BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020160
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/293 (48%), Positives = 203/293 (69%), Gaps = 2/293 (0%)
Query: 33 SNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN 92
+F+ + Y + +FL L A S++A+ ++ A AE++ LP++ +V + S GL+
Sbjct: 41 DKRFKLFR-YWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLD 99
Query: 93 HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL 152
+D+++C +GV + N +V ++DVAD A+GL++ VLR++ D +VR+G W +F L
Sbjct: 100 KVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKF-GDFKL 158
Query: 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDV 212
+K GKRVGI+GLG IG VA+R EAF C +SY SR+KKP+ Y +Y V ELA+NSD+
Sbjct: 159 TTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDI 218
Query: 213 LIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVF 272
L++ C LT +T H+IN++V+ ALG KGV+IN+GRG +DE E+V L+ G +GGAGLDVF
Sbjct: 219 LVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVF 278
Query: 273 ENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
E EP+VPE+LF L+NVVL PH T E+ K + +L V NLEA FS KPLLTP
Sbjct: 279 EREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTP 331
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 154/280 (55%), Gaps = 10/280 (3%)
Query: 41 AYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECR 100
A E+ALP S++A+ + GA ++ E LP + ++ G + +D+ R
Sbjct: 64 ALEAALP----------SIRAVATGGGAGLSNEWXEKLPSLGIIAINGVGTDKVDLARAR 113
Query: 101 RRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKR 160
RR + + V ++DVAD + L + VLR++ D VR+G W + PLG GKR
Sbjct: 114 RRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKR 173
Query: 161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALT 220
+G++GLG IG +A R EAFG V Y +R+ V + + +LA +SDVL +C A +
Sbjct: 174 IGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAAS 233
Query: 221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE 280
T ++++ +L ALG +G+++NV RG ++DE ++ L G I GAGLDVF NEP +
Sbjct: 234 AATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRS 293
Query: 281 QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNK 320
+ N VL PH T E+ +L +ANL A F+ +
Sbjct: 294 EFHTTPNTVLXPHQGSATVETRXAXGKLVLANLAAHFAGE 333
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/261 (36%), Positives = 155/261 (59%), Gaps = 9/261 (3%)
Query: 61 AIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADY 120
I S +T E+L ++++ SAG ++ID+ E +RG+ + + SE VA++
Sbjct: 45 GIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEF 104
Query: 121 ALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSK----LGGKRVGIVGLGSIGSEVAKR 176
+GL+I+++RK+ AD F+R+G W +A+ G K L GK+VGI+G+G+IG +A+R
Sbjct: 105 TVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARR 164
Query: 177 LEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLL 233
L FG + Y SR++K +V Y D+ EL SD++I+ LT T+H+IN++ +
Sbjct: 165 LIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVK 224
Query: 234 ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALD-NVVLSP 292
L K ++N+GRGA++DEK + + +G++ G DVFE EP +LF + VL+P
Sbjct: 225 KLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTP 283
Query: 293 HSAVFTPESFKDVCELAVANL 313
H A E+ +DV AV NL
Sbjct: 284 HYAGLALEAQEDVGFRAVENL 304
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 164/315 (52%), Gaps = 16/315 (5%)
Query: 12 PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
P+V + R+ G ML ++F + E +P E L V A+ +
Sbjct: 3 PKVFITREIPEVGIKMLEDEFEVE-----VWGDEKEIP-REILLKKVKEVDALVTMLSER 56
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+ E+ P++R+V + G ++ID+ E +RG+ + N +V ++ AD A LL+
Sbjct: 57 IDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATA 116
Query: 130 RKLSAADCFVRQGLWP-----INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
R + D FVR G W + ++ LG + GK +GI+GLG IG +AKR + F +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 185 SYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
Y SR +K V + + +L SD +++ LT +T+HLIN++ L + K ++
Sbjct: 177 LYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
IN+ RG ++D +V L G I GAGLDVFE EP E+LF LDNVVL+PH + +
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA 296
Query: 302 FKDVCELAVANLEAF 316
+ + EL NL AF
Sbjct: 297 REGMAELVAKNLIAF 311
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 149/282 (52%), Gaps = 9/282 (3%)
Query: 43 ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
E +P E L V A+ + + E+ P++R+V + G ++ID+ E +R
Sbjct: 31 EKEIP-REILLKKVKEVDALVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP-----INAEFPLGSKLG 157
G+ + N +V ++ AD A LL+ R + D FVR G W + ++ LG +
Sbjct: 90 GIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVY 149
Query: 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLI 214
GK +GI+GLG IG +AKR + F + Y SR +K V + + +L SD ++
Sbjct: 150 GKTIGIIGLGRIGQAIAKRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVV 209
Query: 215 ICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN 274
+ LT +T+HLIN++ L K ++IN+ RG ++D +V L G I GAGLDVFE
Sbjct: 210 LAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 269
Query: 275 EPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAF 316
EP E+LF LDNVVL+PH + + + EL NL AF
Sbjct: 270 EPYYNEELFKLDNVVLTPHIGSASFGAREGXAELVAKNLIAF 311
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 141/261 (54%), Gaps = 10/261 (3%)
Query: 47 PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVAL 106
P + L V+AI + VT ++ P+++++ GL++IDV + +G+ +
Sbjct: 33 PDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEV 92
Query: 107 ANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGL 166
NA S VA+ A+GL+ V RK++ AD +R+G+W + +G +L GK +GI+G
Sbjct: 93 VNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWA--KKEAMGIELEGKTIGIIGF 150
Query: 167 GSIGSEVAKRLEAFGCCV----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQ 222
G IG +VAK A G + Y + + V F D+ L SDV+ I L +
Sbjct: 151 GRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DLETLLKESDVVTIHVPLVES 209
Query: 223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ- 281
T+HLIN++ L + K ++IN RG ++D +V L G I GAGLDVFE EP +P+
Sbjct: 210 TYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEP-LPKDH 268
Query: 282 -LFALDNVVLSPHSAVFTPES 301
L DNVVL+PH T E+
Sbjct: 269 PLTKFDNVVLTPHIGASTVEA 289
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 132/266 (49%), Gaps = 5/266 (1%)
Query: 56 AHSVKAIFSSAGAPVTAEILR-LLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFS 114
AH + +F +A +TAE++R L P ++ + S G +HID R G+ + + +V S
Sbjct: 69 AHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLS 128
Query: 115 EDVADYALGLLIDVLRKLSAADCFVRQGLWP-INAEFPLGSKLGGKRVGIVGLGSIGSEV 173
+ A+ A L+++ R+ AD VR G WP LG L G+R+GI G G IG +
Sbjct: 129 DACAEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAI 188
Query: 174 AKRLEAFGCCVSYNSRNKKPSVTYP--FYPDVCE-LAANSDVLIICCALTDQTHHLINKQ 230
A R FG + Y++R + Y D + L SD+ +I + ++
Sbjct: 189 ATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHD 248
Query: 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVL 290
+ + + V+IN+ RG +I++ ++ L + AGLDVF NEP + + +LDN+ L
Sbjct: 249 RIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFL 308
Query: 291 SPHSAVFTPESFKDVCELAVANLEAF 316
+PH T E+ L + +EA
Sbjct: 309 TPHIGSATHETRDAXGWLLIQGIEAL 334
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 144/253 (56%), Gaps = 5/253 (1%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+ AE++ ++++ S G++H+D+ R RG+ + + V +E AD L LL+ V
Sbjct: 55 IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 130 RKLSAADCFVRQGLWP-INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
R++ + R GLW + E LG L G +G+VG+G IG VAKR AFG V Y++
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHA 174
Query: 189 RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248
R KP + YPF + EL +DV+ + LT +TH L+N++ L A+ + +++N RGA
Sbjct: 175 RTPKP-LPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGA 232
Query: 249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCE 307
++D + +V LRG + GAGLDV + EP P L+AL N V++PH + + + E
Sbjct: 233 LVDTEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAE 291
Query: 308 LAVANLEAFFSNK 320
+AV NL A +
Sbjct: 292 VAVENLLAVLEGR 304
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 23/278 (8%)
Query: 54 LHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVF 113
L H K I +AGA ++++ S G++H+ + E ++RG+ + +V
Sbjct: 61 LSDHVDKRILDAAGA-----------NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVL 109
Query: 114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL---GSKLGGKRVGIVGLGSIG 170
++ A+ A+ LL+ R+L A V+ G W + PL G L VGI+GLG IG
Sbjct: 110 TDTTAELAVSLLLTTCRRLPEAIEEVKNGGW--TSWKPLWLCGYGLTQSTVGIIGLGRIG 167
Query: 171 SEVAKRLEAFGCC-VSYNSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHL 226
+A+RL+ FG Y R +P F + ELAA SD +++ C+LT T L
Sbjct: 168 QAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGL 227
Query: 227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFA 284
NK + + V IN+ RG ++++ ++ L G+I AGLDV EP +P L
Sbjct: 228 CNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP-LPTNHPLLT 286
Query: 285 LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
L N V+ PH T + + LA NL A +P+
Sbjct: 287 LKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 324
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 130/276 (47%), Gaps = 21/276 (7%)
Query: 54 LHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVF 113
L H K I +AGA ++++ S G++H+ + E ++RG+ + +V
Sbjct: 59 LSDHVDKRILDAAGA-----------NLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVL 107
Query: 114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL---GSKLGGKRVGIVGLGSIG 170
++ A+ A+ LL+ R+L A V+ G W + PL G L VGI+GLG IG
Sbjct: 108 TDTTAELAVSLLLTTCRRLPEAIEEVKNGGW--TSWKPLWLCGYGLTQSTVGIIGLGRIG 165
Query: 171 SEVAKRLEAFGCC-VSYNSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHL 226
+A+RL+ FG Y R +P F + ELAA SD +++ C+LT T L
Sbjct: 166 QAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGL 225
Query: 227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP-DVPEQLFAL 285
NK + V IN+ RG ++++ ++ L G+I AGLDV EP L L
Sbjct: 226 CNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTL 285
Query: 286 DNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321
N V+ PH T + LA NL A +P
Sbjct: 286 KNCVILPHIGSATHRTRNTXSLLAANNLLAGLRGEP 321
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 7/269 (2%)
Query: 56 AHSVKAIFSSAGAPVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFS 114
A SV A+ + E++ +PE ++ + S G +HID+ C+ RG+ + NA + +
Sbjct: 42 AKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVT 101
Query: 115 EDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL-GSKLGGKRVGIVGLGSIGSEV 173
A+ A+ LL+ R+ + +R WP L G KL K +GI G GSIG +
Sbjct: 102 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQAL 161
Query: 174 AKRLEAFGCCVSY-----NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228
AKR + F + Y S + + S F+ + L + S + T +T + N
Sbjct: 162 AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN 221
Query: 229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNV 288
K + +L + +++N RG ++D + +V L G + AG DVF EP++ E + L N
Sbjct: 222 KATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNT 281
Query: 289 VLSPHSAVFTPESFKDVCELAVANLEAFF 317
L PH ++ +D+ A ++A F
Sbjct: 282 FLFPHIGSAATQAREDMAHQANDLIDALF 310
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 12/265 (4%)
Query: 43 ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
+S L E L +A+ + V A+ L+ PE+R++ G ++ DV C R
Sbjct: 31 DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVG 162
GV L ++ + A+ A+GL + + R L AAD FVR G + G+ L VG
Sbjct: 90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVG 149
Query: 163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVC-ELAANSDVLIICCA 218
+G+G+IG +A RL+ +G + Y++R + T C EL A+SD +++
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVACSELFASSDFILLALP 209
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--- 275
L T HL+N ++L + +++N RG+++DE ++ L RG++GG DVFE E
Sbjct: 210 LNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWA 269
Query: 276 -PDVPEQLFALDNVVLSPHSAVFTP 299
D P+Q +D +L+ + +FTP
Sbjct: 270 RADRPQQ---IDPALLAHPNTLFTP 291
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 12/265 (4%)
Query: 43 ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
+S L E L +A+ + V A+ L+ PE+R++ G ++ DV C R
Sbjct: 31 DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVG 162
GV L ++ + A+ A+GL + + R L AAD FVR G + G+ L VG
Sbjct: 90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVG 149
Query: 163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVC-ELAANSDVLIICCA 218
+G+G+IG +A RL+ +G + Y++R + T C EL A+SD +++
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVACSELFASSDFILLALP 209
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--- 275
L T HL+N ++L + +++N RG+++DE ++ L RG++GG DVFE E
Sbjct: 210 LNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWA 269
Query: 276 -PDVPEQLFALDNVVLSPHSAVFTP 299
D P+Q +D +L+ + +FTP
Sbjct: 270 RADRPQQ---IDPALLAHPNTLFTP 291
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 12/265 (4%)
Query: 43 ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
+S L E L +A+ + V A+ L+ PE+R++ G ++ DV C R
Sbjct: 31 DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVG 162
GV L ++ + A+ A+GL + + R L AAD FVR G + G+ L VG
Sbjct: 90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVG 149
Query: 163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVC-ELAANSDVLIICCA 218
+G+G+IG +A RL+ +G + Y+ + T C EL A+SD +++
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALP 209
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--- 275
L T HL+N ++L + +++N RG+++DE ++ L RG++GG DVFE E
Sbjct: 210 LNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWA 269
Query: 276 -PDVPEQLFALDNVVLSPHSAVFTP 299
D P+Q +D +L+ + +FTP
Sbjct: 270 RADRPQQ---IDPALLAHPNTLFTP 291
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 12/265 (4%)
Query: 43 ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
+S L E L +A+ + V A+ L+ PE+R++ G ++ DV C R
Sbjct: 31 DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVG 162
GV L ++ + A+ A+GL + + R L AAD FVR G + G+ L VG
Sbjct: 90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVG 149
Query: 163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVC-ELAANSDVLIICCA 218
+G+G+IG +A RL+ +G + Y+ + T C EL A+SD +++
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALP 209
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--- 275
L T HL+N ++L + +++N RG+++DE ++ L RG++GG DVFE E
Sbjct: 210 LNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWA 269
Query: 276 -PDVPEQLFALDNVVLSPHSAVFTP 299
D P+Q +D +L+ + +FTP
Sbjct: 270 RADRPQQ---IDPALLAHPNTLFTP 291
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 148/299 (49%), Gaps = 18/299 (6%)
Query: 9 VQFPQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSA 66
V P VL+ K PS A LG+Q + +++ P + L A+ +
Sbjct: 2 VSLPVVLIADKLAPSTVAALGDQV----EVRWVDG-----PDRDKLLAAVPEADALLVRS 52
Query: 67 GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
V AE+L P++++V GL+++DV RGV + NA A++AL LL+
Sbjct: 53 ATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLL 112
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
R++ AAD +R+ W + F G+++ GK VG+VGLG IG VA+R+ AFG V
Sbjct: 113 AASRQIPAADASLREHTWK-RSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 170
Query: 187 NSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII- 242
P+ ++ +L A +D + + T +T LI+K+ L A K GVII
Sbjct: 171 YDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEAL-AKTKPGVIIV 229
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
N RG ++DE + + G + AGLDVF EP LF L VV++PH T E+
Sbjct: 230 NAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 288
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 148/299 (49%), Gaps = 18/299 (6%)
Query: 9 VQFPQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSA 66
V P VL+ K PS A LG+Q + +++ P + L A+ +
Sbjct: 1 VSLPVVLIADKLAPSTVAALGDQV----EVRWVDG-----PDRDKLLAAVPEADALLVRS 51
Query: 67 GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
V AE+L P++++V GL+++DV RGV + NA A++AL LL+
Sbjct: 52 ATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLL 111
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
R++ AAD +R+ W + F G+++ GK VG+VGLG IG VA+R+ AFG V
Sbjct: 112 AASRQIPAADASLREHTWK-RSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 169
Query: 187 NSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII- 242
P+ ++ +L A +D + + T +T LI+K+ L A K GVII
Sbjct: 170 YDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEAL-AKTKPGVIIV 228
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
N RG ++DE + + G + AGLDVF EP LF L VV++PH T E+
Sbjct: 229 NAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 287
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 21/266 (7%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+T E+L P ++L+ S G +HID+ C+++G+ + + E VA++ ++ ++
Sbjct: 54 LTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLV 113
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
++L + V++ + ++E L +L +G++G G IGS VA AFG V
Sbjct: 114 KRLKRIEDRVKKLNFSQDSEI-LARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDV 172
Query: 190 NKKPSVTYP--FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINVGR 246
K+ + Y + EL SDV+ + T +THH IN++ ++L K GV +IN R
Sbjct: 173 VKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEE-RISLXKDGVYLINTAR 231
Query: 247 GAIIDEKEMVGCLLRGEIGGAGLDVFENE-------------PDVPEQLFAL---DNVVL 290
G ++D + RG+ G GLDVFE+E D ++ L DNV++
Sbjct: 232 GKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII 291
Query: 291 SPHSAVFTPESFKDVCELAVANLEAF 316
+PH A +T +S + + E V ++AF
Sbjct: 292 TPHIAYYTDKSLERIREETVKVVKAF 317
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 11/238 (4%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
V A+ L+ PE+R++ G ++ DV C RGV L ++ + A+ A+GL + +
Sbjct: 58 VDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLG 117
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
R L AAD FVR G + G+ L VG +G G+IG A RL+ +G + Y++
Sbjct: 118 RHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAA 177
Query: 190 NKKPSVTYP---FYPDVC-ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
+ T C EL A+SD +++ L T HL+N ++L + +++N
Sbjct: 178 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 237
Query: 246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENE----PDVPEQLFALDNVVLSPHSAVFTP 299
RG+++DE ++ L RG++GG DVFE E D P+Q +D +L+ + +FTP
Sbjct: 238 RGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQ---IDPALLAHPNTLFTP 292
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 130/275 (47%), Gaps = 15/275 (5%)
Query: 69 PVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
P A+I+ LP +++ A AG + +D+ RGVA AN+ +D AL L++
Sbjct: 68 PWNADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 128 VLRKLSAADCFVRQGLWPI--NAEFPLGSKLGGKR---VGIVGLGSIGSEVAKR-LEAFG 181
V R S ++ R G +G R +G VGLG+I E+A++ + G
Sbjct: 128 VFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLG 187
Query: 182 CCVSY------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL 235
+ Y ++ +K ++ + ELA SD + + THHLI++ A+
Sbjct: 188 MKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAM 246
Query: 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295
I+N RG +I + ++ L G++ AGLDV E EP V ++L + +V L+ H
Sbjct: 247 KPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIG 306
Query: 296 VFTPESFKDVCELAVANLEAF-FSNKPLLTPFAAV 329
E+F + L + N++ F KPLLTP V
Sbjct: 307 GVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKV 341
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 15/275 (5%)
Query: 69 PVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
P A+++ LP +++ A AG + +D+ RGVA AN+ +D AL L++
Sbjct: 68 PWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 128 VLRKLSAADCFVRQGLWPI--NAEFPLGSKLGGKR---VGIVGLGSIGSEVAKR-LEAFG 181
V R S ++ R G +G R +G VGLG+I E+A++ + G
Sbjct: 128 VFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLG 187
Query: 182 CCVSY------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL 235
+ Y ++ +K ++ + ELA SD + + THHLI++ A+
Sbjct: 188 MKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAM 246
Query: 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295
I+N RG +I + ++ L G++ AGLDV E EP+V ++L + +V L+ H
Sbjct: 247 KPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIG 306
Query: 296 VFTPESFKDVCELAVANLEAF-FSNKPLLTPFAAV 329
E+F + L + N++ F KPLLTP V
Sbjct: 307 GVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKV 341
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 15/275 (5%)
Query: 69 PVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
P A+++ LP +++ A AG + +D+ RGVA AN+ +D AL L++
Sbjct: 68 PWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 128 VLRKLSAADCFVRQGLWPI--NAEFPLGSKLGGKR---VGIVGLGSIGSEVAKR-LEAFG 181
V R S ++ R G +G R +G VGLG+I E+A++ + G
Sbjct: 128 VFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLG 187
Query: 182 CCVSY------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL 235
+ Y ++ +K ++ + ELA SD + + THHLI++ A+
Sbjct: 188 MKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAM 246
Query: 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295
I+N RG +I + ++ L G++ AGLDV E EP V ++L + +V L+ H
Sbjct: 247 KPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIG 306
Query: 296 VFTPESFKDVCELAVANLEAF-FSNKPLLTPFAAV 329
E+F + L + N++ F KPLLTP V
Sbjct: 307 GVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKV 341
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 7/257 (2%)
Query: 49 HEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN 108
E L + + + VTA+++ ++++V G++++D+ R+G+ + N
Sbjct: 58 KEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMN 117
Query: 109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGS 168
N S A+ G+++ + R++ A ++ G W +F +G++L GK +GI+GLG
Sbjct: 118 TPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE-RKKF-MGTELNGKTLGILGLGR 175
Query: 169 IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPD---VCELAANSDVLIICCALTDQTHH 225
IG EVA R+++FG P V+ F + E+ D + + L T
Sbjct: 176 IGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTG 235
Query: 226 LINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA 284
L+N A KKGV ++N RG I+DE ++ L G+ GA LDVF EP L
Sbjct: 236 LLNDNTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVD 294
Query: 285 LDNVVLSPHSAVFTPES 301
+NV+ PH T E+
Sbjct: 295 HENVISCPHLGASTKEA 311
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 129/262 (49%), Gaps = 11/262 (4%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+T E L +R++V +G ++ID+ G+A+ N E+ AD L ++++
Sbjct: 78 LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
R+ + +R+G + I +++ G+ +GI+GLG +G VA R +AFG V
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNV 197
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
Y S + ++ + +L +SD + + C L + HHLIN + + +
Sbjct: 198 LFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 257
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
++N RG ++DEK + L G I GA LDV E+EP Q L N++ +PH+A ++
Sbjct: 258 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 317
Query: 299 PESFKDVCELAVANLEAFFSNK 320
++ ++ E A + + +
Sbjct: 318 EQASIEMREEAAREIRRAITGR 339
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 129/262 (49%), Gaps = 11/262 (4%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+T E L +R++V +G ++ID+ G+A+ N E+ AD L ++++
Sbjct: 78 LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
R+ + +R+G + I +++ G+ +GI+GLG +G VA R +AFG V
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNV 197
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
Y S + ++ + +L +SD + + C L + HHLIN + + +
Sbjct: 198 LFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 257
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
++N RG ++DEK + L G I GA LDV E+EP Q L N++ +PH+A ++
Sbjct: 258 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 317
Query: 299 PESFKDVCELAVANLEAFFSNK 320
++ ++ E A + + +
Sbjct: 318 EQASIEMREEAAREIRRAITGR 339
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 17/244 (6%)
Query: 86 ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
+T AG++ + CRR L N +F +++Y G L+ ++R+L +Q LW
Sbjct: 73 STYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQ 131
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPD 202
+ L G+ + I+G GSIG +A + FG V SR+ + + P
Sbjct: 132 SHPY----QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPA 187
Query: 203 VCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG 262
+ ++ A +DV++ T +THHL ++ NVGRG I+E +++ L G
Sbjct: 188 LNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTG 247
Query: 263 EIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFT-PESFKDVCELAVANLEAFFS 318
++G A LDVFE EP D P L+ N++++PH++ ++ P+ DV ++ V N F
Sbjct: 248 KLGMAVLDVFEQEPLPADSP--LWGQPNLIITPHNSAYSFPD---DVAQIFVRNYIRFID 302
Query: 319 NKPL 322
+PL
Sbjct: 303 GQPL 306
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 129/262 (49%), Gaps = 11/262 (4%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+T E L +R++V +G ++ID+ G+A+ N E+ AD L ++++
Sbjct: 75 LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 134
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
R+ + +R+G + I +++ G+ +GI+GLG +G VA R +AFG V
Sbjct: 135 RRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNV 194
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
Y S + ++ + +L +SD + + C L + HHLIN + + +
Sbjct: 195 LFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 254
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
++N RG ++DEK + L G I GA LDV E+EP Q L N++ +PH+A ++
Sbjct: 255 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 314
Query: 299 PESFKDVCELAVANLEAFFSNK 320
++ ++ E A + + +
Sbjct: 315 EQASIEMREEAAREIRRAITGR 336
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 128/262 (48%), Gaps = 11/262 (4%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+T E L +R++V +G ++ID+ G+A+ N E+ AD L ++++
Sbjct: 78 LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
R+ + +R+G + I +++ G+ +GI+GL +G VA R +AFG V
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNV 197
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
Y S + ++ + +L +SD + + C L + HHLIN + + +
Sbjct: 198 LFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 257
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
++N RG ++DEK + L G I GA LDV E+EP Q L N++ +PH+A ++
Sbjct: 258 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 317
Query: 299 PESFKDVCELAVANLEAFFSNK 320
++ ++ E A + + +
Sbjct: 318 EQASIEMREEAAREIRRAITGR 339
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 140/308 (45%), Gaps = 38/308 (12%)
Query: 13 QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSS------A 66
VLLL G + ++F S+ + + AL A +KAI S+ +
Sbjct: 17 NVLLLE---GISQTAVEYFKSSGYTNVTHLPKALD-------KADLIKAISSAHIIGIRS 66
Query: 67 GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
+T EI + V S G N +++ R+RG+ + NA + VA+ +G +I
Sbjct: 67 RTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEII 126
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSK-LGGKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
++R++ G W A +GS+ + GK +GIVG G+IGS+V E+ G V
Sbjct: 127 MLMRRIFPRSVSAHAGGWEKTA---IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVR 183
Query: 186 YNSR-------NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK 238
Y N KP+ + + EL SDV+ + + T LI + L + K
Sbjct: 184 YYDTSDKLQYGNVKPAAS------LDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKG 237
Query: 239 GVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA-----LDNVVLSPH 293
+IN RG+ +D + + L G + GA +DVF EP + F+ L+NV+L+PH
Sbjct: 238 AFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPH 297
Query: 294 SAVFTPES 301
T E+
Sbjct: 298 IGGSTEEA 305
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 33/314 (10%)
Query: 34 NKFQYLKAYE----SALPLH-EFLTLH----AHSVKAIFSSAGAPVTAEILRLLPE--VR 82
++ QY K + + L H EFL + A I S P A + + ++
Sbjct: 11 DEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIK 70
Query: 83 LVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQG 142
+ + G ++ID+ ++ G+ L+N +A++AL + +LR + ++ G
Sbjct: 71 FLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAG 130
Query: 143 LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV----SYNSRNKKPSVTYP 198
+ F +G +LG + VG++G G IG K + FG V Y + P Y
Sbjct: 131 DYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYV 189
Query: 199 FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGC 258
D L SDV+ + +Q H+IN+ + ++IN R +ID + M+
Sbjct: 190 SLED---LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSN 246
Query: 259 LLRGEIGGAGLDVFENEPD--------------VPEQLFALDNVVLSPHSAVFTPESFKD 304
L G++ G G+D +E E + + ++L + NVVLSPH A +T + +
Sbjct: 247 LKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHN 306
Query: 305 VCELAVANLEAFFS 318
+ ++ +L F +
Sbjct: 307 MVYFSLQHLVDFLT 320
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 126/262 (48%), Gaps = 11/262 (4%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+T E L +R++V +G +++D+ G+A+ N + E+ AD + ++++
Sbjct: 59 LTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLY 118
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
R+ + +R+G + I +++ G+ +G++G G G VA R +AFG V
Sbjct: 119 RRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 178
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
Y + S+ + +L SD + + C L + HHLIN + + +
Sbjct: 179 IFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAF 238
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
++N RG ++DEK + L G I GA LDV E+EP Q L N++ +PH+A ++
Sbjct: 239 LVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYS 298
Query: 299 PESFKDVCELAVANLEAFFSNK 320
++ ++ E A + + +
Sbjct: 299 EQASLEMREAAATEIRRAITGR 320
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 13/305 (4%)
Query: 30 FFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP--VTAEILRLLPEVRLVVAT 87
+ S QY+ + P E L H + + S+ P VTAE ++ ++L++
Sbjct: 35 WLESQGHQYIVTDDKEGPDCE-LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTA 93
Query: 88 SAGLNHIDVVECRRRGVALA--NAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
G +HID+ G+ +A NV S VA+ L ++ ++R V +G W
Sbjct: 94 GIGSDHIDLQAAAAAGLTVAEVTGSNVVS--VAEDELMRILILMRNFVPGYNQVVKGEWN 151
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK-----KPSVTYPFY 200
+ L GK +G VG G IG + +RL+ FGC + Y+ R + + F
Sbjct: 152 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV 211
Query: 201 PDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260
D+ E+ DV++I LT++T + NK+++ L K +I+N RGAI++ + +V +
Sbjct: 212 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE 271
Query: 261 RGEIGGAGLDVFENEPDVPEQLFA-LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSN 319
G IGG DV++ +P + + + N ++PH++ T ++ LE +F
Sbjct: 272 SGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKG 331
Query: 320 KPLLT 324
+ T
Sbjct: 332 EDFPT 336
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 13/305 (4%)
Query: 30 FFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP--VTAEILRLLPEVRLVVAT 87
+ S QY+ + P E L H + + S+ P VTAE ++ ++L++
Sbjct: 41 WLESQGHQYIVTDDKEGPDCE-LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTA 99
Query: 88 SAGLNHIDVVECRRRGVALA--NAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
G +HID+ G+ +A NV S VA+ L ++ ++R V +G W
Sbjct: 100 GIGSDHIDLQAAAAAGLTVAEVTGSNVVS--VAEDELMRILILMRNFVPGYNQVVKGEWN 157
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK-----KPSVTYPFY 200
+ L GK +G VG G IG + +RL+ FGC + Y+ R + + F
Sbjct: 158 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV 217
Query: 201 PDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260
D+ E+ DV++I LT++T + NK+++ L K +I+N RGAI++ + +V +
Sbjct: 218 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE 277
Query: 261 RGEIGGAGLDVFENEPDVPEQLFA-LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSN 319
G IGG DV++ +P + + + N ++PH++ T ++ LE +F
Sbjct: 278 SGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKG 337
Query: 320 KPLLT 324
+ T
Sbjct: 338 EDFPT 342
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 22/263 (8%)
Query: 70 VTAEILRLLPEVRLV-----VATSAGLNHIDVVECRRRGVA-LANAGNVFSEDVADYALG 123
VT ++L LP+++++ V+ AG HID+ C +GV L G+ + A+
Sbjct: 61 VTRQLLDRLPKLKIISQTGRVSRDAG-GHIDLEACTDKGVVVLEGKGSPVAP--AELTWA 117
Query: 124 LLIDVLRKLSAADCFVRQGLWPINA--------EFPLGSKLGGKRVGIVGLGSIGSEVAK 175
L++ R++ ++ G W + F +G L G+ +GI G G IG VA
Sbjct: 118 LVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177
Query: 176 RLEAFGCCV----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231
AFG V NS+ + + + L SDVL + L D+T +I
Sbjct: 178 YGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD 237
Query: 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVL 290
L + + +N R +++E MV L RG G A +DVFE EP + L ++N +
Sbjct: 238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC 297
Query: 291 SPHSAVFTPESFKDVCELAVANL 313
+PH ES++ +A N+
Sbjct: 298 TPHIGYVERESYEMYFGIAFQNI 320
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 12/285 (4%)
Query: 52 LTLHAHSVKAIFSSAGAP--VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA 109
L H H + I S P +TAE + P+++L + G +H+D+ + +A
Sbjct: 84 LEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV 143
Query: 110 GNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI 169
S VA++ + +++ ++R + + R G W I + G VG V G I
Sbjct: 144 TYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRI 203
Query: 170 GSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTH 224
G V + L F + Y R++ P + ++ ++ DV+ + C L +T
Sbjct: 204 GLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETE 263
Query: 225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQ 281
H+IN + L + ++N RG + D +V L G + G DV+ +P D P +
Sbjct: 264 HMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWR 323
Query: 282 LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF 326
+ ++PH + + + LE +F +P+ +
Sbjct: 324 TMPHNG--MTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEY 366
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 12/285 (4%)
Query: 52 LTLHAHSVKAIFSSAGAP--VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA 109
L H H + I S P +TAE + P+++L + G +H+D+ + +A
Sbjct: 83 LEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV 142
Query: 110 GNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI 169
S VA++ + +++ ++R + + R G W I + G VG V G I
Sbjct: 143 TYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRI 202
Query: 170 GSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTH 224
G V + L F + Y R++ P + ++ ++ DV+ + C L +T
Sbjct: 203 GLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETE 262
Query: 225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQ 281
H+IN + L + ++N RG + D +V L G + G DV+ +P D P +
Sbjct: 263 HMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWR 322
Query: 282 LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF 326
+ ++PH + + + LE +F +P+ +
Sbjct: 323 TMPHNG--MTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEY 365
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 120/259 (46%), Gaps = 12/259 (4%)
Query: 62 IFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYA 121
I + VT +++ +++++ GL++ID E +R + + A ++ +
Sbjct: 50 IVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELT 109
Query: 122 LGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG 181
+GL+I RK+ + + G++ + G +L GK +GIVG G IG++V A G
Sbjct: 110 IGLMIAAARKMYTSMALAKSGIF----KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMG 165
Query: 182 CCV-SY---NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
V +Y + R K + + EL NSDV+ + ++ +I+ +
Sbjct: 166 MKVLAYDILDIREKAEKINAKAVS-LEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD 224
Query: 238 KGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE---QLFALDNVVLSPHS 294
+I+N R ++ K ++ + +G++ DVF NEP E +L + V+++ H
Sbjct: 225 NVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHI 284
Query: 295 AVFTPESFKDVCELAVANL 313
T E+ K V E+ NL
Sbjct: 285 GAQTKEAQKRVAEMTTQNL 303
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 121/261 (46%), Gaps = 8/261 (3%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+T +++ ++ + A + G N +D+ +RG+ + NA + VA+ +G L+ +L
Sbjct: 65 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLL 124
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNS 188
R + A+ +G+W A ++ GK++GI+G G IG+++ E+ G V Y+
Sbjct: 125 RGVPEANAKAHRGVWNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDI 182
Query: 189 RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248
NK P + +L SDV+ + T +++ + + + ++IN RG
Sbjct: 183 ENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGT 242
Query: 249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESFK 303
++D + L + GA +DVF EP F DNV+L+PH T E+ +
Sbjct: 243 VVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302
Query: 304 DVCELAVANLEAFFSNKPLLT 324
++ L + N L+
Sbjct: 303 NIGLEVAGKLIKYSDNGSTLS 323
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 121/261 (46%), Gaps = 8/261 (3%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+T +++ ++ + A + G N +D+ +RG+ + NA + VA+ +G L+ +L
Sbjct: 65 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLL 124
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNS 188
R + A+ +G+W A ++ GK++GI+G G IG+++ E+ G V Y+
Sbjct: 125 RGVPEANAKAHRGVWNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDI 182
Query: 189 RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248
NK P + +L SDV+ + T +++ + + + ++IN RG
Sbjct: 183 ENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGT 242
Query: 249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESFK 303
++D + L + GA +DVF EP F DNV+L+PH T E+ +
Sbjct: 243 VVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302
Query: 304 DVCELAVANLEAFFSNKPLLT 324
++ L + N L+
Sbjct: 303 NIGLEVAGKLIKYSDNGSTLS 323
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 10/263 (3%)
Query: 68 APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
A +T E + ++L + G +H+D+ R V +A S VA++ + +++
Sbjct: 102 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 161
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
++R + + R+G W I L VG V G IG V +RL F + Y
Sbjct: 162 LVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT 221
Query: 188 SRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
R++ P + ++ ++ DV+ + C L +T H+IN + L + I+
Sbjct: 222 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV 281
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFTP 299
N RG + D + L G + G DV+ +P D P + + ++PH + T
Sbjct: 282 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTL 339
Query: 300 ESFKDVCELAVANLEAFFSNKPL 322
+ LE FF +P+
Sbjct: 340 TAQARYAAGTREILEXFFEGRPI 362
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 10/263 (3%)
Query: 68 APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
A +T E + ++L + G +H+D+ R V +A S VA++ + +++
Sbjct: 102 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 161
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
++R + + R+G W I L VG V G IG V +RL F + Y
Sbjct: 162 LVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT 221
Query: 188 SRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
R++ P + ++ ++ DV+ + C L +T H+IN + L + I+
Sbjct: 222 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV 281
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFTP 299
N RG + D + L G + G DV+ +P D P + + ++PH + T
Sbjct: 282 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTL 339
Query: 300 ESFKDVCELAVANLEAFFSNKPL 322
+ LE FF +P+
Sbjct: 340 TAQARYAAGTREILECFFEGRPI 362
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 10/263 (3%)
Query: 68 APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
A +T E + ++L + G +H+D+ R V +A S VA++ + +++
Sbjct: 101 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 160
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
++R + + R+G W I L VG V G IG V +RL F + Y
Sbjct: 161 LVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT 220
Query: 188 SRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
R++ P + ++ ++ DV+ + C L +T H+IN + L + I+
Sbjct: 221 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV 280
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFTP 299
N RG + D + L G + G DV+ +P D P + + ++PH + T
Sbjct: 281 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTL 338
Query: 300 ESFKDVCELAVANLEAFFSNKPL 322
+ LE FF +P+
Sbjct: 339 TAQARYAAGTREILECFFEGRPI 361
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 8/241 (3%)
Query: 90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE 149
G N +D+ +RG+ + NA + VA+ +G L+ +LR + A+ +G+W A
Sbjct: 84 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 143
Query: 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKKPSVTYPFYPDVCELAA 208
++ GK++GI+G G IG+++ E+ G V Y+ NK P + +L
Sbjct: 144 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 201
Query: 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAG 268
SDV+ + T +++ + + + ++IN RG ++D + L + GA
Sbjct: 202 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAA 261
Query: 269 LDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323
+DVF EP F DNV+L+PH T E+ +++ L + N L
Sbjct: 262 IDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 321
Query: 324 T 324
+
Sbjct: 322 S 322
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 113/237 (47%), Gaps = 21/237 (8%)
Query: 69 PVTAEIL-RLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
P+ IL R +++ V SAG++++ + + GV +AN + ++ +++ L ++
Sbjct: 49 PLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLS 108
Query: 128 VLRKLSAA---DCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
V+R AA RQ P+ S L G+++ I G G IG +A + A G V
Sbjct: 109 VVRGYHAAWLNQRGARQWALPMTT-----STLTGQQLLIYGTGQIGQSLAAKASALGMHV 163
Query: 185 SYNSRNKKPSVTYPFYPDVCELAANS-----DVLIICCALTDQTHHLINKQVLLALGKKG 239
+ P+ F+ V A + ++ LT THHL + ++ ++
Sbjct: 164 IGVNTTGHPADH--FHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQP 221
Query: 240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPH 293
++IN+GRG +D ++ L ++ A LDV E EP D P L+ D+V+++PH
Sbjct: 222 MLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHP--LWQRDDVLITPH 276
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 23/242 (9%)
Query: 90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQG---LWPI 146
G N I+ ++ + + N +A+ + + +LRK+ + WP
Sbjct: 80 GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPS 139
Query: 147 NAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF--YPDVC 204
N + +++ VG++G+G IGS VA+ A G V P PF Y D
Sbjct: 140 NL---ISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFE-PFLTYTDFD 195
Query: 205 ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI 264
+ +D++ + L T ++I ++ L + K +IN RG ++D ++ L GEI
Sbjct: 196 TVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEI 255
Query: 265 GGAGLDVFENE-----------PDVPEQ---LFALDNVVLSPHSAVFTPESFKDVCELAV 310
GAGLD E ++PE L + NVV++PHSA +T S +++ ++ +
Sbjct: 256 AGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICL 315
Query: 311 AN 312
+
Sbjct: 316 TD 317
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 8/241 (3%)
Query: 90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE 149
G N +D+ +RG+ + NA + VA+ +G L+ +LR + A+ +G+W A
Sbjct: 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 144
Query: 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKKPSVTYPFYPDVCELAA 208
++ GK++GI+G G IG+++ E+ G V Y+ NK P + +L
Sbjct: 145 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSDLLN 202
Query: 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAG 268
SDV+ + T + + + ++IN RG ++D + L + GA
Sbjct: 203 XSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAA 262
Query: 269 LDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323
+DVF EP F DNV+L+PH T E+ +++ L + N L
Sbjct: 263 IDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 322
Query: 324 T 324
+
Sbjct: 323 S 323
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 11/202 (5%)
Query: 119 DYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE 178
+YA+ ++ R+ Q LW E+ VGI G G +G++VA+ L+
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEF----SVGIXGAGVLGAKVAESLQ 159
Query: 179 AFGCCVSYNSRNKKPSVTYPFYPDVCELAA---NSDVLIICCALTDQTHHLINKQVLLAL 235
A+G + SR++K Y EL A + VLI T QT +IN ++L L
Sbjct: 160 AWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQL 219
Query: 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPH 293
++N+ RG + E +++ L G++ GA LDVF EP +P++ L+ V +PH
Sbjct: 220 PDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP-LPQESPLWRHPRVAXTPH 278
Query: 294 -SAVFTPESFKDVCELAVANLE 314
+AV P D + LE
Sbjct: 279 IAAVTRPAEAIDYISRTITQLE 300
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 22/256 (8%)
Query: 88 SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFV-RQGL-WP 145
+ G+++ID+ + + G + N +A++A +LR+ A D V R L W
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP-FYPD-V 203
+G ++ + VG+VG G IG + +E FG V + P + +Y D +
Sbjct: 138 PT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSL 193
Query: 204 CELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE 263
+L +DV+ + H+IN + + + + VI+NV RG ++D ++ L G+
Sbjct: 194 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGK 253
Query: 264 IGGAGLDVFENE-------------PDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELA 309
I G +DV+E E PD L A NV+++PH+A +T + +++ A
Sbjct: 254 IFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVKA 313
Query: 310 VANLEAFFSNKPLLTP 325
N K TP
Sbjct: 314 FDNNLELVEGKEAETP 329
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 118/262 (45%), Gaps = 10/262 (3%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+T +++ ++ + A + G N +D+ +RG+ + NA + VA+ +G L+ +L
Sbjct: 59 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLL 118
Query: 130 RKLSAADCFVRQGLWPINAEFPLGS-KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YN 187
R + A+ +G + + GS + GK++GI+G G IG+++ E+ G V Y+
Sbjct: 119 RGVPEANAKAHRG---VGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD 175
Query: 188 SRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG 247
NK P + +L SDV+ + T + + + ++IN RG
Sbjct: 176 IENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRG 235
Query: 248 AIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESF 302
++D + L + GA +DVF EP F DNV+L+PH T E+
Sbjct: 236 TVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 295
Query: 303 KDVCELAVANLEAFFSNKPLLT 324
+++ L + N L+
Sbjct: 296 ENIGLEVAGKLIKYSDNGSTLS 317
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 120/256 (46%), Gaps = 8/256 (3%)
Query: 63 FSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYAL 122
+ A A V + L + + A SAG++HIDV V +NAG +S VA++A
Sbjct: 32 YYDAEAQVIKDRYVLGKRTKXIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAF 90
Query: 123 GLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC 182
LL+ + + + + G++ + P + L GK +GI+G G IG VA +AFG
Sbjct: 91 ALLLAHAKNILENNELXKAGIF---RQSPT-TLLYGKALGILGYGGIGRRVAHLAKAFGX 146
Query: 183 CVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
V +R+ +L SD ++I LTD+T +N ++L K I+
Sbjct: 147 RVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIV 206
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESF 302
NV R ++ + + +G L DV+ NEP++ E L N +LSPH A
Sbjct: 207 NVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITET--NLRNAILSPHVAGGXSGEI 264
Query: 303 KDVC-ELAVANLEAFF 317
D+ +LA N+ FF
Sbjct: 265 XDIAIQLAFENVRNFF 280
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 20/270 (7%)
Query: 68 APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALA----NAGNVFSEDVADYALG 123
A +T E + +++LVV G +HID+ + G ++ NV S VA++ +
Sbjct: 72 AYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVM 129
Query: 124 LLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG-- 181
++ ++R A + W + A + GK + +G G IG V +RL F
Sbjct: 130 TMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPK 189
Query: 182 --CCVSYNS--RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
Y + ++ + V ++ EL A +D++ + L T LINK++L K
Sbjct: 190 ELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249
Query: 238 KGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVP----EQLFALDNVVL 290
++N RGAI +++ L G++ G G DV+ +P D P + N +
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AM 308
Query: 291 SPHSAVFTPESFKDVCELAVANLEAFFSNK 320
+PH + T ++ + V LE+FF+ K
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTGK 338
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 115/256 (44%), Gaps = 22/256 (8%)
Query: 88 SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFV-RQGL-WP 145
+ G+++ID+ + + G + N +A++A +LR+ A D V R L W
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP-FYPD-V 203
+G ++ + VG+VG G IG + +E FG V + P + +Y D +
Sbjct: 138 PT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSL 193
Query: 204 CELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE 263
+L +DV+ + H+IN + + + + VI+NV RG ++D ++ L G+
Sbjct: 194 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGK 253
Query: 264 IGGAGLDVFENE-------------PDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELA 309
I G +DV+E E PD L A NV+++P +A +T + +++ A
Sbjct: 254 IFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKA 313
Query: 310 VANLEAFFSNKPLLTP 325
N K TP
Sbjct: 314 FDNNLELVEGKEAETP 329
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 20/270 (7%)
Query: 68 APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALA----NAGNVFSEDVADYALG 123
A +T E + +++LVV G +HID+ + G ++ NV S VA++ +
Sbjct: 73 AYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVM 130
Query: 124 LLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG-- 181
++ ++R A + W + A + GK + +G G IG V +RL F
Sbjct: 131 TMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPK 190
Query: 182 --CCVSYNS--RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
Y + ++ + V ++ EL A +D++ + L T LINK++L K
Sbjct: 191 ELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 250
Query: 238 KGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVP----EQLFALDNVVL 290
++N RGAI +++ L G++ G G DV+ +P D P + N +
Sbjct: 251 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AM 309
Query: 291 SPHSAVFTPESFKDVCELAVANLEAFFSNK 320
+PH + T ++ + LE+FF+ K
Sbjct: 310 TPHYSGTTLDAQTRYAQGTKNILESFFTGK 339
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 111/250 (44%), Gaps = 17/250 (6%)
Query: 81 VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR 140
V+ ++ +AG +HID + G +A +A+ A+ + +LR +
Sbjct: 70 VKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTA 129
Query: 141 QGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV-SYNSRNKKPSVTYPF 199
+ + ++A F ++ VG+VGLG IG A+ G V + K Y
Sbjct: 130 KKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCT 188
Query: 200 YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCL 259
+ E+ SD++ I + ++ + L + +++N RG ++D + ++ +
Sbjct: 189 QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248
Query: 260 LRGEIGGAGLDVFENEPDV------------P--EQLFAL-DNVVLSPHSAVFTPESFKD 304
G++GG G DV + E V P E+L L V+++PH +T E+ K+
Sbjct: 249 ESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKN 308
Query: 305 VCELAVANLE 314
+ E++ NL+
Sbjct: 309 MVEVSYQNLK 318
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 125/272 (45%), Gaps = 25/272 (9%)
Query: 71 TAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
TA+ L+ L + V + + G+++ID+ + + G + N +A++A V
Sbjct: 59 TADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARV 118
Query: 129 LRKLSAADCFV--RQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
LR+ D + R W +G ++ + VG+VG G IG + +E FG V
Sbjct: 119 LRQDKRMDEKMAKRDLRWAPT----IGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIA 174
Query: 187 NSRNKKPSVTYP-FYPD-VCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV 244
K P + +Y D + +L +DV+ + H+IN + + + VI+N
Sbjct: 175 YDIFKNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNC 234
Query: 245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENE----------PDVPEQLFA--LD--NVVL 290
RG ++D ++ L G+I G +D +E+E + P++ A +D NV++
Sbjct: 235 SRGRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLV 294
Query: 291 SPHSAVFTPESFKDVCELAV-ANLEAFFSNKP 321
+PH+A +T + +++ A NL+ KP
Sbjct: 295 TPHTAFYTTHAVRNMVVKAFNNNLKLINGEKP 326
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 7/228 (3%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
+TAE L P ++ + +AGL+H+ NAG+ ++ VA++AL LL+
Sbjct: 40 ITAEELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAGS-NADAVAEFALALLLAPY 98
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
+++ ++G + + E PL + G++V ++GLG IG+ V K L A G V SR
Sbjct: 99 KRIIQYGEKXKRGDYGRDVEIPL---IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSR 155
Query: 190 NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI 249
K + F + E + + L T L+ Q L + V +NVGR +
Sbjct: 156 TPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEV 214
Query: 250 IDEKEMVGCLLRGEIGGAGLDVFENEPDVPE--QLFALDNVVLSPHSA 295
+D ++ L DV+ D + + F+L NVV +P A
Sbjct: 215 LDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVA 262
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 25/224 (11%)
Query: 81 VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR 140
+ V +AG +H+D ++ G+ + A + V +Y L+ L+ D F
Sbjct: 62 INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALL----XLAERDGF-- 115
Query: 141 QGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFY 200
L + +GIVG+G++GS + RLEA G + +
Sbjct: 116 --------------SLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDF 161
Query: 201 PDVCELAANSDVLIICCALTD----QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
+ EL +DVL L +T HL ++ ++ L ++IN RG ++D ++
Sbjct: 162 RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALL 221
Query: 257 GCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300
L G+ LDV+E EPD+ L ++ S H A +T E
Sbjct: 222 ARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGTS-HIAGYTLE 264
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 104/252 (41%), Gaps = 29/252 (11%)
Query: 69 PVTAEILRLLPEVRLVVATSAGL-NHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
P++AE L P +R ++ + L N+ +RG+ + G VF+E VA+ LG +
Sbjct: 85 PLSAETLARXPALRSILNVESNLLNNXPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALA 144
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKL-GGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
+ R + AD ++G E ++L G +GIVG G +G + + L F +
Sbjct: 145 LARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARI-- 202
Query: 187 NSRNKKPSVTYPFYP------------DVCELAANSDVLIICCALTDQTHHLINKQVLLA 234
V P+ P + ++ SD + + A+T + + + +
Sbjct: 203 -------RVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSS 255
Query: 235 LGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLS 291
+ I + R ++D + + G I A DV+ EP D P + +L + S
Sbjct: 256 XRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DVYPEEPLPLDHP--VRSLKGFIRS 312
Query: 292 PHSAVFTPESFK 303
H A +FK
Sbjct: 313 AHRAGALDSAFK 324
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 81 VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR 140
VR V + G +H+D+ G+A ++A + V DY LG L+ A VR
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLL--------AMAEVR 110
Query: 141 QGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFY 200
G+ L + G+VG G +G + + L G V ++ +
Sbjct: 111 ------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEF 158
Query: 201 PDVCELAANSDVLIICCALTDQ----THHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
+ L A +DV+ + L T HL+++ L AL ++N RGA++D + +
Sbjct: 159 VSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALR 218
Query: 257 GCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300
L G LDV+E EP +L A ++ +PH A ++ E
Sbjct: 219 RLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLE 261
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 110 GNVFSEDVADYALGLLIDV-LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGS 168
G V+ A+GLL + L D F +G A +P G L G+RVG++G GS
Sbjct: 164 GEVYRAKYVVNAVGLLSAINFPNLPGLDTF--EGETIHTAAWPEGKSLAGRRVGVIGTGS 221
Query: 169 IGSEVAKRL 177
G +V L
Sbjct: 222 TGQQVITSL 230
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 110 GNVFSEDVADYALGLLIDV-LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGS 168
G V+ A+GLL + L D F +G A +P G L G+RVG++G GS
Sbjct: 131 GEVYRAKYVVNAVGLLSAINFPNLPGLDTF--EGETIHTAAWPEGKSLAGRRVGVIGTGS 188
Query: 169 IGSEVAKRL 177
G +V L
Sbjct: 189 TGQQVITSL 197
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 144 WPINAE-FPLGSKLGGKRVGIVGLGSIG-------SEVAKRLEAF 180
WP +AE P G GKRVG++G G+ G +E AK L F
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVF 214
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCA 218
++ G +GLG +GS +AK L GC V+ N+ P E AA ++ C
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTI--WNRSPEKAEELAALGAERAATPXEVVESCP 59
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVGRG 247
+T + GK GV+ +G G
Sbjct: 60 VTFAMLADPAAAEEVCFGKHGVLEGIGEG 88
>pdb|4AY7|A Chain A, Methyltransferase From Methanosarcina Mazei
pdb|4AY7|B Chain B, Methyltransferase From Methanosarcina Mazei
Length = 348
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 177 LEAFGCCVSYNSRNKKPSVT-YPFYPDVCELAANSDVL 213
+EA GC ++ ++N++PSVT +P+ D+ A +D+L
Sbjct: 88 VEAMGCEINMGTKNRQPSVTGHPYPKDLEGAAVPADLL 125
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 16 LLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHE--------FLTLHAHSVKAIFSSAG 67
L R P+ +LG+ + A E+ L + FL L+ +V A+
Sbjct: 180 LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDI 239
Query: 68 APVTAEILRLLPEVRLVVATSAG 90
A + AE+L L PE+RLV +T G
Sbjct: 240 AQIVAEVLGLRPEIRLVPSTPDG 262
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 16 LLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHE--------FLTLHAHSVKAIFSSAG 67
L R P+ +LG+ + A E+ L + FL L+ +V A+
Sbjct: 184 LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDI 243
Query: 68 APVTAEILRLLPEVRLVVATSAG 90
A + AE+L L PE+RLV +T G
Sbjct: 244 AQIVAEVLGLRPEIRLVPSTPDG 266
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLG------------GKRVGIVGLGSIGSEVAKRL 177
++LSA + G PI P G++LG KRV I+G G IG E+A L
Sbjct: 127 QRLSADHIVIATGGRPIVPRLP-GAELGITSDGFFALQQQPKRVAIIGAGYIGIELAGLL 185
Query: 178 EAFGCCVS 185
+FG V+
Sbjct: 186 RSFGSEVT 193
>pdb|4AY8|A Chain A, Semet-Derivative Of A Methyltransferase From M. Mazei
pdb|4AY8|B Chain B, Semet-Derivative Of A Methyltransferase From M. Mazei
Length = 348
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 177 LEAFGCCVSYNSRNKKPSVTYPFYPDVCELAA 208
+EA GC ++ ++N++PSVT YP E AA
Sbjct: 88 VEAXGCEINXGTKNRQPSVTGHPYPKDLEGAA 119
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDV 305
R AI E ++G LL GE+G L +F+N+ P ++ + P + P+ K +
Sbjct: 439 REAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKHL 498
Query: 306 CELAVANLEAF 316
+ + E F
Sbjct: 499 KDFPILPGEIF 509
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 113 FSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKL 156
F+E + Y L L+++ ++ + + ++ + PIN EFP GSK+
Sbjct: 866 FNETIEYYPLQLIVEDVK--NKDERYIEKEPLPINKEFPKGSKV 907
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDV 305
R AI E ++G LL GE+G L +F+N+ P ++ + P + P+ K +
Sbjct: 440 REAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKHL 499
Query: 306 CELAVANLEAF 316
+ + E F
Sbjct: 500 KDFPILPGEIF 510
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 232 LLALGKKGVIINVG------RGAIIDEKEMVGCLLRGEIGGA---GLDVFENEPDVPEQL 282
+ A G + ++N G R +I D + ++ +L G + A L +F +P +L
Sbjct: 429 MQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLA--IPTEL 486
Query: 283 FALDNVVLSPHSAVFTPESFKDVCE 307
+D +L P + +PE +++ E
Sbjct: 487 PGVDTKILDPRNTYASPEQWQEKAE 511
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 232 LLALGKKGVIINVG------RGAIIDEKEMVGCLLRGEIGGA---GLDVFENEPDVPEQL 282
+ A G + ++N G R +I D + ++ +L G + A L +F +P +L
Sbjct: 429 MQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLA--IPTEL 486
Query: 283 FALDNVVLSPHSAVFTPESFKDVCE 307
+D +L P + +PE +++ E
Sbjct: 487 PGVDTKILDPRNTYASPEQWQEKAE 511
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 232 LLALGKKGVIINVG------RGAIIDEKEMVGCLLRGEIGGA---GLDVFENEPDVPEQL 282
+ A G + ++N G R +I D + ++ +L G + A L +F +P +L
Sbjct: 429 MQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLA--IPTEL 486
Query: 283 FALDNVVLSPHSAVFTPESFKDVCE 307
+D +L P + +PE +++ E
Sbjct: 487 PGVDTKILDPRNTYASPEQWQEKAE 511
>pdb|2YJZ|A Chain A, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
pdb|2YJZ|B Chain B, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
pdb|2YJZ|C Chain C, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
pdb|2YJZ|D Chain D, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
Length = 201
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 149 EFPLGSKLGGKR--VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDV--- 203
EFPL K+ V I G G G + ++ G V + SRN + S P +V
Sbjct: 8 EFPLTVDSSEKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCY 67
Query: 204 CELAANSDVLII 215
E A+ SDV+++
Sbjct: 68 SEAASRSDVIVL 79
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
+++GI+GLG++G+ VA L A G Y
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDY 29
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK 191
G +VG+ G G +GS K A G VS +RN+
Sbjct: 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNE 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,770,415
Number of Sequences: 62578
Number of extensions: 394159
Number of successful extensions: 1233
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 86
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)