVL------ 106 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cC-----CCCcEEEecCCCChHHH------
Confidence 3568899999999999998888773 5899999986 1 11 23477888887763100
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCcc-----------cHHHHHHHHHHhccCCC
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDD-----------LTDALFHTLKRLMPLGS 245 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~-----------~~~~l~~tl~~lL~~~~ 245 (330)
... . ......+||+|++.-+.+... .+..+++.+.++|++|+
T Consensus 107 -----~~i---~-~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG 159 (209)
T PRK11188 107 -----KAL---L-ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGG 159 (209)
T ss_pred -----HHH---H-HHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 000 0 000135799999855444322 13568899999998764
No 147
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.33 E-value=9.9e-06 Score=80.49 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
.+|.+|||+|||+|--++.+|.. +.+|++.|+++.+++.+++|+...+. .++.+...|+..
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~ 299 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAER 299 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhh
Confidence 46789999999999988888876 46999999999999999999998763 457777777654
No 148
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.33 E-value=4.3e-06 Score=75.33 Aligned_cols=103 Identities=7% Similarity=-0.002 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE-ecCCCCCCCCccCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD-LNWMNPWPPIFSLGN 194 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~-ldW~~~~~~~~~~~~ 194 (330)
...++|||+|.++|..++.+|.. ..+++.+|++++..+.+++|+..-+. ..++.+.. +|+.+....
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~----~~~i~~~~~gdal~~l~~------ 127 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV----DDRIELLLGGDALDVLSR------ 127 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC----cceEEEEecCcHHHHHHh------
Confidence 47799999999999999999986 25899999999999999999999875 35576666 566654211
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
...++||+|+. =-+....+.++..+.++|++| +++++
T Consensus 128 ---------------~~~~~fDliFI---DadK~~yp~~le~~~~lLr~G--Gliv~ 164 (219)
T COG4122 128 ---------------LLDGSFDLVFI---DADKADYPEYLERALPLLRPG--GLIVA 164 (219)
T ss_pred ---------------ccCCCccEEEE---eCChhhCHHHHHHHHHHhCCC--cEEEE
Confidence 12468999884 134667888999999999875 34443
No 149
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.32 E-value=3.3e-06 Score=79.74 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=59.2
Q ss_pred HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
..++.+.... ....+.+|||+|||+|..+..++..+.+|++.|+++.+++.+++|+..++. ..++++...|+.
T Consensus 23 ~i~~~Iv~~~---~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~----~~~v~ii~~Dal 95 (294)
T PTZ00338 23 LVLDKIVEKA---AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL----ASKLEVIEGDAL 95 (294)
T ss_pred HHHHHHHHhc---CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECCHh
Confidence 3445555543 345678999999999999999998888999999999999999999987542 357888888765
Q ss_pred C
Q 020158 184 N 184 (330)
Q Consensus 184 ~ 184 (330)
+
T Consensus 96 ~ 96 (294)
T PTZ00338 96 K 96 (294)
T ss_pred h
Confidence 5
No 150
>PLN02476 O-methyltransferase
Probab=98.32 E-value=5.4e-06 Score=77.40 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=74.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
..+.++|||+|+|+|..++.+|.. ..+|+..|.+++.++.+++|++.++. ..++++...+..+..+..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~li~GdA~e~L~~l----- 186 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNVKHGLAAESLKSM----- 186 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHHH-----
Confidence 356799999999999999999975 35799999999999999999999875 357777766544321100
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
. . -....+||+|+.- -+...+...++.+.++|++|
T Consensus 187 --------~--~--~~~~~~FD~VFID---a~K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 187 --------I--Q--NGEGSSYDFAFVD---ADKRMYQDYFELLLQLVRVG 221 (278)
T ss_pred --------H--h--cccCCCCCEEEEC---CCHHHHHHHHHHHHHhcCCC
Confidence 0 0 0012479988742 12567788888888999765
No 151
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.31 E-value=1.3e-05 Score=73.57 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
..+..++||||||.|-+...+|..-.+|++|+.++.|...+++ -+ --.+...+|.+.
T Consensus 92 ~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg-------~~vl~~~~w~~~------------ 148 (265)
T PF05219_consen 92 DWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KG-------FTVLDIDDWQQT------------ 148 (265)
T ss_pred cccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CC-------CeEEehhhhhcc------------
Confidence 3567899999999999999999988899999999888665552 11 112233446542
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeeee
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEKR 256 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~R 256 (330)
..+||+|.|-.|+=..+....|++.|++.|++++..++-+.++-|
T Consensus 149 --------------~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~ 193 (265)
T PF05219_consen 149 --------------DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFR 193 (265)
T ss_pred --------------CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEeccc
Confidence 247999999999999999999999999999886544433444444
No 152
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.30 E-value=8.2e-06 Score=76.17 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=55.8
Q ss_pred HHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
+++.+.... ...++.+|||+|||+|..+..++..+.+|+++|+++.+++.+++|+.. .++.+...|+.+
T Consensus 30 i~~~i~~~l---~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~ 98 (272)
T PRK00274 30 ILDKIVDAA---GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALK 98 (272)
T ss_pred HHHHHHHhc---CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhc
Confidence 345555543 345678999999999999999999988999999999999999887631 467888888776
Q ss_pred C
Q 020158 185 P 185 (330)
Q Consensus 185 ~ 185 (330)
.
T Consensus 99 ~ 99 (272)
T PRK00274 99 V 99 (272)
T ss_pred C
Confidence 4
No 153
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.28 E-value=2.7e-06 Score=76.18 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.+.++|||+|+|+|..++.+|.. +.+|+..|.+++..+.+++|+...+. ..++++...|..+..+..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~~~l~~l------ 113 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDALEVLPEL------ 113 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HHHHHHHH------
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccHhhHHHH------
Confidence 56789999999999999999976 57999999999999999999998774 468888887655421100
Q ss_pred CccccccccCccchhc--cCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 196 SASQERYSWNSSELKE--VQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~--~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
... .++||+|+.-- +.......+..+.++|++| +++++
T Consensus 114 -------------~~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~~g--gvii~ 153 (205)
T PF01596_consen 114 -------------ANDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLRPG--GVIIA 153 (205)
T ss_dssp -------------HHTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEEEE--EEEEE
T ss_pred -------------HhccCCCceeEEEEcc---cccchhhHHHHHhhhccCC--eEEEE
Confidence 001 24799988532 4667778888888999764 45544
No 154
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.25 E-value=1.5e-06 Score=76.47 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
+.|.+||||=||+|..|+-+..+| ++|++.|.++..+..+++|++.-+. ...+.+...|.......
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~~~d~~~~l~~--------- 107 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVIKGDAFKFLLK--------- 107 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSHHHHHHH---------
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC----CcceeeeccCHHHHHHh---------
Confidence 789999999999999999888775 6999999999999999999987653 34567666664332100
Q ss_pred cccccccCccchhccCCeeEEEEeccccCccc-HHHHHHHHH--HhccCCCCeEEEEEeeee
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDL-TDALFHTLK--RLMPLGSKKVLYLALEKR 256 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~-~~~l~~tl~--~lL~~~~~~~i~va~~~R 256 (330)
......+||+|+ .|.=|.... ...++..|. .+|+ .++++++-+.++
T Consensus 108 ----------~~~~~~~fDiIf-lDPPY~~~~~~~~~l~~l~~~~~l~--~~~~ii~E~~~~ 156 (183)
T PF03602_consen 108 ----------LAKKGEKFDIIF-LDPPYAKGLYYEELLELLAENNLLN--EDGLIIIEHSKK 156 (183)
T ss_dssp ----------HHHCTS-EEEEE-E--STTSCHHHHHHHHHHHHTTSEE--EEEEEEEEEETT
T ss_pred ----------hcccCCCceEEE-ECCCcccchHHHHHHHHHHHCCCCC--CCEEEEEEecCC
Confidence 001246899886 567777776 488888877 5664 356777765555
No 155
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.23 E-value=7.6e-06 Score=72.80 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=92.9
Q ss_pred eEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcccc
Q 020158 123 ISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (330)
+|||||||||--+...|+. .-+..-||+++..+..++..+...+.. ....-..+|-....-
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~----Nv~~P~~lDv~~~~w------------- 90 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP----NVRPPLALDVSAPPW------------- 90 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc----ccCCCeEeecCCCCC-------------
Confidence 6999999999888888876 568999999998888888888776532 111223344333210
Q ss_pred ccccCccchhccCCeeEEEEeccccCc--ccHHHHHHHHHHhccCCCCeEEEEEeeeeCcccccchhhhccccchhhhhh
Q 020158 201 RYSWNSSELKEVQRASVLLAADVIYSD--DLTDALFHTLKRLMPLGSKKVLYLALEKRYNFSLNDLDVVANGYSHFRSYI 278 (330)
Q Consensus 201 ~~~w~~~~~~~~~~~DlIlaaDviY~~--~~~~~l~~tl~~lL~~~~~~~i~va~~~R~~f~~~~~d~v~~~y~~f~~~l 278 (330)
.|..........||.|+++.+++-. ..++.|++...++|++++..++|=.+.....+| .++-..|...|
T Consensus 91 --~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t-------s~SN~~FD~sL 161 (204)
T PF06080_consen 91 --PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT-------SESNAAFDASL 161 (204)
T ss_pred --ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC-------CcHHHHHHHHH
Confidence 0100000123589999999999874 578999999999998876555554444444443 34456788888
Q ss_pred hhhhccccc
Q 020158 279 MEEGEHRRF 287 (330)
Q Consensus 279 ~~~~~~~~~ 287 (330)
+.++..-++
T Consensus 162 r~rdp~~Gi 170 (204)
T PF06080_consen 162 RSRDPEWGI 170 (204)
T ss_pred hcCCCCcCc
Confidence 876643333
No 156
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.22 E-value=2.6e-05 Score=71.17 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=86.9
Q ss_pred CcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--C------CeEEEEeCchHHHHHHHHHHHH
Q 020158 93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--A------WTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~--~------~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
..++++|.. .+..++ ...++.+|||++||||-++.-+.+. . .+|++.|++|+||+..++....
T Consensus 82 lGiHRlWKd--~~v~~L-------~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 82 LGIHRLWKD--MFVSKL-------GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred cchhHHHHH--Hhhhcc-------CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 456788832 222322 4567899999999999988888776 2 6899999999999999988866
Q ss_pred ccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 165 NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 165 N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
-. ... ..++.+...|-.+.+ + +...||....|==|-+-.+.+..++...+.|++|
T Consensus 153 ~~-l~~-~~~~~w~~~dAE~Lp----------------------F-dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 153 RP-LKA-SSRVEWVEGDAEDLP----------------------F-DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred cC-CCc-CCceEEEeCCcccCC----------------------C-CCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 32 211 233555554433321 0 2357999888888888899999999999999988
Q ss_pred CC
Q 020158 245 SK 246 (330)
Q Consensus 245 ~~ 246 (330)
+.
T Consensus 208 Gr 209 (296)
T KOG1540|consen 208 GR 209 (296)
T ss_pred cE
Confidence 64
No 157
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.22 E-value=5.2e-06 Score=74.00 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCccCHHHHHHHH--hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR--VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~--~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
-+|.+|+|+-||.|..++.+|+ .++.|++.|++|..++.+++|+.+|+. ...+.+...|..+..+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~--------- 166 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP--------- 166 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG------------
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC---------
Confidence 4688999999999999999999 578999999999999999999999986 4678888888655421
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
...+|-|++.-. .....++.....+++.+
T Consensus 167 ---------------~~~~drvim~lp----~~~~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 167 ---------------EGKFDRVIMNLP----ESSLEFLDAALSLLKEG 195 (200)
T ss_dssp ---------------TT-EEEEEE--T----SSGGGGHHHHHHHEEEE
T ss_pred ---------------ccccCEEEECCh----HHHHHHHHHHHHHhcCC
Confidence 357999988643 33445666666777543
No 158
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.21 E-value=1.2e-05 Score=71.84 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=67.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
++.-|||+|||+||.|-++..-|..+++.|+++.||+.+... +.-+ .+.-.|.+...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg---------dlil~DMG~Glpf----------- 108 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG---------DLILCDMGEGLPF----------- 108 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhhc---------CeeeeecCCCCCC-----------
Confidence 678899999999999999999999999999999999998851 1112 2344555554332
Q ss_pred cccccCccchhccCCeeEEEE---------eccccCcc--cHHHHHHHHHHhccCCCCeEE
Q 020158 200 ERYSWNSSELKEVQRASVLLA---------ADVIYSDD--LTDALFHTLKRLMPLGSKKVL 249 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIla---------aDviY~~~--~~~~l~~tl~~lL~~~~~~~i 249 (330)
..+.||-+|. ||--|+.. -+-.|+.||..+|++++.+++
T Consensus 109 -----------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 109 -----------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred -----------CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 1346775554 33333322 234578889999987765544
No 159
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.20 E-value=2.6e-05 Score=76.12 Aligned_cols=112 Identities=15% Similarity=0.054 Sum_probs=81.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCC-eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~-~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
..+|++||+|=|=||-.|+.+|..|+ +|+.+|.+...|+.+++|+++|+.. ..++.+...|-.+
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~---~~~~~~i~~Dvf~------------ 279 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD---GDRHRFIVGDVFK------------ 279 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC---ccceeeehhhHHH------------
Confidence 35699999999999999999999987 9999999999999999999999964 2344554444222
Q ss_pred ccccccccCccchhccCCeeEEEEeccccC---------cccHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYS---------DDLTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~---------~~~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
|-+.......+||+||.=-.-|- ...+..|+..+.++|+++ ++++++.
T Consensus 280 -------~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg--G~l~~~s 336 (393)
T COG1092 280 -------WLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG--GTLVTSS 336 (393)
T ss_pred -------HHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC--CEEEEEe
Confidence 21222234468999997544443 236777888888889765 4555543
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.18 E-value=1.4e-05 Score=79.55 Aligned_cols=122 Identities=15% Similarity=0.197 Sum_probs=81.0
Q ss_pred CCcCeEeechHHHHH--HHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC------CeEEEEeCchHHHHHHHHHHH
Q 020158 92 PSVGLQVWKAELVLA--DFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA------WTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 92 ~~~G~~vW~aa~~La--~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~------~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
+.+=....+.|+..| ++.... ....+++.||++|||+|.++..+++.+ .+|++.+-++.+...++..+.
T Consensus 159 D~vKY~~Ye~AI~~al~D~~~~~---~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~ 235 (448)
T PF05185_consen 159 DPVKYDQYERAIEEALKDRVRKN---SYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN 235 (448)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTS----SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhhhc---cccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH
Confidence 444455556665322 333221 122367899999999999998887764 699999999988888887777
Q ss_pred HccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEE--eccccCcccHHHHHHHHHHhc
Q 020158 164 LNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLA--ADVIYSDDLTDALFHTLKRLM 241 (330)
Q Consensus 164 ~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIla--aDviY~~~~~~~l~~tl~~lL 241 (330)
.|+. .++|++..-|-.+. +...++|+||. -..+=+.++.+..+....++|
T Consensus 236 ~n~w----~~~V~vi~~d~r~v------------------------~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfL 287 (448)
T PF05185_consen 236 ANGW----GDKVTVIHGDMREV------------------------ELPEKVDIIVSELLGSFGDNELSPECLDAADRFL 287 (448)
T ss_dssp HTTT----TTTEEEEES-TTTS------------------------CHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGE
T ss_pred hcCC----CCeEEEEeCcccCC------------------------CCCCceeEEEEeccCCccccccCHHHHHHHHhhc
Confidence 8874 57899998876653 23458999985 223334456677788999999
Q ss_pred cCC
Q 020158 242 PLG 244 (330)
Q Consensus 242 ~~~ 244 (330)
+++
T Consensus 288 kp~ 290 (448)
T PF05185_consen 288 KPD 290 (448)
T ss_dssp EEE
T ss_pred CCC
Confidence 875
No 161
>PRK00811 spermidine synthase; Provisional
Probab=98.18 E-value=1.1e-05 Score=75.81 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHcc-CCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNS-GVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~-~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
++++||+||||+|.++..+++. ..+|++.|+++.+++.+++++.... .... ..++++...|-.....
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~-d~rv~v~~~Da~~~l~--------- 145 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYD-DPRVELVIGDGIKFVA--------- 145 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccccc-CCceEEEECchHHHHh---------
Confidence 4689999999999999888876 3689999999999999999885422 1111 3566666665332100
Q ss_pred ccccccccCccchhccCCeeEEEEeccc--cCcc---cHHHHHHHHHHhccCC
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVI--YSDD---LTDALFHTLKRLMPLG 244 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDvi--Y~~~---~~~~l~~tl~~lL~~~ 244 (330)
...++||+|+. |.. +.+. ....+++.++++|+++
T Consensus 146 -------------~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 146 -------------ETENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred -------------hCCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 01358999996 331 1111 2477889999999765
No 162
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=3.9e-06 Score=70.21 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=51.2
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++.|+.+++||||||.+++.++..+ ..|++.|++|++|+.+.+|++.-. -++.+...+..+.
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE------vqidlLqcdildl 108 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE------VQIDLLQCDILDL 108 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh------hhhheeeeeccch
Confidence 67999999999999999998888774 689999999999999999997654 3345555554443
No 163
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.18 E-value=1.6e-05 Score=69.85 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=60.6
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (330)
..-+|.+|||+|||+|..+..+++.. .+|+++|+++.+ . ..++.+...|+.+.....
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~-----~~~i~~~~~d~~~~~~~~---- 88 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------P-----IENVDFIRGDFTDEEVLN---- 88 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------c-----CCCceEEEeeCCChhHHH----
Confidence 44678999999999999888887763 479999999743 1 123556666655421000
Q ss_pred CCCccccccccCccchhccCCeeEEEEecccc-----Ccc------cHHHHHHHHHHhccCCC
Q 020158 194 NSSASQERYSWNSSELKEVQRASVLLAADVIY-----SDD------LTDALFHTLKRLMPLGS 245 (330)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY-----~~~------~~~~l~~tl~~lL~~~~ 245 (330)
.. .......+||+|++.-..+ ... ..+.+++.+.++|++++
T Consensus 89 -------~l----~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG 140 (188)
T TIGR00438 89 -------KI----RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKG 140 (188)
T ss_pred -------HH----HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCC
Confidence 00 0000134799999742211 111 23678889999998764
No 164
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.17 E-value=2.2e-05 Score=72.43 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=55.4
Q ss_pred HHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 105 LADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
+++.+.+.. ...++.+|||+|||+|..+..++..+..|++.|.++.+++.++.++.. ..++.+...|..+
T Consensus 17 i~~~i~~~~---~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~~ 86 (253)
T TIGR00755 17 VIQKIVEAA---NVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHhc---CCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchhc
Confidence 344555442 345678999999999999999999988999999999999999988743 2467777777655
Q ss_pred C
Q 020158 185 P 185 (330)
Q Consensus 185 ~ 185 (330)
.
T Consensus 87 ~ 87 (253)
T TIGR00755 87 V 87 (253)
T ss_pred C
Confidence 3
No 165
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.16 E-value=1.4e-05 Score=74.40 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=69.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
++++||+||||+|..+..+++. ..+|+++|+++.+++.+++++........ ..++++...|..+...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~-~~~v~i~~~D~~~~l~---------- 140 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYD-DPRVDLQIDDGFKFLA---------- 140 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccccc-CCceEEEECchHHHHH----------
Confidence 4579999999999888777666 36899999999999999998754322111 2455555433211100
Q ss_pred cccccccCccchhccCCeeEEEEeccccC---cc--cHHHHHHHHHHhccCCCCeEEEE
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYS---DD--LTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~---~~--~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
...++||+|+. |.... .. ....+++.+.++|+++ +++++
T Consensus 141 ------------~~~~~yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L~pg--G~lv~ 184 (270)
T TIGR00417 141 ------------DTENTFDVIIV-DSTDPVGPAETLFTKEFYELLKKALNED--GIFVA 184 (270)
T ss_pred ------------hCCCCccEEEE-eCCCCCCcccchhHHHHHHHHHHHhCCC--cEEEE
Confidence 01358999996 33311 11 1577889999999775 34444
No 166
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.13 E-value=4.2e-05 Score=69.80 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=75.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
+.++|||||+|.|..++.+++. +.++++-|+ |++++.++. ..++++...|+.+..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f~~~----------- 156 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFFDPL----------- 156 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TTTCC-----------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----------ccccccccccHHhhh-----------
Confidence 4578999999999999999887 579999999 688888877 278999999988431
Q ss_pred cccccccCccchhccCCeeEEEEeccccC--cccHHHHHHHHHHhccCCCCeEEEEEeee
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKKVLYLALEK 255 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL~~~~~~~i~va~~~ 255 (330)
.. +|+|+.+.|+++ ++....+++.+...|++++.+.++|.-..
T Consensus 157 --------------P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 157 --------------PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp --------------SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred --------------cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 13 999999999976 56777899999999987634556654333
No 167
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.12 E-value=1e-05 Score=78.72 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=72.7
Q ss_pred CCeEEEEcCccCHHHHHHHHh--C-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 121 GIISLELGAGTGLAGILLSRV--A-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~--~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
+.+|||+.||+|..||.++.. | .+|++.|+++.+++.+++|+++|+. .++.+...|......
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~---------- 109 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLR---------- 109 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHH----------
Confidence 468999999999999999987 3 6899999999999999999999973 456666555433210
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
....+||+|.. |. |. ...++++.+-+.++.+ +.++++
T Consensus 110 ------------~~~~~fDvIdl-DP-fG--s~~~fld~al~~~~~~--glL~vT 146 (374)
T TIGR00308 110 ------------YRNRKFHVIDI-DP-FG--TPAPFVDSAIQASAER--GLLLVT 146 (374)
T ss_pred ------------HhCCCCCEEEe-CC-CC--CcHHHHHHHHHhcccC--CEEEEE
Confidence 01247999887 77 42 3356777777777543 466665
No 168
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.8e-05 Score=78.46 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=85.7
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
+..|..+..+.. ....+.+||||=||.|..|+.+|+..++|+++++++++++.+++|++.|+. .++.+...+
T Consensus 278 ~ekl~~~a~~~~---~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i-----~N~~f~~~~ 349 (432)
T COG2265 278 AEKLYETALEWL---ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI-----DNVEFIAGD 349 (432)
T ss_pred HHHHHHHHHHHH---hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEeCC
Confidence 445666666553 345668999999999999999999999999999999999999999999994 568888776
Q ss_pred CCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 182 WMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 182 W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
-.+..+. |. ....+|+||.--. ....-+.+++.|.++ ++..++|+|+
T Consensus 350 ae~~~~~---------------~~-----~~~~~d~VvvDPP--R~G~~~~~lk~l~~~---~p~~IvYVSC 396 (432)
T COG2265 350 AEEFTPA---------------WW-----EGYKPDVVVVDPP--RAGADREVLKQLAKL---KPKRIVYVSC 396 (432)
T ss_pred HHHHhhh---------------cc-----ccCCCCEEEECCC--CCCCCHHHHHHHHhc---CCCcEEEEeC
Confidence 5443211 10 2347888874211 022445666666655 4678999986
No 169
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=7.4e-05 Score=68.28 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=78.6
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-C--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~-~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (330)
....|.+|||.|.|+|..+.++|+. | .+|+.-|+.++.++.+++|+..-+. ..++....-|-.+..
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d~v~~~~~Dv~~~~------- 159 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GDRVTLKLGDVREGI------- 159 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----ccceEEEeccccccc-------
Confidence 5668999999999999999999975 3 5899999999999999999988643 244666654433321
Q ss_pred CCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
....||.|+. |-......+..+..+|++++..++|+
T Consensus 160 -----------------~~~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 160 -----------------DEEDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred -----------------cccccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 1237888763 56677889999999999986666665
No 170
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.05 E-value=3.4e-05 Score=71.04 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.+.++|||||+++|+.++.+|.. ..+|+..|.+++..+.++.|++..+. ..++++...+..+..+....
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G~a~e~L~~l~~---- 149 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREGPALPVLDQMIE---- 149 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeccHHHHHHHHHh----
Confidence 46689999999999999999875 46899999999999999999998765 46788777765443111000
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
.....++||+|+.- -+...+...+..+.++|++| +++++
T Consensus 150 ------------~~~~~~~fD~iFiD---adK~~Y~~y~~~~l~ll~~G--Gviv~ 188 (247)
T PLN02589 150 ------------DGKYHGTFDFIFVD---ADKDNYINYHKRLIDLVKVG--GVIGY 188 (247)
T ss_pred ------------ccccCCcccEEEec---CCHHHhHHHHHHHHHhcCCC--eEEEE
Confidence 00012579998842 22556677778888899764 44443
No 171
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.01 E-value=9.1e-05 Score=67.28 Aligned_cols=127 Identities=9% Similarity=0.054 Sum_probs=84.7
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHH-------ccCCCCCCCe
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL-------NSGVFSHQGS 174 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~-------N~~~~~~~~~ 174 (330)
.-.|.+|+... ..-++.+||..|||.|.-.+.+|..|.+|++.|+++..++.+.+.... +....-....
T Consensus 29 np~L~~~~~~l----~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 29 NEFLVKHFSKL----NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred CHHHHHHHHhc----CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 45666776443 222578999999999999999999999999999999998877542111 0000001346
Q ss_pred eEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEE--EeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLL--AADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIl--aaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
+++...|+.+..+.. ...++||+|. ++=|-..++.-...++.|.++|++++. .+++.
T Consensus 105 i~~~~gD~f~l~~~~--------------------~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~-llll~ 163 (226)
T PRK13256 105 IEIYVADIFNLPKIA--------------------NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ-ILLLV 163 (226)
T ss_pred eEEEEccCcCCCccc--------------------cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE-EEEEE
Confidence 777777766542100 1235789866 444445677888899999999988743 44444
Q ss_pred e
Q 020158 253 L 253 (330)
Q Consensus 253 ~ 253 (330)
+
T Consensus 164 ~ 164 (226)
T PRK13256 164 M 164 (226)
T ss_pred E
Confidence 4
No 172
>PRK01581 speE spermidine synthase; Validated
Probab=98.00 E-value=3e-05 Score=74.83 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHH---HccCCCCCCCeeEEEEecCCCCCCCCccCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQ---LNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~---~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (330)
.+.++||+||||+|.+...+.+.. .+|++.|++++|++.++.... .|...+. ..++++...|-.+...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~-DpRV~vvi~Da~~fL~------ 221 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFF-DNRVNVHVCDAKEFLS------ 221 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCC-CCceEEEECcHHHHHH------
Confidence 456899999999998877777764 699999999999999996321 2322111 3566666555332110
Q ss_pred CCCccccccccCccchhccCCeeEEEEeccccCc-------ccHHHHHHHHHHhccCC
Q 020158 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSD-------DLTDALFHTLKRLMPLG 244 (330)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~-------~~~~~l~~tl~~lL~~~ 244 (330)
...++||+|+. |+ .++ -....+++.+.+.|+++
T Consensus 222 ----------------~~~~~YDVIIv-Dl-~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 222 ----------------SPSSLYDVIII-DF-PDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred ----------------hcCCCccEEEE-cC-CCccccchhhhhHHHHHHHHHHhcCCC
Confidence 11357999995 43 222 12367889999999775
No 173
>PRK03612 spermidine synthase; Provisional
Probab=97.98 E-value=2.8e-05 Score=79.09 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=71.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHH---ccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQL---NSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~---N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
++++||++|||+|.....+++.. .+|++.|+++++++.+++|... |..... .+++++..-|-.+..
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~-dprv~vi~~Da~~~l-------- 367 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALD-DPRVTVVNDDAFNWL-------- 367 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccC-CCceEEEEChHHHHH--------
Confidence 56899999999999998888774 6999999999999999997533 321121 346666655422210
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCc------ccHHHHHHHHHHhccCCCCeEEEE
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSD------DLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~------~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
....++||+|+.. .-... -....+++.++++|+++ +++++
T Consensus 368 --------------~~~~~~fDvIi~D-~~~~~~~~~~~L~t~ef~~~~~~~L~pg--G~lv~ 413 (521)
T PRK03612 368 --------------RKLAEKFDVIIVD-LPDPSNPALGKLYSVEFYRLLKRRLAPD--GLLVV 413 (521)
T ss_pred --------------HhCCCCCCEEEEe-CCCCCCcchhccchHHHHHHHHHhcCCC--eEEEE
Confidence 0013589999984 32211 12456889999999775 45554
No 174
>PLN02366 spermidine synthase
Probab=97.91 E-value=7.7e-05 Score=70.91 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=69.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
+.++||+||||.|.+...+++. ..+|++.|+++.+++.+++.+..-...+. ..++++...|-......
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~-dpRv~vi~~Da~~~l~~--------- 160 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFD-DPRVNLHIGDGVEFLKN--------- 160 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccC-CCceEEEEChHHHHHhh---------
Confidence 4689999999999988888887 36899999999999999998754211111 35677776652211000
Q ss_pred cccccccCccchhccCCeeEEEEeccccCc-----ccHHHHHHHHHHhccCC
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSD-----DLTDALFHTLKRLMPLG 244 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~-----~~~~~l~~tl~~lL~~~ 244 (330)
. ..++||+|+. |..-.. -....+++.+.++|+++
T Consensus 161 -----------~-~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 161 -----------A-PEGTYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred -----------c-cCCCCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 0 1247999996 432111 12457899999999775
No 175
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.89 E-value=4.3e-05 Score=69.08 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=84.6
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHH-HHHH-HccCCCC-----CCCe
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCA-KNVQ-LNSGVFS-----HQGS 174 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~-~Nv~-~N~~~~~-----~~~~ 174 (330)
+..|.+|+... ..-.+.+||..|||.|.-.+.+|..|.+|++.|+++.+++.+. +|.. .+..... ..++
T Consensus 23 ~p~L~~~~~~l----~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 23 NPALVEYLDSL----ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp THHHHHHHHHH----TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CHHHHHHHHhc----CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 66788887663 3345679999999999999999999999999999999888873 2322 1111110 1345
Q ss_pred eEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEe--ccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 175 VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAA--DVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 175 v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaa--DviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
+++...|..+..+ ...++||+|.=. =|--.++.-+.-++.+.++|++++. .++++
T Consensus 99 i~~~~gDfF~l~~----------------------~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~-~lLi~ 155 (218)
T PF05724_consen 99 ITIYCGDFFELPP----------------------EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR-GLLIT 155 (218)
T ss_dssp EEEEES-TTTGGG----------------------SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE-EEEEE
T ss_pred eEEEEcccccCCh----------------------hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc-EEEEE
Confidence 6777777665321 122579999843 3445578889999999999988643 34444
Q ss_pred ee
Q 020158 253 LE 254 (330)
Q Consensus 253 ~~ 254 (330)
+.
T Consensus 156 l~ 157 (218)
T PF05724_consen 156 LE 157 (218)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 176
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.87 E-value=0.0001 Score=69.14 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
.+|++||+|=|=||-.|+.++..| .+|+..|.+..+|+.+++|+.+|+.. ..++++...|..+...
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~---------- 188 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLK---------- 188 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHH----------
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHH----------
Confidence 478999999999999999998886 48999999999999999999999853 3567777766543210
Q ss_pred cccccccCccchhccCCeeEEEEeccccCc------ccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSD------DLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~------~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
.+....+||+||.--.-|-. ..+..|+..+.++++++ +.++++
T Consensus 189 ----------~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g--G~l~~~ 237 (286)
T PF10672_consen 189 ----------RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG--GLLLTC 237 (286)
T ss_dssp ----------HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE--EEEEEE
T ss_pred ----------HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC--CEEEEE
Confidence 12234689999975444432 25666777788888764 444443
No 177
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.81 E-value=3.5e-05 Score=67.24 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=50.8
Q ss_pred CeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 122 IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
..+-|||+|+|.+|+++|+.+.+|++...+|.....+.+|+..|+ ..++.+...|-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~ 90 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDAR 90 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-----CcceEEEecccc
Confidence 578999999999999999999999999999999999999998887 467787776643
No 178
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00016 Score=71.83 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=89.6
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEe
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDL 180 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~l 180 (330)
+|-+|-.++-++. ..-.++.++|+-||||+.|+++|+..++|++..++++.++-++.|+..|+. .++++...
T Consensus 367 ~aevLys~i~e~~---~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi-----sNa~Fi~g 438 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA---GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI-----SNATFIVG 438 (534)
T ss_pred HHHHHHHHHHHHh---CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc-----cceeeeec
Confidence 3567778887775 445568999999999999999999999999999999999999999999994 66676666
Q ss_pred cCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeeee
Q 020158 181 NWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEKR 256 (330)
Q Consensus 181 dW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~R 256 (330)
.-.+..+.... .....-++|.-.|-=- ..++..+++.|...-+ ++..+|++...+
T Consensus 439 qaE~~~~sl~~------------------~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~--~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 439 QAEDLFPSLLT------------------PCCDSETLVAIIDPPR-KGLHMKVIKALRAYKN--PRRLVYVSCNPH 493 (534)
T ss_pred chhhccchhcc------------------cCCCCCceEEEECCCc-ccccHHHHHHHHhccC--ccceEEEEcCHH
Confidence 33332221100 0012334444333322 4577788887777763 467888887665
No 179
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=0.00023 Score=64.61 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCC-------eeEEEEecCCCCC
Q 020158 116 SSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQG-------SVHVRDLNWMNPW 186 (330)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~-------~v~v~~ldW~~~~ 186 (330)
.+.|.++.+||+||-+|.+++.+|+. ...|++.|+++.++..+++|+..-........ .+....+.=....
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 36789999999999999999999987 57899999999999999999866432211000 0000000000000
Q ss_pred CCC---ccCCCCCccccccccCcc-chh-ccCCeeEEEEeccccC------cccHHHHHHHHHHhccCCCCeEEEE
Q 020158 187 PPI---FSLGNSSASQERYSWNSS-ELK-EVQRASVLLAADVIYS------DDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 187 ~~~---~~~~~~~~~~~~~~w~~~-~~~-~~~~~DlIlaaDviY~------~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
+.. .+..|..-....+-.... .+. ....||+|+|--+.-+ ++=+..|++.|.++|.+| +++++
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg--GiLvv 207 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG--GILVV 207 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC--cEEEE
Confidence 000 000000000001111111 111 2357999999877644 556788999999999876 44444
No 180
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.74 E-value=0.00034 Score=65.93 Aligned_cols=88 Identities=18% Similarity=0.325 Sum_probs=50.1
Q ss_pred CCeEEEEcCccC-HHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 121 GIISLELGAGTG-LAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 121 g~~VLELG~GtG-L~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
..++||+|+|.- +..|+.++. +-++++||+++..++.++.|++.|..+ ..+|.++.-.=... . +.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L---~~~I~l~~~~~~~~---i-~~------ 169 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL---ESRIELRKQKNPDN---I-FD------ 169 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T----TTTEEEEE--ST-S---S-TT------
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc---ccceEEEEcCCccc---c-ch------
Confidence 678999999985 667777665 889999999999999999999999333 57788766531111 0 00
Q ss_pred ccccccCccchhccCCeeEEEEeccccCccc
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDL 229 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~ 229 (330)
.-+...+.||+.+|...+|....
T Consensus 170 --------~i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 170 --------GIIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp --------TSTT--S-EEEEEE-----SS--
T ss_pred --------hhhcccceeeEEecCCccccChh
Confidence 00112358999999999997543
No 181
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.68 E-value=0.00056 Score=62.97 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=50.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-C--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~-~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
....|.+|||-|.|.|..++.+|+. | .+|+.-|..++..+.+++|++.++. ..++.+..-|..+
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl----~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL----DDNVTVHHRDVCE 103 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----CTTEEEEES-GGC
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----CCCceeEecceec
Confidence 6678999999999999999999986 3 5899999999999999999999875 4678888877653
No 182
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00047 Score=60.60 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=76.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.+.|.++|||=||+|.+|+-++.+ +.+|++.|.+..++..+++|++.-+. ..++.+...|-....+.
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~~~~da~~~L~~-------- 108 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL----EGEARVLRNDALRALKQ-------- 108 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----ccceEEEeecHHHHHHh--------
Confidence 489999999999999999999888 47999999999999999999987553 34555555442211000
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHH----HhccCCCCeEEEEEeeee
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLK----RLMPLGSKKVLYLALEKR 256 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~----~lL~~~~~~~i~va~~~R 256 (330)
......||+|. .|.=|.....+.....+. .+|+ +++.+++-..+.
T Consensus 109 ------------~~~~~~FDlVf-lDPPy~~~l~~~~~~~~~~~~~~~L~--~~~~iv~E~~~~ 157 (187)
T COG0742 109 ------------LGTREPFDLVF-LDPPYAKGLLDKELALLLLEENGWLK--PGALIVVEHDKD 157 (187)
T ss_pred ------------cCCCCcccEEE-eCCCCccchhhHHHHHHHHHhcCCcC--CCcEEEEEeCCC
Confidence 00112599887 567777676655555444 4454 356777744433
No 183
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.66 E-value=0.00015 Score=70.30 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
...|.+++.... ..-++ +||||=||+|..|+.+|..+++|++++..+.+++.+++|+..|+. .++++...+
T Consensus 182 ~~~l~~~~~~~l---~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-----~n~~f~~~~ 252 (352)
T PF05958_consen 182 NEKLYEQALEWL---DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-----DNVEFIRGD 252 (352)
T ss_dssp HHHHHHHHHHHC---TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--
T ss_pred HHHHHHHHHHHh---hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-----CcceEEEee
Confidence 445556655543 22233 899999999999999999999999999999999999999999994 678877654
No 184
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.66 E-value=0.0001 Score=66.79 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=74.0
Q ss_pred eEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 123 ISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
+|||+|||.|-+..-+.+- +-.|++.|.+|.+++..+.|...+. .++..-..|...+....
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~~--------- 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLKE--------- 138 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhccC---------
Confidence 7999999999887766665 2589999999999999999998875 33333333333321000
Q ss_pred ccccccCccchhccCCeeEEEEeccc--cCcccHHHHHHHHHHhccCCCCeEEEEEeeeeCc
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVI--YSDDLTDALFHTLKRLMPLGSKKVLYLALEKRYN 258 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDvi--Y~~~~~~~l~~tl~~lL~~~~~~~i~va~~~R~~ 258 (330)
....+.+|+|++-=|+ -.++-....++.+.++|+|| +.+++.---|+.
T Consensus 139 ----------~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG--G~llfrDYg~~D 188 (264)
T KOG2361|consen 139 ----------PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG--GSLLFRDYGRYD 188 (264)
T ss_pred ----------CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC--cEEEEeecccch
Confidence 0123578888865555 23677888999999999865 456664333443
No 185
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.63 E-value=7.4e-05 Score=64.38 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=50.8
Q ss_pred CeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 122 IISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+.|+|+.||.|--.+.+|+.+.+|++.|+++..++.++.|++.-+. ..++.+...||.+.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~ 60 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFEL 60 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHH
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHH
Confidence 3699999999999999999999999999999999999999999874 47899999999875
No 186
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.62 E-value=0.0002 Score=59.62 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=49.4
Q ss_pred eEEEEcCccCHHHHHHHHhCC--eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 123 ISLELGAGTGLAGILLSRVAW--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~~~--~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+|||+|||+|..++.+++.+. +|++.|.++.+.+.+++|+..|+. .++.+....+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-----~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-----PNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEEeeeeCC
Confidence 489999999999999998854 799999999999999999999873 4577777776654
No 187
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.58 E-value=0.0007 Score=58.23 Aligned_cols=126 Identities=14% Similarity=0.141 Sum_probs=80.2
Q ss_pred cCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCC
Q 020158 94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFS 170 (330)
Q Consensus 94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~ 170 (330)
+| .+=++|-.||+-|.... ..-.|+.|||||.|||...-++.++| ..+++.+++++....+.+..
T Consensus 26 VG-aI~PsSs~lA~~M~s~I---~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------- 93 (194)
T COG3963 26 VG-AILPSSSILARKMASVI---DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------- 93 (194)
T ss_pred ee-eecCCcHHHHHHHHhcc---CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------
Confidence 44 34467778888887663 44578899999999998887777775 58999999999887776543
Q ss_pred CCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcc--cHHHHHHHHHHhccCCCCeE
Q 020158 171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD--LTDALFHTLKRLMPLGSKKV 248 (330)
Q Consensus 171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~--~~~~l~~tl~~lL~~~~~~~ 248 (330)
..+.+.+.|-.+..... .......||.|+++=-+-+.. ..-++++.+...+..| ++.
T Consensus 94 --p~~~ii~gda~~l~~~l------------------~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g-g~l 152 (194)
T COG3963 94 --PGVNIINGDAFDLRTTL------------------GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG-GPL 152 (194)
T ss_pred --CCccccccchhhHHHHH------------------hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC-CeE
Confidence 22333333322210000 001345799999987776544 3345666666667654 444
Q ss_pred EEEE
Q 020158 249 LYLA 252 (330)
Q Consensus 249 i~va 252 (330)
+-+.
T Consensus 153 vqft 156 (194)
T COG3963 153 VQFT 156 (194)
T ss_pred EEEE
Confidence 4443
No 188
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=0.0003 Score=67.48 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCe-EEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWT-VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~-V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
..|-+|||+=||.|-.+|.+|+.|+. |++.|+||..++.+++|+.+|+. ...+.....|-.+..+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~---------- 252 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAP---------- 252 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhh----------
Confidence 45899999999999999999999865 99999999999999999999996 3557777776444311
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
....+|-|+..-.- ....++.+...+++.+
T Consensus 253 -------------~~~~aDrIim~~p~----~a~~fl~~A~~~~k~~ 282 (341)
T COG2520 253 -------------ELGVADRIIMGLPK----SAHEFLPLALELLKDG 282 (341)
T ss_pred -------------ccccCCEEEeCCCC----cchhhHHHHHHHhhcC
Confidence 12578999876443 3445555555566554
No 189
>PLN02823 spermine synthase
Probab=97.54 E-value=0.00053 Score=65.94 Aligned_cols=105 Identities=17% Similarity=0.252 Sum_probs=71.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
+.++||.||+|.|.+...+.+. ..+|++.|+++.+++.+++++..+...+. ..++++..-|-.....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~-dprv~v~~~Da~~~L~---------- 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFC-DKRLELIINDARAELE---------- 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccccc-CCceEEEEChhHHHHh----------
Confidence 4689999999999888877775 36899999999999999999876643222 3566666554222100
Q ss_pred cccccccCccchhccCCeeEEEEeccccCcc--------cHHHHHH-HHHHhccCCCCeEEEE
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVIYSDD--------LTDALFH-TLKRLMPLGSKKVLYL 251 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~--------~~~~l~~-tl~~lL~~~~~~~i~v 251 (330)
...++||+|+. |+ .++. ....+++ .+++.|+++ +++++
T Consensus 172 ------------~~~~~yDvIi~-D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~--Gvlv~ 218 (336)
T PLN02823 172 ------------KRDEKFDVIIG-DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPG--GIFVT 218 (336)
T ss_pred ------------hCCCCccEEEe-cC-CCccccCcchhhccHHHHHHHHHHhcCCC--cEEEE
Confidence 02357999994 44 2321 2456777 889999765 44443
No 190
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.42 E-value=0.0038 Score=56.93 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=84.4
Q ss_pred cCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCC
Q 020158 94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSH 171 (330)
Q Consensus 94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~ 171 (330)
-|...++.++.=|.|+.++ ..+.|++||=|| =-=|+||++|.. .++|++.|+++.+++.+++.++..+
T Consensus 22 Q~~~T~eT~~~Ra~~~~~~----gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----- 91 (243)
T PF01861_consen 22 QGYATPETTLRRAALMAER----GDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----- 91 (243)
T ss_dssp ---B-HHHHHHHHHHHHHT----T-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----
T ss_pred cccccHHHHHHHHHHHHhc----CcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-----
Confidence 3667788888888898886 678999999998 334899988876 4799999999999999999999887
Q ss_pred CCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 172 QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 172 ~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
-++++...|..++.|.. ..++||+++ .|.-|-.+-...|+.---..|+. .++..|+
T Consensus 92 -l~i~~~~~DlR~~LP~~---------------------~~~~fD~f~-TDPPyT~~G~~LFlsRgi~~Lk~-~g~~gy~ 147 (243)
T PF01861_consen 92 -LPIEAVHYDLRDPLPEE---------------------LRGKFDVFF-TDPPYTPEGLKLFLSRGIEALKG-EGCAGYF 147 (243)
T ss_dssp ---EEEE---TTS---TT---------------------TSS-BSEEE-E---SSHHHHHHHHHHHHHTB-S-TT-EEEE
T ss_pred -CceEEEEecccccCCHH---------------------HhcCCCEEE-eCCCCCHHHHHHHHHHHHHHhCC-CCceEEE
Confidence 34889999988875543 246899887 68888888888888777777764 3446777
Q ss_pred EeeeeC
Q 020158 252 ALEKRY 257 (330)
Q Consensus 252 a~~~R~ 257 (330)
++..+.
T Consensus 148 ~~~~~~ 153 (243)
T PF01861_consen 148 GFTHKE 153 (243)
T ss_dssp EE-TTT
T ss_pred EEecCc
Confidence 766553
No 191
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.34 E-value=0.0013 Score=61.45 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=65.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (330)
..|+.++|||+|||+|....++... -.++++.|.++.|++..+.=+. +... . ....|......
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~-~~~~------~--~~~~~~~~~~~----- 95 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR-AGPN------N--RNAEWRRVLYR----- 95 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh-cccc------c--ccchhhhhhhc-----
Confidence 4688999999999999765554443 3689999999999987776433 2211 0 11112211000
Q ss_pred CCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 194 NSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 194 ~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
+.......|+|+++-++-.... ....+.+.++-+...+.+++|-
T Consensus 96 --------------~~~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVE 139 (274)
T PF09243_consen 96 --------------DFLPFPPDDLVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVE 139 (274)
T ss_pred --------------ccccCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEc
Confidence 0001234499999999988666 6666677776433333455553
No 192
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.27 E-value=0.0039 Score=57.85 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
..-+++.|.... ..-++..|||+|+|+|..+..++..+++|++.+.++.+.+.++..... ..++.+...|
T Consensus 15 ~~~~~~~Iv~~~---~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~D 84 (262)
T PF00398_consen 15 DPNIADKIVDAL---DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS-------NPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHHH---TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES-
T ss_pred CHHHHHHHHHhc---CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------cccceeeecc
Confidence 445666666664 334789999999999999999999999999999999999999987652 4678888888
Q ss_pred CCCC
Q 020158 182 WMNP 185 (330)
Q Consensus 182 W~~~ 185 (330)
..+.
T Consensus 85 ~l~~ 88 (262)
T PF00398_consen 85 FLKW 88 (262)
T ss_dssp TTTS
T ss_pred hhcc
Confidence 6653
No 193
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.26 E-value=0.0018 Score=57.07 Aligned_cols=89 Identities=22% Similarity=0.236 Sum_probs=62.7
Q ss_pred eEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcccc
Q 020158 123 ISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (330)
+++|+|+|.|++||.+|-. ..+|++.|-...=...++.-+..-+ ..++++.....++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-----L~nv~v~~~R~E~~--------------- 110 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-----LSNVEVINGRAEEP--------------- 110 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHHT---------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-----CCCEEEEEeeeccc---------------
Confidence 7999999999999999987 4689999999755555544443333 24577776665441
Q ss_pred ccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 201 ~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
.....||+|++--+- ..+.++..+..+++++
T Consensus 111 ---------~~~~~fd~v~aRAv~----~l~~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 111 ---------EYRESFDVVTARAVA----PLDKLLELARPLLKPG 141 (184)
T ss_dssp ---------TTTT-EEEEEEESSS----SHHHHHHHHGGGEEEE
T ss_pred ---------ccCCCccEEEeehhc----CHHHHHHHHHHhcCCC
Confidence 123589999987543 6678888888888664
No 194
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.26 E-value=0.00065 Score=60.45 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=63.2
Q ss_pred CCCeEEEEcCccC--HHHHHHHHh------C---CeEEEEeCchHHHHHHHHHH-HHccCC-CC----------------
Q 020158 120 NGIISLELGAGTG--LAGILLSRV------A---WTVFLTDHGNYILDNCAKNV-QLNSGV-FS---------------- 170 (330)
Q Consensus 120 ~g~~VLELG~GtG--L~gl~lA~~------~---~~V~~TD~~~~~L~~~~~Nv-~~N~~~-~~---------------- 170 (330)
+..+|+-.||+|| ..||++... . .+|++||+++.+|+.+++=+ ..+... +.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 444444332 1 38999999999999886421 000000 00
Q ss_pred -----CCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC--cccHHHHHHHHHHhccC
Q 020158 171 -----HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPL 243 (330)
Q Consensus 171 -----~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL~~ 243 (330)
-...|.+..++-.+.. .....||+|+|-+|+.+ .+....+++.+...|++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-----------------------~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p 167 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-----------------------PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP 167 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-----------------------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE
T ss_pred eEChHHcCceEEEecccCCCC-----------------------cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC
Confidence 0234666666655511 12468999999999844 55678899999999976
Q ss_pred CCCeEEEEEe
Q 020158 244 GSKKVLYLAL 253 (330)
Q Consensus 244 ~~~~~i~va~ 253 (330)
+ +.+++..
T Consensus 168 g--G~L~lG~ 175 (196)
T PF01739_consen 168 G--GYLFLGH 175 (196)
T ss_dssp E--EEEEE-T
T ss_pred C--CEEEEec
Confidence 4 6777753
No 195
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.26 E-value=0.0021 Score=59.42 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=54.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..-.+..|||+|-|||.....+...|++|++.+.++.|++.+++.++--.. .+..++...|...-
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~----~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK----SGKLQVLHGDFLKT 119 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc----cceeeEEecccccC
Confidence 445678999999999999999999999999999999999999988854321 46788888887764
No 196
>PRK00536 speE spermidine synthase; Provisional
Probab=97.24 E-value=0.0022 Score=59.53 Aligned_cols=93 Identities=11% Similarity=-0.049 Sum_probs=67.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
+.++||=+|.|-|.+.--+.++..+|++.|+++++++.+++-+-.....+. ..++++.. |...
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~-DpRv~l~~--~~~~-------------- 134 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKN-NKNFTHAK--QLLD-------------- 134 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhc-CCCEEEee--hhhh--------------
Confidence 468999999999999999998877999999999999999983322211122 35565554 2211
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
...++||+|| .|..|. ..+.+.+++.|+++
T Consensus 135 ----------~~~~~fDVII-vDs~~~----~~fy~~~~~~L~~~ 164 (262)
T PRK00536 135 ----------LDIKKYDLII-CLQEPD----IHKIDGLKRMLKED 164 (262)
T ss_pred ----------ccCCcCCEEE-EcCCCC----hHHHHHHHHhcCCC
Confidence 0125799999 677654 57778899999775
No 197
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.21 E-value=0.0022 Score=56.18 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHhCCe-----------EEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRVAWT-----------VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPW 186 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~~~~-----------V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~ 186 (330)
.-+|..|||-=||+|-.-|-+|..+.. +++.|+++.++..++.|+...+. ...+.+...|..+..
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~----~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV----EDYIDFIQWDARELP 101 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGGEEEEE--GGGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc----CCceEEEecchhhcc
Confidence 345789999999999999988887533 67999999999999999987664 356777776655431
Q ss_pred CCCccCCCCCccccccccCccchhccCCeeEEEEeccccC--------cccHHHHHHHHHHhccC
Q 020158 187 PPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--------DDLTDALFHTLKRLMPL 243 (330)
Q Consensus 187 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~--------~~~~~~l~~tl~~lL~~ 243 (330)
...+.+|+||+.-..-. ..++..+++.+.+.+++
T Consensus 102 -----------------------~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 102 -----------------------LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -----------------------GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred -----------------------cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 02247898887544332 23556667777777754
No 198
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0025 Score=58.91 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=56.1
Q ss_pred HHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 106 ADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 106 a~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+.+.... ...++.+|||+|+|.|.+...+++.+++|++.++++.+++.+++.... ..++.+...|....
T Consensus 19 ~~kIv~~a---~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~DaLk~ 88 (259)
T COG0030 19 IDKIVEAA---NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHhc---CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCchhcC
Confidence 55666553 334578999999999999999999999999999999999999887752 46777777775553
No 199
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.13 E-value=0.0054 Score=64.74 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=58.0
Q ss_pred HHHHHHhhhcCCCCC-CCCCeEEEEcCccCHHHHHHHHhC----------------------------------------
Q 020158 104 VLADFVMHKMCTSSD-FNGIISLELGAGTGLAGILLSRVA---------------------------------------- 142 (330)
Q Consensus 104 ~La~~l~~~~~~~~~-~~g~~VLELG~GtGL~gl~lA~~~---------------------------------------- 142 (330)
.||.-|+... .. -.+..++|-+||+|-..|-+|..+
T Consensus 176 tlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 176 NLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred HHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 5666555542 22 257899999999999988887631
Q ss_pred ----CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 143 ----WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 143 ----~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++|+++.+++.++.|+..++. ...+.+...|+.+.
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~ 295 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADL 295 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhc
Confidence 2699999999999999999999875 35688888887764
No 200
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.0027 Score=57.17 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=64.3
Q ss_pred CCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
+++++|+|+|.|++|+.+|-. ..+|+..|-...=...++.=...-+ ..++++....-++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-----L~nv~i~~~RaE~~~~----------- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-----LENVEIVHGRAEEFGQ----------- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-----CCCeEEehhhHhhccc-----------
Confidence 689999999999999999955 4569999988654444443332222 2445555444333211
Q ss_pred ccccccCccchhccCC-eeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 199 QERYSWNSSELKEVQR-ASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~-~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
..+ ||+|.+--+ .....++..+..+++.++..++|.
T Consensus 132 -------------~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 132 -------------EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred -------------ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhh
Confidence 113 999997543 367788888888998765544443
No 201
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.10 E-value=0.0015 Score=61.45 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=69.4
Q ss_pred CCeEEEEcCccC--HHHHHHH--Hh------CCeEEEEeCchHHHHHHHHHHHH-----ccC------------------
Q 020158 121 GIISLELGAGTG--LAGILLS--RV------AWTVFLTDHGNYILDNCAKNVQL-----NSG------------------ 167 (330)
Q Consensus 121 g~~VLELG~GtG--L~gl~lA--~~------~~~V~~TD~~~~~L~~~~~Nv~~-----N~~------------------ 167 (330)
..+|+-.||.|| ..+|++. .. ..+|++||+++.+|+.++.-+=. +-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4555443 32 14799999999999999754310 000
Q ss_pred -CCCC--CCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC--cccHHHHHHHHHHhcc
Q 020158 168 -VFSH--QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMP 242 (330)
Q Consensus 168 -~~~~--~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL~ 242 (330)
.+.. ...|.+..++-.+.. ......||+|+|-+|+.+ +.....+++.+.+.|+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~----------------------~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~ 253 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ----------------------WAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK 253 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC----------------------CccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC
Confidence 0000 123344444433210 011358999999888854 4678899999999998
Q ss_pred CCCCeEEEEEe
Q 020158 243 LGSKKVLYLAL 253 (330)
Q Consensus 243 ~~~~~~i~va~ 253 (330)
+| +.+++..
T Consensus 254 pg--G~L~lG~ 262 (287)
T PRK10611 254 PD--GLLFAGH 262 (287)
T ss_pred CC--cEEEEeC
Confidence 76 4666643
No 202
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.02 E-value=0.0054 Score=57.14 Aligned_cols=124 Identities=14% Similarity=0.198 Sum_probs=77.9
Q ss_pred HHHHHHhhhcCC-CCCCCCCeEEEEcCccC--HHHHHHHHh--C-------CeEEEEeCchHHHHHHHH------HHHHc
Q 020158 104 VLADFVMHKMCT-SSDFNGIISLELGAGTG--LAGILLSRV--A-------WTVFLTDHGNYILDNCAK------NVQLN 165 (330)
Q Consensus 104 ~La~~l~~~~~~-~~~~~g~~VLELG~GtG--L~gl~lA~~--~-------~~V~~TD~~~~~L~~~~~------Nv~~N 165 (330)
.|.+.+...... ... +..+|...||+|| -.||+++.. . .+|++||++..+|+.++. +...|
T Consensus 80 ~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 80 ELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 566666643210 011 4679999999999 555554433 2 489999999999999863 33222
Q ss_pred cCCC------C--C----------CCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC-
Q 020158 166 SGVF------S--H----------QGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS- 226 (330)
Q Consensus 166 ~~~~------~--~----------~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~- 226 (330)
-... . . ...|.+..++-..+.+ ..+.||+|+|-+|+-+
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-----------------------~~~~fD~IfCRNVLIYF 215 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-----------------------FLGKFDLIFCRNVLIYF 215 (268)
T ss_pred CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-----------------------ccCCCCEEEEcceEEee
Confidence 2100 0 0 2234555555444321 2357999999998833
Q ss_pred -cccHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 227 -DDLTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 227 -~~~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
...-..++..+...|++| +.+++..
T Consensus 216 d~~~q~~il~~f~~~L~~g--G~LflG~ 241 (268)
T COG1352 216 DEETQERILRRFADSLKPG--GLLFLGH 241 (268)
T ss_pred CHHHHHHHHHHHHHHhCCC--CEEEEcc
Confidence 457778999999999765 6777754
No 203
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.98 E-value=0.0094 Score=52.92 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=69.8
Q ss_pred eEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcccc
Q 020158 123 ISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (330)
.+||||||.|-.-+.+|.. ...+++.|+....+..+.+.+...+ ..++.+...|.......
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l~~------------ 82 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELLRR------------ 82 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHHHH------------
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHHhh------------
Confidence 8999999999888888876 5799999999999988888888876 47888888775542110
Q ss_pred ccccCccchhccCCeeEEE--EeccccCc------ccHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 201 RYSWNSSELKEVQRASVLL--AADVIYSD------DLTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 201 ~~~w~~~~~~~~~~~DlIl--aaDviY~~------~~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
.-..+.+|-|. -.|.-.-. -..+.+++.+.++|++| +.+++..
T Consensus 83 --------~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g--G~l~~~T 133 (195)
T PF02390_consen 83 --------LFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPG--GELYFAT 133 (195)
T ss_dssp --------HSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEE--EEEEEEE
T ss_pred --------cccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCC--CEEEEEe
Confidence 11124566554 22221111 15789999999999775 5677754
No 204
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.94 E-value=0.009 Score=53.71 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=77.1
Q ss_pred CCCeEEEEcCccCHHHH-HHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 120 NGIISLELGAGTGLAGI-LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl-~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
.-.++||.|||.|-++- ++.....+|-++|..+..++.++..+..+. .....+...-..+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f------------- 116 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDF------------- 116 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG--------------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhc-------------
Confidence 45799999999997774 556678899999999999999987654422 12222222221111
Q ss_pred ccccccCccchhccCCeeEEEEeccccC--cccHHHHHHHHHHhccCCCCeEEEEE-eeeeCcc-cccchh-hhccccch
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKKVLYLA-LEKRYNF-SLNDLD-VVANGYSH 273 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL~~~~~~~i~va-~~~R~~f-~~~~~d-~v~~~y~~ 273 (330)
. +...+||+|.+-=|+=+ ++.+-.|++-++..|+++ ++|++= .--+..+ ..+..| .|.....+
T Consensus 117 ------~----P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~--G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~ 184 (218)
T PF05891_consen 117 ------T----PEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPN--GVIVVKENVSSSGFDEFDEEDSSVTRSDEH 184 (218)
T ss_dssp -------------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEE--EEEEEEEEEESSSEEEEETTTTEEEEEHHH
T ss_pred ------c----CCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCC--cEEEEEecCCCCCCcccCCccCeeecCHHH
Confidence 1 12358999998777655 456677888888888764 555552 1111222 222222 26677888
Q ss_pred hhhhhh
Q 020158 274 FRSYIM 279 (330)
Q Consensus 274 f~~~l~ 279 (330)
|+..+.
T Consensus 185 ~~~lF~ 190 (218)
T PF05891_consen 185 FRELFK 190 (218)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888886
No 205
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.93 E-value=0.0065 Score=58.39 Aligned_cols=133 Identities=9% Similarity=0.095 Sum_probs=75.0
Q ss_pred eechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccC-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCC-CC--
Q 020158 98 VWKAELVLADFVMHKMCTSSDFNGIISLELGAGTG-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSH-QG-- 173 (330)
Q Consensus 98 vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtG-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~-~~-- 173 (330)
=|=-+.+...|+-... ...++.+|||||||-| =+.-.....-..++++|++...|+.++............ ..
T Consensus 43 NwvKs~LI~~~~~~~~---~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~ 119 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVK---QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRF 119 (331)
T ss_dssp HHHHHHHHHHHCHCCC---CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEE
T ss_pred HHHHHHHHHHHHHhhh---ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccc
Confidence 3667888888764321 2227889999999976 444444444579999999999999998877321111000 11
Q ss_pred --eeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC----cccHHHHHHHHHHhccCCCCe
Q 020158 174 --SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS----DDLTDALFHTLKRLMPLGSKK 247 (330)
Q Consensus 174 --~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~----~~~~~~l~~tl~~lL~~~~~~ 247 (330)
...+...|-... .....+ .....+||+|=+--.+++ ......+++.+..+|++| +
T Consensus 120 ~f~a~f~~~D~f~~-----------~l~~~~------~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G--G 180 (331)
T PF03291_consen 120 DFIAEFIAADCFSE-----------SLREKL------PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG--G 180 (331)
T ss_dssp CCEEEEEESTTCCS-----------HHHCTS------SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE--E
T ss_pred cchhheeccccccc-----------hhhhhc------cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC--C
Confidence 122222221110 000000 011258999999888876 446677899999999775 4
Q ss_pred EEEEE
Q 020158 248 VLYLA 252 (330)
Q Consensus 248 ~i~va 252 (330)
.++..
T Consensus 181 ~FIgT 185 (331)
T PF03291_consen 181 YFIGT 185 (331)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 206
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.93 E-value=0.0052 Score=55.05 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccC---CC-CCCCeeEEEEecCCCCCCCCcc
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSG---VF-SHQGSVHVRDLNWMNPWPPIFS 191 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~---~~-~~~~~v~v~~ldW~~~~~~~~~ 191 (330)
.-++...+|||||.|-+-+.+|.. ..++++.++.+...+.++.+...... .. .....+.+...|+.+..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~----- 114 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD----- 114 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH-----
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH-----
Confidence 345779999999999777766655 46799999998766665544432210 00 01345666666654420
Q ss_pred CCCCCccccccccCccchh-ccCCeeEEEEeccccCcccHHHHHHHHH
Q 020158 192 LGNSSASQERYSWNSSELK-EVQRASVLLAADVIYSDDLTDALFHTLK 238 (330)
Q Consensus 192 ~~~~~~~~~~~~w~~~~~~-~~~~~DlIlaaDviY~~~~~~~l~~tl~ 238 (330)
... .....|+|+++..+|++++...|.+.+.
T Consensus 115 ----------------~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~ 146 (205)
T PF08123_consen 115 ----------------FVKDIWSDADVVFVNNTCFDPDLNLALAELLL 146 (205)
T ss_dssp ----------------HHHHHGHC-SEEEE--TTT-HHHHHHHHHHHT
T ss_pred ----------------hHhhhhcCCCEEEEeccccCHHHHHHHHHHHh
Confidence 000 1246899999999998887777754443
No 207
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.92 E-value=0.034 Score=49.77 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=45.8
Q ss_pred EEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 124 SLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 124 VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
|.|+||--|.+++.+.+.+ .+|+++|+++.-|+.++.|+..++. ..++.++..|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgd 56 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGD 56 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-S
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECC
Confidence 6899999999999999986 4899999999999999999999875 4678887766
No 208
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.90 E-value=0.016 Score=55.64 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=68.9
Q ss_pred eechHHHHHHHHhhhcC----CCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCC
Q 020158 98 VWKAELVLADFVMHKMC----TSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQG 173 (330)
Q Consensus 98 vW~aa~~La~~l~~~~~----~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~ 173 (330)
.=+|++-|.+.+..... .....+|+++|||||++|-.+-.+.++|.+|+++|.++ | ..++.. .+
T Consensus 185 pSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l----~~~L~~-------~~ 252 (357)
T PRK11760 185 PSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-M----AQSLMD-------TG 252 (357)
T ss_pred CChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-c----CHhhhC-------CC
Confidence 35677777776544321 01246899999999999999999999999999999763 2 222222 24
Q ss_pred eeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 174 SVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 174 ~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
+|...+.+=....+ ....+|+|+ +|++-.+. .+++.+.+.+..+-
T Consensus 253 ~V~h~~~d~fr~~p-----------------------~~~~vDwvV-cDmve~P~---rva~lm~~Wl~~g~ 297 (357)
T PRK11760 253 QVEHLRADGFKFRP-----------------------PRKNVDWLV-CDMVEKPA---RVAELMAQWLVNGW 297 (357)
T ss_pred CEEEEeccCcccCC-----------------------CCCCCCEEE-EecccCHH---HHHHHHHHHHhcCc
Confidence 55555544222111 124788877 56665444 56677777776553
No 209
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.90 E-value=0.0011 Score=59.74 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=96.0
Q ss_pred CCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 121 GIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
...+++||||.|.++-.+-..+ .+++.+|.+-+|++.++..- .+.+.+..+--.+ +...+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q---------dp~i~~~~~v~DE--E~Ldf-------- 133 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ---------DPSIETSYFVGDE--EFLDF-------- 133 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC---------CCceEEEEEecch--hcccc--------
Confidence 3689999999998887776665 68999999999998887431 1223332222111 11101
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE-------eeeeCcccccchhhhccccc
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA-------LEKRYNFSLNDLDVVANGYS 272 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va-------~~~R~~f~~~~~d~v~~~y~ 272 (330)
...++|+||.+--+++..+++.-+..++..++| ++.++-+ ++.|...++.+++-. .|.+
T Consensus 134 -----------~ens~DLiisSlslHW~NdLPg~m~~ck~~lKP--Dg~FiasmlggdTLyELR~slqLAelER~-GGiS 199 (325)
T KOG2940|consen 134 -----------KENSVDLIISSLSLHWTNDLPGSMIQCKLALKP--DGLFIASMLGGDTLYELRCSLQLAELERE-GGIS 199 (325)
T ss_pred -----------cccchhhhhhhhhhhhhccCchHHHHHHHhcCC--CccchhHHhccccHHHHHHHhhHHHHHhc-cCCC
Confidence 235799999999999999999999999999966 4555443 566777777666543 2333
Q ss_pred hhhhhhhhhhcccccccccCCCeeeEEecCCC----cCccc
Q 020158 273 HFRSYIMEEGEHRRFERESFPAFVGKCIDLNE----FPQYV 309 (330)
Q Consensus 273 ~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~~----~p~~~ 309 (330)
++-+-+....+++++-. ..||..--++.+. +|.+|
T Consensus 200 phiSPf~qvrDiG~LL~--rAGF~m~tvDtDEi~v~Yp~mf 238 (325)
T KOG2940|consen 200 PHISPFTQVRDIGNLLT--RAGFSMLTVDTDEIVVGYPRMF 238 (325)
T ss_pred CCcChhhhhhhhhhHHh--hcCcccceecccceeecCchHH
Confidence 33333332223333311 1366666666543 45555
No 210
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.84 E-value=0.00042 Score=61.50 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=72.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
..+++||||||-|-++..++..-.+|++|+++..|...+++.- .| ....++|.+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~-yn----------Vl~~~ew~~t-------------- 166 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKN-YN----------VLTEIEWLQT-------------- 166 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcC-Cc----------eeeehhhhhc--------------
Confidence 3589999999999999999988788999999988887776310 01 1234666653
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
.-++|+|.|-.++=.....-.|++-|...+++.. +.+++|
T Consensus 167 ------------~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psn-grviva 206 (288)
T KOG3987|consen 167 ------------DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSN-GRVIVA 206 (288)
T ss_pred ------------CceeehHHHHHHHHhhcChHHHHHHHHHHhccCC-CcEEEE
Confidence 2379999999988777788899999999998843 334444
No 211
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.82 E-value=0.0043 Score=51.99 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=41.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHH-----h-CCeEEEEeCchHHHHHHHHHHHHcc
Q 020158 119 FNGIISLELGAGTGLAGILLSR-----V-AWTVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~-----~-~~~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
-+..+|+|+|||-|.+|.+++. . +.+|++.|.++..++.+.+..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 5678999999999999999998 3 6799999999998888887776544
No 212
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.80 E-value=0.011 Score=59.42 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
-.|.+|||++||.|-=+..+|.. ...|++.|+++.-+..++.|+++-+. .++.+...|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-----~nv~v~~~D 172 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-----SNVALTHFD 172 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCc
Confidence 46789999999999777777765 25899999999999999999998663 456555544
No 213
>PHA01634 hypothetical protein
Probab=96.77 E-value=0.0031 Score=51.85 Aligned_cols=51 Identities=8% Similarity=-0.043 Sum_probs=46.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSG 167 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~ 167 (330)
-.+++++|+++|+++|-.+|..+..| +.|++...++.+.+.++.|+..|..
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 46799999999999999999999885 6899999999999999999999864
No 214
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.75 E-value=0.0033 Score=61.48 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=67.9
Q ss_pred eEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccc
Q 020158 123 ISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQER 201 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~ 201 (330)
-||++|+||||+|+.+++.| ..|++.+.-.-|.+.+++-+..|+. ..++.+..-.=.+..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkrStev~--------------- 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM----SDKINVINKRSTEVK--------------- 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC----ccceeeeccccceee---------------
Confidence 68999999999999999985 5899999888899999988888875 456666533211110
Q ss_pred cccCccchhccCCeeEEEEeccccC---cccHHHHHHHHHHhccCCCC
Q 020158 202 YSWNSSELKEVQRASVLLAADVIYS---DDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 202 ~~w~~~~~~~~~~~DlIlaaDviY~---~~~~~~l~~tl~~lL~~~~~ 246 (330)
+-...+.|++++.|+.-. ...++.+-.+..+|+.++++
T Consensus 130 -------vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 130 -------VGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred -------ecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCe
Confidence 000124666666654322 44677788888888887653
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.71 E-value=0.011 Score=56.02 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHH---------hCCeEEEEeCchHHHHHHHHHHHHcc
Q 020158 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSR---------VAWTVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~---------~~~~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
.++++|.... ....+.+|+|-.||+|-.-+.+.. ...++++.|+++.++.+++.|+.+++
T Consensus 33 ~i~~l~~~~~---~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 33 EIVDLMVKLL---NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp HHHHHHHHHH---TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhh---hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 3445554443 335677999999999976666655 24689999999999999999998765
No 216
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.015 Score=51.87 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=51.3
Q ss_pred CeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHcc
Q 020158 95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
|+.+-=+|..+=.++++.. ...+.+|.+.|++|+|+|.++-.+|++ |..+++.|.-+++++..++|+..--
T Consensus 58 G~n~~iSAp~mha~~le~L-~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i 132 (237)
T KOG1661|consen 58 GYNLTISAPHMHATALEYL-DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDI 132 (237)
T ss_pred CCceEEcchHHHHHHHHHH-HHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhc
Confidence 4333346665555544432 123578999999999999888777765 3455999999999999999997643
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.57 E-value=0.01 Score=60.54 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=39.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC----------CeEEEEeCchHHHHHHHHHHHHcc
Q 020158 120 NGIISLELGAGTGLAGILLSRVA----------WTVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~----------~~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
.+.+|||.|||+|...+.++... ..+++.|+++.++..++.|+....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 45799999999998777776542 478999999999999999987654
No 218
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.56 E-value=0.0031 Score=57.10 Aligned_cols=135 Identities=14% Similarity=0.175 Sum_probs=84.1
Q ss_pred CCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCC-eEEEEeCchHHHHHHHHHHHHccCCCC
Q 020158 92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNVQLNSGVFS 170 (330)
Q Consensus 92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~-~V~~TD~~~~~L~~~~~Nv~~N~~~~~ 170 (330)
.+.+.--|.-+..=+.-+ ..-+|.+|||-..|.|.++|.++++|+ +|+-.+.+|.+|++++-|-=.-.. .
T Consensus 113 rt~~tdP~~Dt~~Kv~~V-------~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l-~- 183 (287)
T COG2521 113 RTKGTDPLEDTLAKVELV-------KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL-F- 183 (287)
T ss_pred cccCcCcHHHHHhhhhee-------ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc-c-
Confidence 344555565554433322 234799999999999999999999988 999999999999887755311111 0
Q ss_pred CCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcc---cHHHHHHHHHHhccCCCCe
Q 020158 171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDD---LTDALFHTLKRLMPLGSKK 247 (330)
Q Consensus 171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~---~~~~l~~tl~~lL~~~~~~ 247 (330)
...+++...|-.+.. +.+ ....||.||---.-+... ..+.|-+.+.++|++++..
T Consensus 184 -~~~i~iilGD~~e~V-------------~~~--------~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrl 241 (287)
T COG2521 184 -EIAIKIILGDAYEVV-------------KDF--------DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRL 241 (287)
T ss_pred -ccccEEecccHHHHH-------------hcC--------CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcE
Confidence 123444433322211 111 235799988322222211 3567788889999999887
Q ss_pred EEEEEeee-eC
Q 020158 248 VLYLALEK-RY 257 (330)
Q Consensus 248 ~i~va~~~-R~ 257 (330)
.-|+..+. |+
T Consensus 242 FHYvG~Pg~ry 252 (287)
T COG2521 242 FHYVGNPGKRY 252 (287)
T ss_pred EEEeCCCCccc
Confidence 77887554 44
No 219
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.56 E-value=0.23 Score=44.94 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=94.0
Q ss_pred CcCeEeechHH-HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CeEEEEeCchHHHHHHHHHHHHccCC
Q 020158 93 SVGLQVWKAEL-VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGNYILDNCAKNVQLNSGV 168 (330)
Q Consensus 93 ~~G~~vW~aa~-~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~--~~V~~TD~~~~~L~~~~~Nv~~N~~~ 168 (330)
..+.++|+--. -||..++.....-...+|.+||=||+.+|.+--.++-. + ..|++.+.++.....+- ++...
T Consensus 45 ~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~-~la~~--- 120 (229)
T PF01269_consen 45 KVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLL-NLAKK--- 120 (229)
T ss_dssp -EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH-HHHHH---
T ss_pred ccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHH-HHhcc---
Confidence 45899998722 33444433321124457899999999999666566655 3 48999999996554443 22222
Q ss_pred CCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeE
Q 020158 169 FSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKV 248 (330)
Q Consensus 169 ~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~ 248 (330)
..|+--.--|-..+ ..|. ...+.+|+|+ +||- .++..+-++.....+|+++ +.
T Consensus 121 ---R~NIiPIl~DAr~P--------------~~Y~------~lv~~VDvI~-~DVa-Qp~Qa~I~~~Na~~fLk~g--G~ 173 (229)
T PF01269_consen 121 ---RPNIIPILEDARHP--------------EKYR------MLVEMVDVIF-QDVA-QPDQARIAALNARHFLKPG--GH 173 (229)
T ss_dssp ---STTEEEEES-TTSG--------------GGGT------TTS--EEEEE-EE-S-STTHHHHHHHHHHHHEEEE--EE
T ss_pred ---CCceeeeeccCCCh--------------HHhh------cccccccEEE-ecCC-ChHHHHHHHHHHHhhccCC--cE
Confidence 23443333332222 1111 1124677766 4555 4688889999999999775 56
Q ss_pred EEEEeeeeCcccccchhhhccccchhhhhhhhhhcccccccccCCCeee-EEecCCCcCcccccccCCC
Q 020158 249 LYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVG-KCIDLNEFPQYVREYDRGN 316 (330)
Q Consensus 249 i~va~~~R~~f~~~~~d~v~~~y~~f~~~l~~~~~~~~~~~~~~~~f~v-~~i~~~~~p~~~~~yer~~ 316 (330)
++++.+.|.. |+.++.-.-|..-+.... +.+|.. +++.+. +|++..
T Consensus 174 ~~i~iKa~si------D~t~~p~~vf~~e~~~L~---------~~~~~~~e~i~Le-------Py~~dH 220 (229)
T PF01269_consen 174 LIISIKARSI------DSTADPEEVFAEEVKKLK---------EEGFKPLEQITLE-------PYERDH 220 (229)
T ss_dssp EEEEEEHHHH-------SSSSHHHHHHHHHHHHH---------CTTCEEEEEEE-T-------TTSTTE
T ss_pred EEEEEecCcc------cCcCCHHHHHHHHHHHHH---------HcCCChheEeccC-------CCCCCc
Confidence 6777676653 444444455555544321 235655 677766 677764
No 220
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.55 E-value=0.014 Score=49.98 Aligned_cols=76 Identities=9% Similarity=-0.053 Sum_probs=55.2
Q ss_pred EEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEecccc
Q 020158 146 FLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIY 225 (330)
Q Consensus 146 ~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY 225 (330)
++.|.+++||+.++++........ ..++++...|-.+... ..+.||+|+++.++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~--~~~i~~~~~d~~~lp~-----------------------~~~~fD~v~~~~~l~ 55 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC--YKCIEWIEGDAIDLPF-----------------------DDCEFDAVTMGYGLR 55 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC--CCceEEEEechhhCCC-----------------------CCCCeeEEEecchhh
Confidence 368999999999987765322110 2357777766543210 235799999999998
Q ss_pred CcccHHHHHHHHHHhccCCCC
Q 020158 226 SDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 226 ~~~~~~~l~~tl~~lL~~~~~ 246 (330)
+......+++.+.++|++|+.
T Consensus 56 ~~~d~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 56 NVVDRLRAMKEMYRVLKPGSR 76 (160)
T ss_pred cCCCHHHHHHHHHHHcCcCeE
Confidence 888899999999999988743
No 221
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.36 E-value=0.014 Score=53.68 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=69.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
+.++||-||-|.|.+.-.+.++. .+|++.|+++.+++.+++-+........ ..++++..-|=...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~-d~r~~i~~~Dg~~~------------ 142 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLD-DPRVRIIIGDGRKF------------ 142 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGG-STTEEEEESTHHHH------------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccC-CCceEEEEhhhHHH------------
Confidence 67899999999998887777764 7999999999999999987765432111 35666655542111
Q ss_pred cccccccCccchh-ccC-CeeEEEE--eccccCc--ccHHHHHHHHHHhccCCCCeEEEE
Q 020158 198 SQERYSWNSSELK-EVQ-RASVLLA--ADVIYSD--DLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 198 ~~~~~~w~~~~~~-~~~-~~DlIla--aDviY~~--~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
+. ..+ +||+|+. .|-.... -....+++.+++.|+++ +++.+
T Consensus 143 -----------l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~--Gv~v~ 189 (246)
T PF01564_consen 143 -----------LKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD--GVLVL 189 (246)
T ss_dssp -----------HHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE--EEEEE
T ss_pred -----------HHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC--cEEEE
Confidence 11 123 7999986 2211111 24678999999999764 44444
No 222
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.041 Score=50.06 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=77.2
Q ss_pred CeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHH-HHHHHHHHHccCCCCCC
Q 020158 95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYIL-DNCAKNVQLNSGVFSHQ 172 (330)
Q Consensus 95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L-~~~~~Nv~~N~~~~~~~ 172 (330)
..-|=++++-|...+.+. .-.++|++|||+||-||=..-++... +++|++.|.+-.-| .-++ | .
T Consensus 57 ~~yVSRG~~KL~~ale~F---~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR-----~------d 122 (245)
T COG1189 57 QPYVSRGGLKLEKALEEF---ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR-----N------D 122 (245)
T ss_pred cCccccHHHHHHHHHHhc---CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh-----c------C
Confidence 445678999999998876 36789999999999999888888888 57999999984222 1122 1 1
Q ss_pred CeeE-EEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEE
Q 020158 173 GSVH-VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 173 ~~v~-v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
.++. ....+.....+ .++ .+..|+|++-..+- ....++-.+..+++++...++++
T Consensus 123 ~rV~~~E~tN~r~l~~-------------------~~~--~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 123 PRVIVLERTNVRYLTP-------------------EDF--TEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CcEEEEecCChhhCCH-------------------HHc--ccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence 2222 23333222211 112 23678888765544 45567778888887765555444
No 223
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.12 E-value=0.18 Score=39.69 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=61.7
Q ss_pred EEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC-CCCCccCCCCCccc
Q 020158 124 SLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP-WPPIFSLGNSSASQ 199 (330)
Q Consensus 124 VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~-~~~~~~~~~~~~~~ 199 (330)
++|+|||+|... .++... ..+++.|.++.++...+.+... .. ...+.+...++... .+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~------------ 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG----LGLVDFVVADALGGVLP------------ 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC----CCceEEEEeccccCCCC------------
Confidence 999999999876 444443 3788999999888884443332 21 11145555555442 11
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeee
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEK 255 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~ 255 (330)
+.....+|++......+... ...++..+.+.++++ +.+++....
T Consensus 114 ---------~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~--g~~~~~~~~ 157 (257)
T COG0500 114 ---------FEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPG--GRLVLSDLL 157 (257)
T ss_pred ---------CCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCC--cEEEEEecc
Confidence 00113799994444444444 788889999999764 344444333
No 224
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.052 Score=52.10 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=51.3
Q ss_pred HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHcc
Q 020158 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
-||+.+..- ...-+|..|||==||||-.-+.+...|.+|+++|++..|+.-++.|++.-+
T Consensus 184 ~lAR~mVNL---a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~ 243 (347)
T COG1041 184 RLARAMVNL---ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYG 243 (347)
T ss_pred HHHHHHHHH---hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhC
Confidence 455555443 255689999999999999999999999999999999999999999998865
No 225
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.00 E-value=0.033 Score=50.00 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
.+|.+||++|=|.|++.-.+-..- ..-++...+|++++.++.+.=.. ..+|.+.+..|.+..+..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e------k~nViil~g~WeDvl~~L-------- 165 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE------KENVIILEGRWEDVLNTL-------- 165 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc------ccceEEEecchHhhhccc--------
Confidence 578999999999999887776652 45566789999999999876443 478899999999875443
Q ss_pred cccccccCccchhccCCeeEEEEeccc-cCcccHHHHHHHHHHhccCC
Q 020158 198 SQERYSWNSSELKEVQRASVLLAADVI-YSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIlaaDvi-Y~~~~~~~l~~tl~~lL~~~ 244 (330)
..+.||=|+- |.. -.-+.+..+.+.+-+||+|+
T Consensus 166 -------------~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 166 -------------PDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred -------------cccCcceeEe-echhhHHHHHHHHHHHHhhhcCCC
Confidence 2345887652 222 12235677788889999876
No 226
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.99 E-value=0.029 Score=53.07 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHH
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
-+|..+||.+||.|--+..++... .+|++.|.++++++.++.++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 456799999999999998888773 6899999999999999987643
No 227
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.72 E-value=0.099 Score=47.36 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=70.2
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLG 193 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~ 193 (330)
..++.+++||||.=||..+++.|.. +.+|++.|++++..+...+-++..+. ..++.+...+-.+..+..
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~esLd~l---- 141 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALESLDEL---- 141 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhhhHHHH----
Confidence 3478899999999999999998887 67999999999988888776666554 456777665533321110
Q ss_pred CCCccccccccCccchh--ccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 194 NSSASQERYSWNSSELK--EVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 194 ~~~~~~~~~~w~~~~~~--~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
+. ..+.||+++.- .+....-....-+-+|+++|
T Consensus 142 ---------------~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 142 ---------------LADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred ---------------HhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccc
Confidence 11 24689998742 23334446666667788765
No 228
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.68 E-value=0.014 Score=54.09 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHH-HhCCeEEEEeCchHHHHHHHHHH
Q 020158 116 SSDFNGIISLELGAGTGLAGILLS-RVAWTVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~lA-~~~~~V~~TD~~~~~L~~~~~Nv 162 (330)
+...+|.++||+|||.-+..++.| ....+|+++|+.+.-++.+++=+
T Consensus 52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence 466789999999999987765544 45789999999998777776654
No 229
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.44 E-value=0.12 Score=48.56 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=67.0
Q ss_pred CeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
++||-||-|.|-+.-.+.++. .++++.|+++.+++.+++=+..-..... ..++.+..-|=.+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~-------------- 142 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEF-------------- 142 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHH--------------
Confidence 699999999999998888885 7999999999999999976644221111 24555554442211
Q ss_pred cccccCccchh-ccCCeeEEEEeccccCcc-----cHHHHHHHHHHhccCC
Q 020158 200 ERYSWNSSELK-EVQRASVLLAADVIYSDD-----LTDALFHTLKRLMPLG 244 (330)
Q Consensus 200 ~~~~w~~~~~~-~~~~~DlIlaaDviY~~~-----~~~~l~~tl~~lL~~~ 244 (330)
+. ...+||+||. |+.=... ....|.+.++++|+++
T Consensus 143 ---------v~~~~~~fDvIi~-D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 143 ---------LRDCEEKFDVIIV-DSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred ---------HHhCCCcCCEEEE-cCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 11 1237999985 2221111 3688999999999764
No 230
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.32 E-value=0.14 Score=46.50 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=70.9
Q ss_pred CeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
..+||||||.|-.-+.+|+. -..+++.++....+..+.+.+...+. .++.+...|-....+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-----~Nlri~~~DA~~~l~~----------- 113 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-----KNLRLLCGDAVEVLDY----------- 113 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-----CcEEEEcCCHHHHHHh-----------
Confidence 58999999999888888877 36899999998888777777766542 2666665553322110
Q ss_pred cccccCccchhccCCeeEEEEeccccCcc-----------cHHHHHHHHHHhccCCCCeEEEEEeeeeCc
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDD-----------LTDALFHTLKRLMPLGSKKVLYLALEKRYN 258 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~-----------~~~~l~~tl~~lL~~~~~~~i~va~~~R~~ 258 (330)
+...+..|-|. +.|-+. ..+.+++.+.+.|+++ +.++++.-....
T Consensus 114 ---------~~~~~sl~~I~---i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g--G~l~~aTD~~~y 169 (227)
T COG0220 114 ---------LIPDGSLDKIY---INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPG--GVLHFATDNEEY 169 (227)
T ss_pred ---------cCCCCCeeEEE---EECCCCCCCccccccccCCHHHHHHHHHHccCC--CEEEEEecCHHH
Confidence 01122445443 222221 5688999999999775 678887655544
No 231
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.31 E-value=0.081 Score=49.22 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=77.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
.++.|+.|+=+| ---|+||++|.- ..+|...|+++.+++.+.+-++.-+ ..++.+..+|..++.|..
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plpe~----- 217 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLPED----- 217 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccChHH-----
Confidence 678999999999 667999998876 5799999999999999998887765 366888888888875432
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCcccHHHHHH-HHHHhccCCCCeEEEEEee
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFH-TLKRLMPLGSKKVLYLALE 254 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~-tl~~lL~~~~~~~i~va~~ 254 (330)
...+||+++ .|.-|-...+..|+. -+..|-..++.+.+.++..
T Consensus 218 ----------------~~~kFDvfi-TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 218 ----------------LKRKFDVFI-TDPPETIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred ----------------HHhhCCeee-cCchhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 346899876 344443333333332 2333333444566666543
No 232
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.23 E-value=0.31 Score=47.51 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=77.5
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCC-----------------------------------------eEEEEeCchHHH
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRVAW-----------------------------------------TVFLTDHGNYIL 155 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~~~-----------------------------------------~V~~TD~~~~~L 155 (330)
....+..++|-=||.|-+.|-+|..+. .+++.|+++.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 334557899999999999999998864 377999999999
Q ss_pred HHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC-----c---
Q 020158 156 DNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS-----D--- 227 (330)
Q Consensus 156 ~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~-----~--- 227 (330)
+.++.|+...+. .+.|.+...|-....++ ...+|+||++-. |- .
T Consensus 268 ~~Ak~NA~~AGv----~d~I~f~~~d~~~l~~~-----------------------~~~~gvvI~NPP-YGeRlg~~~~v 319 (381)
T COG0116 268 EGAKANARAAGV----GDLIEFKQADATDLKEP-----------------------LEEYGVVISNPP-YGERLGSEALV 319 (381)
T ss_pred HHHHHHHHhcCC----CceEEEEEcchhhCCCC-----------------------CCcCCEEEeCCC-cchhcCChhhH
Confidence 999999998876 57788888887664221 146888887532 22 1
Q ss_pred -ccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 228 -DLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 228 -~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
.+...|.+++++.++.- ...++++
T Consensus 320 ~~LY~~fg~~lk~~~~~w-s~~v~tt 344 (381)
T COG0116 320 AKLYREFGRTLKRLLAGW-SRYVFTT 344 (381)
T ss_pred HHHHHHHHHHHHHHhcCC-ceEEEEc
Confidence 25667778888888532 3344443
No 233
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.90 E-value=0.47 Score=44.42 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=56.8
Q ss_pred CCeEEEEcCcc-CHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHH-ccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 121 GIISLELGAGT-GLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQL-NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 121 g~~VLELG~Gt-GL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~-N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
.++|+=||||. -+++|.+++. +..|++.|+++++++..++=+.. .+. ...+.+...|-.+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~~--------- 187 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDVT--------- 187 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhccc---------
Confidence 46999999995 8999999975 46799999999999998876662 221 366777777643321
Q ss_pred CccccccccCccchhccCCeeEEEEecccc-CcccHHHHHHHHHHhccCC
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIY-SDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY-~~~~~~~l~~tl~~lL~~~ 244 (330)
.+...||+|+-|-.+. +...-..++.-|.+.+++|
T Consensus 188 --------------~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 188 --------------YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp --------------GG----SEEEE-TT-S----SHHHHHHHHHHHS-TT
T ss_pred --------------cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCC
Confidence 1235899887766665 5667788999999999765
No 234
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.69 E-value=0.042 Score=53.82 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=65.9
Q ss_pred CCCcCeEeechHHHHHHHHhhhcCCCCCC-CCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCC
Q 020158 91 IPSVGLQVWKAELVLADFVMHKMCTSSDF-NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVF 169 (330)
Q Consensus 91 ~~~~G~~vW~aa~~La~~l~~~~~~~~~~-~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~ 169 (330)
..+.|..-|++-+..-+--+. ..| .|..|.|+=||.|-.++-+++.+.+|++-|+++++++.++.|+..|...
T Consensus 224 k~DfskVYWnsRL~~Eherls-----g~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~- 297 (495)
T KOG2078|consen 224 KFDFSKVYWNSRLSHEHERLS-----GLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVD- 297 (495)
T ss_pred EEecceEEeeccchhHHHHHh-----hccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccc-
Confidence 345677789954444332222 234 4778999999999999999999999999999999999999999999863
Q ss_pred CCCCeeEEEEecCCC
Q 020158 170 SHQGSVHVRDLNWMN 184 (330)
Q Consensus 170 ~~~~~v~v~~ldW~~ 184 (330)
..++.+..+|-.+
T Consensus 298 --~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 298 --PSAIEIFNMDAKD 310 (495)
T ss_pred --hhheeeecccHHH
Confidence 3447777766443
No 235
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.42 E-value=0.42 Score=44.61 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHcc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
-...+||==|||.|-++.-+|++|..|.+.+.+--| ++..|..+|.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~M--ll~s~fiLn~ 100 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFM--LLASNFILNH 100 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHH--HHHHHHHHcc
Confidence 346799999999999999999999999999998666 5667777775
No 236
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.42 E-value=0.65 Score=45.09 Aligned_cols=60 Identities=20% Similarity=0.098 Sum_probs=45.3
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
..-.|.+|||+.|+.|-=...+|.+ +..|++.|.++.=+..++.|+.+-+. .++.+...|
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-----~nv~~~~~d 216 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-----RNVIVVNKD 216 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CceEEEecc
Confidence 3456799999999998555555544 35689999999999999999998773 445555554
No 237
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.34 E-value=0.28 Score=49.99 Aligned_cols=107 Identities=13% Similarity=-0.007 Sum_probs=67.5
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCc
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSA 197 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~ 197 (330)
.+..+||+|||.|-.-+.+|+. -..+++.|+....+..+.+.+...+ ..++.+...++......
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~~~~~~--------- 412 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLDLILND--------- 412 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHHHHHHh---------
Confidence 4678999999999777777776 4689999999877776666665544 25666655443211000
Q ss_pred cccccccCccchhccCCeeEEE--EeccccCcc------cHHHHHHHHHHhccCCCCeEEEEEee
Q 020158 198 SQERYSWNSSELKEVQRASVLL--AADVIYSDD------LTDALFHTLKRLMPLGSKKVLYLALE 254 (330)
Q Consensus 198 ~~~~~~w~~~~~~~~~~~DlIl--aaDviY~~~------~~~~l~~tl~~lL~~~~~~~i~va~~ 254 (330)
+ ...++|-|. -.|.-.-.. ..+.+++.+.++|++| +.++++.-
T Consensus 413 -----------~-~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g--G~i~~~TD 463 (506)
T PRK01544 413 -----------L-PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDN--GNLVFASD 463 (506)
T ss_pred -----------c-CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCC--CEEEEEcC
Confidence 0 113455444 222221111 5678999999999775 56777543
No 238
>PRK10742 putative methyltransferase; Provisional
Probab=94.32 E-value=0.12 Score=47.60 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=42.5
Q ss_pred CCCC--eEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHH
Q 020158 119 FNGI--ISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 119 ~~g~--~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
-.|. +|||+=||+|--|+.+|.+|.+|++.+.++.+..+++.|++.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence 3455 899999999999999999999999999999999999999987
No 239
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.29 E-value=0.41 Score=44.33 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=70.8
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
....|-|+|||-+-++. ..-..|..-|+. ..+-.|...|..+.+-
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~--------------------a~~~~V~~cDm~~vPl------------ 224 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLV--------------------AVNERVIACDMRNVPL------------ 224 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeee--------------------cCCCceeeccccCCcC------------
Confidence 45678999999874433 345678888885 1233444455544311
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeeeeCcccccchhhhccccchhhhhhh
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEKRYNFSLNDLDVVANGYSHFRSYIM 279 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~R~~f~~~~~d~v~~~y~~f~~~l~ 279 (330)
..++.|+++.+=.+. -..+..|+....++|+++ +.+||| +.++.|+- -..|.+.|.
T Consensus 225 -----------~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~g--G~l~IA-Ev~SRf~d---------v~~f~r~l~ 280 (325)
T KOG3045|consen 225 -----------EDESVDVAVFCLSLM-GTNLADFIKEANRILKPG--GLLYIA-EVKSRFSD---------VKGFVRALT 280 (325)
T ss_pred -----------ccCcccEEEeeHhhh-cccHHHHHHHHHHHhccC--ceEEEE-ehhhhccc---------HHHHHHHHH
Confidence 235799988776665 446677889999999775 678887 44444421 123555554
Q ss_pred hhhcccccccccCCCeeeEEecCC
Q 020158 280 EEGEHRRFERESFPAFVGKCIDLN 303 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~f~v~~i~~~ 303 (330)
..||.++..++.
T Consensus 281 ------------~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 281 ------------KLGFDVKHKDVS 292 (325)
T ss_pred ------------HcCCeeeehhhh
Confidence 236777777665
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.22 E-value=0.22 Score=44.90 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=51.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
++.++.|+||--|.+.+.+-+. +..+++.|+++.-++.+.+|+..|.. ..++.++..|=.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl 77 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGL 77 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCc
Confidence 4566999999999999988887 57999999999999999999999886 578888888743
No 241
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.11 E-value=0.98 Score=42.55 Aligned_cols=107 Identities=10% Similarity=0.049 Sum_probs=72.5
Q ss_pred CCCeEEEEcCccCHHHHH-HHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCC
Q 020158 120 NGIISLELGAGTGLAGIL-LSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNS 195 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~-lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~ 195 (330)
+..+|||+-||.|-.=+- +... ..+|.+.|+++..++.-+.-++.++. ...+++...|-.+...-
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f~~~dAfd~~~l------- 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARFEQGDAFDRDSL------- 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEEEecCCCCHhHh-------
Confidence 457999999999943222 2222 26899999999999999999998885 45568888886553110
Q ss_pred CccccccccCccchhccCCeeEEEEeccccCccc---HHHHHHHHHHhccCCCCeEEEE
Q 020158 196 SASQERYSWNSSELKEVQRASVLLAADVIYSDDL---TDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 196 ~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~---~~~l~~tl~~lL~~~~~~~i~v 251 (330)
......++++|.|-++-...+ +...++-+..++.++ +..||.
T Consensus 204 -------------~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg-G~lIyT 248 (311)
T PF12147_consen 204 -------------AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPG-GYLIYT 248 (311)
T ss_pred -------------hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCC-cEEEEc
Confidence 112346899999988755443 555666677777665 344444
No 242
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=93.94 E-value=1 Score=40.42 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=67.3
Q ss_pred eechHH--HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCee
Q 020158 98 VWKAEL--VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV 175 (330)
Q Consensus 98 vW~aa~--~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v 175 (330)
.||--. ...+||.. .-++..|-|+|||-+.++-.+. .+.+|..-|+-. .+-
T Consensus 54 ~WP~nPvd~iI~~l~~------~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva--------------------~n~ 106 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKK------RPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA--------------------PNP 106 (219)
T ss_dssp TSSS-HHHHHHHHHCT------S-TTS-EEEES-TT-HHHHH---S---EEEEESS---------------------SST
T ss_pred cCCCCcHHHHHHHHHh------cCCCEEEEECCCchHHHHHhcc-cCceEEEeeccC--------------------CCC
Confidence 576644 34455543 2345789999999998774332 345799999852 112
Q ss_pred EEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEEeee
Q 020158 176 HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLALEK 255 (330)
Q Consensus 176 ~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~~~ 255 (330)
.|...|..+.+- ..+..|++|.+=.+-- ..+..++....++|+++ +.+++| |.
T Consensus 107 ~Vtacdia~vPL-----------------------~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~--G~L~IA-EV 159 (219)
T PF05148_consen 107 RVTACDIANVPL-----------------------EDESVDVAVFCLSLMG-TNWPDFIREANRVLKPG--GILKIA-EV 159 (219)
T ss_dssp TEEES-TTS-S-------------------------TT-EEEEEEES---S-S-HHHHHHHHHHHEEEE--EEEEEE-EE
T ss_pred CEEEecCccCcC-----------------------CCCceeEEEEEhhhhC-CCcHHHHHHHHheeccC--cEEEEE-Ee
Confidence 244455443311 2357999998877764 45667888889999765 566665 45
Q ss_pred eCcccccchhhhccccchhhhhhhhhhcccccccccCCCeeeEEecCC
Q 020158 256 RYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAFVGKCIDLN 303 (330)
Q Consensus 256 R~~f~~~~~d~v~~~y~~f~~~l~~~~~~~~~~~~~~~~f~v~~i~~~ 303 (330)
++.|+ ....|...+. .-||.+..-+.+
T Consensus 160 ~SRf~---------~~~~F~~~~~------------~~GF~~~~~d~~ 186 (219)
T PF05148_consen 160 KSRFE---------NVKQFIKALK------------KLGFKLKSKDES 186 (219)
T ss_dssp GGG-S----------HHHHHHHHH------------CTTEEEEEEE--
T ss_pred cccCc---------CHHHHHHHHH------------HCCCeEEecccC
Confidence 54443 1345555554 237777776654
No 243
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.85 E-value=0.36 Score=39.06 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=61.2
Q ss_pred HHHHHhhhcCCCCCCCCCeEEEEcCccC-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 105 LADFVMHKMCTSSDFNGIISLELGAGTG-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 105 La~~l~~~~~~~~~~~g~~VLELG~GtG-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
+++|+.... -+ .+|+|+|.|-= -++-.++++|..|++||+++. +. ...+.+..-|-.
T Consensus 4 ~a~~iAre~-----~~-gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-----------~a-----~~g~~~v~DDit 61 (129)
T COG1255 4 VAEYIAREN-----AR-GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-----------TA-----PEGLRFVVDDIT 61 (129)
T ss_pred HHHHHHHHh-----cC-CcEEEEccchHHHHHHHHHHcCCcEEEEecccc-----------cC-----cccceEEEccCC
Confidence 566766431 23 49999998864 566677788999999999854 11 233444444544
Q ss_pred CCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 184 NPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
++ ...+--++|.+|.....+.+.+.+-++.+.-
T Consensus 62 nP----------------------------~~~iY~~A~lIYSiRpppEl~~~ildva~aV 94 (129)
T COG1255 62 NP----------------------------NISIYEGADLIYSIRPPPELQSAILDVAKAV 94 (129)
T ss_pred Cc----------------------------cHHHhhCccceeecCCCHHHHHHHHHHHHhh
Confidence 43 2345567899999888888888888887654
No 244
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=2.9 Score=37.42 Aligned_cols=166 Identities=16% Similarity=0.221 Sum_probs=94.9
Q ss_pred CeEeech--HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C-CeEEEEeCchHHHHHHHHHHHHccCCCC
Q 020158 95 GLQVWKA--ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A-WTVFLTDHGNYILDNCAKNVQLNSGVFS 170 (330)
Q Consensus 95 G~~vW~a--a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~ 170 (330)
-.++|+. |.+-|..| .-..+-..-.|.+||=|||-+|.+--..+-- + ..|++...++.+..-+-.-+..
T Consensus 50 eYR~Wnp~RSKLaAaIl-~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~------ 122 (231)
T COG1889 50 EYREWNPRRSKLAAAIL-KGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK------ 122 (231)
T ss_pred ceeeeCcchhHHHHHHH-cCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh------
Confidence 4799987 44444443 3221124457899999999999665555544 4 5799999998655333322221
Q ss_pred CCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCe-eEEEEeccccC----cccHHHHHHHHHHhccCCC
Q 020158 171 HQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRA-SVLLAADVIYS----DDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 171 ~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-DlIlaaDviY~----~~~~~~l~~tl~~lL~~~~ 245 (330)
..++--.--|-..+ ++| -+|=.-||+|. ++..+-+......+|+++
T Consensus 123 -R~Ni~PIL~DA~~P---------------------------~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~- 173 (231)
T COG1889 123 -RPNIIPILEDARKP---------------------------EKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKG- 173 (231)
T ss_pred -CCCceeeecccCCc---------------------------HHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccC-
Confidence 12222222222221 111 22223455554 567888889999999776
Q ss_pred CeEEEEEeeeeCcccccchhhhccccchhhhhhhhhhcccccccccCCCe-eeEEecCCCcCcccccccCCCceE
Q 020158 246 KKVLYLALEKRYNFSLNDLDVVANGYSHFRSYIMEEGEHRRFERESFPAF-VGKCIDLNEFPQYVREYDRGNDVE 319 (330)
Q Consensus 246 ~~~i~va~~~R~~f~~~~~d~v~~~y~~f~~~l~~~~~~~~~~~~~~~~f-~v~~i~~~~~p~~~~~yer~~~l~ 319 (330)
+.++++.+-|+- |+.++.-.-|..-+.... ..+| ..+.+++. +||+.-.+.
T Consensus 174 -G~~~i~iKArSI------dvT~dp~~vf~~ev~kL~---------~~~f~i~e~~~Le-------Pye~DH~~i 225 (231)
T COG1889 174 -GYVVIAIKARSI------DVTADPEEVFKDEVEKLE---------EGGFEILEVVDLE-------PYEKDHALI 225 (231)
T ss_pred -CeEEEEEEeecc------cccCCHHHHHHHHHHHHH---------hcCceeeEEeccC-------CcccceEEE
Confidence 446667777763 555555566776665332 2234 34556654 688764443
No 245
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.77 E-value=0.91 Score=43.47 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=65.4
Q ss_pred CCCeEEEEcCccCH-HHHHHHHh-----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEE--EEecCCCCCCCCcc
Q 020158 120 NGIISLELGAGTGL-AGILLSRV-----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV--RDLNWMNPWPPIFS 191 (330)
Q Consensus 120 ~g~~VLELG~GtGL-~gl~lA~~-----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v--~~ldW~~~~~~~~~ 191 (330)
.+..++|||||.|- +.+.+..+ ..+.+..|++.++|+.+..++..-. ...+.+ ...|+.+..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-----~p~l~v~~l~gdy~~~l----- 145 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-----FSHVRCAGLLGTYDDGL----- 145 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-----CCCeEEEEEEecHHHHH-----
Confidence 45689999999984 55555443 3579999999999999998887222 234554 334443321
Q ss_pred CCCCCccccccccCccchhccCCeeEEEEec-cccC--cccHHHHHHHHHH-hccCCCCeEEEEEee
Q 020158 192 LGNSSASQERYSWNSSELKEVQRASVLLAAD-VIYS--DDLTDALFHTLKR-LMPLGSKKVLYLALE 254 (330)
Q Consensus 192 ~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaD-viY~--~~~~~~l~~tl~~-lL~~~~~~~i~va~~ 254 (330)
.|-... .......+|+--- .|-+ +.....|++.+.+ .|.++ ..+++..-
T Consensus 146 -----------~~l~~~-~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~--d~lLiG~D 198 (319)
T TIGR03439 146 -----------AWLKRP-ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS--DSFLIGLD 198 (319)
T ss_pred -----------hhcccc-cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC--CEEEEecC
Confidence 110000 0012345554332 4433 4456678888888 88654 45666543
No 246
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.75 E-value=0.16 Score=49.68 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=64.4
Q ss_pred CCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
.+.+|||.=||+|+=||-.++- ..+|++-|+++++++.+++|+++|+... ..+.+...|-....
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~~~~v~~~DAn~ll---------- 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED---ERIEVSNMDANVLL---------- 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG---CCEEEEES-HHHHH----------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC---ceEEEehhhHHHHh----------
Confidence 4469999999999999999987 3799999999999999999999998631 14666554422110
Q ss_pred ccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEEEEE
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVLYLA 252 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i~va 252 (330)
. .....||+|=- |. -...-+|++..-+.++.+ +.+++.
T Consensus 116 ------~------~~~~~fD~IDl-DP---fGSp~pfldsA~~~v~~g--Gll~vT 153 (377)
T PF02005_consen 116 ------Y------SRQERFDVIDL-DP---FGSPAPFLDSALQAVKDG--GLLCVT 153 (377)
T ss_dssp ------C------HSTT-EEEEEE------SS--HHHHHHHHHHEEEE--EEEEEE
T ss_pred ------h------hccccCCEEEe-CC---CCCccHhHHHHHHHhhcC--CEEEEe
Confidence 0 12356887631 11 234557777777777553 555554
No 247
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=93.67 E-value=0.32 Score=46.36 Aligned_cols=128 Identities=11% Similarity=0.108 Sum_probs=72.9
Q ss_pred echHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCC-CCCeeE
Q 020158 99 WKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFS-HQGSVH 176 (330)
Q Consensus 99 W~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~-~~~~v~ 176 (330)
|=-+.+.-.|. -++..+++||||-|-=-+-.-+.| ..++++|+.+-.++.|+.....-..... ..=.+.
T Consensus 105 wIKs~LI~~y~---------~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~ 175 (389)
T KOG1975|consen 105 WIKSVLINLYT---------KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAV 175 (389)
T ss_pred HHHHHHHHHHh---------ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeE
Confidence 54555555554 356789999999984434333333 6899999999889988866543211100 001233
Q ss_pred EEEecCCCCCCCCccCCCCCccccccccCccchhccC-CeeEEEEeccccC----cccHHHHHHHHHHhccCCCCeEEEE
Q 020158 177 VRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQ-RASVLLAADVIYS----DDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 177 v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~DlIlaaDviY~----~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
+...|=.... .. +.++..+ +||+|=+-=++++ .+..+-+++.+.++|++| ++++-
T Consensus 176 f~~~Dc~~~~-----------l~-------d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG--G~FIg 235 (389)
T KOG1975|consen 176 FIAADCFKER-----------LM-------DLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG--GVFIG 235 (389)
T ss_pred EEEeccchhH-----------HH-------HhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC--cEEEE
Confidence 3333321110 00 0011122 3999988777766 346677888888999775 45555
Q ss_pred Eeee
Q 020158 252 ALEK 255 (330)
Q Consensus 252 a~~~ 255 (330)
..+.
T Consensus 236 TiPd 239 (389)
T KOG1975|consen 236 TIPD 239 (389)
T ss_pred ecCc
Confidence 4433
No 248
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.41 E-value=0.17 Score=46.05 Aligned_cols=100 Identities=17% Similarity=0.251 Sum_probs=59.9
Q ss_pred HHHHHHhhhcCCCCCC--CCCeEEEEcCccCHHHHH--HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE
Q 020158 104 VLADFVMHKMCTSSDF--NGIISLELGAGTGLAGIL--LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (330)
Q Consensus 104 ~La~~l~~~~~~~~~~--~g~~VLELG~GtGL~gl~--lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (330)
.||+.|.+.. ... ++.++||+|-|.-..=-+ .-..|.+.++||+++..+..++.|+..|..+ ...++.+.
T Consensus 63 ~laDLL~s~~---g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l---~~~I~lr~ 136 (292)
T COG3129 63 HLADLLASTS---GQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL---ERAIRLRR 136 (292)
T ss_pred HHHHHHHhcC---CCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch---hhheeEEe
Confidence 4566555442 223 456788998775422111 2233889999999999999999999999533 34444432
Q ss_pred ecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCc
Q 020158 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSD 227 (330)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~ 227 (330)
-. ..... +.+ -+...+.||..+|.-.+|..
T Consensus 137 qk---~~~~i-f~g--------------iig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 137 QK---DSDAI-FNG--------------IIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cc---Ccccc-ccc--------------cccccceeeeEecCCCcchh
Confidence 21 11000 000 01124689999999888753
No 249
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.28 E-value=0.14 Score=48.66 Aligned_cols=42 Identities=36% Similarity=0.357 Sum_probs=37.6
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh--CCeEEEEeCchHHHHHHHH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV--AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~--~~~V~~TD~~~~~L~~~~~ 160 (330)
-.|.+||=+|||. ||+.+.+|+. +.+|++||+.+.-|+.+++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 4688999999996 9999998887 5799999999999999987
No 250
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.20 E-value=0.18 Score=43.72 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=38.4
Q ss_pred chHHHHHHHHhhhcCCCCCC---CCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchH
Q 020158 100 KAELVLADFVMHKMCTSSDF---NGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNY 153 (330)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~---~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~ 153 (330)
+|+.-|.+-+... ..+ ++.+||||||++|-.+-++..++ .+|++.|+.+.
T Consensus 4 Ra~~KL~ei~~~~----~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKF----KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTT----SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHC----CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 5677777766554 223 45899999999999998888886 79999999854
No 251
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.03 E-value=0.8 Score=41.27 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=66.9
Q ss_pred chHHHHHHHHhhhcCCCCC-CCCCeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEE
Q 020158 100 KAELVLADFVMHKMCTSSD-FNGIISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHV 177 (330)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~-~~g~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v 177 (330)
+++.+|.+||......+.. -...++||+||=..-..+ +..+ ..|+..|+++ ..-.+
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns--------------------~~~~I 87 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNS--------------------QHPGI 87 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcc--cccCceeeEEeecCC--------------------CCCCc
Confidence 4899999999876421111 123699999986332221 1222 4699999972 44566
Q ss_pred EEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccH---HHHHHHHHHhccCCCC
Q 020158 178 RDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLT---DALFHTLKRLMPLGSK 246 (330)
Q Consensus 178 ~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~---~~l~~tl~~lL~~~~~ 246 (330)
.+-||.+.+-+. .+.++||+|.+|=|+-+.... -..++-..++|++++.
T Consensus 88 ~qqDFm~rplp~--------------------~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 88 LQQDFMERPLPK--------------------NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eeeccccCCCCC--------------------CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 778887753221 124689999999999664433 3466777778877654
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.90 E-value=0.64 Score=42.78 Aligned_cols=135 Identities=9% Similarity=0.021 Sum_probs=72.7
Q ss_pred CCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 121 GIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
..+|+|||||.==.++..... +.++++.|++..+++.+.+=+..-+ ....+...|-....
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~~~------------ 167 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLSDP------------ 167 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTTSH------------
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeeccC------------
Confidence 579999999977555544444 4699999999999999987766544 23344444433321
Q ss_pred ccccccCccchhccCCeeEEEEeccccCccc--HHHHHHHHHHhccCCCCeEEEEEeeeeCcccccchhhhccccchhhh
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDL--TDALFHTLKRLMPLGSKKVLYLALEKRYNFSLNDLDVVANGYSHFRS 276 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~--~~~l~~tl~~lL~~~~~~~i~va~~~R~~f~~~~~d~v~~~y~~f~~ 276 (330)
.....|+.+.-=++.--+. -...++.|..+ ....++|+++.|+-. .+. ..++..|+.
T Consensus 168 ------------~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~----~~~~~vVSfPtrSL~---gR~--~gm~~~y~~ 226 (251)
T PF07091_consen 168 ------------PKEPADLALLLKTLPCLERQRRGAGLELLDAL----RSPHVVVSFPTRSLG---GRN--KGMEQTYSA 226 (251)
T ss_dssp ------------TTSEESEEEEET-HHHHHHHSTTHHHHHHHHS----CESEEEEEEES------------TTHHHCHHH
T ss_pred ------------CCCCcchhhHHHHHHHHHHHhcchHHHHHHHh----CCCeEEEeccccccc---cCc--cccccCHHH
Confidence 1246788886544422111 11223333333 235688898888532 221 123566777
Q ss_pred hhhhhhcccccccccCCCeeeEEecC
Q 020158 277 YIMEEGEHRRFERESFPAFVGKCIDL 302 (330)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~f~v~~i~~ 302 (330)
++.... ...+|.++++..
T Consensus 227 ~fe~~~--------~~~~~~~~~~~~ 244 (251)
T PF07091_consen 227 WFEALA--------AERGWIVDRLTF 244 (251)
T ss_dssp HHHHHC--------CTTCEEEEEEEE
T ss_pred HHHHhc--------ccCCceeeeeec
Confidence 776432 135677777653
No 253
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.47 E-value=0.2 Score=50.22 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=75.6
Q ss_pred CCCcCeEeechHHHHHHHHhhhcCCCCCCCC---CeEEEEcCccCHHHHHHHHhCCeEEEE---eCchHHHHHHHHH-HH
Q 020158 91 IPSVGLQVWKAELVLADFVMHKMCTSSDFNG---IISLELGAGTGLAGILLSRVAWTVFLT---DHGNYILDNCAKN-VQ 163 (330)
Q Consensus 91 ~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g---~~VLELG~GtGL~gl~lA~~~~~V~~T---D~~~~~L~~~~~N-v~ 163 (330)
.++.|.+...++....+.|.+-. +....+ +.+||+|||+|..|..+..++-.++.+ |.++..++.+.+. +-
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~--~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp 164 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMI--PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP 164 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHh--hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc
Confidence 35678888889888888877654 221232 478999999999998888876544443 3333223322211 10
Q ss_pred HccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccC-cccHHHHHHHHHHhcc
Q 020158 164 LNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYS-DDLTDALFHTLKRLMP 242 (330)
Q Consensus 164 ~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~-~~~~~~l~~tl~~lL~ 242 (330)
.- .+.+-.+.|.+ ....||+|=|+.|+-. ...-..++-.+.++|+
T Consensus 165 a~------~~~~~s~rLPf----------------------------p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR 210 (506)
T PF03141_consen 165 AM------IGVLGSQRLPF----------------------------PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR 210 (506)
T ss_pred hh------hhhhccccccC----------------------------Cccchhhhhcccccccchhcccceeehhhhhhc
Confidence 00 01111122221 1247899988888854 2222457778889998
Q ss_pred CCCCeEEEEEeeeeC
Q 020158 243 LGSKKVLYLALEKRY 257 (330)
Q Consensus 243 ~~~~~~i~va~~~R~ 257 (330)
+| +.++++.+.-+
T Consensus 211 pG--Gyfv~S~ppv~ 223 (506)
T PF03141_consen 211 PG--GYFVLSGPPVY 223 (506)
T ss_pred cC--ceEEecCCccc
Confidence 75 56777665544
No 254
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=92.43 E-value=2.1 Score=40.03 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=48.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
+...|.+|||-|.|.|-.|.++|+.- .+++--|++..-.+.+.+-.+..+. .+++.+..-|--
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi----~~~vt~~hrDVc 167 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI----GDNVTVTHRDVC 167 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----CcceEEEEeecc
Confidence 45679999999999999999999872 5899999997777777777776663 466666655543
No 255
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.07 E-value=0.5 Score=38.96 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHhhhcCCCCCCCCCeEEEEcCcc-CHHHHHHHHhCCeEEEEeCchH
Q 020158 104 VLADFVMHKMCTSSDFNGIISLELGAGT-GLAGILLSRVAWTVFLTDHGNY 153 (330)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~Gt-GL~gl~lA~~~~~V~~TD~~~~ 153 (330)
.+|+|+..+. +..+|+|+|-|- --++..++..|..|++||+++.
T Consensus 3 ~~a~~ia~~~------~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARLN------NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHS-------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred hHHHHHHHhC------CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence 5789988652 334999999996 4677788888999999999965
No 256
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.58 E-value=0.32 Score=47.03 Aligned_cols=46 Identities=28% Similarity=0.273 Sum_probs=42.5
Q ss_pred CCeEEEEcCccCHHHHHHHHh-CC-eEEEEeCchHHHHHHHHHHHHcc
Q 020158 121 GIISLELGAGTGLAGILLSRV-AW-TVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~-~~-~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
.++|+|-=||||+=||-.|.- +. +|++-|++|++.+.++.|+.+|.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~ 100 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS 100 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC
Confidence 789999999999999999987 34 89999999999999999999994
No 257
>KOG2730 consensus Methylase [General function prediction only]
Probab=91.31 E-value=0.36 Score=43.60 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
+..+|..+... +..-.|+|.=||.|--.+..|..+..|++.|++|.-+..++.|++.-+. ..++.+...|
T Consensus 82 a~~iA~~v~~~------~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD 151 (263)
T KOG2730|consen 82 AEHIANRVVAC------MNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV----PDRITFICGD 151 (263)
T ss_pred HHHHHHHHHHh------cCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC----CceeEEEech
Confidence 45555555433 2556899999999988999999999999999999999999999999886 5699999999
Q ss_pred CCCC
Q 020158 182 WMNP 185 (330)
Q Consensus 182 W~~~ 185 (330)
|.+.
T Consensus 152 ~ld~ 155 (263)
T KOG2730|consen 152 FLDL 155 (263)
T ss_pred HHHH
Confidence 9875
No 258
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=90.89 E-value=0.46 Score=42.82 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=40.8
Q ss_pred CCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C---CeEEEEeCchHHHHHHHHHHHHc
Q 020158 92 PSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A---WTVFLTDHGNYILDNCAKNVQLN 165 (330)
Q Consensus 92 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~---~~V~~TD~~~~~L~~~~~Nv~~N 165 (330)
+..++.|--|+.++.+-+... ..-.+.++-|=.||.|.+--+++.+ + ..|+++|+++++|+.+++|+.+-
T Consensus 27 G~p~FPVRLAsEi~qR~l~~l----~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 27 GFPAFPVRLASEIFQRALHYL----EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp TB----HHHHHHHHHHHHCTS----SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CCCCccHHHHHHHHHHHHHhh----cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 344555544444444433211 1123468999999999444444433 2 58999999999999999999764
No 259
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.86 E-value=0.23 Score=47.84 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=57.9
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccC
Q 020158 116 SSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL 192 (330)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~ 192 (330)
.++|..++|||.|+|.|....++-.. -.++++...++ .|..+-..+..|. .....||....-..
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv---------~t~~td~r~s~vt~--- 175 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENV---------STEKTDWRASDVTE--- 175 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhc---------ccccCCCCCCccch---
Confidence 36789999999999998654433332 24666666664 2333333343333 22336666532110
Q ss_pred CCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhc
Q 020158 193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLM 241 (330)
Q Consensus 193 ~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL 241 (330)
+ ...+.....|++|++.|=+-.+..-.++...|.++.
T Consensus 176 -d-----------Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw 212 (484)
T COG5459 176 -D-----------RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLW 212 (484)
T ss_pred -h-----------ccCCCccceeehhhhhhhhccccCcchHHHHHHHHH
Confidence 0 011223457999999998887766665555555544
No 260
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=89.65 E-value=0.92 Score=44.04 Aligned_cols=60 Identities=28% Similarity=0.309 Sum_probs=46.7
Q ss_pred CCeEEEEcCccCHHHHHHHHhC--CeEEEEeCchHHHHHHHHHHHH---ccCCCCCCCeeEEEEec
Q 020158 121 GIISLELGAGTGLAGILLSRVA--WTVFLTDHGNYILDNCAKNVQL---NSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~~--~~V~~TD~~~~~L~~~~~Nv~~---N~~~~~~~~~v~v~~ld 181 (330)
-.+||=||-|-||..--+.+.- .+|+..|++|.|++..++|..+ |...+. ..++++..-|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~-dpRv~Vv~dD 354 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFS-DPRVTVVNDD 354 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCcc-CCeeEEEecc
Confidence 4689999999999988888873 6999999999999999977643 554443 4566665544
No 261
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.22 E-value=1.1 Score=39.43 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=42.3
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHH
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~ 160 (330)
-.+-|.+.+.... ..+|..|||-=||+|-+++++.+++++.++.|++++..+.+++
T Consensus 176 kP~~l~~~lI~~~----t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAS----TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHH----S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhh----hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3456666666552 3568899999999999999999999999999999998887753
No 262
>PRK11524 putative methyltransferase; Provisional
Probab=88.38 E-value=1.9 Score=40.37 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=48.6
Q ss_pred HHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHH
Q 020158 103 LVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 103 ~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
+-|.+.|... ...+|..|||-=||+|-+++++.+++.+.++.|++++..+.+++.+..
T Consensus 195 ~~L~erlI~~----~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILA----SSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHH----hCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 4455555544 346789999999999999999999999999999999999999888754
No 263
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=87.65 E-value=4.1 Score=38.22 Aligned_cols=77 Identities=16% Similarity=0.060 Sum_probs=58.2
Q ss_pred cCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCC
Q 020158 94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFS 170 (330)
Q Consensus 94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~ 170 (330)
.-..+++.+-.++-.++.. ..|.+|||+.||.|-=+..+|.. ...|++.|+++.=+..++.|+..-+
T Consensus 65 G~~~vQd~sS~l~~~~L~~------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---- 134 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---- 134 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----
T ss_pred CcEEecccccccccccccc------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----
Confidence 3456888877777666532 46788999999999777676665 2599999999999999999999876
Q ss_pred CCCeeEEEEec
Q 020158 171 HQGSVHVRDLN 181 (330)
Q Consensus 171 ~~~~v~v~~ld 181 (330)
..++.+...|
T Consensus 135 -~~~v~~~~~D 144 (283)
T PF01189_consen 135 -VFNVIVINAD 144 (283)
T ss_dssp --SSEEEEESH
T ss_pred -CceEEEEeec
Confidence 3556655533
No 264
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=87.36 E-value=2.3 Score=41.28 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh----------CCeEEEEeCchHHHHHHHHHHH
Q 020158 102 ELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV----------AWTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 102 a~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~----------~~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
+-++|.|+.+.-..-.......++|||+|+|...--+.+. +.++.....|+.+...=+.+++
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 4567777766531112233468999999999666443332 4689999999876655555543
No 265
>PRK13699 putative methylase; Provisional
Probab=87.34 E-value=2.8 Score=38.02 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=46.1
Q ss_pred HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHH
Q 020158 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
-|.+.+... ..-+|..|||-=||+|-+++++.+.+.+.++.|++++..+.+.+.+..
T Consensus 151 ~l~~~~i~~----~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 151 TSLQPLIES----FTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHH----hCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 444544443 224788999999999999999999999999999999988888777755
No 266
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.07 E-value=1.1 Score=45.55 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=37.1
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchHHHHHHHH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~~L~~~~~ 160 (330)
...+.+|+=+|||. |+.++.+|+. |+.|+++|.+++-++.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35689999999996 9999988876 8899999999988887764
No 267
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.40 E-value=1.5 Score=39.17 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=47.8
Q ss_pred chHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhC-C--eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeE
Q 020158 100 KAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVA-W--TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVH 176 (330)
Q Consensus 100 ~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~-~--~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~ 176 (330)
+|+.-|-+....+ .-.-.|.+|+||||-.|--+-++++.. . .|++.|+.|- .+...|.
T Consensus 28 RAa~KL~el~~k~---~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~----------------~~~~~V~ 88 (205)
T COG0293 28 RAAYKLLELNEKF---KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM----------------KPIPGVI 88 (205)
T ss_pred hHHHHHHHHHHhc---CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc----------------ccCCCce
Confidence 4666666655444 123357999999999999999999883 2 4999999752 1134588
Q ss_pred EEEecCCCC
Q 020158 177 VRDLNWMNP 185 (330)
Q Consensus 177 v~~ldW~~~ 185 (330)
+.+.|..+.
T Consensus 89 ~iq~d~~~~ 97 (205)
T COG0293 89 FLQGDITDE 97 (205)
T ss_pred EEeeeccCc
Confidence 888888775
No 268
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.28 E-value=1.1 Score=35.85 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=26.1
Q ss_pred CCeEEEEcCccCHHHHHHHHhCCeEEEEeCc
Q 020158 121 GIISLELGAGTGLAGILLSRVAWTVFLTDHG 151 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~ 151 (330)
...-+|||||.||+--++.+-|..=.+.|.-
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 3468999999999999999888877787764
No 269
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.04 E-value=1.4 Score=42.55 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=35.8
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh--CCeEEEEeCchHHHHHHHH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV--AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~--~~~V~~TD~~~~~L~~~~~ 160 (330)
..+.+|+=+|||. ||+++.+|+. +.+|+++|.+++=|+++++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 4455999999996 9999888887 4799999999998888875
No 270
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.49 E-value=6 Score=39.76 Aligned_cols=101 Identities=13% Similarity=0.239 Sum_probs=63.7
Q ss_pred CeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHH-HHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNC-AKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~-~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
.++|.||||.--...-+-+-| ..|+.+|+++-+++.+ .+|+.. ..-..+...|-....
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~------------- 109 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLV------------- 109 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecchhcc-------------
Confidence 489999999987777776667 5899999998666544 455522 233455555433321
Q ss_pred cccccCccchhccCCeeEEEE----------eccccCcccHHHHHHHHHHhccCCCCeEEEEEe
Q 020158 200 ERYSWNSSELKEVQRASVLLA----------ADVIYSDDLTDALFHTLKRLMPLGSKKVLYLAL 253 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIla----------aDviY~~~~~~~l~~tl~~lL~~~~~~~i~va~ 253 (330)
+ +.+.||+||. ++-+++......-+.-+.++++++++ .+.+++
T Consensus 110 ---------f-edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk-~~svtl 162 (482)
T KOG2352|consen 110 ---------F-EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK-YISVTL 162 (482)
T ss_pred ---------C-CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE-EEEEEe
Confidence 0 2346787775 33444444556677788888887654 344444
No 271
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=84.84 E-value=0.56 Score=44.24 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=51.9
Q ss_pred eEeechHHHHHHH--HhhhcC-CCCCCCCCeEEEEcCccCHHHH-HHHHh-CCeEEEEeCchHHHHHHHHHHHHccC
Q 020158 96 LQVWKAELVLADF--VMHKMC-TSSDFNGIISLELGAGTGLAGI-LLSRV-AWTVFLTDHGNYILDNCAKNVQLNSG 167 (330)
Q Consensus 96 ~~vW~aa~~La~~--l~~~~~-~~~~~~g~~VLELG~GtGL~gl-~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~ 167 (330)
.+.|++...|=.+ +.+... ..-...|-.|.||=||.|...+ .+-.. ++.|++.|.+|..++.+++|++.|..
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 5788887765443 111100 0122356789999999998777 55555 57999999999999999999999964
No 272
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=84.11 E-value=2 Score=40.05 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=35.0
Q ss_pred eEEEEcCccCHHHHHHHHhCC-eEEEEeCchHHHHHHHHHH
Q 020158 123 ISLELGAGTGLAGILLSRVAW-TVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~~~-~V~~TD~~~~~L~~~~~Nv 162 (330)
+|+||-||+|-.++.+...|. .|++.|+++.+++..+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhC
Confidence 699999999999888887775 5788999999999988887
No 273
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=83.75 E-value=1.5 Score=42.29 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=48.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHH-------HHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILD-------NCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~-------~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
-.|+-|.|==.|||-.=+.+|..|+-|++||++-.++. .++.|++.-+.. ..-+.+...|..+.
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADFSNP 277 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecccCc
Confidence 46889999999999888889999999999999977766 455666655532 33456666776654
No 274
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=83.53 E-value=1.5 Score=40.24 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=29.4
Q ss_pred CCeEEEEcCccCHHHHHHHHh----------CCeEEEEeCchHHHHHHHHHHH
Q 020158 121 GIISLELGAGTGLAGILLSRV----------AWTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~----------~~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
..+|+|+|+|.|..+.-+... ..++++.+.+|.+.+.-++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 369999999999766655543 1479999999877666555553
No 275
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=81.64 E-value=3.4 Score=36.00 Aligned_cols=104 Identities=24% Similarity=0.356 Sum_probs=53.8
Q ss_pred eEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcccc
Q 020158 123 ISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (330)
Q Consensus 123 ~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (330)
+|-=+|+|+ | -.+..+|..|.+|++.|.+++.++.+++.+..+-......+.+. ... ......
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~-------~~~--------~~~~~~ 65 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLS-------QEE--------ADAALA 65 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTT-------HHH--------HHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccch-------hhh--------hhhhhh
Confidence 355688886 4 44555666699999999999998888777665321000000000 000 000000
Q ss_pred ccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccC
Q 020158 201 RYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (330)
Q Consensus 201 ~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~ 243 (330)
...+. .+++.....|+|+=+ +.-+.+.-..+++.|..++.+
T Consensus 66 ~i~~~-~dl~~~~~adlViEa-i~E~l~~K~~~~~~l~~~~~~ 106 (180)
T PF02737_consen 66 RISFT-TDLEEAVDADLVIEA-IPEDLELKQELFAELDEICPP 106 (180)
T ss_dssp TEEEE-SSGGGGCTESEEEE--S-SSHHHHHHHHHHHHCCS-T
T ss_pred hcccc-cCHHHHhhhheehhh-ccccHHHHHHHHHHHHHHhCC
Confidence 01111 113333478988865 344556677888888888854
No 276
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=81.20 E-value=9.4 Score=36.80 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=61.1
Q ss_pred CeEEEEcCccC-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcccc
Q 020158 122 IISLELGAGTG-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (330)
Q Consensus 122 ~~VLELG~GtG-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (330)
...+|+|+|+| +++.++. .-.+|-+++....-+...+.+.. - + |.-...|....
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~-------g-V~~v~gdmfq~--------------- 233 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P-------G-VEHVAGDMFQD--------------- 233 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C-------C-cceeccccccc---------------
Confidence 67899999999 5556666 55568888887544444444442 1 1 33333443332
Q ss_pred ccccCccchhccCCeeEEEEeccccC--cccHHHHHHHHHHhccCCCCeEEEE
Q 020158 201 RYSWNSSELKEVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 201 ~~~w~~~~~~~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
..+-|+|+.-=|+++ ++..-.+++.+.+.|.+++ +++++
T Consensus 234 -----------~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~G-kIiv~ 274 (342)
T KOG3178|consen 234 -----------TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGG-KIIVV 274 (342)
T ss_pred -----------CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCC-EEEEE
Confidence 125679999999988 6678889999999998853 44444
No 277
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=80.57 E-value=9.8 Score=35.48 Aligned_cols=114 Identities=19% Similarity=0.233 Sum_probs=61.6
Q ss_pred CeEEEEcCcc---CHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCC
Q 020158 122 IISLELGAGT---GLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSS 196 (330)
Q Consensus 122 ~~VLELG~Gt---GL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~ 196 (330)
...||||||. |-+=-++.+. .++|+-+|.+|-++...+.-+.-|. .+...+...|..++.....
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~------ 138 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILA------ 138 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHC------
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhc------
Confidence 4689999994 3333333222 5899999999999988887776654 3567888888776522110
Q ss_pred ccccccccCccchhccCCeeEEEEeccccC---cccHHHHHHHHHHhccCCCCeEEEEEee
Q 020158 197 ASQERYSWNSSELKEVQRASVLLAADVIYS---DDLTDALFHTLKRLMPLGSKKVLYLALE 254 (330)
Q Consensus 197 ~~~~~~~w~~~~~~~~~~~DlIlaaDviY~---~~~~~~l~~tl~~lL~~~~~~~i~va~~ 254 (330)
.+.- ...+ +..+.=-|+...++++ .+....+++++...|.+| ..+.++.-
T Consensus 139 ~p~~-----~~~l-D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG--S~L~ish~ 191 (267)
T PF04672_consen 139 HPEV-----RGLL-DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG--SYLAISHA 191 (267)
T ss_dssp SHHH-----HCC---TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT---EEEEEEE
T ss_pred CHHH-----HhcC-CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC--ceEEEEec
Confidence 0000 0001 1233445677777766 357888889999988775 45556543
No 278
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.39 E-value=5.5 Score=39.20 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=36.7
Q ss_pred CeEEEEcCccCHHHHHH----HHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 122 IISLELGAGTGLAGILL----SRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~l----A~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++||=|||| .+|-.+ |+.+ .+|++.|.+.+-.+.+..+. ..++++..+|-.+.
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADV 59 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---------cccceeEEecccCh
Confidence 579999995 444333 3445 79999999977666555443 34788888887765
No 279
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=78.75 E-value=31 Score=35.77 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=41.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCC---CCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVF---SHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~---~~~~~v~v~~ldW~~~ 185 (330)
....|++||=.|+. |.+|..+++ .|.+|++.+.+.+-+..+..++..+.... ....++.+...|..+.
T Consensus 76 ~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~ 150 (576)
T PLN03209 76 DTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKP 150 (576)
T ss_pred ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCH
Confidence 45678999999985 555655443 37899999998766655554443221100 0013577777777653
No 280
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=78.42 E-value=6.8 Score=38.25 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=68.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHH-HHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNC-AKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGN 194 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~-~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~ 194 (330)
..+.+..++++|||.|-+....+.. +..++..|+++.-+... ..++..+-. .+..+ ...|--..+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~-~~~~~~~~~------- 173 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-----NKCNF-VVADFGKMP------- 173 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-----hhcce-ehhhhhcCC-------
Confidence 3456668999999999888888877 57899999987433222 222222211 11222 232222111
Q ss_pred CCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 195 SSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 195 ~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
-+...||.+-+.|++-+...+..+++.+.+.+++|+
T Consensus 174 ---------------fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 174 ---------------FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGG 209 (364)
T ss_pred ---------------CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCc
Confidence 123579999999999999999999999999998864
No 281
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=78.11 E-value=3.8 Score=40.05 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=30.6
Q ss_pred CCCC-CeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHH
Q 020158 118 DFNG-IISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILD 156 (330)
Q Consensus 118 ~~~g-~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~ 156 (330)
+|.| ..|+|+|+|.|.++-+++-. |..|++.|.+....+
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ 190 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVE 190 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHH
Confidence 3444 58999999999888877755 889999999954433
No 282
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=78.11 E-value=24 Score=34.68 Aligned_cols=65 Identities=22% Similarity=0.147 Sum_probs=42.7
Q ss_pred CeEeechHH-HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccC
Q 020158 95 GLQVWKAEL-VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSG 167 (330)
Q Consensus 95 G~~vW~aa~-~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~ 167 (330)
-+|-|+||- +|-+++... ...+ +||=||=.-|.++..++..+.. ..+|-- -.-..++.|+.+|+.
T Consensus 24 ~l~awdaade~ll~~~~~~-----~~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~-~~~~~~~~n~~~n~~ 89 (378)
T PRK15001 24 PLQAWEAADEYLLQQLDDT-----EIRG-PVLILNDAFGALSCALAEHKPY-SIGDSY-ISELATRENLRLNGI 89 (378)
T ss_pred cccccccHHHHHHHHHhhc-----ccCC-CEEEEcCchhHHHHHHHhCCCC-eeehHH-HHHHHHHHHHHHcCC
Confidence 489999975 333333321 1223 7999999999999888865443 345542 334567899999974
No 283
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.73 E-value=16 Score=32.27 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..+++||=.|++ |.+|..+++ .|.+|++++.++.-+......+... ..++.+...|+.+.
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~ 67 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA------GGKARARQVDVRDR 67 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 567899988875 555655544 3789999999876555555444332 24577888888764
No 284
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.24 E-value=3 Score=36.54 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=20.9
Q ss_pred eEEEEcCcc-CH-HHHHHHHhCCeEEEEeCchHHHHHHH
Q 020158 123 ISLELGAGT-GL-AGILLSRVAWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 123 ~VLELG~Gt-GL-~gl~lA~~~~~V~~TD~~~~~L~~~~ 159 (330)
+|-=+|.|- |+ .+..+|..|.+|++.|.+++.++.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 444555552 43 23445555899999999988776554
No 285
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.85 E-value=13 Score=35.28 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=45.9
Q ss_pred CCCCCCCeEEEEcCccCH---HHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 116 SSDFNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 116 ~~~~~g~~VLELG~GtGL---~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
...+.|+.||==|+|.|+ .++-+|++|+++++.|++.+-.....+++..+ +.++....|-.+.
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~-------g~~~~y~cdis~~ 98 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI-------GEAKAYTCDISDR 98 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc-------CceeEEEecCCCH
Confidence 356889999999999984 56667778899999999986665555555443 2456666665554
No 286
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=73.70 E-value=62 Score=29.24 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=34.3
Q ss_pred HHHHhhhcCCCCCCCCCeEEEEcCccC----HHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHc
Q 020158 106 ADFVMHKMCTSSDFNGIISLELGAGTG----LAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLN 165 (330)
Q Consensus 106 a~~l~~~~~~~~~~~g~~VLELG~GtG----L~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N 165 (330)
|+||..-. .-.+-+.++|..|+-| .++|++|.+ |.+++|.--+++-+...++.+...
T Consensus 30 aEfISAlA---AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~ 92 (218)
T PF07279_consen 30 AEFISALA---AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA 92 (218)
T ss_pred HHHHHHHh---ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc
Confidence 45554432 3356688999977644 334444443 678888877766666666666443
No 287
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=72.67 E-value=8.7 Score=31.81 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=27.9
Q ss_pred EEcCccC--HHHHHHH--Hh--CCeEEEEeCchHHHHHHHHH--HHHccC
Q 020158 126 ELGAGTG--LAGILLS--RV--AWTVFLTDHGNYILDNCAKN--VQLNSG 167 (330)
Q Consensus 126 ELG~GtG--L~gl~lA--~~--~~~V~~TD~~~~~L~~~~~N--v~~N~~ 167 (330)
|+||..| -..+..+ .. +.+|++.+.+|..++.+++| +.+|..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 7999999 3333332 23 47899999999999999999 888853
No 288
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=72.58 E-value=2.9 Score=36.31 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=39.3
Q ss_pred CCCeEEEEcCccC-HHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCC
Q 020158 120 NGIISLELGAGTG-LAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFS 170 (330)
Q Consensus 120 ~g~~VLELG~GtG-L~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~ 170 (330)
.+.+-+|+|+..| .+|+++... ..++++.+.-.+|-..++.|+++|..+..
T Consensus 79 hdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnplve 131 (286)
T PF05575_consen 79 HDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNNPLVE 131 (286)
T ss_pred CCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCCccee
Confidence 4568999999999 666655444 35788888777888999999999986543
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=72.57 E-value=11 Score=36.50 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCAKN 161 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~~N 161 (330)
...+|.+||.+|||. |...+.+|+. |. +|++||.+++.++.++..
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 345688999999886 7777777766 54 699999998888877754
No 290
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.54 E-value=9.3 Score=40.68 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=60.7
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
++|-=||+|+ | -.+..+|..|..|++.|.+++.++.....+..+-......+.+.-...+ ...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~---------------~~~ 378 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMA---------------GVL 378 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHH---------------HHH
Confidence 5788999998 3 4455567779999999999998887766654432100000111000000 000
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccC
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~ 243 (330)
.....+ .++......|+||=| +.-+.+.-..+++.|..++++
T Consensus 379 ~~i~~~-~~~~~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~ 420 (715)
T PRK11730 379 SSIRPT-LDYAGFERVDVVVEA-VVENPKVKAAVLAEVEQKVRE 420 (715)
T ss_pred hCeEEe-CCHHHhcCCCEEEec-ccCcHHHHHHHHHHHHhhCCC
Confidence 000000 012234578888876 666677778888888888854
No 291
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=72.38 E-value=24 Score=31.58 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=40.5
Q ss_pred CCCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++||=.|+. |-+|..+++ .|.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 7 ~~~~k~vlItGa~-g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~D~~~~ 71 (255)
T PRK07523 7 DLTGRRALVTGSS-QGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ------GLSAHALAFDVTDH 71 (255)
T ss_pred CCCCCEEEEECCc-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CceEEEEEccCCCH
Confidence 3678999999964 445555544 3789999999876665555555332 23466667776654
No 292
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=71.61 E-value=9.9 Score=31.28 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCchHHHHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv 162 (330)
..+++++||=+|+|- | .+...++..| .+|+++..+.+-.+.+...+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 357899999999984 2 3333344445 56999999976555555555
No 293
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.43 E-value=28 Score=31.01 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=41.0
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+.+++||=.|+ +|-+|..+++. |.+|++++.+++-++.+...+... ..++.+...|..+.
T Consensus 6 ~~~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 70 (258)
T PRK06949 6 NLEGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE------GGAAHVVSLDVTDY 70 (258)
T ss_pred CCCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCH
Confidence 467899999995 44455544443 789999999987776665554332 24567777776653
No 294
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=71.29 E-value=12 Score=37.15 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~~L~~~~ 159 (330)
..+.|++|+=+|+|. |+....+++. |.+|+++|.++.-+..++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 457899999999995 7555544443 789999999976555444
No 295
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=71.27 E-value=4.9 Score=32.11 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=26.0
Q ss_pred ccCHHHHHHHHh-CCeEEEEeCchHHHHHHHH
Q 020158 130 GTGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 130 GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~ 160 (330)
|.|+..+.+|+. |.+|+++|.++.-++.+++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 578888888876 8999999999887777764
No 296
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=70.77 E-value=15 Score=34.88 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~~L~~~~ 159 (330)
....|.+||=+|||. |+..+.+|+. |.+|+++|.+++-++.++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 345688999999964 6666666665 678999999988777664
No 297
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=70.62 E-value=1.8 Score=43.55 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=44.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSG 167 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~ 167 (330)
-++.+|||-=|+|||=+|-.|+. ..+|++-|.++..++.+++|+++|+.
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v 159 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV 159 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc
Confidence 46779999999999999999987 36899999999999999999999953
No 298
>PRK08703 short chain dehydrogenase; Provisional
Probab=70.60 E-value=24 Score=31.24 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=38.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
.+++++||=.||+ |.+|..+++ .|.+|++++.+++-++.+...+.... ...+.+...|..+
T Consensus 3 ~l~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~ 67 (239)
T PRK08703 3 TLSDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-----HPEPFAIRFDLMS 67 (239)
T ss_pred CCCCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-----CCCcceEEeeecc
Confidence 3678999999964 444544443 37899999999876666555554322 1234455666543
No 299
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.55 E-value=11 Score=40.30 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=61.7
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
++|-=+|+|+ | -.+..+|..|..|++.|.+++.++..+.++..+-......+.++-...+- ..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------~~ 378 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAG---------------VL 378 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH---------------HH
Confidence 4788899997 3 44445666799999999999988887766654321000001110000000 00
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccC
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~ 243 (330)
..+..+ .+.......|+||=| |.-+.+.-..+++.|..++++
T Consensus 379 ~~i~~~-~~~~~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~ 420 (714)
T TIGR02437 379 NGITPT-LSYAGFDNVDIVVEA-VVENPKVKAAVLAEVEQHVRE 420 (714)
T ss_pred hCeEEe-CCHHHhcCCCEEEEc-CcccHHHHHHHHHHHHhhCCC
Confidence 000000 012234678999977 777777888899999998865
No 300
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=70.54 E-value=16 Score=34.57 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHHH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCAK 160 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~~ 160 (330)
..+|.+||=.|||. |+..+.+|+. |. +|+++|.+++-++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 34688999999873 6666666665 55 79999999887776653
No 301
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=70.52 E-value=28 Score=31.22 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=42.2
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++||=.|+ +|.+|..+++. |.+|++++.+++-++.+...+..+ ..++.+...|..+.
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~Dl~d~ 73 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL------GIDALWIAADVADE 73 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEccCCCH
Confidence 367899999995 55556665554 789999999876666555555432 24566778887764
No 302
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=70.49 E-value=15 Score=33.72 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh-CCe-EEEEeCchHHHHHHHH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV-AWT-VFLTDHGNYILDNCAK 160 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~-~~~-V~~TD~~~~~L~~~~~ 160 (330)
.+|.+||=.|+|. |+..+.+|+. |.+ |+++|.+++-++.+++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4788999998874 6666666655 554 9999988776665543
No 303
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=70.34 E-value=35 Score=29.62 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcC-c-cC-HHHHHHHHhCCeEEEEeCchHHHHHHHHHH
Q 020158 117 SDFNGIISLELGA-G-TG-LAGILLSRVAWTVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 117 ~~~~g~~VLELG~-G-tG-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv 162 (330)
..+++++|+=+|+ | .| .....++..+.+|++++.+++-++.+...+
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 4578999999996 3 34 233344445789999998876555544444
No 304
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=70.29 E-value=5.8 Score=35.99 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHH
Q 020158 104 VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 104 ~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~ 159 (330)
-|+.+|.+.. |.. ...+++|+=||+|.+++.+...+.+|++-|+++.+....+
T Consensus 7 ~l~~~I~~~i--p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELI--PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS---S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHc--CCC-CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 3567777764 222 6789999999999999999888999999999986655444
No 305
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=70.29 E-value=82 Score=29.22 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=48.4
Q ss_pred CCCCCCeEEEEcCccCHH---HHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLA---GILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~---gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..+.|+.+|-=|+..|+- ...+|+.|++|+.++.+++-++.+..-....... ..++.....|-.+.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~ 72 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT---GGKVLAIVCDVSKE 72 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCeeEEEECcCCCH
Confidence 468999999999998854 4566777999999999998887777665554321 35566777776543
No 306
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=70.25 E-value=28 Score=31.11 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=43.0
Q ss_pred CCCCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..+.+++||=.|++.|+-.-+ +++.|.+|++++.+++.++.+...+..++ .++.+...|..+.
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~ 72 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIADE 72 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCH
Confidence 347899999999766553322 23348899999999876666665554432 4577778887764
No 307
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=70.21 E-value=5.6 Score=37.34 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=72.1
Q ss_pred ccccCCCCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCH-HHHHHHHhCCeEEEEeCchHHHHHHHHHHHH
Q 020158 86 NITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGL-AGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 86 ~~~t~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL-~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
.+++....+-...|+-..-+.+. . -.|-.+++.|||-|- .+.- -...+++.|++..++.-+++-
T Consensus 20 ~ia~~fs~tr~~~Wp~v~qfl~~---~------~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~--- 84 (293)
T KOG1331|consen 20 KIATHFSATRAAPWPMVRQFLDS---Q------PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS--- 84 (293)
T ss_pred HhhhhccccccCccHHHHHHHhc---c------CCcceeeecccCCcccCcCC---CcceeeecchhhhhccccccC---
Confidence 34455667888999976544443 2 237789999999983 2221 123578889886666554421
Q ss_pred ccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHH---HHHHHHHHhc
Q 020158 165 NSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTD---ALFHTLKRLM 241 (330)
Q Consensus 165 N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~---~l~~tl~~lL 241 (330)
+...+..-|-.+.. .....||.+|..-|+++..... ..++.+.+.+
T Consensus 85 --------~~~~~~~ad~l~~p-----------------------~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~l 133 (293)
T KOG1331|consen 85 --------GGDNVCRADALKLP-----------------------FREESFDAALSIAVIHHLSTRERRERALEELLRVL 133 (293)
T ss_pred --------CCceeehhhhhcCC-----------------------CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 11011111111110 0235799999999999866544 4555566667
Q ss_pred cCCCCeEEEE
Q 020158 242 PLGSKKVLYL 251 (330)
Q Consensus 242 ~~~~~~~i~v 251 (330)
++++...+|+
T Consensus 134 rpgg~~lvyv 143 (293)
T KOG1331|consen 134 RPGGNALVYV 143 (293)
T ss_pred cCCCceEEEE
Confidence 7888878876
No 308
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=70.05 E-value=11 Score=32.53 Aligned_cols=50 Identities=20% Similarity=0.088 Sum_probs=37.1
Q ss_pred EeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCc-c-CH-HHHHHHHhCCeEEEEeCch
Q 020158 97 QVWKAELVLADFVMHKMCTSSDFNGIISLELGAG-T-GL-AGILLSRVAWTVFLTDHGN 152 (330)
Q Consensus 97 ~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~G-t-GL-~gl~lA~~~~~V~~TD~~~ 152 (330)
.+|.+++-+++.+ ...++|++||=+|+| + |. +.-.+...|.+|+.++...
T Consensus 26 ~~~~a~v~l~~~~------~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 26 CTPAGILELLKRY------GIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred ChHHHHHHHHHHc------CCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 3667777766654 245899999999999 3 75 5556666678899999874
No 309
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=69.38 E-value=8.3 Score=36.72 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh---CCeEEEEeCchHHHHHHH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV---AWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~---~~~V~~TD~~~~~L~~~~ 159 (330)
..|.+||=+|||. |+..+.+|+. +.+|+++|.+++=++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 4688999999884 7776665553 468999999987666665
No 310
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=69.29 E-value=33 Score=30.31 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=32.8
Q ss_pred CCCCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHH
Q 020158 116 SSDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 116 ~~~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~ 160 (330)
...++|++|+=+|.| -+|..+|+. |.+|+++|.+++.++.+..
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 367899999999998 455555543 8899999999876665554
No 311
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=68.85 E-value=29 Score=33.03 Aligned_cols=46 Identities=9% Similarity=-0.049 Sum_probs=39.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHH
Q 020158 119 FNGIISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
-+|..++|.=+|.|--+.+++.. ..+|++.|.++.+++.++.++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 45779999999999888877765 36899999999999999888754
No 312
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.13 E-value=16 Score=31.17 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=43.2
Q ss_pred CeEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 122 IISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
.+.+|||+|-|-+=+++|++| ..-++.+++|-++...+...-+.+. .....++.-|
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~----~k~trf~Rkd 130 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC----AKSTRFRRKD 130 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc----ccchhhhhhh
Confidence 478999999999999999997 6789999999988888877666553 3444444443
No 313
>PRK06172 short chain dehydrogenase; Provisional
Probab=67.74 E-value=34 Score=30.52 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=41.4
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|++.|+-.-+ +++.|.+|++++.+++-++.+...+... ..++.+...|..+.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 68 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA------GGEALFVACDVTRD 68 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCH
Confidence 6789999999866544433 2334789999999977666555555432 24577777887664
No 314
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=67.70 E-value=10 Score=40.54 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=60.9
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
++|-=||+|+ | -.+..+|..|..|++.|.+++.++.....+..+-......+.+.-.. .... .
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~--~~~~-------------~ 400 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLE--RDSI-------------L 400 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH--HHHH-------------H
Confidence 5788899997 3 34445666799999999999998887766654421000001110000 0000 0
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccC
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~ 243 (330)
.....+ .+.......|+||=| |.-+.+.-..+++.|..++++
T Consensus 401 ~~i~~~-~~~~~~~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~ 442 (737)
T TIGR02441 401 SNLTPT-LDYSGFKNADMVIEA-VFEDLSLKHKVIKEVEAVVPP 442 (737)
T ss_pred hCeEEe-CCHHHhccCCeehhh-ccccHHHHHHHHHHHHhhCCC
Confidence 000000 012234578888866 667777888899999988854
No 315
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=67.64 E-value=30 Score=30.81 Aligned_cols=60 Identities=17% Similarity=0.080 Sum_probs=38.9
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNW 182 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW 182 (330)
..+++++||=.|+ +|.+|..+++. |.+|+++|.++.-++.+...+.... ..++.+...|-
T Consensus 8 ~~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~d~ 71 (247)
T PRK08945 8 DLLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-----GPQPAIIPLDL 71 (247)
T ss_pred cccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-----CCCceEEEecc
Confidence 4578999999996 55555554443 7899999999876666555554332 23445555554
No 316
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=67.30 E-value=34 Score=32.23 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=30.8
Q ss_pred CeEEEEcCcc--CHHHHHHHHhCCeEEEEeCchHHHHHHHH
Q 020158 122 IISLELGAGT--GLAGILLSRVAWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 122 ~~VLELG~Gt--GL~gl~lA~~~~~V~~TD~~~~~L~~~~~ 160 (330)
++|+=+|||. |+.|..+++.|..|++.+.+.+-++.+++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~ 43 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ 43 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh
Confidence 4789999995 57888888888999999998666665554
No 317
>PRK05867 short chain dehydrogenase; Provisional
Probab=67.19 E-value=34 Score=30.60 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=40.9
Q ss_pred CCCCeEEEEcCccCHHHH---HHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl---~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++|+++|=.|++.|+-.- .+++.|.+|++++.+++-++.+...+... ..++.+...|..+.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 70 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVVPVCCDVSQH 70 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCH
Confidence 578999999987664332 23344889999999987676666555432 24566667776553
No 318
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=66.98 E-value=1.1e+02 Score=28.46 Aligned_cols=61 Identities=21% Similarity=0.209 Sum_probs=36.5
Q ss_pred CCcCeEeechHH-HHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh-C--CeEEEEeCch
Q 020158 92 PSVGLQVWKAEL-VLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV-A--WTVFLTDHGN 152 (330)
Q Consensus 92 ~~~G~~vW~aa~-~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~-~--~~V~~TD~~~ 152 (330)
+.+-++||+.=. -||.-|+--..+-..-.|.+||=|||+.|.+=-.++.. | .-|++++.++
T Consensus 127 ~kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 127 GKVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred CcEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 467789998722 34443432221123457899999999999443233332 3 3578877775
No 319
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=66.78 E-value=22 Score=33.08 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHHh-CCeEEEEeCchHHHHHHHH
Q 020158 118 DFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~ 160 (330)
.-.+.+||-+|+| +|...+.+|+. |.+|++++.+++..+.++.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 4457788888876 35555555654 7889999999887777643
No 320
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=66.76 E-value=4.3 Score=31.54 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=10.9
Q ss_pred EEEcCccCHHHHHHHHh---C--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEec
Q 020158 125 LELGAGTGLAGILLSRV---A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLN 181 (330)
Q Consensus 125 LELG~GtGL~gl~lA~~---~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ld 181 (330)
||+|+..|..++.+++. . .++++.|..+. .+..+++++.... ..++++...+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~----~~~~~~~~g~ 57 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL----SDRVEFIQGD 57 (106)
T ss_dssp --------------------------EEEESS-------------GGG-----BTEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC----CCeEEEEEcC
Confidence 79999999888877764 2 37999999975 3333333332221 3456665554
No 321
>PRK08862 short chain dehydrogenase; Provisional
Probab=65.55 E-value=35 Score=30.43 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCccCH---HHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 119 FNGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 119 ~~g~~VLELG~GtGL---~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
++|+++|=.|++.|+ ++..+++.|.+|++++.+++-++.+.+.+...+ ..+....+|-.+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~------~~~~~~~~D~~~ 65 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT------DNVYSFQLKDFS 65 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CCeEEEEccCCC
Confidence 578999999999886 333444558999999999877766655554432 234444555443
No 322
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=65.30 E-value=16 Score=34.06 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=35.6
Q ss_pred eEEEEcCccCHHHHHHHHhC-CeEEEEeCchHHHHHHHHHHH
Q 020158 123 ISLELGAGTGLAGILLSRVA-WTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
+++||=||+|-.++.+...| ..|.+.|+++.+.+..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 79999999999999988888 578899999999988888884
No 323
>PRK07814 short chain dehydrogenase; Provisional
Probab=64.72 E-value=42 Score=30.30 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=40.4
Q ss_pred CCCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++||=.|++ |.+|..+++ .|.+|++++.+++-++.+...+... ...+.+...|..+.
T Consensus 7 ~~~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 71 (263)
T PRK07814 7 RLDDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA------GRRAHVVAADLAHP 71 (263)
T ss_pred cCCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 3678999999975 445554443 3789999999876666555554321 24566777776654
No 324
>PRK08339 short chain dehydrogenase; Provisional
Probab=64.54 E-value=44 Score=30.29 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=42.1
Q ss_pred CCCCCeEEEEcCccCHHH---HHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAG---ILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~g---l~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++|+++|=.|++.|+-. ..+++.|.+|+++|.+++-++.+...+.... ..++.+...|-.+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTKR 70 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCH
Confidence 367899999998876533 2334448899999999776666655554321 24566777776654
No 325
>PRK09242 tropinone reductase; Provisional
Probab=64.51 E-value=45 Score=29.80 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCCCCeEEEEcCccCHHHHHH---HHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILL---SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~l---A~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++++++|=.|++.|+-.-++ +..|.+|++++.+++-++.+..++..... ..++.+...|..+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~ 72 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP----EREVHGLAADVSDD 72 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CCeEEEEECCCCCH
Confidence 467899999998665443333 33478999999988777666666654321 24677777777654
No 326
>PRK06125 short chain dehydrogenase; Provisional
Probab=64.34 E-value=45 Score=29.90 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=41.1
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|++.|+-.-+ ++..|.+|++++.+++-++.+...+.... ..++.+...|..+.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~ 69 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSP 69 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCH
Confidence 5789999999866643322 33447899999998876666655554322 24566777777653
No 327
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=64.15 E-value=31 Score=30.59 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchHHHHHHH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~~L~~~~ 159 (330)
.++.+||-.|+|. |...+.+++. |.+|++++.+++..+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 5788999999986 4444444443 789999999877666654
No 328
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=62.81 E-value=38 Score=30.35 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=62.4
Q ss_pred cCeEeechHHHHHHH--HhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh------CCeEEEEeCchHHHHHHHHHHHHc
Q 020158 94 VGLQVWKAELVLADF--VMHKMCTSSDFNGIISLELGAGTGLAGILLSRV------AWTVFLTDHGNYILDNCAKNVQLN 165 (330)
Q Consensus 94 ~G~~vW~aa~~La~~--l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~------~~~V~~TD~~~~~L~~~~~Nv~~N 165 (330)
-|..++..-..++.| |+.. ++.+.|+|+|.=.|-..+..|.. ..+|++.|++..-.+..+ ++.
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~------~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~- 80 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWE------LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IES- 80 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHH------H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG-
T ss_pred CCeehhcCHHHHHHHHHHHHH------hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhh-
Confidence 356666666666654 3322 57789999999999877777654 269999999632111100 110
Q ss_pred cCCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCC
Q 020158 166 SGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGS 245 (330)
Q Consensus 166 ~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~ 245 (330)
+.. ..++++.+.|-.+... .... ...... .--+++.-|.=+..++.-+-++....++++|
T Consensus 81 -hp~--~~rI~~i~Gds~d~~~-----------~~~v----~~~~~~-~~~vlVilDs~H~~~hvl~eL~~y~plv~~G- 140 (206)
T PF04989_consen 81 -HPM--SPRITFIQGDSIDPEI-----------VDQV----RELASP-PHPVLVILDSSHTHEHVLAELEAYAPLVSPG- 140 (206)
T ss_dssp -------TTEEEEES-SSSTHH-----------HHTS----GSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-
T ss_pred -ccc--cCceEEEECCCCCHHH-----------HHHH----HHhhcc-CCceEEEECCCccHHHHHHHHHHhCccCCCC-
Confidence 111 3688888887655310 0000 000011 2234666777777788888888899999775
Q ss_pred CeEEEE
Q 020158 246 KKVLYL 251 (330)
Q Consensus 246 ~~~i~v 251 (330)
..++|
T Consensus 141 -~Y~IV 145 (206)
T PF04989_consen 141 -SYLIV 145 (206)
T ss_dssp --EEEE
T ss_pred -CEEEE
Confidence 34444
No 329
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=62.69 E-value=15 Score=35.35 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHHH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCAK 160 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~~ 160 (330)
.-.|.+||=.|||. |+..+.+|+. |. +|+++|.+++-++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 45688999999874 6666666665 65 79999999887776653
No 330
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=62.64 E-value=19 Score=36.73 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=31.9
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHH
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
++|-=+|+|+ | -.+..+++.|..|++.|.+++.++.+..++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~ 50 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEA 50 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5678889986 3 34445566689999999999988877665543
No 331
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.54 E-value=56 Score=28.77 Aligned_cols=60 Identities=18% Similarity=0.067 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|+ +|.+|..+++. |.+|++++.++.-++.+...+... ..++.+...|-.+.
T Consensus 5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 68 (239)
T PRK07666 5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY------GVKVVIATADVSDY 68 (239)
T ss_pred CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCeEEEEECCCCCH
Confidence 56788999996 56666655443 789999999876555444444322 24566777776543
No 332
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=62.03 E-value=38 Score=31.70 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCC-eEEEEeCch
Q 020158 118 DFNGIISLELGAGTGLAGIL---LSRVAW-TVFLTDHGN 152 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---lA~~~~-~V~~TD~~~ 152 (330)
.+++++||=+||| |...-+ ++..|. +|++.+.++
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4678999999998 643322 233454 599999985
No 333
>PRK06181 short chain dehydrogenase; Provisional
Probab=61.90 E-value=1.2e+02 Score=27.09 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=35.6
Q ss_pred CeEEEEcCccCHHHHHHH----HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 122 IISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA----~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++||=.|+.. .+|..++ ..|.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 2 ~~vlVtGasg-~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~ 62 (263)
T PRK06181 2 KVVIITGASE-GIGRALAVRLARAGAQLVLAARNETRLASLAQELADH------GGEALVVPTDVSDA 62 (263)
T ss_pred CEEEEecCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 5678777544 4454444 33789999999876555554444332 24567777776654
No 334
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=61.88 E-value=27 Score=32.77 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CCe-EEEEeCchHHHHHHH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSRV-AWT-VFLTDHGNYILDNCA 159 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~~-~~~-V~~TD~~~~~L~~~~ 159 (330)
...|.+||=+|+|. |+..+.+|+. |.+ |+++|.+++-++.++
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK 205 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 44688999998763 5555555554 666 999999877666554
No 335
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=61.82 E-value=43 Score=29.61 Aligned_cols=58 Identities=22% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 121 GIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++||=.|++ |.+|..+++. |.+|++++.++.-.+.+...+..+ ..++.+...|+.+.
T Consensus 1 ~~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 62 (255)
T TIGR01963 1 GKTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA------GGSVIYLVADVTKE 62 (255)
T ss_pred CCEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCH
Confidence 3578888855 4445555443 789999999876665555444332 24677788888764
No 336
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=61.82 E-value=13 Score=36.71 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=25.0
Q ss_pred eEEEEcCcc-CH-HHHHHHHhCCeEEEEeCchHHHHHHH
Q 020158 123 ISLELGAGT-GL-AGILLSRVAWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 123 ~VLELG~Gt-GL-~gl~lA~~~~~V~~TD~~~~~L~~~~ 159 (330)
+|--+|+|- || .|..+|..|.+|+|.|+++.-++.+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln 40 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLN 40 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHh
Confidence 455566663 53 34556666999999999987666553
No 337
>PLN02740 Alcohol dehydrogenase-like
Probab=61.66 E-value=14 Score=35.63 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~ 159 (330)
....|.+||=+|||. |+..+.+|+. |. +|+++|.+++-++.++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~ 240 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK 240 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH
Confidence 345688999999873 6666666665 65 6999999987777665
No 338
>PRK05876 short chain dehydrogenase; Provisional
Probab=61.34 E-value=50 Score=30.26 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=40.5
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+.+++||=.|++.|+-.-+ +++.|.+|+++|.++.-++.+...+... ..++.+...|..+.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~------~~~~~~~~~Dv~d~ 67 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE------GFDVHGVMCDVRHR 67 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEeCCCCCH
Confidence 36789999999876653322 3334789999999876665554444322 24566777777664
No 339
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.74 E-value=53 Score=28.79 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|++.| +|..+++ .|.+|++++.+++-++.+...+.. ..++.+...|+.+.
T Consensus 3 ~~~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~ 65 (238)
T PRK05786 3 LKGKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDVSST 65 (238)
T ss_pred cCCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCCCCH
Confidence 46789999999754 3444433 378999999987666555443332 13467778888764
No 340
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=60.64 E-value=69 Score=31.29 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=39.2
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHH--HHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDN--CAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~--~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
...++++||=.| |+|.+|..+++. |.+|++++.++.-+.. ........ ...+.+...|+.+.
T Consensus 56 ~~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~------~~~v~~v~~Dl~d~ 123 (390)
T PLN02657 56 KEPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE------LPGAEVVFGDVTDA 123 (390)
T ss_pred cCCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh------cCCceEEEeeCCCH
Confidence 456788999999 588888777654 7899999987532211 01111110 23567778887764
No 341
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=60.55 E-value=58 Score=28.82 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=41.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|+. |.+|..+++. |.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 2 ~~~~~vlItG~s-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 65 (258)
T PRK12429 2 LKGKVALVTGAA-SGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA------GGKAIGVAMDVTDE 65 (258)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCH
Confidence 467889988864 5556666554 789999999987666655555432 25677777777654
No 342
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=60.53 E-value=21 Score=33.10 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=41.1
Q ss_pred CCCeEEEEcCccCHHHHHHHHhC-------CeEEEEeCchHHHHHHHHHHHHccC---CCCCCCeeEEEEecCCCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRVA-------WTVFLTDHGNYILDNCAKNVQLNSG---VFSHQGSVHVRDLNWMNPWP 187 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~-------~~V~~TD~~~~~L~~~~~Nv~~N~~---~~~~~~~v~v~~ldW~~~~~ 187 (330)
++..++|+|||.|.+|-.++..- ..+++.|... ..+-..|-..+.. .+. .-++.+..++|.....
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~--~R~K~D~~~~~~~~~~~~~-R~riDI~dl~l~~~~~ 92 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS--NRHKADNKIRKDESEPKFE-RLRIDIKDLDLSKLPE 92 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc--ccccchhhhhccCCCCceE-EEEEEeeccchhhccc
Confidence 56789999999999998888762 4789999853 1111222222221 111 3456777888876543
No 343
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=60.26 E-value=29 Score=32.84 Aligned_cols=44 Identities=16% Similarity=-0.076 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchHHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~~L~~~~~ 160 (330)
..-.|.+||=.|+|. |+..+.+|+. |.+|++++.+++-++.+++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 345688999999763 5555555554 6789999998876666554
No 344
>PRK07454 short chain dehydrogenase; Provisional
Probab=59.95 E-value=57 Score=28.77 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++|=.|+ +|-+|..+++. |.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 67 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST------GVKAAAYSIDLSNP 67 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEccCCCH
Confidence 4578898985 55566555543 789999999876555554444321 24567777877664
No 345
>PRK07774 short chain dehydrogenase; Provisional
Probab=59.92 E-value=62 Score=28.60 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=38.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|+ +|.+|..+++ .|.+|++++.++.-++.+...+... ...+.....|..+.
T Consensus 4 ~~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 67 (250)
T PRK07774 4 FDDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD------GGTAIAVQVDVSDP 67 (250)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCH
Confidence 56789999985 4455655554 3789999999876555554444321 23455566666553
No 346
>PRK07102 short chain dehydrogenase; Provisional
Probab=59.82 E-value=56 Score=28.89 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=36.9
Q ss_pred CeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 122 IISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++||=.|+. |-+|..+++ .|.+|+++|.+++-++.+..++..+. ..++.+...|-.+.
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDILDT 63 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCCh
Confidence 578888855 444544443 37899999998765555444444332 35677777776654
No 347
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=59.62 E-value=58 Score=29.35 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=42.6
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++++++|=.|++.|+-.-+ ++..|.+|++++.+++-++.+..++... ..++.+..+|..+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 71 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL------GIEAHGYVCDVTDE 71 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCH
Confidence 46789999999987654332 3344889999999877666666555432 24567777887654
No 348
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=59.35 E-value=77 Score=28.02 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=26.4
Q ss_pred CCCCCeEEEEcCcc-C-HHHHHHHHhCC-eEEEEeCc
Q 020158 118 DFNGIISLELGAGT-G-LAGILLSRVAW-TVFLTDHG 151 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-G-L~gl~lA~~~~-~V~~TD~~ 151 (330)
.++.++|+=+|||. | -++..+++.|. ++++.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46778999999994 4 45566777775 79999998
No 349
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=59.31 E-value=19 Score=34.72 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHH-hCCeEEEEeCchHHHHHHHH
Q 020158 117 SDFNGIISLELGAG-TGLAGILLSR-VAWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~lA~-~~~~V~~TD~~~~~L~~~~~ 160 (330)
..-+|++|+=.|+| .|..++-+|+ .+++|++.|.+++-++.+++
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 34578999999998 3466677777 58999999999987777663
No 350
>PRK07063 short chain dehydrogenase; Provisional
Probab=58.76 E-value=67 Score=28.74 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=42.0
Q ss_pred CCCCCeEEEEcCccCHHH---HHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAG---ILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~g---l~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++||=.|++.|+-. ..++..|.+|+++|.+++-++.+...+..... ..++.+...|..+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~ 70 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA----GARVLAVPADVTDA 70 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC----CceEEEEEccCCCH
Confidence 367899999998765432 22333488999999987766666555543111 34677777777654
No 351
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.33 E-value=23 Score=33.90 Aligned_cols=42 Identities=17% Similarity=-0.038 Sum_probs=30.6
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHH
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
++|-=+|+|+ | -.+..++..|.+|++.|.+++.++.++..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~ 51 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVA 51 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence 5688888885 3 3344455669999999999988877665554
No 352
>PRK07326 short chain dehydrogenase; Provisional
Probab=58.24 E-value=56 Score=28.62 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+.+++||=.|+ +|-+|..+++ .|.+|++++.++.-+..+...+.. ...+.+...|..+.
T Consensus 4 ~~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~D~~~~ 66 (237)
T PRK07326 4 LKGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------KGNVLGLAADVRDE 66 (237)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------cCcEEEEEccCCCH
Confidence 45789999996 5555555544 378999999987655555444432 13466666776553
No 353
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=57.95 E-value=20 Score=36.58 Aligned_cols=42 Identities=24% Similarity=0.190 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchHHHHHHHH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~~L~~~~~ 160 (330)
..+.+|+=+|||. |+..+.+++. |..|++.|.++..++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4578999999995 7877766665 8889999999887665553
No 354
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=57.69 E-value=64 Score=28.72 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=39.9
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+.++++|=.|++.|+-.-+ +++.|.+|+++|.++.-++.+...+... ...+.....|..+.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~ 70 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE------GIKAHAAPFNVTHK 70 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEecCCCCH
Confidence 5789999999776543322 2333789999999876665555444332 23566677777664
No 355
>PRK07062 short chain dehydrogenase; Provisional
Probab=56.67 E-value=80 Score=28.32 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=41.7
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++|+++|=.|++.|+-.-+ ++..|.+|++++.+++-++.+...+..... ..++.+...|..+.
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~ 71 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP----GARLLAARCDVLDE 71 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEecCCCH
Confidence 46789999999876644322 333488999999997666655544433211 23566777776664
No 356
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=56.66 E-value=29 Score=36.92 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=59.9
Q ss_pred CeEEEEcCcc-C-HHHHHHH-HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 122 IISLELGAGT-G-LAGILLS-RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA-~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
++|.=||+|+ | -.+..+| ..|..|++.|.+++.++....++..+-......+.+.-...+ ..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~ 374 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERD---------------KQ 374 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH---------------HH
Confidence 5788999997 3 3333444 669999999999998888776665432100000000000000 00
Q ss_pred ccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccC
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~ 243 (330)
...+.-+ .+.+.....|+||=| +.-+.+.-..+++.|.+.+++
T Consensus 375 ~~~i~~~-~~~~~~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~ 417 (708)
T PRK11154 375 MALISGT-TDYRGFKHADVVIEA-VFEDLALKQQMVAEVEQNCAP 417 (708)
T ss_pred HhcEEEe-CChHHhccCCEEeec-ccccHHHHHHHHHHHHhhCCC
Confidence 0000000 011234578888877 667777888899999998865
No 357
>PRK07035 short chain dehydrogenase; Provisional
Probab=56.54 E-value=75 Score=28.20 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=40.5
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++||=.|++.|+-.-+ +++.|.+|++++.++.-++.+...+... ..++.....|..+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 69 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA------GGKAEALACHIGEM 69 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCH
Confidence 36788999999887654433 3334889999999876665555554322 23456666776654
No 358
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=56.39 E-value=59 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCchHHHHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv 162 (330)
..+++++||=+|+|- | .+...++..| .+|++.+.+++-.+.+...+
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~ 167 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLF 167 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 357889999999972 2 1112223346 79999999976655555444
No 359
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=56.15 E-value=80 Score=28.15 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=40.2
Q ss_pred CCCCCeEEEEcCccCHHHHHH---HHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILL---SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~l---A~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+.+++||=.|++.|+-.-++ +..|.+|++++.+...++.+...+..- ..++.+...|..+.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 72 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSE 72 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 457899999997766544333 333789999998876666554444321 23566667776654
No 360
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=56.12 E-value=50 Score=31.74 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccC
Q 020158 120 NGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSG 167 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~ 167 (330)
...+||==|||+|-++.-+|..|.++-+-..+--| ++-.+..+|.-
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~M--li~S~FiLN~~ 195 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFM--LICSSFILNYC 195 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHH--HHHHHHHHHhh
Confidence 35689999999999999999999887777665433 34456666543
No 361
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=55.46 E-value=77 Score=27.92 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=39.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|++. .+|..+++ .|.+|++++.+.+....+...+... ..++.+...|..+.
T Consensus 1 ~~~~~ilItGas~-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~ 64 (250)
T TIGR03206 1 LKDKTAIVTGGGG-GIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK------GGNAQAFACDITDR 64 (250)
T ss_pred CCCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCH
Confidence 3578899999754 44444443 3789999999876666555555432 24567777776653
No 362
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=55.38 E-value=43 Score=32.14 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=30.9
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHHH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCAK 160 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~~ 160 (330)
...|.+||=+|+|. |+..+.+|+. |. +|+++|.+++-++.+++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 45678888899863 5555556655 66 69999999877776653
No 363
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=55.27 E-value=50 Score=30.62 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=36.2
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++++||=.|+ +|.+|-.+++. |.+|++++.++.-............. ..++.+...|..+.
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~ 67 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGA----KERLHLFKANLLEE 67 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCC----CCceEEEeccccCc
Confidence 4678988886 78888777665 78999988765322222211111110 23567777776654
No 364
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=55.23 E-value=22 Score=33.91 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~ 159 (330)
...|.+||=.|||. |+..+.+|+. |. +|+++|.+++-++.++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~ 218 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR 218 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 45688999998863 6666666665 65 5999999987777664
No 365
>PRK07890 short chain dehydrogenase; Provisional
Probab=55.09 E-value=82 Score=27.95 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=39.4
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..+++||=.|++.|+-.-+ ++..|.+|+++|.++.-++.+...+... ..++.....|..+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 66 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL------GRRALAVPTDITDE 66 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEecCCCCH
Confidence 4678999999866543322 3334889999999876665555444332 24566777776653
No 366
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=55.02 E-value=26 Score=33.89 Aligned_cols=42 Identities=24% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh--CCeEEEEeCchHHHHHHH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSRV--AWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~~--~~~V~~TD~~~~~L~~~~ 159 (330)
.-.|.+|.=.|||. ||..|.-|+. +.+|++.|++++=++.++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~ 227 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK 227 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence 34688999999984 9999998887 469999999988777765
No 367
>PLN00203 glutamyl-tRNA reductase
Probab=54.96 E-value=1.2e+02 Score=31.19 Aligned_cols=68 Identities=21% Similarity=0.169 Sum_probs=39.5
Q ss_pred cCCCCcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCchHHHHHHHH
Q 020158 89 SLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 89 t~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~~~~L~~~~~ 160 (330)
|.+...+.-+=-+|+-|+.-++.. ..+.+++|+=+|+|. | +..-.+...| .+|++++.+++-.+.+..
T Consensus 238 T~I~~~~vSv~s~Av~la~~~~~~----~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 238 TNIASGAVSVSSAAVELALMKLPE----SSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCC----CCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 344444444444566666543321 237789999999973 3 2222223335 479999999766655543
No 368
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=54.82 E-value=9 Score=37.67 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCCeEEEEcCccCHHHHHHHHh-----------------CCeEEEEeCch
Q 020158 120 NGIISLELGAGTGLAGILLSRV-----------------AWTVFLTDHGN 152 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~-----------------~~~V~~TD~~~ 152 (330)
+..+|+|||||+|..++.+... ..+|+..|+..
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~ 112 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPS 112 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCC
Confidence 4568999999999877665322 14788899864
No 369
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.78 E-value=53 Score=32.43 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCch
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGN 152 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~ 152 (330)
+++++|+=+|+|. .|+.+|+. |++|+++|.++
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 5689999999886 55555543 89999999974
No 370
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.39 E-value=23 Score=33.64 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=34.0
Q ss_pred EEEEcCccCHHHHHHHHhCCeE-EEEeCchHHHHHHHHHHH
Q 020158 124 SLELGAGTGLAGILLSRVAWTV-FLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 124 VLELG~GtGL~gl~lA~~~~~V-~~TD~~~~~L~~~~~Nv~ 163 (330)
|+||=||.|-.++.+-..|.+| .+.|+++.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 6899999999998888888765 569999999998888863
No 371
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=53.98 E-value=2e+02 Score=27.21 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=37.3
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
...+++||=.|+ +|.+|..+++. |.+|++++.++.-...+..... . ...+.+...|..+.
T Consensus 7 ~~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~-----~~~~~~~~~Dl~~~ 70 (353)
T PLN02896 7 ESATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK--E-----GDRLRLFRADLQEE 70 (353)
T ss_pred ccCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc--c-----CCeEEEEECCCCCH
Confidence 346789999985 78888777664 7899999877543222221111 1 24566667776553
No 372
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=53.58 E-value=20 Score=31.86 Aligned_cols=33 Identities=18% Similarity=-0.019 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHhC---CeEEEEeCc
Q 020158 119 FNGIISLELGAGTGLAGILLSRVA---WTVFLTDHG 151 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~ 151 (330)
-++.+|||+||-.|.-+.++-++. ..|.+.|+-
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 358899999999999998888773 578999984
No 373
>PRK06139 short chain dehydrogenase; Provisional
Probab=53.57 E-value=71 Score=30.41 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=42.6
Q ss_pred CCCCeEEEEcCccCHHH---HHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAG---ILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~g---l~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|++.|+-. ..++..|.+|++++.+++-++.+...+...+ ..+.+...|..+.
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d~ 68 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTDA 68 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCH
Confidence 57889999998655433 2334458899999999888877776665432 4566677777654
No 374
>PLN02780 ketoreductase/ oxidoreductase
Probab=53.52 E-value=62 Score=30.61 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=40.8
Q ss_pred CCCeEEEEcCccCH---HHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 120 NGIISLELGAGTGL---AGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 120 ~g~~VLELG~GtGL---~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
.|+++|=.||+.|+ ++..+++.|.+|++++.+++-++.+...+..... ...+.....|..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~----~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYS----KTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC----CcEEEEEEEECC
Confidence 58899999987664 2333444588999999998888777766654321 235566666655
No 375
>PRK06194 hypothetical protein; Provisional
Probab=53.43 E-value=80 Score=28.70 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=38.1
Q ss_pred CCCCeEEEEcCccCHHHHHHH----HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA----~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|++.|+ |..++ ..|.+|+++|.+++.++.+...+... ..++.+...|..+.
T Consensus 4 ~~~k~vlVtGasggI-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~ 67 (287)
T PRK06194 4 FAGKVAVITGAASGF-GLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVLGVRTDVSDA 67 (287)
T ss_pred CCCCEEEEeCCccHH-HHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 567899988876543 44433 34889999999876655544443321 24566677776553
No 376
>PRK05866 short chain dehydrogenase; Provisional
Probab=53.17 E-value=81 Score=29.20 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=40.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHH----HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA----~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+.+++||=.|++.|+ |..++ +.|.+|++++.+++-++.+...+... ...+.+...|..+.
T Consensus 37 ~~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~------~~~~~~~~~Dl~d~ 101 (293)
T PRK05866 37 DLTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARREDLLDAVADRITRA------GGDAMAVPCDLSDL 101 (293)
T ss_pred CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 4577899999986554 33333 34789999999987776666555322 23466667776653
No 377
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=52.92 E-value=1.7e+02 Score=29.21 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=43.8
Q ss_pred CCCeEEEEcCccC-HHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCC
Q 020158 120 NGIISLELGAGTG-LAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWM 183 (330)
Q Consensus 120 ~g~~VLELG~GtG-L~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~ 183 (330)
+|-||||+.|-.| =++.++|.+ -..|++-|.+..-+..++.|+.+-+. .+..+..+|-.
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-----~ntiv~n~D~~ 302 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-----TNTIVSNYDGR 302 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-----CceEEEccCcc
Confidence 6889999999987 444444444 35899999999999999999988773 44455555543
No 378
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=52.84 E-value=84 Score=28.07 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=38.0
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++||=.|++.|+-.-+ ++..|.+|++++.+ .-++.+...+... ..++.+...|..+.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 75 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE------GRKVTFVQVDLTKP 75 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc------CCceEEEEcCCCCH
Confidence 46789999999977654433 33448899999887 3333333333221 24566777776654
No 379
>PRK12939 short chain dehydrogenase; Provisional
Probab=52.83 E-value=1e+02 Score=27.14 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=39.7
Q ss_pred CCCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++||=.|++ |-+|..+++ .|.+|++++.+++-+..+...+..- ..++.+...|..+.
T Consensus 4 ~~~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 68 (250)
T PRK12939 4 NLAGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRAHAIAADLADP 68 (250)
T ss_pred CCCCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCH
Confidence 3678999988874 445555443 3789999998876665554444321 24577777777654
No 380
>PRK05854 short chain dehydrogenase; Provisional
Probab=52.43 E-value=99 Score=28.94 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=42.1
Q ss_pred CCCCCCeEEEEcCccCHHHH---HHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl---~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..++|+++|=.|++.|+-.- .+++.|.+|++++.+.+-++.+...+..... ..++.+..+|..+.
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~----~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP----DAKLSLRALDLSSL 77 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEEecCCCH
Confidence 34678999999987664322 2334488999999987655555554433221 24577788887664
No 381
>PRK08223 hypothetical protein; Validated
Probab=52.20 E-value=14 Score=34.89 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcCc-cC-HHHHHHHHhC-CeEEEEeCchHHHHHHHHHH
Q 020158 118 DFNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 118 ~~~g~~VLELG~G-tG-L~gl~lA~~~-~~V~~TD~~~~~L~~~~~Nv 162 (330)
.++..+||=+||| .| -+...+|+.| .++++.|.+.--+.++.+++
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~ 71 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQA 71 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcccccc
Confidence 3678899999999 35 4556667766 68999998754444444443
No 382
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=52.20 E-value=81 Score=29.10 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=60.1
Q ss_pred CeEEEEcCccCHHHHHHHHh-CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcccc
Q 020158 122 IISLELGAGTGLAGILLSRV-AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQE 200 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~ 200 (330)
..|+.||||.=--+.-+... +.+|+=.|. |++++.=++-+..++... ..+......|....
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~--~~~~~~v~~Dl~~~--------------- 144 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEP--PAHRRAVPVDLRQD--------------- 144 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCC--CCceEEeccCchhh---------------
Confidence 46999999965444333222 345555555 577776666665543211 35566666665422
Q ss_pred ccccCccchh---ccCCeeEEEEeccccC--cccHHHHHHHHHHhccCC
Q 020158 201 RYSWNSSELK---EVQRASVLLAADVIYS--DDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 201 ~~~w~~~~~~---~~~~~DlIlaaDviY~--~~~~~~l~~tl~~lL~~~ 244 (330)
|.+.... ......++|+--|+|+ .+....+++.|..+..++
T Consensus 145 ---w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~g 190 (260)
T TIGR00027 145 ---WPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPG 190 (260)
T ss_pred ---HHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCC
Confidence 2111110 1245778888888877 446778999998887654
No 383
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.17 E-value=94 Score=27.18 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEE-eCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLT-DHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~T-D~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+.+++||=.|+ +|-+|..+++ .|.+|+++ +.+++-++.+...+... ..++.+...|..+.
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 67 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE------GGDAIAVKADVSSE 67 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 56788998886 4555555443 37899998 98876665555444432 24677888887765
No 384
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=51.99 E-value=54 Score=31.28 Aligned_cols=43 Identities=19% Similarity=0.050 Sum_probs=32.8
Q ss_pred CCCCCCeEEEEcC-c-cCHHHHHHHHh-CCeEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGA-G-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~-G-tGL~gl~lA~~-~~~V~~TD~~~~~L~~~~ 159 (330)
..-+|.+||=.|+ | +|+..+.+|+. |.+|++|+.+++-++.++
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 3456889999998 3 57777777766 789999999877666655
No 385
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=51.73 E-value=78 Score=27.98 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=21.8
Q ss_pred CCCCCeEEEEcCcc-CHHH-HHHHHhCCeEEEEeC
Q 020158 118 DFNGIISLELGAGT-GLAG-ILLSRVAWTVFLTDH 150 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~g-l~lA~~~~~V~~TD~ 150 (330)
.++|++||=+|+|. |.-- -.+...|++|++.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 36899999999874 3222 233445788888753
No 386
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=51.72 E-value=1.4e+02 Score=25.00 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=24.0
Q ss_pred eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE
Q 020158 144 TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (330)
Q Consensus 144 ~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (330)
+|++-|+.++++++.++.++.++. ..++.+..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~----~~~v~li~ 32 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL----EDRVTLIL 32 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC----CCcEEEEE
Confidence 699999999999999999998764 24455543
No 387
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=51.37 E-value=31 Score=33.06 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~ 159 (330)
.-.|.+||=+|+|. |+..+.+|+. |. .|+++|.+++-++.++
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 34688999998763 5555555554 66 7999999987776654
No 388
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=51.27 E-value=50 Score=29.65 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=24.7
Q ss_pred CCCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCch
Q 020158 118 DFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHGN 152 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~~ 152 (330)
.++..+|+=+|||. | -+...+++.| .++++.|.+.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35678999999993 4 4555566666 5788887653
No 389
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=51.05 E-value=30 Score=32.85 Aligned_cols=41 Identities=32% Similarity=0.467 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeC---chHHHHHHH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV-AWTVFLTDH---GNYILDNCA 159 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~---~~~~L~~~~ 159 (330)
..|.+||=.|+|. |+..+.+|+. |.+|++++. ++.-++.++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 4688999999874 6666666665 678999987 455555443
No 390
>PRK07677 short chain dehydrogenase; Provisional
Probab=50.90 E-value=95 Score=27.60 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=37.2
Q ss_pred CCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 121 GIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
|+++|=.|++.|+-..+ +++.|.+|++++.++..++.+...+... ...+.+...|-.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~ 61 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------PGQVLTVQMDVRN 61 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCC
Confidence 57888888876643322 3334789999999877666655544332 2456677777554
No 391
>PLN02214 cinnamoyl-CoA reductase
Probab=50.43 E-value=2.3e+02 Score=26.85 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=26.6
Q ss_pred CCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchH
Q 020158 118 DFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNY 153 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~ 153 (330)
..++++||=.|+ +|.+|..+++. |.+|++++.+..
T Consensus 7 ~~~~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~ 45 (342)
T PLN02214 7 SPAGKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPD 45 (342)
T ss_pred cCCCCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCch
Confidence 356789998887 68888766553 789999988754
No 392
>PRK05599 hypothetical protein; Provisional
Probab=50.38 E-value=79 Score=28.26 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=37.7
Q ss_pred CeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 122 IISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++||=.|++.|+ |..+|+. |.+|++++.+++-++.+.+.+...+ ...+.+..+|-.+.
T Consensus 1 ~~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 1 MSILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-----ATSVHVLSFDAQDL 61 (246)
T ss_pred CeEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-----CCceEEEEcccCCH
Confidence 357778887775 4444332 7899999998877776666665432 23466677776654
No 393
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=50.37 E-value=99 Score=27.97 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=40.3
Q ss_pred CCCCCeEEEEcCccCHHHH---HHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl---~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++++++|=.|++.|+-.- .+++.|.+|+++|.+++.++.+...+... ..++.+...|..+.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 71 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA------GGEALAVKADVLDK 71 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 4678999999987664332 23334789999999876665555544332 24566677776654
No 394
>PRK07831 short chain dehydrogenase; Provisional
Probab=50.35 E-value=1.2e+02 Score=27.11 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=40.6
Q ss_pred CCCCCCeEEEEcC-ccCHHH---HHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGA-GTGLAG---ILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~-GtGL~g---l~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
...+++++|=.|+ |.|+-. ..++..|.+|+++|.+++-++.....+..+.. ..++.+...|..+.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG----LGRVEAVVCDVTSE 81 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC----CceEEEEEccCCCH
Confidence 3467899999996 445433 23344488999999987666655554543211 23566777776653
No 395
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=50.03 E-value=1.1e+02 Score=26.65 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+.+++||=.|+ +|.+|..+++. |.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 3 ~~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 66 (246)
T PRK05653 3 LQGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA------GGEARVLVFDVSDE 66 (246)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc------CCceEEEEccCCCH
Confidence 45678998887 56666665543 789999999876555444333321 24566666776654
No 396
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=49.80 E-value=89 Score=27.85 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=35.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+.+++||=.|+..|+ |..+++ .|.+|+++|.+..-++.+...+ ..++.....|..+.
T Consensus 4 l~~~~vlItGas~~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~ 64 (257)
T PRK07067 4 LQGKVALLTGAASGI-GEAVAERYLAEGARVVIADIKPARARLAALEI---------GPAAIAVSLDVTRQ 64 (257)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---------CCceEEEEccCCCH
Confidence 567899999965553 444443 3789999999876555443322 12356666676553
No 397
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=49.75 E-value=62 Score=30.70 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=53.3
Q ss_pred CeEEEEcCcc--CHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGT--GLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~Gt--GL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
++|+=+|||. |+.|..+++.|..|++.-.++. ++.++++ +. .+....=....+..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~----GL--------~i~~~~~~~~~~~~---------- 57 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK----GL--------RIEDEGGNFTTPVV---------- 57 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC----Ce--------EEecCCCccccccc----------
Confidence 3688899995 5889999998977888777655 6655543 21 11111000000000
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccC
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~ 243 (330)
. .........+|+||-+== ...++..+..+..++++
T Consensus 58 -~----~~~~~~~~~~Dlviv~vK---a~q~~~al~~l~~~~~~ 93 (307)
T COG1893 58 -A----ATDAEALGPADLVIVTVK---AYQLEEALPSLAPLLGP 93 (307)
T ss_pred -c----ccChhhcCCCCEEEEEec---cccHHHHHHHhhhcCCC
Confidence 0 000112358999885533 34788899999999954
No 398
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.67 E-value=1e+02 Score=27.06 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|+..|+-.-+ ++..|.+|++++.++.-++.+..++.. ...+.+...|..+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~ 65 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-------GGRAIAVAADVSDE 65 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CCeEEEEECCCCCH
Confidence 5678999998865443322 333478999999998666555555433 13466777776654
No 399
>PRK07478 short chain dehydrogenase; Provisional
Probab=49.51 E-value=1.1e+02 Score=27.20 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=39.9
Q ss_pred CCCCeEEEEcCccCHHHH---HHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl---~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++++++|=.|++.|+-.- .+++.|.+|++++.++.-++.+...+...+ .++.+...|..+.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~ 67 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG------GEAVALAGDVRDE 67 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCH
Confidence 578899999987654332 233448899999998776666655554322 3466666776553
No 400
>PRK07576 short chain dehydrogenase; Provisional
Probab=49.39 E-value=1.1e+02 Score=27.69 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=37.6
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|++-|+-..+ ++..|.+|+++|.+++-++.+...+... ...+.+..+|..+.
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~ 70 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA------GPEGLGVSADVRDY 70 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEECCCCCH
Confidence 5788999999754433322 3334789999999876555444333321 23456677776653
No 401
>PRK06720 hypothetical protein; Provisional
Probab=49.38 E-value=1.3e+02 Score=25.69 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=38.4
Q ss_pred CCCCeEEEEcCccCHHHH---HHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 119 FNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl---~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
++++.+|=-|++.|+-.- .++..|.+|+++|.+...++.....+..- ...+.+..+|..+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~ 76 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL------GGEALFVSYDMEK 76 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCC
Confidence 578899999988765333 33445889999999876555444444321 2345566777654
No 402
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=49.34 E-value=65 Score=27.77 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=21.0
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCch
Q 020158 117 SDFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGN 152 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~ 152 (330)
-.+.||+++=+|-| -+|--+|+ +|++|+.+|.+|
T Consensus 19 ~~l~Gk~vvV~GYG--~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYG--KVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--S--HHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeeCCCEEEEeCCC--cccHHHHHHHhhCCCEEEEEECCh
Confidence 56899999998766 44444443 489999999998
No 403
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=49.34 E-value=34 Score=31.34 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=27.4
Q ss_pred eEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHH
Q 020158 123 ISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 123 ~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~ 159 (330)
+|||.=||.|-=++++|..|.+|++.+.+|-+-.+++
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~ 114 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLK 114 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHH
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHH
Confidence 8999999999999999999999999999986655555
No 404
>PLN02827 Alcohol dehydrogenase-like
Probab=49.19 E-value=33 Score=33.16 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~ 159 (330)
...+|.+||=.|+|. |+..+.+|+. |. .|+++|.+++-++.++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 345689999998864 6665555654 55 6889998877666553
No 405
>PRK06138 short chain dehydrogenase; Provisional
Probab=48.77 E-value=1e+02 Score=27.12 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCccCHHHHHH---HHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILL---SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l---A~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++++++|=.||..|+-..++ ++.|.+|++++.+++.+.....++.. ..++.+...|..+.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~ 65 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAA-------GGRAFARQGDVGSA 65 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhc-------CCeEEEEEcCCCCH
Confidence 57889999998655433322 33478999999987665555554431 35577788887664
No 406
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=48.66 E-value=44 Score=31.87 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=58.5
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
++|-=+|+|+ | -.+..+|..|..|++.|.++++++..+..+..+-......+.+.-...+ ...
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~---------------~~l 68 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEAD---------------AAL 68 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHH---------------HHH
Confidence 5778899997 3 3344445556999999999998888776665552100000000000000 000
Q ss_pred cccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccC
Q 020158 200 ERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPL 243 (330)
Q Consensus 200 ~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~ 243 (330)
..+.- ..++......|+||=| ++.+.+.-..+++.+..++++
T Consensus 69 ~~i~~-~~~~~~l~~~DlVIEA-v~E~levK~~vf~~l~~~~~~ 110 (307)
T COG1250 69 ARITP-TTDLAALKDADLVIEA-VVEDLELKKQVFAELEALAKP 110 (307)
T ss_pred hhccc-cCchhHhccCCEEEEe-ccccHHHHHHHHHHHHhhcCC
Confidence 00000 0011134567888866 667777778888888888854
No 407
>PRK09186 flagellin modification protein A; Provisional
Probab=48.46 E-value=1.2e+02 Score=26.92 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=39.2
Q ss_pred CCCCeEEEEcCccCHHHHHHH----HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA----~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++++||=.|++.| +|..+| +.|.+|++++.+++-++.+...+..... ...+.+...|..+.
T Consensus 2 ~~~k~vlItGas~g-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~d~ 67 (256)
T PRK09186 2 LKGKTILITGAGGL-IGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK----SKKLSLVELDITDQ 67 (256)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC----CCceeEEEecCCCH
Confidence 46789999998654 343433 3378999999987766665555533211 23455556776654
No 408
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=47.95 E-value=29 Score=32.45 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNC 158 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~ 158 (330)
.++.+||=+|||. |+..+.+|+. |. .|+++|.+++-++.+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 3678899899874 7777766665 65 477888887655444
No 409
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=47.88 E-value=36 Score=32.58 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~ 159 (330)
...+|.+||=.|+|. |+..+.+|+. |. +|+++|.+++-++.++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~ 229 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK 229 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 345688999998753 5555555554 65 7999999987776664
No 410
>PRK08643 acetoin reductase; Validated
Probab=47.86 E-value=1.1e+02 Score=27.10 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=38.0
Q ss_pred CCeEEEEcCccCHHHHHHH----HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 121 GIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA----~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++++|=.|+..|+ |..++ +.|.+|+++|.++..++.+...+... ...+.+...|..+.
T Consensus 2 ~k~~lItGas~gi-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 63 (256)
T PRK08643 2 SKVALVTGAGQGI-GFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD------GGKAIAVKADVSDR 63 (256)
T ss_pred CCEEEEECCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 5678888876653 43333 33789999999877666666555432 24566677777664
No 411
>PRK08265 short chain dehydrogenase; Provisional
Probab=47.55 E-value=1.1e+02 Score=27.60 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=36.9
Q ss_pred CCCCeEEEEcCccCHHHHHH----HHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l----A~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++++++|=.|++.|+ |..+ ++.|.+|+++|.+++-++.+..-+ ..++.+...|..+.
T Consensus 4 ~~~k~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~ 64 (261)
T PRK08265 4 LAGKVAIVTGGATLI-GAAVARALVAAGARVAIVDIDADNGAAVAASL---------GERARFIATDITDD 64 (261)
T ss_pred CCCCEEEEECCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCeeEEEEecCCCH
Confidence 578899999976553 3333 334889999999875444333222 13566777887764
No 412
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=47.51 E-value=43 Score=31.15 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=30.5
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHH
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
++|.=+|||+ | -.+..++..|.+|++.|.+++.++.++..+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4677788885 4 3445556668899999999998887665444
No 413
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=47.46 E-value=1.8e+02 Score=27.95 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCch
Q 020158 118 DFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHGN 152 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~~ 152 (330)
.++..+||=+|||. | -+...+++.| .++++.|.+.
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45778999999993 4 4445566666 4899999863
No 414
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.43 E-value=36 Score=34.44 Aligned_cols=41 Identities=24% Similarity=0.167 Sum_probs=28.6
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHH-HhCCeEEEEeCchHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLS-RVAWTVFLTDHGNYILDN 157 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA-~~~~~V~~TD~~~~~L~~ 157 (330)
..+.|++|+=+|.|. |+..+.++ ..|.+|+++|..+..++.
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~ 50 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP 50 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 345789999999884 65555333 348999999987654443
No 415
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=46.97 E-value=99 Score=27.73 Aligned_cols=126 Identities=14% Similarity=0.138 Sum_probs=74.8
Q ss_pred CcCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHh----C--CeEEEEeCchHHHHHHHHHHHHcc
Q 020158 93 SVGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRV----A--WTVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 93 ~~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~----~--~~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
--|..+|..-..++.|=.-- ...+...|+|.|+--|-..+..|.. | .+|+..|++-.-++-....
T Consensus 46 wmG~p~~k~p~D~~~yQell----w~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----- 116 (237)
T COG3510 46 WMGIPCIKSPSDMWNYQELL----WELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----- 116 (237)
T ss_pred EecccccCCHHHHHHHHHHH----HhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----
Confidence 44777888877777652110 2346678999999998777776654 5 6899999973222111110
Q ss_pred CCCCCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCC
Q 020158 167 GVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSK 246 (330)
Q Consensus 167 ~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~ 246 (330)
...+.+.+.+=.++.- ..+.. .......-+.++-|.-+..+.+-+-++.+..++..|.-
T Consensus 117 -----~p~i~f~egss~dpai--------~eqi~--------~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y 175 (237)
T COG3510 117 -----VPDILFIEGSSTDPAI--------AEQIR--------RLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDY 175 (237)
T ss_pred -----CCCeEEEeCCCCCHHH--------HHHHH--------HHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCce
Confidence 2445555544222200 00000 01123346777778888888888889999999977643
Q ss_pred eE
Q 020158 247 KV 248 (330)
Q Consensus 247 ~~ 248 (330)
.+
T Consensus 176 ~v 177 (237)
T COG3510 176 LV 177 (237)
T ss_pred EE
Confidence 33
No 416
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=46.95 E-value=42 Score=28.97 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=49.4
Q ss_pred CeEEEEcCccCHHHHHHHHh--CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCccc
Q 020158 122 IISLELGAGTGLAGILLSRV--AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSASQ 199 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~--~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~ 199 (330)
+.|+.||||.=--+.-+... +.+++=.|. |++++.=++-+..+.... ..+.++...|..+.
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~--~~~~~~v~~Dl~~~-------------- 142 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARP--PANYRYVPADLRDD-------------- 142 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHH--HEESSEEES-TTSH--------------
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccC--CcceeEEeccccch--------------
Confidence 48999999987666666654 346666676 577766555555542110 12334566665542
Q ss_pred cccccCccchh---ccCCeeEEEEeccccCc--ccHHHHHHHH
Q 020158 200 ERYSWNSSELK---EVQRASVLLAADVIYSD--DLTDALFHTL 237 (330)
Q Consensus 200 ~~~~w~~~~~~---~~~~~DlIlaaDviY~~--~~~~~l~~tl 237 (330)
+|.+...+ ......++++--|+++- +....+++.|
T Consensus 143 ---~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 143 ---SWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp ---HHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred ---hhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 11111111 13456778887777663 3445555443
No 417
>PRK09291 short chain dehydrogenase; Provisional
Probab=46.83 E-value=1.1e+02 Score=27.14 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=37.0
Q ss_pred CCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 121 GIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++||=.|++.|+ |..+++ .|.+|++++.++.-++.++...... ...+.+...|+.+.
T Consensus 2 ~~~vlVtGasg~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 63 (257)
T PRK09291 2 SKTILITGAGSGF-GREVALRLARKGHNVIAGVQIAPQVTALRAEAARR------GLALRVEKLDLTDA 63 (257)
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcceEEEeeCCCH
Confidence 4678888886554 444433 3789999998876555444433322 23577788888764
No 418
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=46.69 E-value=36 Score=32.17 Aligned_cols=43 Identities=26% Similarity=0.221 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CCe-EEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AWT-VFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~~-V~~TD~~~~~L~~~~ 159 (330)
....|.+||=+|||. |+..+.+|+. |.+ |+++|.+++-++.++
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 345688999999864 6565556655 665 789999887766653
No 419
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=46.48 E-value=71 Score=30.74 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=70.4
Q ss_pred hHHHHHHHHhhhcCC-------CCCCCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCC
Q 020158 101 AELVLADFVMHKMCT-------SSDFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVF 169 (330)
Q Consensus 101 aa~~La~~l~~~~~~-------~~~~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~ 169 (330)
++..=|.||.+.... -.-+...+|.=||-|. +|.-+|+ .|+.|+..|+|.+-|..+..-.
T Consensus 141 a~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGGGv--vgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f------- 211 (371)
T COG0686 141 AAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGGGV--VGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF------- 211 (371)
T ss_pred HHHHHHHHHHhccCCceeEecCCCCCCCccEEEECCcc--ccchHHHHHhccCCeeEEEecCHHHHhhhhHhh-------
Confidence 455556666554311 1123345677787664 4444444 3799999999977665554332
Q ss_pred CCCCeeEEEEecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCCCCeEE
Q 020158 170 SHQGSVHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLGSKKVL 249 (330)
Q Consensus 170 ~~~~~v~v~~ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~~~~~i 249 (330)
..++.++.-.-.+. .+...+.|+||++=.|=-........+.+.+.|++| ..++
T Consensus 212 --~~rv~~~~st~~~i-----------------------ee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpG-sViv 265 (371)
T COG0686 212 --GGRVHTLYSTPSNI-----------------------EEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPG-SVIV 265 (371)
T ss_pred --CceeEEEEcCHHHH-----------------------HHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCC-cEEE
Confidence 24444433221111 123468999999977777777777778878888765 2333
Q ss_pred EEEeeee
Q 020158 250 YLALEKR 256 (330)
Q Consensus 250 ~va~~~R 256 (330)
=+|.-.-
T Consensus 266 DVAiDqG 272 (371)
T COG0686 266 DVAIDQG 272 (371)
T ss_pred EEEEcCC
Confidence 3554433
No 420
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.37 E-value=1.3e+02 Score=26.40 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=36.6
Q ss_pred CCCCeEEEEcCccCHHHHHHH----HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 119 FNGIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA----~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
++++++|=.|++.|+ |..++ +.|.+|+++|.++.-++.+...+... ..++.....|-.+
T Consensus 3 ~~~~~~lItG~~g~i-G~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~ 65 (253)
T PRK08217 3 LKDKVIVITGGAQGL-GRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVRGYAANVTD 65 (253)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCC
Confidence 568899999975544 33333 33789999999876555554444332 2345556666443
No 421
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.19 E-value=47 Score=31.02 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=31.4
Q ss_pred eEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHH
Q 020158 123 ISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 123 ~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
+|-=||+|+ | -.+..++..|..|++.|.+++.++.++..+..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH
Confidence 677889986 3 34445566699999999999988877666544
No 422
>PRK06914 short chain dehydrogenase; Provisional
Probab=46.06 E-value=1.3e+02 Score=27.19 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=38.7
Q ss_pred CCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 120 NGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++||=.|++.|+-.-+ ++..|.+|++++.+++-++.+...+..... ..++.+...|..+.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~ 66 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL----QQNIKVQQLDVTDQ 66 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCceeEEecCCCCH
Confidence 457889899755543332 233488999999887666555444332211 24677777887764
No 423
>PRK08251 short chain dehydrogenase; Provisional
Probab=45.92 E-value=1.3e+02 Score=26.41 Aligned_cols=60 Identities=17% Similarity=0.038 Sum_probs=39.7
Q ss_pred CCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 121 GIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++||=.|+. |-+|..+++ .|.+|++++.++.-++.+...+..... ..++.+..+|..+.
T Consensus 2 ~k~vlItGas-~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~ 65 (248)
T PRK08251 2 RQKILITGAS-SGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP----GIKVAVAALDVNDH 65 (248)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEcCCCCH
Confidence 5688888865 444444443 378999999998777666655543211 35678888887764
No 424
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.67 E-value=1.1e+02 Score=27.48 Aligned_cols=40 Identities=10% Similarity=-0.011 Sum_probs=27.5
Q ss_pred CCCCCCeEEEEcCccC-HHHHH----HHHhCCeEEEEeCchHHHH
Q 020158 117 SDFNGIISLELGAGTG-LAGIL----LSRVAWTVFLTDHGNYILD 156 (330)
Q Consensus 117 ~~~~g~~VLELG~GtG-L~gl~----lA~~~~~V~~TD~~~~~L~ 156 (330)
..++|+++|=.|++.| -+|.. +++.|.+|+++|.+....+
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~ 50 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARP 50 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHH
Confidence 3468999999998642 33433 4445889999999865433
No 425
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=45.40 E-value=26 Score=35.29 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=53.4
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSL 192 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~ 192 (330)
+.++...++++|+|+|--+-++-.+ -..++++|.+..|+.+...|..-..+ .+.+.++.+-+.+.--+
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~----~g~~~v~~~~~~r~~~p---- 268 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH----IGEPIVRKLVFHRQRLP---- 268 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh----cCchhccccchhcccCC----
Confidence 5677778899999977444333322 35799999999999888777643111 12233333222221000
Q ss_pred CCCCccccccccCccchhccCCeeEEEEeccccCccc
Q 020158 193 GNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDL 229 (330)
Q Consensus 193 ~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~ 229 (330)
+.....||+||++-.+.....
T Consensus 269 ----------------i~~~~~yDlvi~ah~l~~~~s 289 (491)
T KOG2539|consen 269 ----------------IDIKNGYDLVICAHKLHELGS 289 (491)
T ss_pred ----------------CCcccceeeEEeeeeeeccCC
Confidence 112245999999999987543
No 426
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=45.14 E-value=1.1e+02 Score=27.87 Aligned_cols=40 Identities=18% Similarity=0.084 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCccCHHH-H-HHHHhCCe--EEEEeCchHHHHHH
Q 020158 119 FNGIISLELGAGTGLAG-I-LLSRVAWT--VFLTDHGNYILDNC 158 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~g-l-~lA~~~~~--V~~TD~~~~~L~~~ 158 (330)
.++++||=+|.|.-... + .+...|++ |++-++++++.+.+
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~ 66 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK 66 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH
Confidence 46889999999963333 2 22334664 55557777776543
No 427
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=45.12 E-value=1.4e+02 Score=26.47 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=35.9
Q ss_pred CCeEEEEcCccCHHHHHHH----HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 121 GIISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 121 g~~VLELG~GtGL~gl~lA----~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++||=.|++. .+|..++ ..|.+|+++|.+..-++.+...+..-.. ..++.+...|..+.
T Consensus 2 ~k~ilItG~~~-~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~ 65 (259)
T PRK12384 2 NQVAVVIGGGQ-TLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYG----EGMAYGFGADATSE 65 (259)
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC----CceeEEEEccCCCH
Confidence 56889999654 4444433 3478999999987655544443322110 13566777776653
No 428
>PRK07904 short chain dehydrogenase; Provisional
Probab=44.95 E-value=1.1e+02 Score=27.61 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=39.3
Q ss_pred CCCeEEEEcCccCHHHHHH---HHhC-CeEEEEeCchHH-HHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 120 NGIISLELGAGTGLAGILL---SRVA-WTVFLTDHGNYI-LDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~l---A~~~-~~V~~TD~~~~~-L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++||=.||+.|+-.-++ ++.| .+|++++.+++- ++.+...+..++ ..++.+..+|-.+.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~v~~~~~D~~~~ 72 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-----ASSVEVIDFDALDT 72 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-----CCceEEEEecCCCh
Confidence 5688999999765433332 2334 799999998653 665555554432 23677788887654
No 429
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=44.84 E-value=78 Score=29.51 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHH
Q 020158 120 NGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (330)
Q Consensus 120 ~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~ 159 (330)
++.+||-.|||. |...+.+|+. |. +|++|+.+++..+.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 789999988763 4444444544 66 7999999887776544
No 430
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=44.38 E-value=1.5e+02 Score=26.15 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=37.4
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeC-chHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDH-GNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~-~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++++++|=.|+ +|.+|..+++. |.+|+++.. +++.++.+...+... ..++.+..+|..+.
T Consensus 4 ~~~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~ 68 (247)
T PRK12935 4 LNGKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE------GHDVYAVQADVSKV 68 (247)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 56889999995 56666665553 788887643 344444433333221 24677788887764
No 431
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=44.30 E-value=44 Score=31.93 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~ 159 (330)
...+|.+||=.|+|. |+..+.+|+. |. +|+++|.+++-++.++
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 345688999888763 5555555555 65 7999999877666664
No 432
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=44.16 E-value=45 Score=34.02 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=31.8
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHH
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
++|-=||+|+ | -.+..++..|..|++.|.+++.++....++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~ 52 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAA 52 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4677788885 4 34445666689999999999988887666543
No 433
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=44.15 E-value=65 Score=31.04 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=26.5
Q ss_pred CCCCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCch
Q 020158 117 SDFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHGN 152 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~~ 152 (330)
..+++++||=+|||. | .++..+++.| .++++.|.+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 346788999999994 4 4555566666 4899999864
No 434
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=44.11 E-value=80 Score=31.02 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=42.2
Q ss_pred CeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCc-cCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHH
Q 020158 95 GLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAG-TGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 95 G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~G-tGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
=.+.|+-..+.-+-| ..-++.+||-|.+| +-.+++ ++...++|+++|+||.-+.+++-.+.
T Consensus 17 Y~~~WEDp~vD~~aL-------~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 17 YAQCWEDPRVDMEAL-------NIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred eccccCCcHHHHHHh-------CCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 347888888777765 34467789988554 446665 33345899999999977777664443
No 435
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=43.77 E-value=43 Score=32.76 Aligned_cols=43 Identities=26% Similarity=0.195 Sum_probs=32.5
Q ss_pred CCCCeEEEEc-Cc-cCHHHHHHHHh-C---CeEEEEeCchHHHHHHHHH
Q 020158 119 FNGIISLELG-AG-TGLAGILLSRV-A---WTVFLTDHGNYILDNCAKN 161 (330)
Q Consensus 119 ~~g~~VLELG-~G-tGL~gl~lA~~-~---~~V~~TD~~~~~L~~~~~N 161 (330)
-.|.+||=+| +| .|+..+.+|+. | .+|+++|.+++-++.+++.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4577898887 45 58888777776 3 3799999998888877664
No 436
>PRK07791 short chain dehydrogenase; Provisional
Probab=43.77 E-value=1.3e+02 Score=27.67 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCch---------HHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGN---------YILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~---------~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++++++|=.|++.|+-.-+ +++.|.+|+++|.+. +-++.+...+... ..++.+...|..+.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~ 76 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA------GGEAVANGDDIADW 76 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc------CCceEEEeCCCCCH
Confidence 36789999999988754433 344488999998764 4444443333322 24556666776553
No 437
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.67 E-value=88 Score=28.18 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=35.4
Q ss_pred CCCCCeEEEEcCc-cCHHHHHHHH----hCCeEEEEeCch--HHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAG-TGLAGILLSR----VAWTVFLTDHGN--YILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~G-tGL~gl~lA~----~~~~V~~TD~~~--~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++++++|=.|+| ++-+|..+|+ .|.+|++++.+. +.++.+...+ ...+.+..+|..+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---------~~~~~~~~~Dv~~~ 69 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---------PEPAPVLELDVTNE 69 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---------CCCCcEEeCCCCCH
Confidence 3678999999994 3444444444 488999998763 4444333222 12344566666553
No 438
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=43.60 E-value=1.7e+02 Score=27.35 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=50.4
Q ss_pred CCCCCeEEEEcCccCHH---HHHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLA---GILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~---gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..+++++|==||-.|+- +-.+|+.|.+|+++-.+.+-|..+++.++.+. ...+.+...|..+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-----~v~v~vi~~DLs~~ 68 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-----GVEVEVIPADLSDP 68 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-----CceEEEEECcCCCh
Confidence 45678999999877743 33455568999999999999999999998765 46788999998876
No 439
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=43.30 E-value=1.1e+02 Score=28.06 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=44.7
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHcc
Q 020158 117 SDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQLNS 166 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~ 166 (330)
..+.|..|||-=+|+|.+++++...+..+++.++++..++.+.+.+..+.
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 34778999999999999999999999999999999999998888887654
No 440
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=43.17 E-value=43 Score=28.49 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHH-hCCeEEEEeCchHHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSR-VAWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~-~~~~V~~TD~~~~~L~~~~~ 160 (330)
..++..+|+=+|+|. |.-++.++. +|.+|+..|..+..++....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLES 61 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhc
Confidence 445678999999884 665555554 48999999998776665543
No 441
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.07 E-value=55 Score=30.37 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=29.7
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHH
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
++|-=+|+|+ | -.+..++..|.+|++.|.+++.++.++.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 3677788875 2 3334445558899999999988888776653
No 442
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=42.86 E-value=32 Score=34.92 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=57.3
Q ss_pred CeEEEEcCccCHHHHHHHHhC---CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCCCCCCccCCCCCcc
Q 020158 122 IISLELGAGTGLAGILLSRVA---WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNPWPPIFSLGNSSAS 198 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~---~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~~~~~~~~~~~~~~ 198 (330)
++|+|+.||.|-.+.++.... ..|+-++ .+..|..+-.. -.--...||-+..+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIydR------------GLIG~yhDWCE~fsT---------- 423 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIYDR------------GLIGVYHDWCEAFST---------- 423 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhhhc------------ccchhccchhhccCC----------
Confidence 589999999997665555443 3455442 23334333211 111234688775321
Q ss_pred ccccccCccchhccCCeeEEEEeccccC---cccHHHHHHHHHHhccCCCCeEEEE
Q 020158 199 QERYSWNSSELKEVQRASVLLAADVIYS---DDLTDALFHTLKRLMPLGSKKVLYL 251 (330)
Q Consensus 199 ~~~~~w~~~~~~~~~~~DlIlaaDviY~---~~~~~~l~~tl~~lL~~~~~~~i~v 251 (330)
-...||+|=|+.++=. .-..+.++-.+.++|+|+ +.+++
T Consensus 424 ------------YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~--G~~ii 465 (506)
T PF03141_consen 424 ------------YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPG--GWVII 465 (506)
T ss_pred ------------CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCC--ceEEE
Confidence 2468999988877632 346788888999999886 45555
No 443
>PRK05875 short chain dehydrogenase; Provisional
Probab=42.85 E-value=1.5e+02 Score=26.60 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|++.| +|..+++ .|.+|++++.++.-++.....+..-.. ..++.+...|..+.
T Consensus 5 ~~~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~ 70 (276)
T PRK05875 5 FQDRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKG----AGAVRYEPADVTDE 70 (276)
T ss_pred CCCCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccC----CCceEEEEcCCCCH
Confidence 56899999997655 3444433 378999999987655544444322110 24567777777654
No 444
>PRK09072 short chain dehydrogenase; Provisional
Probab=42.79 E-value=1.5e+02 Score=26.45 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=39.0
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.++++||=.|++.|+-.-+ ++..|.+|++++.+++-++.+..-+. . ..++.+...|..+.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-----~~~~~~~~~D~~d~ 65 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP--Y-----PGRHRWVVADLTSE 65 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh--c-----CCceEEEEccCCCH
Confidence 4678899999876543322 33448899999999766655544331 1 24567777776654
No 445
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=42.72 E-value=2.9e+02 Score=25.88 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----C--CeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----A--WTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~--~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++|++||=.|+ +|.+|..+++. + .+|++.|.++.-...+.... + ..++.+...|..+.
T Consensus 2 ~~~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~--~------~~~~~~v~~Dl~d~ 65 (324)
T TIGR03589 2 FNNKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF--P------APCLRFFIGDVRDK 65 (324)
T ss_pred cCCCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh--C------CCcEEEEEccCCCH
Confidence 46889998887 57777666653 3 58999987643332222111 1 13466667776553
No 446
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=42.58 E-value=1.2e+02 Score=28.10 Aligned_cols=61 Identities=10% Similarity=0.176 Sum_probs=34.9
Q ss_pred CCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 120 NGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 120 ~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++||=.| |+|.+|-.+++. |.+|++++.++............... ..++.+...|-.+.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~ 68 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGA----KERLKLFKADLLDE 68 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCC----CCceEEEeCCCCCc
Confidence 368999998 467777766654 78998887765433322211111110 23566666665543
No 447
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=42.45 E-value=94 Score=27.95 Aligned_cols=43 Identities=19% Similarity=0.089 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CCe-EEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AWT-VFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~~-V~~TD~~~~~L~~~~ 159 (330)
...+|.+||=.|+|. |...+.+|+. |.+ |++|+.+++-++.++
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE 139 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH
Confidence 445788999888753 4444445544 666 999999887666444
No 448
>PRK06940 short chain dehydrogenase; Provisional
Probab=42.38 E-value=1.4e+02 Score=27.28 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=34.8
Q ss_pred CeEEEEcCccCHHHHHHHHh---CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 122 IISLELGAGTGLAGILLSRV---AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~---~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+.+|=-|+| | +|..+|+. |.+|+++|.+++-++.+...+... ..++.+..+|..+.
T Consensus 3 k~~lItGa~-g-IG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~ 61 (275)
T PRK06940 3 EVVVVIGAG-G-IGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------GFDVSTQEVDVSSR 61 (275)
T ss_pred CEEEEECCC-h-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEeecCCH
Confidence 456666764 4 55555544 789999999876555444443321 24566777777654
No 449
>PRK08303 short chain dehydrogenase; Provisional
Probab=42.28 E-value=1.3e+02 Score=28.23 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=24.7
Q ss_pred CCCCCeEEEEcCccCHHH---HHHHHhCCeEEEEeCc
Q 020158 118 DFNGIISLELGAGTGLAG---ILLSRVAWTVFLTDHG 151 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~g---l~lA~~~~~V~~TD~~ 151 (330)
.++|+++|=.|++.|+-. ..+++.|.+|++++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 468899999998776332 2233448899999986
No 450
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=42.25 E-value=40 Score=32.94 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEcCc-cC-HHHHHHHHhCCeEEEEeCch-HHHHHH
Q 020158 117 SDFNGIISLELGAG-TG-LAGILLSRVAWTVFLTDHGN-YILDNC 158 (330)
Q Consensus 117 ~~~~g~~VLELG~G-tG-L~gl~lA~~~~~V~~TD~~~-~~L~~~ 158 (330)
-.+.||+|+=.|-| +| -++..+...|++|+.|+++| ..|+.+
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~ 249 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA 249 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh
Confidence 45789999988766 34 23333334489999999998 455544
No 451
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.21 E-value=1.5e+02 Score=25.76 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=37.9
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeC-chHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDH-GNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~-~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++.++||=.|+ +|.+|..+++. |.+|++... +...++.+...+... ..++.+...|..+.
T Consensus 4 ~~~~~vlItGa-sg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~ 68 (249)
T PRK12825 4 LMGRVALVTGA-ARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL------GRRAQAVQADVTDK 68 (249)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc------CCceEEEECCcCCH
Confidence 45678998886 67777777654 678766444 445555555554432 24577777877654
No 452
>PRK08589 short chain dehydrogenase; Validated
Probab=42.12 E-value=1.7e+02 Score=26.47 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=37.9
Q ss_pred CCCCeEEEEcCccCHHH---HHHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAG---ILLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~g---l~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++++++|=.|++.|+-. ..++..|.+|++++.+ +-++.+...+... ..++.+..+|-.+.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 66 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN------GGKAKAYHVDISDE 66 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc------CCeEEEEEeecCCH
Confidence 67899999998766432 2233448999999998 4444444444322 24566777776554
No 453
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=41.54 E-value=2.3e+02 Score=24.32 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHH-HHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEE
Q 020158 101 AELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILL-SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRD 179 (330)
Q Consensus 101 aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~l-A~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ 179 (330)
.+-.|++.+.... ..+.+|+=|||=+-...+.- ...+.++++-|++.. ...- .+. .+.-
T Consensus 11 T~~~l~~~l~~~~-----~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R--------F~~~------~~~-~F~f 70 (162)
T PF10237_consen 11 TAEFLARELLDGA-----LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR--------FEQF------GGD-EFVF 70 (162)
T ss_pred HHHHHHHHHHHhc-----CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch--------HHhc------CCc-ceEE
Confidence 3556777766532 34578999988776665555 122578999999832 2221 123 4556
Q ss_pred ecCCCCCCCCccCCCCCccccccccCccchhccCCeeEEEEeccccCcccHHHHHHHHHHhccCC
Q 020158 180 LNWMNPWPPIFSLGNSSASQERYSWNSSELKEVQRASVLLAADVIYSDDLTDALFHTLKRLMPLG 244 (330)
Q Consensus 180 ldW~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~DlIlaaDviY~~~~~~~l~~tl~~lL~~~ 244 (330)
.|...+.... .....++|+||+=-.+...+.......|++.|++++
T Consensus 71 yD~~~p~~~~-------------------~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~ 116 (162)
T PF10237_consen 71 YDYNEPEELP-------------------EELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPG 116 (162)
T ss_pred CCCCChhhhh-------------------hhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCcc
Confidence 6666542211 011358999998888877888888889999999773
No 454
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=41.52 E-value=98 Score=28.57 Aligned_cols=44 Identities=11% Similarity=0.006 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEcC--ccCHHHHHHHHh-CCeEEEEeCchHHHHHHHH
Q 020158 117 SDFNGIISLELGA--GTGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 117 ~~~~g~~VLELG~--GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~ 160 (330)
..-+|.+||=.|+ |.|...+.+|+. |.+|++|+.+++-.+.++.
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3456889998885 346666666665 7899999988877766654
No 455
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=41.48 E-value=54 Score=31.95 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchHHHHHHHH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~~L~~~~~ 160 (330)
+++++|+=+|+|. |...+..++. |.+|++.|.+++-++.+..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 4667899998883 5555544443 7799999998766555443
No 456
>PRK12829 short chain dehydrogenase; Provisional
Probab=41.31 E-value=1.4e+02 Score=26.39 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=38.9
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..+++++||=.|++.|+ |..+++ .|.+|++++.++..++.+..... ..++.+...|+.+.
T Consensus 7 ~~~~~~~vlItGa~g~i-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~D~~~~ 70 (264)
T PRK12829 7 KPLDGLRVLVTGGASGI-GRAIAEAFAEAGARVHVCDVSEAALAATAARLP--------GAKVTATVADVADP 70 (264)
T ss_pred hccCCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--------cCceEEEEccCCCH
Confidence 34788999999987554 444333 37899999998765554433321 12456677777654
No 457
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=41.30 E-value=1e+02 Score=28.64 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcC-c-cCHHHHHHHHh-CCeEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGA-G-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~-G-tGL~gl~lA~~-~~~V~~TD~~~~~L~~~~ 159 (330)
..-+|.+||=.|+ | .|...+.+|+. |.+|++|+.+++-.+.++
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 3456889999985 3 57777767765 789999998877666664
No 458
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=40.87 E-value=1.6e+02 Score=30.99 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=22.8
Q ss_pred CeEEEEcCccCHHHHHHHHhC--------------CeEEEEeCch
Q 020158 122 IISLELGAGTGLAGILLSRVA--------------WTVFLTDHGN 152 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~~~--------------~~V~~TD~~~ 152 (330)
-+|+|+|=|+|+-.+++.+.- -+++..+..|
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 689999999998777665321 2678888754
No 459
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=40.84 E-value=1.4e+02 Score=27.83 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCCCCeEEEEcCccCHHHH--HHHHhC-CeEEEEeCchHHHHHHH
Q 020158 118 DFNGIISLELGAGTGLAGI--LLSRVA-WTVFLTDHGNYILDNCA 159 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl--~lA~~~-~~V~~TD~~~~~L~~~~ 159 (330)
.+++++||=||||----++ .++..| .+|++.+.+++-.+.+.
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4678999999999543333 333445 58999999865444443
No 460
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=40.67 E-value=1.7e+02 Score=25.80 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=38.2
Q ss_pred CCCCeEEEEcCccCHHHHHH----HHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILL----SRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~l----A~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|+..| +|..+ +..|.+|++++.++.-++.+...+... ..++.+...|..+.
T Consensus 5 ~~~~~vlItGasg~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 68 (262)
T PRK13394 5 LNGKTAVVTGAASG-IGKEIALELARAGAAVAIADLNQDGANAVADEINKA------GGKAIGVAMDVTNE 68 (262)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc------CceEEEEECCCCCH
Confidence 56889998887544 33333 334789999999986665555444322 24566667776654
No 461
>PRK05872 short chain dehydrogenase; Provisional
Probab=40.60 E-value=1.4e+02 Score=27.47 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=38.9
Q ss_pred CCCCCCeEEEEcCccCHHHH---HHHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl---~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..++|++||=.|++.|+-.. .++..|.+|++++.+++-++.+...+.. ...+.....|..+.
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-------~~~~~~~~~Dv~d~ 69 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-------DDRVLTVVADVTDL 69 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-------CCcEEEEEecCCCH
Confidence 34789999999977654332 2334488999999987766555443321 23444555776654
No 462
>PRK07109 short chain dehydrogenase; Provisional
Probab=40.58 E-value=1.7e+02 Score=27.69 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++||=.|++.|+-.-+ +++.|.+|++++.+++-++.+...+... ..++.+...|..+.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~------g~~~~~v~~Dv~d~ 69 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA------GGEALAVVADVADA 69 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------CCcEEEEEecCCCH
Confidence 46788999999765543322 3445889999999987777666666432 24566677776654
No 463
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.36 E-value=64 Score=29.95 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=30.6
Q ss_pred CeEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHHHc
Q 020158 122 IISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQLN 165 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~N 165 (330)
++|.=+|+|. | -.+..++..|.+|++.|.+++.++.+..++..|
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~ 50 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGN 50 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 5677788885 3 344455556889999999998887765544433
No 464
>PRK06482 short chain dehydrogenase; Provisional
Probab=40.04 E-value=1.4e+02 Score=27.02 Aligned_cols=54 Identities=17% Similarity=0.026 Sum_probs=35.2
Q ss_pred CeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 122 IISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++||=.|+ +|.+|..+++ .|.+|++++.+++.++.++... ..++.+...|..+.
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~ 60 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---------GDRLWVLQLDVTDS 60 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------cCceEEEEccCCCH
Confidence 57887787 4555555444 3789999999876665544332 23567777887764
No 465
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=40.00 E-value=1.1e+02 Score=28.20 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcCc-cCHHHHHHHHh-CCeEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAG-TGLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~G-tGL~gl~lA~~-~~~V~~TD~~~~~L~~~~ 159 (330)
..-++.+||=+||| .|...+.+|+. |.+|++++.+++.++.++
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 34567889889886 45554444544 789999999887776663
No 466
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=39.81 E-value=60 Score=31.60 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCc
Q 020158 119 FNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHG 151 (330)
Q Consensus 119 ~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~ 151 (330)
+++++||=+|||. | .+...+++.| .++++.|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5788999999983 4 3455566666 589999986
No 467
>PRK07825 short chain dehydrogenase; Provisional
Probab=39.55 E-value=1.5e+02 Score=26.75 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=37.3
Q ss_pred CCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
+++++||=.|++.|+-..+ ++..|.+|++++.+++-++.+...+ ..+.+...|+.+.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~ 62 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL----------GLVVGGPLDVTDP 62 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------ccceEEEccCCCH
Confidence 4678999999876644333 3334889999999876665544332 1345667777664
No 468
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.45 E-value=2e+02 Score=26.74 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=39.0
Q ss_pred CCCCCCeEEEEcCccCHHHH---HHHHhCCeEEEEeCch-HHHHHHHHHHHHccCCCCCCCeeEEEEecCCC
Q 020158 117 SDFNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGN-YILDNCAKNVQLNSGVFSHQGSVHVRDLNWMN 184 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl---~lA~~~~~V~~TD~~~-~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~ 184 (330)
..++|+++|=.|++.|+-.- .+++.|.+|+++|.+. ..++.+...+... ..++.+...|..+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~------g~~~~~~~~Dv~d 73 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA------GAKAVAVAGDISQ 73 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc------CCeEEEEeCCCCC
Confidence 45789999999998775433 3344488999999853 3343333333321 2456667777655
No 469
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=39.33 E-value=1.1e+02 Score=28.69 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=31.9
Q ss_pred CCCCCCeEEEEcC--ccCHHHHHHHHh-CCeEEEEeCchHHHHHHHH
Q 020158 117 SDFNGIISLELGA--GTGLAGILLSRV-AWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 117 ~~~~g~~VLELG~--GtGL~gl~lA~~-~~~V~~TD~~~~~L~~~~~ 160 (330)
..-.|.+||=.|+ |.|...+.+|+. |.+|++|+.+++-.+.++.
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3456889999987 346666656655 7899999988776666654
No 470
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=39.32 E-value=1.2e+02 Score=28.42 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=28.2
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHH-HhCCeEEEEeCchHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLS-RVAWTVFLTDHGNYILDN 157 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA-~~~~~V~~TD~~~~~L~~ 157 (330)
..+.+++|+=||+|. |...+..+ ..|.+|++.|.++...+.
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~ 190 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLAR 190 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 456899999999984 43333332 237899999999764443
No 471
>PRK05650 short chain dehydrogenase; Provisional
Probab=39.24 E-value=1.7e+02 Score=26.31 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=35.9
Q ss_pred CeEEEEcCccCHHHHHHH----HhCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 122 IISLELGAGTGLAGILLS----RVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 122 ~~VLELG~GtGL~gl~lA----~~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++||=.|+..|+ |..++ +.|.+|++++.+++-++.+...+...+ .++.+...|+.+.
T Consensus 1 ~~vlVtGasggI-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~ 61 (270)
T PRK05650 1 NRVMITGAASGL-GRAIALRWAREGWRLALADVNEEGGEETLKLLREAG------GDGFYQRCDVRDY 61 (270)
T ss_pred CEEEEecCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCH
Confidence 367777765443 33333 347899999998766655555544332 4567777887654
No 472
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=39.21 E-value=60 Score=34.56 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=30.8
Q ss_pred CeEEEEcCcc-C-HHHHHHH-HhCCeEEEEeCchHHHHHHHHHHH
Q 020158 122 IISLELGAGT-G-LAGILLS-RVAWTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 122 ~~VLELG~Gt-G-L~gl~lA-~~~~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
++|-=||+|+ | -.+..+| ..|..|++.|.+++.++.+..++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~ 349 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAW 349 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4788999997 3 2222344 468999999999998887766654
No 473
>PRK06198 short chain dehydrogenase; Provisional
Probab=38.96 E-value=1.9e+02 Score=25.69 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=37.1
Q ss_pred CCCCCeEEEEcCccCHHHHHHHH----hCCe-EEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 118 DFNGIISLELGAGTGLAGILLSR----VAWT-VFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~lA~----~~~~-V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
.+++++||=.|++.| +|..+++ .|.+ |++++.+++-+......+.. . ...+.+...|..+.
T Consensus 3 ~~~~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~-~-----~~~~~~~~~D~~~~ 68 (260)
T PRK06198 3 RLDGKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEA-L-----GAKAVFVQADLSDV 68 (260)
T ss_pred CCCCcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHh-c-----CCeEEEEEccCCCH
Confidence 367899999997655 4444433 3667 99999986544433333321 1 24566667776653
No 474
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=38.82 E-value=57 Score=31.57 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=25.5
Q ss_pred CCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchH
Q 020158 120 NGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNY 153 (330)
Q Consensus 120 ~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~ 153 (330)
.|.+||=.|+|. |+..+.+|+. |.+|+++|.+++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~ 213 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSE 213 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChH
Confidence 578898888874 6666666665 788999988754
No 475
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=38.81 E-value=70 Score=24.05 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=19.4
Q ss_pred CCC-CeEEEEcCccC--HHHHHHHHh--CCeEEEEeC
Q 020158 119 FNG-IISLELGAGTG--LAGILLSRV--AWTVFLTDH 150 (330)
Q Consensus 119 ~~g-~~VLELG~GtG--L~gl~lA~~--~~~V~~TD~ 150 (330)
++| |+||=+||-+| |.+-.++.. ++..+.+-+
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 355 89999999875 777555554 466666654
No 476
>PRK12828 short chain dehydrogenase; Provisional
Probab=38.57 E-value=1.5e+02 Score=25.59 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHH
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYI 154 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~ 154 (330)
+++++||=.|++ |.+|..+++ .|.+|++++.++.-
T Consensus 5 ~~~k~vlItGat-g~iG~~la~~l~~~G~~v~~~~r~~~~ 43 (239)
T PRK12828 5 LQGKVVAITGGF-GGLGRATAAWLAARGARVALIGRGAAP 43 (239)
T ss_pred CCCCEEEEECCC-CcHhHHHHHHHHHCCCeEEEEeCChHh
Confidence 568899999976 444555444 37899999997643
No 477
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=38.46 E-value=50 Score=31.66 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=26.1
Q ss_pred CCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchH
Q 020158 119 FNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNY 153 (330)
Q Consensus 119 ~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~ 153 (330)
..|.+||=.|+|. |+..+.+|+. |.+|++++.+++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~ 218 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN 218 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 3678888899874 7676666665 788999887754
No 478
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=38.36 E-value=1.7e+02 Score=28.24 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=32.5
Q ss_pred EEEEcCccCHHHHHHHHh----C-C-eEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 124 SLELGAGTGLAGILLSRV----A-W-TVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 124 VLELG~GtGL~gl~lA~~----~-~-~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
|+=||| |.+|-.+++. . . +|++.|.+.+-++.+...+ + ..++....+|..+.
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~------~~~~~~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--L------GDRVEAVQVDVNDP 58 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----T------TTTEEEEE--TTTH
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--c------ccceeEEEEecCCH
Confidence 566888 6777666654 2 2 8999999987666555433 1 47889999998764
No 479
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=38.16 E-value=1.5e+02 Score=28.24 Aligned_cols=39 Identities=28% Similarity=0.201 Sum_probs=27.0
Q ss_pred CCCCCeEEEEcCc--cCHHHHHHHHh-CCeEEEEeCchHHHH
Q 020158 118 DFNGIISLELGAG--TGLAGILLSRV-AWTVFLTDHGNYILD 156 (330)
Q Consensus 118 ~~~g~~VLELG~G--tGL~gl~lA~~-~~~V~~TD~~~~~L~ 156 (330)
.-.|.+||=.|+. .|...+-+|+. |.+++++-.+++-.+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~ 181 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE 181 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH
Confidence 3458999999954 46777777776 557777777654444
No 480
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=38.12 E-value=39 Score=32.50 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=30.5
Q ss_pred EEEcCccCHHHHHHHH---h-CCeEEEEeCchHHHHHHHHHHHHccC
Q 020158 125 LELGAGTGLAGILLSR---V-AWTVFLTDHGNYILDNCAKNVQLNSG 167 (330)
Q Consensus 125 LELG~GtGL~gl~lA~---~-~~~V~~TD~~~~~L~~~~~Nv~~N~~ 167 (330)
+|+|.|+ ..|..+. . +...++||+++.....+..|+..|+.
T Consensus 107 iDIgtga--sci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l 151 (419)
T KOG2912|consen 107 IDIGTGA--SCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL 151 (419)
T ss_pred eeccCch--hhhHHhhhchhccceeeeeeccccccchhhcccccccc
Confidence 6776554 4443332 2 56899999998889999999999986
No 481
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=37.98 E-value=1.6e+02 Score=26.23 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCccCHHHH---HHHHhCCeEEEEeCchHHHHHHH
Q 020158 119 FNGIISLELGAGTGLAGI---LLSRVAWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl---~lA~~~~~V~~TD~~~~~L~~~~ 159 (330)
+++++||=.|++.|+-.- .++..|.+|++++.+++-++.+.
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLR 47 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 578999999987664332 23334889999999876655443
No 482
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=37.72 E-value=1.9e+02 Score=26.54 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=28.1
Q ss_pred CCCCCeEEEEcCccCHHHHH---HHHhCCeEEEEeCchHHHHHHHHHH
Q 020158 118 DFNGIISLELGAGTGLAGIL---LSRVAWTVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~gl~---lA~~~~~V~~TD~~~~~L~~~~~Nv 162 (330)
..++++|+=+|+| |....+ ++..|.+|++++.+++-.+.+...+
T Consensus 114 ~~~~k~vliiGaG-g~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~ 160 (270)
T TIGR00507 114 LRPNQRVLIIGAG-GAARAVALPLLKADCNVIIANRTVSKAEELAERF 160 (270)
T ss_pred CccCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4568899999998 433222 2233779999999865444444333
No 483
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=37.71 E-value=80 Score=30.17 Aligned_cols=64 Identities=17% Similarity=0.072 Sum_probs=40.2
Q ss_pred cCeEeechHHHHHHHHhhhcCCCCCCCCCeEEEEcCccCHHHHHHHHhCCeEEEEeCchHHHHHHHHHHHH
Q 020158 94 VGLQVWKAELVLADFVMHKMCTSSDFNGIISLELGAGTGLAGILLSRVAWTVFLTDHGNYILDNCAKNVQL 164 (330)
Q Consensus 94 ~G~~vW~aa~~La~~l~~~~~~~~~~~g~~VLELG~GtGL~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~~ 164 (330)
+--|+|+...+=.+-| ..-.|.+|.-+|+|---.=-.+++.-++|.++|+++.-+.+-+-.+..
T Consensus 44 vYpqiwEDp~Vdmeam-------~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 44 VYPQIWEDPSVDMEAM-------QLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred ccccccCCccccHHHH-------hcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHH
Confidence 3346676655443333 223578999999985423334555568999999999766665544443
No 484
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=37.67 E-value=1.9e+02 Score=25.44 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=36.6
Q ss_pred CCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
++|++||=.|++.|+ |..+++ .|.+|++++.++ .+.+...+... ...+.+...|..+.
T Consensus 3 ~~~k~vlItGas~gI-G~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~------~~~~~~~~~D~~~~ 64 (248)
T TIGR01832 3 LEGKVALVTGANTGL-GQGIAVGLAEAGADIVGAGRSE--PSETQQQVEAL------GRRFLSLTADLSDI 64 (248)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhc------CCceEEEECCCCCH
Confidence 678999999997664 444443 378999999864 22233333221 24567777777664
No 485
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=37.56 E-value=2.6e+02 Score=26.05 Aligned_cols=45 Identities=20% Similarity=0.074 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcCccCHHH--HHHHHhC-CeEEEEeCchHHHHHHHHHH
Q 020158 118 DFNGIISLELGAGTGLAG--ILLSRVA-WTVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~g--l~lA~~~-~~V~~TD~~~~~L~~~~~Nv 162 (330)
..++++|+=||||----+ ..++..| .+|++.|.+++-.+.+...+
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l 171 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADEL 171 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence 467899999999953222 2333345 58999999976555554444
No 486
>PRK05717 oxidoreductase; Validated
Probab=37.50 E-value=1.8e+02 Score=25.81 Aligned_cols=59 Identities=22% Similarity=0.355 Sum_probs=36.1
Q ss_pred CCCCCCeEEEEcCccCHHHHHHHH----hCCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 117 SDFNGIISLELGAGTGLAGILLSR----VAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 117 ~~~~g~~VLELG~GtGL~gl~lA~----~~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
..++|++||=.|++.|+ |..+|+ .|.+|+++|.++.-...+.... ...+.+...|-.+.
T Consensus 6 ~~~~~k~vlItG~sg~I-G~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dl~~~ 68 (255)
T PRK05717 6 PGHNGRVALVTGAARGI-GLGIAAWLIAEGWQVVLADLDRERGSKVAKAL---------GENAWFIAMDVADE 68 (255)
T ss_pred cccCCCEEEEeCCcchH-HHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc---------CCceEEEEccCCCH
Confidence 45789999999986544 444333 3789999998864333222221 13455666766553
No 487
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.41 E-value=71 Score=29.49 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=27.3
Q ss_pred eEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHH
Q 020158 123 ISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNV 162 (330)
Q Consensus 123 ~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv 162 (330)
+|-=+|+|. | -.+..++..|.+|++.|.+++.++..+..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i 46 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATI 46 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Confidence 566677774 2 344445555789999999998887655444
No 488
>PRK07775 short chain dehydrogenase; Provisional
Probab=37.40 E-value=2.1e+02 Score=25.86 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCccCHHHHHHHHh----CCeEEEEeCchHHHHHHHHHHHHccCCCCCCCeeEEEEecCCCC
Q 020158 119 FNGIISLELGAGTGLAGILLSRV----AWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSVHVRDLNWMNP 185 (330)
Q Consensus 119 ~~g~~VLELG~GtGL~gl~lA~~----~~~V~~TD~~~~~L~~~~~Nv~~N~~~~~~~~~v~v~~ldW~~~ 185 (330)
...++||=.|++ |.+|..+++. |.+|++++.++.-+..+..++... ..++.+...|..+.
T Consensus 8 ~~~~~vlVtGa~-g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~ 71 (274)
T PRK07775 8 PDRRPALVAGAS-SGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD------GGEAVAFPLDVTDP 71 (274)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCH
Confidence 345789989964 5566666554 789999998766554444444321 24566666776653
No 489
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=37.34 E-value=43 Score=32.67 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=32.6
Q ss_pred CeEEEEcCcc---CHHHHHHHHhCCeEEEEeCchHHHHHHHHH
Q 020158 122 IISLELGAGT---GLAGILLSRVAWTVFLTDHGNYILDNCAKN 161 (330)
Q Consensus 122 ~~VLELG~Gt---GL~gl~lA~~~~~V~~TD~~~~~L~~~~~N 161 (330)
++|+=+|+|. |.+|-.+++.|..|++.|..+.+++.++.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~q 43 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKR 43 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcC
Confidence 4688899994 467888888899999999988888777654
No 490
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=37.12 E-value=35 Score=35.86 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=27.4
Q ss_pred CCCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCc
Q 020158 118 DFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHG 151 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~ 151 (330)
.+++.+||=+|||+ | .++..+++.| .++++.|.+
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 34688999999997 6 6777788887 689999975
No 491
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=36.88 E-value=43 Score=32.88 Aligned_cols=35 Identities=14% Similarity=-0.019 Sum_probs=23.1
Q ss_pred EEEEcCccCHHHHHHHH---hCCeEEEEeCchHHHHHHHH
Q 020158 124 SLELGAGTGLAGILLSR---VAWTVFLTDHGNYILDNCAK 160 (330)
Q Consensus 124 VLELG~GtGL~gl~lA~---~~~~V~~TD~~~~~L~~~~~ 160 (330)
|-=+|+| ..|+.+|. .|.+|++.|.+++.++.++.
T Consensus 3 I~VIGlG--yvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 3 ITISGTG--YVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEECCC--HHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 4445555 44433332 37899999999988877764
No 492
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=36.83 E-value=1.4e+02 Score=26.26 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=26.2
Q ss_pred CCCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCch
Q 020158 118 DFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHGN 152 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~~ 152 (330)
.+++.+||=+|||. | .+...+++.| .++++.|.+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 46788999999993 4 4555666666 5899999873
No 493
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=36.69 E-value=2e+02 Score=26.11 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=25.6
Q ss_pred CCCCeEEEEcCc-cC-HHHHHHHHhC-CeEEEEeCch
Q 020158 119 FNGIISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (330)
Q Consensus 119 ~~g~~VLELG~G-tG-L~gl~lA~~~-~~V~~TD~~~ 152 (330)
+++.+||=+||| .| .+...+++.| .++++.|.+.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 567899999998 35 5556667766 5899998764
No 494
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=36.67 E-value=1.3e+02 Score=28.12 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=28.9
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHHh-CCeEEEEeCchHHHHHHH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSRV-AWTVFLTDHGNYILDNCA 159 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~~-~~~V~~TD~~~~~L~~~~ 159 (330)
...+.+||=.|+|. |...+.+|+. |.+|++++.+++-++.++
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR 204 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 34678999998652 4444445554 778999999877666664
No 495
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=36.63 E-value=92 Score=29.18 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcCccCHHH---HHHHHhC-CeEEEEeCchHHHHHHHHHHHHc
Q 020158 118 DFNGIISLELGAGTGLAG---ILLSRVA-WTVFLTDHGNYILDNCAKNVQLN 165 (330)
Q Consensus 118 ~~~g~~VLELG~GtGL~g---l~lA~~~-~~V~~TD~~~~~L~~~~~Nv~~N 165 (330)
.++..+||=+||| |+-+ ..++..| .++++.|.+.--+.++.+|+-.+
T Consensus 23 KL~~SrVLVVG~G-GLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~ 73 (287)
T PTZ00245 23 QLMHTSVALHGVA-GAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQ 73 (287)
T ss_pred HHhhCeEEEECCC-chHHHHHHHHHHcCCCeEEEecCCccchhhhccccccc
Confidence 3567899999997 3322 2233334 58999998765566666665444
No 496
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=36.60 E-value=25 Score=34.07 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=24.9
Q ss_pred CCCCCeEEEEcCcc-C-HHHHHHHHhC-CeEEEEeCch
Q 020158 118 DFNGIISLELGAGT-G-LAGILLSRVA-WTVFLTDHGN 152 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-G-L~gl~lA~~~-~~V~~TD~~~ 152 (330)
.+++.+||=+|||. | -+...+++.| .++++.|.+.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 36778999999993 4 4445566665 5788888764
No 497
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=36.49 E-value=60 Score=26.53 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=19.1
Q ss_pred eEEEEcCc-cC-HHHHHHHHhC-CeEEEEeCch
Q 020158 123 ISLELGAG-TG-LAGILLSRVA-WTVFLTDHGN 152 (330)
Q Consensus 123 ~VLELG~G-tG-L~gl~lA~~~-~~V~~TD~~~ 152 (330)
+|+=+||| .| -+...+++.| .++++.|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 46778887 24 3344455555 4899999763
No 498
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=36.49 E-value=74 Score=29.87 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=28.3
Q ss_pred eEEEEcCcc-C-HHHHHHHHhCCeEEEEeCchHHHHHHHHHHH
Q 020158 123 ISLELGAGT-G-LAGILLSRVAWTVFLTDHGNYILDNCAKNVQ 163 (330)
Q Consensus 123 ~VLELG~Gt-G-L~gl~lA~~~~~V~~TD~~~~~L~~~~~Nv~ 163 (330)
+|.=+|+|. | -.+..+++.|.+|++.|.+++.++.++..+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~ 46 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIA 46 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHH
Confidence 577788774 3 3333445558899999999887777665443
No 499
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=36.26 E-value=69 Score=31.77 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=26.6
Q ss_pred CCCCCeEEEEcCcc-CHHHHHHHH-hCCeEEEEeCchH
Q 020158 118 DFNGIISLELGAGT-GLAGILLSR-VAWTVFLTDHGNY 153 (330)
Q Consensus 118 ~~~g~~VLELG~Gt-GL~gl~lA~-~~~~V~~TD~~~~ 153 (330)
.+.|++|+=+|+|. |..-...++ .|.+|+++|.++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 47899999999995 544333333 3789999999874
No 500
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.12 E-value=76 Score=29.92 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=29.7
Q ss_pred CCCCCCeEEEEcCcc-CHHHHHHHHh-CC-eEEEEeCchHHHHHHH
Q 020158 117 SDFNGIISLELGAGT-GLAGILLSRV-AW-TVFLTDHGNYILDNCA 159 (330)
Q Consensus 117 ~~~~g~~VLELG~Gt-GL~gl~lA~~-~~-~V~~TD~~~~~L~~~~ 159 (330)
..-+|.+||=.|+|. |+..+.+|+. |. .|++||.+++-++.++
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 345688999998763 5555555555 55 6999999876665555
Done!