Query 020160
Match_columns 330
No_of_seqs 283 out of 2004
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15409 bifunctional glyoxyla 100.0 1.5E-74 3.2E-79 549.0 35.3 313 10-328 1-320 (323)
2 COG0111 SerA Phosphoglycerate 100.0 1.1E-74 2.4E-79 548.4 32.7 307 10-324 2-313 (324)
3 COG1052 LdhA Lactate dehydroge 100.0 2.9E-74 6.3E-79 545.2 33.0 313 10-328 1-323 (324)
4 PRK13243 glyoxylate reductase; 100.0 5.4E-72 1.2E-76 534.3 35.2 314 10-328 1-323 (333)
5 PRK08410 2-hydroxyacid dehydro 100.0 1.8E-71 3.9E-76 526.1 35.0 302 13-321 2-311 (311)
6 PRK06487 glycerate dehydrogena 100.0 1.5E-70 3.2E-75 521.1 35.9 306 13-326 2-316 (317)
7 PRK11790 D-3-phosphoglycerate 100.0 2.7E-70 5.8E-75 535.0 35.1 315 6-328 5-327 (409)
8 PLN02306 hydroxypyruvate reduc 100.0 1.1E-69 2.3E-74 525.4 35.2 316 8-327 12-354 (386)
9 PLN02928 oxidoreductase family 100.0 1.1E-69 2.5E-74 520.5 34.0 312 2-325 10-343 (347)
10 PRK06932 glycerate dehydrogena 100.0 3.4E-69 7.3E-74 511.0 33.9 269 51-321 37-314 (314)
11 PRK07574 formate dehydrogenase 100.0 3.4E-69 7.3E-74 521.0 32.7 298 32-330 64-370 (385)
12 PLN03139 formate dehydrogenase 100.0 1.5E-68 3.3E-73 516.1 35.4 293 32-325 71-372 (386)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 9.5E-68 2.1E-72 532.3 33.7 307 13-328 1-312 (525)
14 PRK13581 D-3-phosphoglycerate 100.0 6.8E-67 1.5E-71 526.2 33.3 306 13-328 2-313 (526)
15 KOG0068 D-3-phosphoglycerate d 100.0 1.8E-67 3.9E-72 484.5 25.2 309 7-327 3-320 (406)
16 PRK12480 D-lactate dehydrogena 100.0 2.6E-65 5.7E-70 487.2 30.3 274 53-327 40-330 (330)
17 PRK08605 D-lactate dehydrogena 100.0 4.7E-65 1E-69 486.5 30.8 312 9-327 1-332 (332)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 1.4E-62 2.9E-67 461.4 25.9 268 60-327 63-335 (336)
19 PRK15438 erythronate-4-phospha 100.0 9.5E-61 2.1E-65 460.4 33.1 276 13-321 2-281 (378)
20 PRK06436 glycerate dehydrogena 100.0 7.7E-61 1.7E-65 450.9 31.8 256 57-328 33-290 (303)
21 PRK15469 ghrA bifunctional gly 100.0 3.1E-61 6.7E-66 455.8 28.8 262 57-328 37-308 (312)
22 PRK00257 erythronate-4-phospha 100.0 4.5E-60 9.7E-65 456.9 33.3 278 13-322 2-283 (381)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 7.9E-49 1.7E-53 343.6 13.5 173 122-295 1-178 (178)
24 KOG0067 Transcription factor C 100.0 5.5E-33 1.2E-37 259.0 12.0 259 56-321 71-340 (435)
25 PF00389 2-Hacid_dh: D-isomer 99.9 2.2E-22 4.7E-27 167.9 13.2 101 14-121 1-101 (133)
26 PTZ00075 Adenosylhomocysteinas 99.9 3.1E-21 6.7E-26 189.7 17.1 167 85-279 196-368 (476)
27 TIGR02853 spore_dpaA dipicolin 99.8 2E-20 4.4E-25 175.4 11.0 162 56-248 52-243 (287)
28 PRK08306 dipicolinate synthase 99.7 3.8E-15 8.2E-20 140.5 16.5 163 54-246 51-242 (296)
29 PLN02494 adenosylhomocysteinas 99.6 7.9E-16 1.7E-20 151.3 10.1 116 155-276 251-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.5 4E-14 8.6E-19 138.1 10.2 115 155-274 192-312 (406)
31 PRK13403 ketol-acid reductoiso 99.5 4.6E-14 1E-18 132.8 8.2 88 154-243 12-104 (335)
32 COG2084 MmsB 3-hydroxyisobutyr 99.4 8E-13 1.7E-17 123.1 9.6 116 159-276 1-126 (286)
33 PF03446 NAD_binding_2: NAD bi 99.4 1.9E-13 4.1E-18 117.9 4.3 111 159-271 2-118 (163)
34 PRK05476 S-adenosyl-L-homocyst 99.4 2.7E-12 5.8E-17 126.0 9.9 178 58-257 123-312 (425)
35 TIGR01505 tartro_sem_red 2-hyd 99.3 7E-12 1.5E-16 117.8 8.8 106 160-265 1-113 (291)
36 PRK11559 garR tartronate semia 99.3 7.5E-12 1.6E-16 117.8 8.4 118 159-276 3-127 (296)
37 PRK12490 6-phosphogluconate de 99.3 2.2E-11 4.8E-16 115.1 9.7 109 159-270 1-117 (299)
38 PRK15461 NADH-dependent gamma- 99.2 2.1E-11 4.5E-16 115.1 9.1 111 159-271 2-119 (296)
39 PRK05479 ketol-acid reductoiso 99.2 7.1E-11 1.5E-15 112.5 9.6 116 154-280 13-134 (330)
40 PF00670 AdoHcyase_NAD: S-aden 99.2 4.6E-11 9.9E-16 102.2 6.7 99 154-257 19-123 (162)
41 PRK09599 6-phosphogluconate de 99.2 9.9E-11 2.2E-15 110.7 9.7 110 159-271 1-118 (301)
42 PLN02350 phosphogluconate dehy 99.1 1.1E-10 2.4E-15 116.8 9.2 117 159-276 7-138 (493)
43 PRK15059 tartronate semialdehy 99.1 3.1E-10 6.6E-15 107.0 8.7 111 159-271 1-117 (292)
44 PLN02256 arogenate dehydrogena 99.1 1.1E-09 2.3E-14 103.8 11.9 132 156-294 34-174 (304)
45 PLN02712 arogenate dehydrogena 99.1 2.7E-10 5.8E-15 118.3 7.9 108 153-261 364-476 (667)
46 PTZ00142 6-phosphogluconate de 99.0 1E-09 2.3E-14 109.6 9.4 117 159-276 2-132 (470)
47 TIGR00872 gnd_rel 6-phosphoglu 99.0 1.6E-09 3.5E-14 102.3 9.9 109 159-271 1-117 (298)
48 cd00401 AdoHcyase S-adenosyl-L 99.0 1.5E-09 3.2E-14 106.5 9.5 99 154-257 198-302 (413)
49 PLN02858 fructose-bisphosphate 99.0 1.6E-09 3.5E-14 120.2 9.8 115 157-271 3-124 (1378)
50 KOG0409 Predicted dehydrogenas 98.9 2.5E-09 5.3E-14 99.0 8.1 114 155-270 32-153 (327)
51 PRK08655 prephenate dehydrogen 98.9 6.1E-09 1.3E-13 103.4 11.5 136 159-303 1-145 (437)
52 PLN02858 fructose-bisphosphate 98.9 2.4E-09 5.1E-14 118.9 9.2 112 157-270 323-443 (1378)
53 TIGR01692 HIBADH 3-hydroxyisob 98.9 2.1E-09 4.6E-14 101.0 7.4 106 163-270 1-113 (288)
54 PRK07417 arogenate dehydrogena 98.9 7.2E-09 1.6E-13 97.0 9.7 137 159-302 1-148 (279)
55 PLN02545 3-hydroxybutyryl-CoA 98.9 1E-08 2.3E-13 96.5 10.7 100 159-261 5-133 (295)
56 PRK14619 NAD(P)H-dependent gly 98.9 6.7E-09 1.5E-13 98.5 9.0 83 157-249 3-86 (308)
57 TIGR00873 gnd 6-phosphoglucona 98.9 4.6E-09 1E-13 104.9 8.2 115 160-275 1-128 (467)
58 PLN02712 arogenate dehydrogena 98.8 1.5E-08 3.2E-13 105.4 10.7 103 156-259 50-157 (667)
59 PRK07502 cyclohexadienyl dehyd 98.8 2.1E-08 4.6E-13 95.0 10.7 141 157-303 5-161 (307)
60 TIGR00465 ilvC ketol-acid redu 98.8 1.4E-08 3E-13 96.6 8.3 92 156-250 1-98 (314)
61 PRK15182 Vi polysaccharide bio 98.8 1.6E-08 3.4E-13 100.2 8.8 131 159-290 7-173 (425)
62 PRK06545 prephenate dehydrogen 98.8 3.6E-08 7.9E-13 95.6 10.9 136 159-303 1-156 (359)
63 PRK11199 tyrA bifunctional cho 98.8 8.6E-08 1.9E-12 93.5 13.5 90 157-257 97-187 (374)
64 PRK08818 prephenate dehydrogen 98.8 1.2E-07 2.7E-12 91.9 14.2 121 156-293 2-130 (370)
65 COG0287 TyrA Prephenate dehydr 98.8 5.4E-08 1.2E-12 91.0 11.2 139 158-305 3-155 (279)
66 PRK11064 wecC UDP-N-acetyl-D-m 98.8 5.5E-08 1.2E-12 96.1 11.2 143 159-306 4-189 (415)
67 PRK09260 3-hydroxybutyryl-CoA 98.7 3.4E-08 7.3E-13 92.8 8.7 110 159-272 2-141 (288)
68 PRK14194 bifunctional 5,10-met 98.7 4.4E-08 9.6E-13 92.1 9.3 80 153-248 154-234 (301)
69 PRK05225 ketol-acid reductoiso 98.7 1.8E-08 3.9E-13 98.8 6.3 96 143-242 21-128 (487)
70 PLN02688 pyrroline-5-carboxyla 98.7 1.1E-07 2.4E-12 88.0 11.4 99 159-261 1-109 (266)
71 PRK08507 prephenate dehydrogen 98.7 1.3E-07 2.8E-12 88.3 11.2 127 159-294 1-142 (275)
72 PRK08293 3-hydroxybutyryl-CoA 98.7 2.8E-07 6.1E-12 86.6 12.4 137 159-306 4-170 (287)
73 PRK07066 3-hydroxybutyryl-CoA 98.7 1.6E-07 3.5E-12 89.6 10.8 101 159-261 8-133 (321)
74 TIGR03026 NDP-sugDHase nucleot 98.7 1.9E-07 4.2E-12 92.1 11.6 131 159-291 1-174 (411)
75 TIGR00518 alaDH alanine dehydr 98.7 4.5E-08 9.8E-13 95.3 7.0 91 155-245 164-267 (370)
76 PF07991 IlvN: Acetohydroxy ac 98.7 2.5E-08 5.4E-13 85.2 4.5 86 156-243 2-93 (165)
77 PF03807 F420_oxidored: NADP o 98.6 1.7E-08 3.7E-13 78.8 2.9 85 160-247 1-96 (96)
78 PRK07530 3-hydroxybutyryl-CoA 98.6 1.9E-07 4.1E-12 87.9 10.3 109 159-273 5-144 (292)
79 COG0499 SAM1 S-adenosylhomocys 98.6 8.4E-08 1.8E-12 90.8 7.5 106 155-265 206-318 (420)
80 COG1023 Gnd Predicted 6-phosph 98.6 1.5E-07 3.3E-12 84.7 8.4 112 159-273 1-120 (300)
81 PRK14189 bifunctional 5,10-met 98.6 1.7E-07 3.7E-12 87.5 9.2 81 153-249 153-234 (285)
82 PRK05808 3-hydroxybutyryl-CoA 98.6 4.7E-07 1E-11 84.8 11.4 99 159-260 4-131 (282)
83 cd01080 NAD_bind_m-THF_DH_Cycl 98.6 3E-07 6.6E-12 79.7 9.1 113 154-299 40-153 (168)
84 PRK14188 bifunctional 5,10-met 98.6 3E-07 6.5E-12 86.5 9.3 79 154-249 154-234 (296)
85 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 3.1E-07 6.6E-12 82.0 8.9 105 153-265 23-134 (200)
86 cd01065 NAD_bind_Shikimate_DH 98.5 3E-07 6.4E-12 77.9 8.3 105 155-264 16-133 (155)
87 PRK07679 pyrroline-5-carboxyla 98.5 3.8E-07 8.2E-12 85.3 9.6 100 157-260 2-112 (279)
88 PRK06035 3-hydroxyacyl-CoA deh 98.5 7.7E-07 1.7E-11 83.7 11.3 112 159-275 4-148 (291)
89 PRK14618 NAD(P)H-dependent gly 98.5 3.5E-07 7.5E-12 87.5 8.7 98 158-261 4-123 (328)
90 PRK12491 pyrroline-5-carboxyla 98.5 2E-07 4.3E-12 87.1 6.3 99 158-260 2-110 (272)
91 PRK07531 bifunctional 3-hydrox 98.5 4.9E-07 1.1E-11 91.3 9.3 112 159-274 5-141 (495)
92 PRK13302 putative L-aspartate 98.5 3.6E-07 7.9E-12 85.3 7.6 104 157-265 5-118 (271)
93 PRK06129 3-hydroxyacyl-CoA deh 98.5 1.2E-06 2.5E-11 83.2 11.1 136 159-305 3-167 (308)
94 PRK07819 3-hydroxybutyryl-CoA 98.5 5.4E-07 1.2E-11 84.8 8.3 112 159-275 6-148 (286)
95 PRK08268 3-hydroxy-acyl-CoA de 98.4 8.8E-07 1.9E-11 89.7 10.1 112 159-276 8-150 (507)
96 PRK14806 bifunctional cyclohex 98.4 8.8E-07 1.9E-11 93.5 10.4 137 159-303 4-159 (735)
97 PRK06130 3-hydroxybutyryl-CoA 98.4 6.7E-07 1.4E-11 84.8 8.3 99 159-260 5-128 (311)
98 PRK14179 bifunctional 5,10-met 98.4 9.2E-07 2E-11 82.7 8.7 80 153-248 153-233 (284)
99 PRK00094 gpsA NAD(P)H-dependen 98.4 3.5E-07 7.6E-12 86.8 5.8 90 159-250 2-110 (325)
100 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 8E-07 1.7E-11 89.8 8.6 114 159-277 6-149 (503)
101 PRK15057 UDP-glucose 6-dehydro 98.4 2.7E-06 5.8E-11 83.4 11.1 124 159-290 1-160 (388)
102 PF10727 Rossmann-like: Rossma 98.4 1.5E-07 3.2E-12 77.9 1.9 104 157-264 9-121 (127)
103 PRK05472 redox-sensing transcr 98.4 2.6E-07 5.6E-12 83.2 3.5 128 114-261 60-201 (213)
104 TIGR01724 hmd_rel H2-forming N 98.3 1.8E-06 4E-11 81.4 8.7 88 170-261 32-129 (341)
105 PRK14175 bifunctional 5,10-met 98.3 2.3E-06 5.1E-11 80.1 9.2 80 153-248 153-233 (286)
106 PF01210 NAD_Gly3P_dh_N: NAD-d 98.3 6.8E-07 1.5E-11 76.6 4.7 87 160-248 1-106 (157)
107 PRK06476 pyrroline-5-carboxyla 98.3 1.2E-06 2.7E-11 80.8 6.6 98 159-262 1-108 (258)
108 COG2085 Predicted dinucleotide 98.3 2.7E-06 5.9E-11 75.7 8.0 86 159-247 2-95 (211)
109 PF01488 Shikimate_DH: Shikima 98.3 3.8E-07 8.3E-12 76.2 2.5 93 155-250 9-114 (135)
110 KOG1370 S-adenosylhomocysteine 98.3 1.5E-06 3.2E-11 80.8 6.4 89 156-249 212-305 (434)
111 PRK07680 late competence prote 98.3 1.7E-06 3.7E-11 80.6 6.8 98 159-260 1-109 (273)
112 PRK06928 pyrroline-5-carboxyla 98.2 4.4E-06 9.6E-11 78.1 9.1 98 159-260 2-111 (277)
113 TIGR00561 pntA NAD(P) transhyd 98.2 1.2E-05 2.7E-10 80.9 12.7 177 58-246 64-285 (511)
114 cd05191 NAD_bind_amino_acid_DH 98.2 9.9E-06 2.2E-10 62.2 9.0 66 155-245 20-86 (86)
115 PRK09287 6-phosphogluconate de 98.2 2.5E-06 5.4E-11 85.2 6.9 107 169-276 1-120 (459)
116 KOG2380 Prephenate dehydrogena 98.2 1.2E-05 2.6E-10 75.9 10.4 135 158-295 52-192 (480)
117 PF03721 UDPG_MGDP_dh_N: UDP-g 98.1 5.2E-06 1.1E-10 73.2 6.5 132 159-290 1-171 (185)
118 cd05212 NAD_bind_m-THF_DH_Cycl 98.1 4.2E-05 9.2E-10 64.4 11.3 80 153-248 23-103 (140)
119 PRK14192 bifunctional 5,10-met 98.1 1.5E-05 3.3E-10 74.8 9.4 80 153-248 154-234 (283)
120 PF02882 THF_DHG_CYH_C: Tetrah 98.1 2.1E-05 4.7E-10 67.6 9.2 81 153-249 31-112 (160)
121 PRK10792 bifunctional 5,10-met 98.1 2.4E-05 5.1E-10 73.2 10.2 80 153-248 154-234 (285)
122 PRK11880 pyrroline-5-carboxyla 98.1 7.6E-06 1.6E-10 75.8 6.4 96 159-260 3-107 (267)
123 PRK14178 bifunctional 5,10-met 98.1 1.4E-05 3.1E-10 74.5 8.2 80 153-248 147-227 (279)
124 PRK14176 bifunctional 5,10-met 98.0 2.4E-05 5.1E-10 73.3 9.3 79 153-247 159-238 (287)
125 PF01262 AlaDh_PNT_C: Alanine 98.0 4.8E-06 1E-10 72.1 3.7 92 154-245 16-139 (168)
126 PRK14191 bifunctional 5,10-met 98.0 2.6E-05 5.6E-10 73.0 8.8 80 153-248 152-232 (285)
127 TIGR01915 npdG NADPH-dependent 98.0 7.4E-06 1.6E-10 73.9 5.0 88 159-249 1-105 (219)
128 PRK13304 L-aspartate dehydroge 98.0 1.2E-05 2.6E-10 74.8 6.4 101 159-264 2-114 (265)
129 PTZ00431 pyrroline carboxylate 98.0 2.2E-05 4.9E-10 72.7 8.2 124 157-293 2-129 (260)
130 TIGR01035 hemA glutamyl-tRNA r 98.0 8.2E-06 1.8E-10 80.8 5.6 94 155-251 177-283 (417)
131 COG0677 WecC UDP-N-acetyl-D-ma 98.0 7.8E-05 1.7E-09 72.0 11.5 139 159-305 10-191 (436)
132 PRK07634 pyrroline-5-carboxyla 97.9 2.8E-05 6.1E-10 71.0 7.9 101 157-262 3-114 (245)
133 COG0362 Gnd 6-phosphogluconate 97.9 0.00027 5.8E-09 68.2 14.5 156 158-324 3-171 (473)
134 PRK08229 2-dehydropantoate 2-r 97.9 2.8E-05 6.1E-10 74.5 7.9 103 159-265 3-126 (341)
135 COG0059 IlvC Ketol-acid reduct 97.9 2.1E-05 4.6E-10 73.3 6.3 85 155-241 15-105 (338)
136 cd01079 NAD_bind_m-THF_DH NAD 97.9 0.00014 3.1E-09 64.2 11.1 89 151-246 55-157 (197)
137 PLN00203 glutamyl-tRNA reducta 97.9 1.4E-05 3.1E-10 80.9 5.3 90 155-247 263-371 (519)
138 PRK06522 2-dehydropantoate 2-r 97.9 7.1E-05 1.5E-09 70.3 9.8 104 159-266 1-120 (304)
139 PRK09424 pntA NAD(P) transhydr 97.9 8.3E-05 1.8E-09 75.1 10.8 178 58-246 65-286 (509)
140 cd05213 NAD_bind_Glutamyl_tRNA 97.9 1.7E-05 3.8E-10 75.4 5.6 90 156-247 176-275 (311)
141 cd05311 NAD_bind_2_malic_enz N 97.9 7.3E-05 1.6E-09 68.0 9.3 149 154-318 21-196 (226)
142 PF02737 3HCDH_N: 3-hydroxyacy 97.8 1.1E-05 2.4E-10 70.8 3.1 109 160-273 1-139 (180)
143 COG0240 GpsA Glycerol-3-phosph 97.8 4E-05 8.8E-10 72.7 7.0 91 159-251 2-111 (329)
144 PRK14183 bifunctional 5,10-met 97.8 0.00011 2.5E-09 68.5 9.6 80 153-248 152-232 (281)
145 COG0345 ProC Pyrroline-5-carbo 97.8 5.3E-05 1.1E-09 70.3 7.3 94 159-260 2-108 (266)
146 PRK00045 hemA glutamyl-tRNA re 97.8 2.8E-05 6.1E-10 77.1 5.8 89 155-246 179-281 (423)
147 PRK12921 2-dehydropantoate 2-r 97.8 5.6E-05 1.2E-09 71.1 7.5 103 159-265 1-121 (305)
148 COG0686 Ald Alanine dehydrogen 97.8 3.3E-05 7.1E-10 72.3 5.1 89 156-245 166-268 (371)
149 PRK14190 bifunctional 5,10-met 97.7 0.00023 5.1E-09 66.6 10.3 111 153-299 153-264 (284)
150 COG0190 FolD 5,10-methylene-te 97.7 0.00016 3.5E-09 67.2 8.4 113 153-301 151-264 (283)
151 PRK12557 H(2)-dependent methyl 97.7 8.4E-05 1.8E-09 71.7 6.8 90 170-260 32-132 (342)
152 PRK06141 ornithine cyclodeamin 97.7 0.00016 3.4E-09 69.0 8.6 84 157-246 124-220 (314)
153 PRK14170 bifunctional 5,10-met 97.7 0.00041 8.9E-09 64.9 11.1 80 153-248 152-232 (284)
154 PRK14171 bifunctional 5,10-met 97.7 0.00041 8.9E-09 65.1 10.9 79 153-247 154-233 (288)
155 TIGR03376 glycerol3P_DH glycer 97.7 0.00014 3.1E-09 70.1 8.0 89 160-250 1-121 (342)
156 PLN02353 probable UDP-glucose 97.7 0.00084 1.8E-08 67.5 13.6 131 159-290 2-176 (473)
157 TIGR01546 GAPDH-II_archae glyc 97.6 0.00014 3E-09 69.7 7.6 83 161-246 1-109 (333)
158 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.00011 2.5E-09 64.8 6.4 94 153-250 23-134 (194)
159 PRK14177 bifunctional 5,10-met 97.6 0.00035 7.6E-09 65.4 9.9 80 153-248 154-234 (284)
160 PRK14186 bifunctional 5,10-met 97.6 0.00036 7.7E-09 65.8 9.8 116 153-300 153-269 (297)
161 PRK14169 bifunctional 5,10-met 97.6 0.00036 7.8E-09 65.3 9.8 111 153-299 151-262 (282)
162 PRK14172 bifunctional 5,10-met 97.6 0.00055 1.2E-08 63.9 11.0 110 153-299 153-263 (278)
163 PRK06249 2-dehydropantoate 2-r 97.6 0.00075 1.6E-08 64.2 12.1 108 158-269 5-129 (313)
164 PRK14173 bifunctional 5,10-met 97.6 0.0004 8.6E-09 65.2 9.9 81 153-249 150-231 (287)
165 PRK00258 aroE shikimate 5-dehy 97.6 0.00015 3.1E-09 68.0 7.0 92 155-246 120-222 (278)
166 PRK14166 bifunctional 5,10-met 97.6 0.00039 8.4E-09 65.0 9.7 80 153-248 152-232 (282)
167 PLN02516 methylenetetrahydrofo 97.6 0.00042 9.1E-09 65.3 9.7 80 153-248 162-242 (299)
168 PRK00676 hemA glutamyl-tRNA re 97.6 0.00029 6.2E-09 67.6 8.7 89 155-248 171-264 (338)
169 PRK14180 bifunctional 5,10-met 97.6 0.00047 1E-08 64.5 9.7 79 153-247 153-232 (282)
170 TIGR02354 thiF_fam2 thiamine b 97.6 0.00031 6.7E-09 62.7 8.0 90 154-244 17-144 (200)
171 PRK14193 bifunctional 5,10-met 97.5 0.00054 1.2E-08 64.2 9.8 110 153-299 153-265 (284)
172 TIGR00507 aroE shikimate 5-deh 97.5 0.00031 6.7E-09 65.4 8.2 104 156-264 115-231 (270)
173 PTZ00345 glycerol-3-phosphate 97.5 0.00024 5.2E-09 69.1 7.7 92 158-251 11-135 (365)
174 PRK14187 bifunctional 5,10-met 97.5 0.00053 1.1E-08 64.5 9.7 80 153-248 155-235 (294)
175 PRK06444 prephenate dehydrogen 97.5 0.00027 5.9E-09 62.9 7.3 62 159-249 1-63 (197)
176 PF13380 CoA_binding_2: CoA bi 97.5 0.00021 4.7E-09 58.1 6.1 100 159-265 1-104 (116)
177 PLN02616 tetrahydrofolate dehy 97.5 0.00053 1.1E-08 66.0 9.5 80 153-248 226-306 (364)
178 PRK14182 bifunctional 5,10-met 97.5 0.00067 1.4E-08 63.5 9.8 80 153-248 152-232 (282)
179 PRK14174 bifunctional 5,10-met 97.5 0.00049 1.1E-08 64.9 9.0 80 153-248 154-238 (295)
180 PLN02897 tetrahydrofolate dehy 97.5 0.00056 1.2E-08 65.5 9.4 80 153-248 209-289 (345)
181 PRK14181 bifunctional 5,10-met 97.5 0.00074 1.6E-08 63.3 9.8 80 153-248 148-232 (287)
182 TIGR02371 ala_DH_arch alanine 97.5 0.00036 7.9E-09 66.8 7.8 84 158-247 128-224 (325)
183 PRK14982 acyl-ACP reductase; P 97.5 0.00035 7.5E-09 67.2 7.5 95 152-252 149-253 (340)
184 PRK07340 ornithine cyclodeamin 97.5 0.00029 6.2E-09 66.9 6.8 84 157-247 124-219 (304)
185 PRK14184 bifunctional 5,10-met 97.4 0.00056 1.2E-08 64.2 8.5 79 153-247 152-235 (286)
186 PRK14620 NAD(P)H-dependent gly 97.4 0.00048 1E-08 65.8 8.1 88 159-248 1-109 (326)
187 PF02153 PDH: Prephenate dehyd 97.4 0.00049 1.1E-08 63.7 7.9 120 173-295 1-133 (258)
188 COG0373 HemA Glutamyl-tRNA red 97.4 0.0003 6.4E-09 69.1 6.3 91 155-248 175-277 (414)
189 PRK12439 NAD(P)H-dependent gly 97.4 0.00043 9.3E-09 66.7 7.4 87 159-248 8-114 (341)
190 PRK14168 bifunctional 5,10-met 97.4 0.0011 2.4E-08 62.5 9.6 80 153-248 156-240 (297)
191 PRK13940 glutamyl-tRNA reducta 97.4 0.0005 1.1E-08 68.0 7.4 86 155-245 178-273 (414)
192 PRK14185 bifunctional 5,10-met 97.4 0.0012 2.6E-08 62.0 9.6 80 153-248 152-236 (293)
193 COG1250 FadB 3-hydroxyacyl-CoA 97.3 0.0014 3.1E-08 62.1 9.7 113 158-275 3-145 (307)
194 PRK14167 bifunctional 5,10-met 97.3 0.0014 3E-08 61.9 9.4 80 153-248 152-236 (297)
195 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0025 5.5E-08 57.6 10.4 103 154-264 19-144 (217)
196 PRK11730 fadB multifunctional 97.3 0.0011 2.4E-08 70.0 9.3 112 159-274 314-454 (715)
197 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.0032 7E-08 57.3 11.0 104 154-265 27-154 (227)
198 PRK08618 ornithine cyclodeamin 97.2 0.00061 1.3E-08 65.3 6.5 83 157-246 126-222 (325)
199 COG1064 AdhP Zn-dependent alco 97.2 0.00064 1.4E-08 65.1 6.5 83 157-245 166-259 (339)
200 cd05313 NAD_bind_2_Glu_DH NAD( 97.2 0.0013 2.8E-08 60.8 8.1 105 154-265 34-172 (254)
201 PF13241 NAD_binding_7: Putati 97.2 0.00011 2.3E-09 58.5 0.9 85 155-245 4-91 (103)
202 KOG2653 6-phosphogluconate deh 97.2 0.0042 9E-08 59.4 11.4 154 159-322 7-173 (487)
203 TIGR02992 ectoine_eutC ectoine 97.2 0.00092 2E-08 64.1 7.1 84 157-246 128-225 (326)
204 KOG0023 Alcohol dehydrogenase, 97.2 0.00059 1.3E-08 64.3 5.5 36 157-192 181-216 (360)
205 smart00859 Semialdhyde_dh Semi 97.2 0.0012 2.6E-08 53.7 6.6 85 160-246 1-100 (122)
206 PRK12549 shikimate 5-dehydroge 97.2 0.00076 1.7E-08 63.4 6.1 65 156-220 125-203 (284)
207 COG1748 LYS9 Saccharopine dehy 97.1 0.0011 2.4E-08 64.6 7.3 84 159-248 2-102 (389)
208 PRK06046 alanine dehydrogenase 97.1 0.001 2.2E-08 63.7 6.6 82 158-246 129-224 (326)
209 PTZ00117 malate dehydrogenase; 97.1 0.0017 3.8E-08 62.0 8.1 114 156-270 3-151 (319)
210 TIGR01470 cysG_Nterm siroheme 97.1 0.00066 1.4E-08 60.8 4.8 88 151-244 2-99 (205)
211 PF02423 OCD_Mu_crystall: Orni 97.1 0.0011 2.4E-08 63.2 6.5 87 159-249 129-228 (313)
212 TIGR01921 DAP-DH diaminopimela 97.1 0.0017 3.6E-08 62.0 7.6 102 159-265 4-115 (324)
213 TIGR02441 fa_ox_alpha_mit fatt 97.1 0.0016 3.5E-08 68.9 8.2 111 159-274 336-476 (737)
214 TIGR02440 FadJ fatty oxidation 97.1 0.0026 5.7E-08 67.1 9.5 111 159-274 305-446 (699)
215 PLN02477 glutamate dehydrogena 97.0 0.011 2.5E-07 58.2 13.2 105 153-265 201-329 (410)
216 COG1004 Ugd Predicted UDP-gluc 97.0 0.011 2.4E-07 57.5 12.7 148 159-311 1-186 (414)
217 PF01113 DapB_N: Dihydrodipico 97.0 0.0012 2.6E-08 54.2 5.3 59 159-217 1-75 (124)
218 TIGR01763 MalateDH_bact malate 97.0 0.0013 2.8E-08 62.5 6.2 111 159-270 2-147 (305)
219 PRK13301 putative L-aspartate 97.0 0.0026 5.7E-08 58.9 8.0 99 159-262 3-113 (267)
220 PRK11154 fadJ multifunctional 97.0 0.0027 5.7E-08 67.1 9.0 110 159-273 310-450 (708)
221 PRK09310 aroDE bifunctional 3- 97.0 0.001 2.2E-08 67.1 5.5 69 153-221 327-402 (477)
222 PF01408 GFO_IDH_MocA: Oxidore 97.0 0.00063 1.4E-08 54.8 3.3 100 160-264 2-114 (120)
223 TIGR02437 FadB fatty oxidation 97.0 0.0029 6.2E-08 66.9 8.9 110 159-273 314-453 (714)
224 PRK08291 ectoine utilization p 96.9 0.0015 3.2E-08 62.8 5.8 83 157-245 131-227 (330)
225 PRK13303 L-aspartate dehydroge 96.9 0.002 4.2E-08 60.0 6.3 101 159-264 2-114 (265)
226 PRK08306 dipicolinate synthase 96.9 0.011 2.5E-07 55.8 11.6 104 157-265 1-116 (296)
227 PRK06823 ornithine cyclodeamin 96.9 0.0033 7.1E-08 60.0 7.9 83 158-246 128-223 (315)
228 COG0026 PurK Phosphoribosylami 96.9 0.0021 4.6E-08 61.8 6.5 58 158-215 1-68 (375)
229 COG1712 Predicted dinucleotide 96.9 0.0028 6.1E-08 57.0 6.7 91 159-254 1-100 (255)
230 PRK06199 ornithine cyclodeamin 96.8 0.0029 6.4E-08 61.9 6.8 87 158-247 155-261 (379)
231 PRK14031 glutamate dehydrogena 96.8 0.011 2.3E-07 58.9 10.7 105 153-264 223-360 (444)
232 COG2423 Predicted ornithine cy 96.8 0.0037 7.9E-08 60.0 7.1 83 158-246 130-226 (330)
233 TIGR02356 adenyl_thiF thiazole 96.8 0.0027 5.8E-08 56.7 5.8 37 154-190 17-54 (202)
234 cd00650 LDH_MDH_like NAD-depen 96.8 0.0025 5.4E-08 59.1 5.7 110 161-272 1-149 (263)
235 PRK06718 precorrin-2 dehydroge 96.7 0.038 8.2E-07 49.4 13.0 41 151-191 3-43 (202)
236 PRK09414 glutamate dehydrogena 96.7 0.0066 1.4E-07 60.5 8.9 106 153-265 227-362 (445)
237 cd05291 HicDH_like L-2-hydroxy 96.7 0.006 1.3E-07 57.9 8.1 92 159-252 1-122 (306)
238 PRK06719 precorrin-2 dehydroge 96.7 0.0027 5.8E-08 54.5 4.9 41 150-190 5-45 (157)
239 PRK06407 ornithine cyclodeamin 96.6 0.0066 1.4E-07 57.6 7.8 83 158-246 117-213 (301)
240 PRK12548 shikimate 5-dehydroge 96.6 0.0067 1.5E-07 57.1 7.8 36 156-191 124-160 (289)
241 PRK00066 ldh L-lactate dehydro 96.6 0.007 1.5E-07 57.8 8.0 89 157-245 5-122 (315)
242 PRK07589 ornithine cyclodeamin 96.6 0.0065 1.4E-07 58.7 7.6 85 158-246 129-226 (346)
243 COG0771 MurD UDP-N-acetylmuram 96.6 0.0075 1.6E-07 60.0 8.1 142 156-298 5-185 (448)
244 PRK00048 dihydrodipicolinate r 96.6 0.012 2.5E-07 54.6 8.8 62 159-220 2-71 (257)
245 PRK00683 murD UDP-N-acetylmura 96.5 0.006 1.3E-07 60.4 7.1 103 158-261 3-126 (418)
246 PF01118 Semialdhyde_dh: Semia 96.5 0.0019 4.1E-08 52.7 3.0 83 160-247 1-99 (121)
247 TIGR01809 Shik-DH-AROM shikima 96.5 0.0031 6.8E-08 59.2 4.5 65 156-220 123-201 (282)
248 PRK06223 malate dehydrogenase; 96.4 0.0091 2E-07 56.5 7.4 58 159-217 3-78 (307)
249 PF00185 OTCace: Aspartate/orn 96.4 0.015 3.4E-07 49.8 8.1 89 157-245 1-120 (158)
250 PTZ00082 L-lactate dehydrogena 96.4 0.0075 1.6E-07 57.7 6.8 61 156-217 4-82 (321)
251 PRK12475 thiamine/molybdopteri 96.4 0.0091 2E-07 57.6 7.1 38 154-191 20-58 (338)
252 PRK01710 murD UDP-N-acetylmura 96.4 0.0075 1.6E-07 60.4 6.8 106 156-262 12-142 (458)
253 TIGR02964 xanthine_xdhC xanthi 96.4 0.018 4E-07 53.0 8.8 88 159-264 101-188 (246)
254 TIGR02717 AcCoA-syn-alpha acet 96.4 0.023 4.9E-07 56.9 10.1 107 156-265 5-123 (447)
255 KOG2304 3-hydroxyacyl-CoA dehy 96.3 0.00098 2.1E-08 60.0 0.2 132 156-296 9-175 (298)
256 PTZ00079 NADP-specific glutama 96.3 0.032 6.9E-07 55.6 10.5 106 153-265 232-371 (454)
257 PRK14030 glutamate dehydrogena 96.3 0.015 3.3E-07 57.8 8.3 106 153-265 223-362 (445)
258 PF02558 ApbA: Ketopantoate re 96.3 0.0023 4.9E-08 53.8 2.1 106 161-269 1-124 (151)
259 cd00757 ThiF_MoeB_HesA_family 96.3 0.0084 1.8E-07 54.4 6.0 147 154-321 17-206 (228)
260 PF00208 ELFV_dehydrog: Glutam 96.3 0.0075 1.6E-07 55.5 5.7 104 155-265 29-165 (244)
261 TIGR01850 argC N-acetyl-gamma- 96.3 0.012 2.7E-07 56.8 7.4 83 159-247 1-101 (346)
262 PRK05708 2-dehydropantoate 2-r 96.3 0.019 4.1E-07 54.5 8.4 108 159-269 3-127 (305)
263 PRK06019 phosphoribosylaminoim 96.2 0.01 2.3E-07 57.8 6.7 58 158-215 2-69 (372)
264 TIGR03026 NDP-sugDHase nucleot 96.2 0.026 5.6E-07 55.8 9.3 87 155-244 310-409 (411)
265 PRK00779 ornithine carbamoyltr 96.2 0.095 2.1E-06 49.8 12.5 90 156-245 150-265 (304)
266 PRK08269 3-hydroxybutyryl-CoA 96.1 0.048 1.1E-06 52.0 10.6 90 169-260 1-128 (314)
267 COG0569 TrkA K+ transport syst 96.1 0.0045 9.7E-08 56.2 3.3 63 159-221 1-78 (225)
268 COG0334 GdhA Glutamate dehydro 96.1 0.022 4.7E-07 55.8 7.9 103 153-263 202-329 (411)
269 PRK04207 glyceraldehyde-3-phos 96.1 0.02 4.3E-07 55.3 7.6 62 159-220 2-89 (341)
270 PRK00856 pyrB aspartate carbam 96.1 0.052 1.1E-06 51.6 10.3 61 156-216 154-220 (305)
271 PRK01713 ornithine carbamoyltr 96.1 0.11 2.3E-06 50.1 12.6 91 155-245 153-275 (334)
272 TIGR02355 moeB molybdopterin s 96.1 0.017 3.8E-07 52.9 6.8 37 154-190 20-57 (240)
273 PRK05690 molybdopterin biosynt 96.1 0.0092 2E-07 54.9 5.1 36 154-189 28-64 (245)
274 TIGR00036 dapB dihydrodipicoli 96.0 0.043 9.4E-07 51.1 9.5 61 159-219 2-78 (266)
275 PRK09496 trkA potassium transp 96.0 0.01 2.2E-07 59.0 5.5 64 159-222 1-78 (453)
276 TIGR00658 orni_carb_tr ornithi 96.0 0.12 2.7E-06 49.0 12.6 90 156-245 146-264 (304)
277 cd05293 LDH_1 A subgroup of L- 96.0 0.02 4.4E-07 54.6 7.2 108 158-268 3-145 (312)
278 cd01339 LDH-like_MDH L-lactate 96.0 0.011 2.3E-07 55.9 5.3 57 161-218 1-75 (300)
279 PLN02968 Probable N-acetyl-gam 96.0 0.016 3.4E-07 56.9 6.4 95 156-256 36-145 (381)
280 cd05297 GH4_alpha_glucosidase_ 96.0 0.015 3.2E-07 57.9 6.3 61 159-219 1-84 (423)
281 PF13478 XdhC_C: XdhC Rossmann 96.0 0.024 5.1E-07 47.5 6.6 86 161-269 1-86 (136)
282 cd05292 LDH_2 A subgroup of L- 95.9 0.013 2.9E-07 55.6 5.5 61 159-220 1-78 (308)
283 PF03720 UDPG_MGDP_dh_C: UDP-g 95.9 0.012 2.6E-07 46.9 4.2 76 168-244 17-100 (106)
284 COG1648 CysG Siroheme synthase 95.8 0.011 2.4E-07 53.1 4.4 89 150-244 4-102 (210)
285 PRK00436 argC N-acetyl-gamma-g 95.8 0.022 4.8E-07 55.0 6.6 89 159-252 3-106 (343)
286 COG5322 Predicted dehydrogenas 95.8 0.048 1E-06 50.5 8.3 97 152-253 161-269 (351)
287 PRK08762 molybdopterin biosynt 95.8 0.022 4.7E-07 55.7 6.5 37 154-190 131-168 (376)
288 TIGR02853 spore_dpaA dipicolin 95.7 0.12 2.7E-06 48.6 11.3 109 158-273 1-121 (287)
289 COG0169 AroE Shikimate 5-dehyd 95.7 0.024 5.2E-07 53.3 6.4 91 155-248 123-229 (283)
290 PRK08644 thiamine biosynthesis 95.7 0.044 9.6E-07 49.3 7.6 37 154-190 24-61 (212)
291 PF02254 TrkA_N: TrkA-N domain 95.6 0.0075 1.6E-07 48.2 2.3 80 161-242 1-93 (116)
292 TIGR00670 asp_carb_tr aspartat 95.6 0.093 2E-06 49.8 10.0 89 156-245 148-263 (301)
293 PRK07688 thiamine/molybdopteri 95.6 0.026 5.7E-07 54.4 6.4 37 154-190 20-57 (339)
294 KOG2711 Glycerol-3-phosphate d 95.6 0.041 8.9E-07 52.5 7.4 91 156-248 19-142 (372)
295 COG1893 ApbA Ketopantoate redu 95.6 0.17 3.6E-06 48.2 11.7 136 159-298 1-154 (307)
296 PRK11891 aspartate carbamoyltr 95.6 0.23 5E-06 49.3 13.0 90 155-244 238-354 (429)
297 PRK08223 hypothetical protein; 95.6 0.045 9.8E-07 51.5 7.6 37 154-190 23-60 (287)
298 PLN02353 probable UDP-glucose 95.6 0.063 1.4E-06 54.1 9.1 99 155-256 321-456 (473)
299 PRK03515 ornithine carbamoyltr 95.6 0.14 3.1E-06 49.3 11.2 91 155-245 153-275 (336)
300 PRK10637 cysG siroheme synthas 95.6 0.018 3.8E-07 57.9 5.1 91 150-245 4-103 (457)
301 PRK14106 murD UDP-N-acetylmura 95.6 0.03 6.6E-07 55.6 6.8 107 155-261 2-132 (450)
302 PRK06270 homoserine dehydrogen 95.5 0.072 1.6E-06 51.4 9.1 106 159-264 3-145 (341)
303 PRK01390 murD UDP-N-acetylmura 95.5 0.03 6.6E-07 56.0 6.7 108 155-262 6-139 (460)
304 PRK02102 ornithine carbamoyltr 95.5 0.18 4E-06 48.5 11.6 90 156-245 153-273 (331)
305 PRK08328 hypothetical protein; 95.5 0.039 8.4E-07 50.3 6.7 37 154-190 23-60 (231)
306 cd01486 Apg7 Apg7 is an E1-lik 95.5 0.048 1E-06 51.6 7.4 29 160-188 1-30 (307)
307 TIGR01761 thiaz-red thiazoliny 95.4 0.096 2.1E-06 50.6 9.5 103 159-265 4-117 (343)
308 cd01492 Aos1_SUMO Ubiquitin ac 95.4 0.029 6.2E-07 49.9 5.4 37 154-190 17-54 (197)
309 PRK07411 hypothetical protein; 95.4 0.041 8.8E-07 54.1 6.9 83 154-237 34-155 (390)
310 PF03435 Saccharop_dh: Sacchar 95.4 0.014 3E-07 57.0 3.6 60 161-220 1-78 (386)
311 PLN02527 aspartate carbamoyltr 95.4 0.13 2.8E-06 48.9 10.1 90 156-245 149-266 (306)
312 PRK05600 thiamine biosynthesis 95.3 0.024 5.2E-07 55.3 5.1 37 154-190 37-74 (370)
313 PLN02520 bifunctional 3-dehydr 95.3 0.03 6.5E-07 57.3 5.9 39 154-192 375-413 (529)
314 PRK02006 murD UDP-N-acetylmura 95.3 0.04 8.7E-07 55.8 6.8 61 156-216 5-76 (498)
315 PLN00106 malate dehydrogenase 95.3 0.098 2.1E-06 50.2 9.0 92 157-248 17-138 (323)
316 PRK02472 murD UDP-N-acetylmura 95.3 0.046 9.9E-07 54.3 7.1 107 156-262 3-133 (447)
317 TIGR03316 ygeW probable carbam 95.3 0.39 8.4E-06 46.7 13.2 62 155-216 167-252 (357)
318 PRK02255 putrescine carbamoylt 95.3 0.1 2.3E-06 50.3 9.2 91 155-245 151-272 (338)
319 COG3288 PntA NAD/NADP transhyd 95.2 0.036 7.8E-07 52.2 5.6 92 153-245 159-281 (356)
320 PRK04284 ornithine carbamoyltr 95.2 0.18 3.8E-06 48.6 10.6 90 156-245 153-274 (332)
321 PRK03659 glutathione-regulated 95.2 0.018 3.8E-07 59.8 4.0 87 158-246 400-499 (601)
322 PRK12749 quinate/shikimate deh 95.2 0.042 9.1E-07 51.8 6.2 38 155-192 121-159 (288)
323 PRK11579 putative oxidoreducta 95.2 0.046 1E-06 52.6 6.6 64 159-222 5-77 (346)
324 PRK05086 malate dehydrogenase; 95.2 0.11 2.3E-06 49.6 8.9 88 159-247 1-120 (312)
325 cd05312 NAD_bind_1_malic_enz N 95.2 0.76 1.6E-05 43.1 14.2 180 117-320 4-224 (279)
326 PF00056 Ldh_1_N: lactate/mala 95.2 0.007 1.5E-07 50.9 0.6 92 159-252 1-123 (141)
327 PRK05597 molybdopterin biosynt 95.2 0.051 1.1E-06 52.7 6.7 37 154-190 24-61 (355)
328 PLN02948 phosphoribosylaminoim 95.2 0.055 1.2E-06 55.9 7.3 64 155-218 19-92 (577)
329 PLN02342 ornithine carbamoyltr 95.1 0.42 9E-06 46.3 12.8 90 156-245 192-307 (348)
330 TIGR01161 purK phosphoribosyla 95.1 0.049 1.1E-06 52.5 6.4 56 160-215 1-66 (352)
331 PRK10669 putative cation:proto 95.1 0.022 4.9E-07 58.5 4.1 82 159-242 418-512 (558)
332 PF13460 NAD_binding_10: NADH( 95.0 0.024 5.2E-07 48.7 3.7 62 161-222 1-73 (183)
333 cd00762 NAD_bind_malic_enz NAD 95.0 0.59 1.3E-05 43.2 12.8 176 117-318 4-223 (254)
334 PRK03369 murD UDP-N-acetylmura 95.0 0.051 1.1E-06 54.9 6.5 106 156-261 10-141 (488)
335 cd01338 MDH_choloroplast_like 95.0 0.19 4E-06 48.2 9.8 97 159-257 3-138 (322)
336 PLN02819 lysine-ketoglutarate 94.9 0.043 9.3E-07 60.0 6.0 64 157-220 568-659 (1042)
337 cd00300 LDH_like L-lactate deh 94.9 0.084 1.8E-06 50.0 7.2 84 161-245 1-115 (300)
338 PRK07878 molybdopterin biosynt 94.9 0.068 1.5E-06 52.6 6.8 37 154-190 38-75 (392)
339 PRK07232 bifunctional malic en 94.8 0.9 2E-05 48.3 15.3 154 103-295 153-325 (752)
340 COG2344 AT-rich DNA-binding pr 94.8 0.021 4.6E-07 50.1 2.7 63 159-221 85-158 (211)
341 PRK15182 Vi polysaccharide bio 94.8 0.15 3.1E-06 50.8 9.0 94 153-249 309-416 (425)
342 PRK05678 succinyl-CoA syntheta 94.8 0.23 5.1E-06 46.9 9.9 104 158-265 8-118 (291)
343 COG1004 Ugd Predicted UDP-gluc 94.8 0.086 1.9E-06 51.4 7.0 84 156-243 308-406 (414)
344 PRK04690 murD UDP-N-acetylmura 94.8 0.061 1.3E-06 54.1 6.3 107 156-262 6-140 (468)
345 cd05188 MDR Medium chain reduc 94.8 0.3 6.5E-06 43.9 10.3 87 157-248 134-235 (271)
346 PRK07806 short chain dehydroge 94.7 0.14 3E-06 46.1 8.0 36 156-191 4-40 (248)
347 PF04016 DUF364: Domain of unk 94.7 0.043 9.4E-07 46.5 4.4 85 156-246 9-96 (147)
348 PRK11064 wecC UDP-N-acetyl-D-m 94.7 0.094 2E-06 52.0 7.3 68 153-220 315-397 (415)
349 PRK04148 hypothetical protein; 94.7 0.083 1.8E-06 44.1 5.8 69 157-226 16-94 (134)
350 PRK03562 glutathione-regulated 94.7 0.031 6.7E-07 58.3 4.0 84 158-243 400-496 (621)
351 PRK07877 hypothetical protein; 94.6 0.1 2.2E-06 55.1 7.8 93 155-251 104-235 (722)
352 PRK12562 ornithine carbamoyltr 94.6 0.69 1.5E-05 44.6 12.8 91 155-245 153-275 (334)
353 PRK12862 malic enzyme; Reviewe 94.6 1 2.2E-05 48.2 15.1 155 103-296 161-334 (763)
354 cd01487 E1_ThiF_like E1_ThiF_l 94.6 0.097 2.1E-06 45.5 6.4 32 160-191 1-33 (174)
355 cd00704 MDH Malate dehydrogena 94.5 0.34 7.3E-06 46.5 10.5 96 160-257 2-136 (323)
356 COG2910 Putative NADH-flavin r 94.5 0.22 4.7E-06 43.9 8.2 62 159-220 1-73 (211)
357 PRK00421 murC UDP-N-acetylmura 94.5 0.067 1.5E-06 53.6 5.8 108 156-263 5-133 (461)
358 PRK14027 quinate/shikimate deh 94.4 0.046 1E-06 51.4 4.3 37 156-192 125-162 (283)
359 PLN02602 lactate dehydrogenase 94.4 0.089 1.9E-06 51.0 6.2 86 159-245 38-154 (350)
360 PRK06349 homoserine dehydrogen 94.4 0.15 3.2E-06 50.8 7.9 102 159-264 4-124 (426)
361 PRK01368 murD UDP-N-acetylmura 94.4 0.072 1.6E-06 53.4 5.7 104 156-261 4-128 (454)
362 PRK06398 aldose dehydrogenase; 94.3 0.23 4.9E-06 45.4 8.5 39 155-193 3-42 (258)
363 PRK12861 malic enzyme; Reviewe 94.3 0.55 1.2E-05 49.9 12.2 119 103-249 157-292 (764)
364 PF02629 CoA_binding: CoA bind 94.3 0.072 1.6E-06 41.6 4.4 64 158-221 3-74 (96)
365 PRK13814 pyrB aspartate carbam 94.3 0.26 5.6E-06 47.0 9.0 60 156-215 155-223 (310)
366 PRK09496 trkA potassium transp 94.3 0.072 1.6E-06 52.9 5.5 87 156-244 229-330 (453)
367 cd05294 LDH-like_MDH_nadp A la 94.3 0.35 7.6E-06 46.0 9.9 107 159-268 1-146 (309)
368 COG0281 SfcA Malic enzyme [Ene 94.3 0.4 8.6E-06 47.2 10.3 179 102-318 166-370 (432)
369 PRK04308 murD UDP-N-acetylmura 94.2 0.12 2.5E-06 51.5 6.8 107 156-262 3-135 (445)
370 PRK06392 homoserine dehydrogen 94.2 0.29 6.3E-06 47.0 9.2 104 159-263 1-135 (326)
371 COG0673 MviM Predicted dehydro 94.2 0.07 1.5E-06 50.7 5.0 66 159-224 4-82 (342)
372 PRK07231 fabG 3-ketoacyl-(acyl 94.1 0.13 2.8E-06 46.2 6.4 38 155-192 2-40 (251)
373 PRK06128 oxidoreductase; Provi 94.1 0.16 3.4E-06 47.6 7.1 35 155-189 52-87 (300)
374 PRK05442 malate dehydrogenase; 94.1 0.43 9.3E-06 45.8 10.1 96 159-256 5-139 (326)
375 PF00070 Pyr_redox: Pyridine n 94.1 0.1 2.3E-06 38.9 4.7 35 160-194 1-35 (80)
376 PTZ00325 malate dehydrogenase; 94.0 0.16 3.5E-06 48.6 7.1 64 156-219 6-86 (321)
377 PRK08300 acetaldehyde dehydrog 94.0 0.18 3.8E-06 47.9 7.2 83 158-245 4-101 (302)
378 PRK11863 N-acetyl-gamma-glutam 94.0 0.17 3.7E-06 48.2 7.1 76 159-245 3-81 (313)
379 PRK09880 L-idonate 5-dehydroge 94.0 0.15 3.3E-06 48.6 6.9 85 157-246 169-267 (343)
380 TIGR01202 bchC 2-desacetyl-2-h 94.0 0.12 2.5E-06 48.8 6.0 85 157-246 144-232 (308)
381 cd01337 MDH_glyoxysomal_mitoch 93.9 0.31 6.7E-06 46.5 8.7 88 159-247 1-119 (310)
382 PF00899 ThiF: ThiF family; I 93.8 0.061 1.3E-06 44.5 3.4 33 158-190 2-35 (135)
383 TIGR01758 MDH_euk_cyt malate d 93.8 0.5 1.1E-05 45.3 10.1 93 160-254 1-132 (324)
384 TIGR01772 MDH_euk_gproteo mala 93.8 0.26 5.5E-06 47.1 7.9 91 160-252 1-121 (312)
385 PRK05562 precorrin-2 dehydroge 93.7 2.3 5.1E-05 38.6 13.6 43 150-192 17-59 (223)
386 cd05290 LDH_3 A subgroup of L- 93.7 0.11 2.5E-06 49.3 5.3 59 160-218 1-77 (307)
387 cd08237 ribitol-5-phosphate_DH 93.7 0.2 4.3E-06 47.9 7.0 88 157-246 163-257 (341)
388 PRK14804 ornithine carbamoyltr 93.6 0.61 1.3E-05 44.5 10.2 62 155-216 150-225 (311)
389 PLN00112 malate dehydrogenase 93.6 0.39 8.5E-06 48.0 9.2 101 159-261 101-240 (444)
390 COG0078 ArgF Ornithine carbamo 93.6 1.3 2.7E-05 41.9 11.9 89 156-244 151-269 (310)
391 CHL00194 ycf39 Ycf39; Provisio 93.6 0.12 2.7E-06 48.8 5.4 60 159-218 1-73 (317)
392 TIGR03366 HpnZ_proposed putati 93.6 0.16 3.4E-06 47.1 6.0 35 157-191 120-155 (280)
393 cd08230 glucose_DH Glucose deh 93.5 0.12 2.5E-06 49.6 5.2 85 157-246 172-270 (355)
394 PRK14874 aspartate-semialdehyd 93.5 0.17 3.7E-06 48.7 6.3 84 158-246 1-95 (334)
395 TIGR01771 L-LDH-NAD L-lactate 93.4 0.19 4.2E-06 47.6 6.4 83 163-245 1-113 (299)
396 COG4007 Predicted dehydrogenas 93.4 0.23 5E-06 45.8 6.5 86 170-259 33-128 (340)
397 PLN02586 probable cinnamyl alc 93.4 0.33 7.2E-06 46.8 8.1 85 157-246 183-279 (360)
398 PRK10206 putative oxidoreducta 93.4 0.14 3E-06 49.4 5.4 63 160-222 3-77 (344)
399 PLN02383 aspartate semialdehyd 93.3 0.28 6.2E-06 47.4 7.5 83 157-245 6-100 (344)
400 TIGR03649 ergot_EASG ergot alk 93.3 0.24 5.1E-06 45.9 6.8 61 160-220 1-78 (285)
401 TIGR01759 MalateDH-SF1 malate 93.3 0.27 5.8E-06 47.2 7.2 94 159-254 4-136 (323)
402 PLN02662 cinnamyl-alcohol dehy 93.2 0.29 6.3E-06 45.9 7.4 62 157-218 3-85 (322)
403 PF03447 NAD_binding_3: Homose 93.2 0.052 1.1E-06 43.7 1.9 94 165-263 1-111 (117)
404 TIGR01851 argC_other N-acetyl- 93.2 0.33 7.2E-06 46.2 7.5 77 159-245 2-80 (310)
405 PLN02214 cinnamoyl-CoA reducta 93.1 0.29 6.2E-06 46.9 7.2 63 156-218 8-90 (342)
406 PRK15076 alpha-galactosidase; 93.1 0.13 2.8E-06 51.3 4.9 109 159-268 2-169 (431)
407 cd01491 Ube1_repeat1 Ubiquitin 93.1 0.39 8.4E-06 45.3 7.8 38 154-191 15-53 (286)
408 PRK06182 short chain dehydroge 93.1 0.14 3E-06 47.0 4.8 36 157-192 2-38 (273)
409 PRK00141 murD UDP-N-acetylmura 93.1 0.14 3E-06 51.6 5.1 108 155-262 12-146 (473)
410 PRK08192 aspartate carbamoyltr 93.0 0.55 1.2E-05 45.3 8.8 63 154-216 155-233 (338)
411 TIGR03215 ac_ald_DH_ac acetald 92.9 0.36 7.7E-06 45.5 7.3 81 159-244 2-94 (285)
412 PRK14851 hypothetical protein; 92.9 0.23 4.9E-06 52.3 6.5 35 154-188 39-74 (679)
413 PRK01438 murD UDP-N-acetylmura 92.9 0.17 3.6E-06 50.9 5.4 108 153-261 11-146 (480)
414 TIGR01019 sucCoAalpha succinyl 92.8 0.81 1.7E-05 43.1 9.5 105 157-265 5-116 (286)
415 cd01483 E1_enzyme_family Super 92.8 0.18 4E-06 41.9 4.7 32 160-191 1-33 (143)
416 cd01336 MDH_cytoplasmic_cytoso 92.8 0.31 6.7E-06 46.7 6.8 94 159-254 3-135 (325)
417 PRK07200 aspartate/ornithine c 92.7 0.78 1.7E-05 45.2 9.6 62 155-216 184-269 (395)
418 PF05222 AlaDh_PNT_N: Alanine 92.7 0.62 1.3E-05 38.9 7.8 93 172-274 18-119 (136)
419 TIGR02822 adh_fam_2 zinc-bindi 92.7 0.22 4.8E-06 47.4 5.7 85 157-246 165-255 (329)
420 PLN02657 3,8-divinyl protochlo 92.7 0.25 5.4E-06 48.5 6.2 39 153-191 55-94 (390)
421 cd01489 Uba2_SUMO Ubiquitin ac 92.7 0.56 1.2E-05 44.7 8.4 83 160-246 1-123 (312)
422 PRK06728 aspartate-semialdehyd 92.7 0.47 1E-05 45.9 7.9 82 157-245 4-99 (347)
423 PRK13529 malate dehydrogenase; 92.6 3.4 7.4E-05 42.4 14.1 212 77-319 237-500 (563)
424 PLN03209 translocon at the inn 92.5 0.17 3.8E-06 52.0 4.9 37 156-192 78-115 (576)
425 PRK05884 short chain dehydroge 92.5 0.2 4.4E-06 44.8 4.9 33 160-192 2-35 (223)
426 PRK12550 shikimate 5-dehydroge 92.4 0.11 2.5E-06 48.5 3.2 36 158-193 122-158 (272)
427 KOG0399 Glutamate synthase [Am 92.4 0.38 8.3E-06 52.6 7.3 66 155-220 1782-1881(2142)
428 PRK06701 short chain dehydroge 92.4 0.43 9.3E-06 44.6 7.1 38 154-191 42-80 (290)
429 PLN02989 cinnamyl-alcohol dehy 92.3 0.48 1E-05 44.6 7.5 62 157-218 4-86 (325)
430 PLN02896 cinnamyl-alcohol dehy 92.3 0.26 5.7E-06 47.2 5.7 66 153-218 5-88 (353)
431 PF05368 NmrA: NmrA-like famil 92.3 0.1 2.3E-06 46.8 2.8 60 161-220 1-75 (233)
432 PRK08040 putative semialdehyde 92.3 0.36 7.7E-06 46.6 6.5 83 157-245 3-97 (336)
433 PRK10537 voltage-gated potassi 92.3 0.26 5.7E-06 48.5 5.7 33 158-190 240-272 (393)
434 PRK12937 short chain dehydroge 92.2 0.5 1.1E-05 42.2 7.2 35 156-190 3-38 (245)
435 PLN02819 lysine-ketoglutarate 92.2 0.2 4.4E-06 54.9 5.3 90 156-245 201-338 (1042)
436 cd01488 Uba3_RUB Ubiquitin act 92.2 0.54 1.2E-05 44.4 7.5 88 160-248 1-131 (291)
437 TIGR03466 HpnA hopanoid-associ 92.1 0.31 6.6E-06 45.6 5.8 60 159-218 1-73 (328)
438 PRK15181 Vi polysaccharide bio 92.1 0.37 7.9E-06 46.2 6.4 36 156-191 13-49 (348)
439 PLN02695 GDP-D-mannose-3',5'-e 92.0 0.37 7.9E-06 46.8 6.4 61 157-217 20-93 (370)
440 TIGR01532 E4PD_g-proteo D-eryt 92.0 0.3 6.6E-06 46.8 5.6 29 160-188 1-33 (325)
441 PRK13376 pyrB bifunctional asp 91.9 0.78 1.7E-05 46.8 8.7 91 155-245 171-293 (525)
442 PLN02427 UDP-apiose/xylose syn 91.9 0.36 7.9E-06 46.9 6.3 65 153-217 9-94 (386)
443 TIGR01142 purT phosphoribosylg 91.8 0.36 7.8E-06 46.8 6.1 57 160-216 1-69 (380)
444 PLN02272 glyceraldehyde-3-phos 91.8 0.21 4.6E-06 49.4 4.4 30 159-188 86-116 (421)
445 PF03949 Malic_M: Malic enzyme 91.8 1.1 2.4E-05 41.5 8.8 122 117-262 4-158 (255)
446 PRK04523 N-acetylornithine car 91.8 1.5 3.2E-05 42.3 10.1 62 156-217 166-252 (335)
447 COG0039 Mdh Malate/lactate deh 91.8 0.45 9.7E-06 45.4 6.4 64 159-222 1-84 (313)
448 PRK15057 UDP-glucose 6-dehydro 91.8 0.51 1.1E-05 46.4 7.1 62 156-217 294-367 (388)
449 cd01485 E1-1_like Ubiquitin ac 91.7 0.23 5E-06 44.1 4.3 37 154-190 15-52 (198)
450 TIGR01214 rmlD dTDP-4-dehydror 91.7 0.41 9E-06 44.0 6.2 57 160-219 1-60 (287)
451 cd05283 CAD1 Cinnamyl alcohol 91.6 0.61 1.3E-05 44.2 7.4 85 157-246 169-264 (337)
452 KOG4230 C1-tetrahydrofolate sy 91.6 0.84 1.8E-05 46.6 8.3 138 153-320 157-295 (935)
453 PRK08324 short chain dehydroge 91.6 0.3 6.6E-06 51.5 5.6 39 154-192 418-457 (681)
454 PRK08374 homoserine dehydrogen 91.5 0.95 2.1E-05 43.6 8.6 114 159-277 3-156 (336)
455 PLN02178 cinnamyl-alcohol dehy 91.5 0.59 1.3E-05 45.5 7.3 35 157-191 178-212 (375)
456 PRK08664 aspartate-semialdehyd 91.5 0.76 1.6E-05 44.4 7.9 80 159-245 4-107 (349)
457 PRK06153 hypothetical protein; 91.2 0.25 5.4E-06 48.3 4.2 35 155-189 173-208 (393)
458 PRK03806 murD UDP-N-acetylmura 91.2 0.36 7.7E-06 47.9 5.4 105 156-261 4-129 (438)
459 COG1832 Predicted CoA-binding 91.1 2 4.3E-05 35.9 8.8 100 157-262 15-120 (140)
460 PRK08265 short chain dehydroge 91.0 0.66 1.4E-05 42.3 6.7 38 155-192 3-41 (261)
461 PRK12828 short chain dehydroge 91.0 0.37 8.1E-06 42.6 4.9 38 155-192 4-42 (239)
462 PRK08264 short chain dehydroge 91.0 0.48 1E-05 42.2 5.7 39 155-193 3-43 (238)
463 COG1063 Tdh Threonine dehydrog 91.0 0.5 1.1E-05 45.6 6.1 85 158-247 169-271 (350)
464 cd00755 YgdL_like Family of ac 91.0 0.35 7.5E-06 44.2 4.7 120 155-277 8-184 (231)
465 TIGR02622 CDP_4_6_dhtase CDP-g 90.9 0.54 1.2E-05 45.0 6.2 37 156-192 2-39 (349)
466 PRK03803 murD UDP-N-acetylmura 90.8 0.36 7.8E-06 48.1 5.1 103 158-261 6-132 (448)
467 PRK05865 hypothetical protein; 90.8 0.96 2.1E-05 48.9 8.5 90 159-248 1-105 (854)
468 PRK07424 bifunctional sterol d 90.8 0.33 7.2E-06 48.0 4.7 63 155-217 175-253 (406)
469 COG0057 GapA Glyceraldehyde-3- 90.8 0.68 1.5E-05 44.3 6.5 31 159-189 2-34 (335)
470 cd08239 THR_DH_like L-threonin 90.8 0.64 1.4E-05 44.0 6.6 85 157-246 163-263 (339)
471 PRK12367 short chain dehydroge 90.7 0.39 8.5E-06 43.9 4.8 64 155-218 11-88 (245)
472 cd08245 CAD Cinnamyl alcohol d 90.7 0.96 2.1E-05 42.4 7.7 85 157-246 162-257 (330)
473 COG0540 PyrB Aspartate carbamo 90.7 0.56 1.2E-05 44.4 5.9 60 156-215 156-230 (316)
474 cd08255 2-desacetyl-2-hydroxye 90.6 0.75 1.6E-05 42.0 6.7 86 157-247 97-192 (277)
475 PRK14852 hypothetical protein; 90.6 0.53 1.2E-05 51.2 6.3 158 155-320 329-544 (989)
476 PRK09288 purT phosphoribosylgl 90.6 0.83 1.8E-05 44.5 7.3 36 157-192 11-46 (395)
477 PRK06196 oxidoreductase; Provi 90.6 0.4 8.6E-06 45.2 4.9 38 155-192 23-61 (315)
478 PRK08217 fabG 3-ketoacyl-(acyl 90.6 0.42 9.1E-06 42.8 4.9 36 156-191 3-39 (253)
479 PRK06523 short chain dehydroge 90.4 0.49 1.1E-05 42.9 5.2 39 154-192 5-44 (260)
480 COG2227 UbiG 2-polyprenyl-3-me 90.4 1.1 2.3E-05 41.1 7.2 81 156-242 58-158 (243)
481 PF00044 Gp_dh_N: Glyceraldehy 90.4 0.31 6.8E-06 41.5 3.6 30 160-189 2-32 (151)
482 TIGR01087 murD UDP-N-acetylmur 90.3 0.41 8.9E-06 47.4 4.9 103 160-263 1-128 (433)
483 TIGR03451 mycoS_dep_FDH mycoth 90.3 0.75 1.6E-05 44.1 6.7 36 157-192 176-212 (358)
484 PLN02986 cinnamyl-alcohol dehy 90.3 1.1 2.3E-05 42.2 7.6 62 157-218 4-86 (322)
485 PLN02514 cinnamyl-alcohol dehy 90.3 0.64 1.4E-05 44.7 6.2 85 157-246 180-276 (357)
486 PRK07856 short chain dehydroge 90.2 0.5 1.1E-05 42.7 5.1 37 155-191 3-40 (252)
487 TIGR00978 asd_EA aspartate-sem 90.2 0.91 2E-05 43.7 7.1 82 159-245 1-104 (341)
488 PRK15116 sulfur acceptor prote 90.1 0.46 1E-05 44.4 4.8 36 155-190 27-63 (268)
489 PRK07523 gluconate 5-dehydroge 90.1 0.53 1.1E-05 42.6 5.2 38 155-192 7-45 (255)
490 TIGR01777 yfcH conserved hypot 90.1 0.74 1.6E-05 42.2 6.2 57 162-218 2-66 (292)
491 TIGR01757 Malate-DH_plant mala 90.1 1.6 3.6E-05 42.8 8.8 97 159-257 45-180 (387)
492 KOG0022 Alcohol dehydrogenase, 90.1 0.32 6.9E-06 46.2 3.6 37 157-193 192-229 (375)
493 PLN02206 UDP-glucuronate decar 90.1 0.75 1.6E-05 46.0 6.6 69 149-217 110-191 (442)
494 cd08281 liver_ADH_like1 Zinc-d 90.1 0.78 1.7E-05 44.3 6.6 85 157-246 191-291 (371)
495 PRK05671 aspartate-semialdehyd 90.0 1.1 2.3E-05 43.3 7.4 80 159-245 5-97 (336)
496 PLN03129 NADP-dependent malic 89.9 8.2 0.00018 39.8 13.9 187 102-318 288-518 (581)
497 PRK06171 sorbitol-6-phosphate 89.9 0.73 1.6E-05 41.9 6.0 39 155-193 6-45 (266)
498 TIGR01296 asd_B aspartate-semi 89.8 0.61 1.3E-05 45.0 5.6 80 160-245 1-92 (339)
499 smart00846 Gp_dh_N Glyceraldeh 89.8 0.49 1.1E-05 40.2 4.3 29 159-187 1-30 (149)
500 TIGR01832 kduD 2-deoxy-D-gluco 89.7 0.6 1.3E-05 41.9 5.2 36 156-191 3-39 (248)
No 1
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.5e-74 Score=549.03 Aligned_cols=313 Identities=29% Similarity=0.423 Sum_probs=275.7
Q ss_pred CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160 10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA 89 (330)
Q Consensus 10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~ 89 (330)
||||||++.+. .+...+. |++.+++..+........+.+.+.++++|+++++ ..++++++++++|+||||++.|+
T Consensus 1 ~~~~vl~~~~~--~~~~~~~--l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~ 75 (323)
T PRK15409 1 MKPSVILYKAL--PDDLLQR--LEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISV 75 (323)
T ss_pred CCceEEEeCCC--CHHHHHH--HHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECce
Confidence 67999999987 4555555 7777776443221111223345567899999975 35899999999999999999999
Q ss_pred CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-CCCCccccCCceEEEEecCh
Q 020160 90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGS 168 (330)
Q Consensus 90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~g~~vgIiG~G~ 168 (330)
|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+|+|+|.... ....|.+|+|||+||||+|+
T Consensus 76 G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~ 155 (323)
T PRK15409 76 GYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGR 155 (323)
T ss_pred ecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999999999999999996421 11247899999999999999
Q ss_pred HHHHHHHHHH-hCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEE
Q 020160 169 IGSEVAKRLE-AFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN 243 (330)
Q Consensus 169 IG~~~A~~l~-~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN 243 (330)
||+.+|++++ +|||+|+||+++..... +. .+.++++++++||+|++|+|+|++|++||+++.|++||||++|||
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN 234 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKEAEERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFIN 234 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEE
Confidence 9999999998 99999999998754321 22 246999999999999999999999999999999999999999999
Q ss_pred cCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 020160 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322 (330)
Q Consensus 244 ~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~ 322 (330)
+|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||.|.+++.++.+.+++||.+|++|+++
T Consensus 235 ~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~ 314 (323)
T PRK15409 235 AGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVE 314 (323)
T ss_pred CCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999764 5899999999999999999999999999999999999999999
Q ss_pred CCCccC
Q 020160 323 LTPFAA 328 (330)
Q Consensus 323 ~~~v~~ 328 (330)
.|.|+.
T Consensus 315 ~~~vn~ 320 (323)
T PRK15409 315 KNCVNP 320 (323)
T ss_pred CcccCc
Confidence 998874
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-74 Score=548.40 Aligned_cols=307 Identities=31% Similarity=0.450 Sum_probs=270.6
Q ss_pred CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160 10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA 89 (330)
Q Consensus 10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~ 89 (330)
|+++++...+. .+...+. +...... ..........+.+.+.++++|++++ +.+++++++++.+|+||||++.|+
T Consensus 2 ~~~~vl~~~~~--~~~~~~~--l~~~~~~-~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~ 75 (324)
T COG0111 2 MMIKVLVTDPL--APDALEE--LLAAYDV-EVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGA 75 (324)
T ss_pred CcceeeccCcc--CHHHHHH--HHhcccc-ccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccc
Confidence 56788888887 5655555 5443211 1111112223344566789999998 778999999999999999999999
Q ss_pred CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChH
Q 020160 90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI 169 (330)
Q Consensus 90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~I 169 (330)
|+||||+++++++||.|+|+|+.|+.+||||+++++|+++|+++.+++.+|+|.|.+. ...|.+|+|||+||||+|+|
T Consensus 76 Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~g~el~gkTvGIiG~G~I 153 (324)
T COG0111 76 GVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK--AFRGTELAGKTVGIIGLGRI 153 (324)
T ss_pred cccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc--ccccccccCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999999999762 23477999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCCC-C---CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160 170 GSEVAKRLEAFGCCVSYNSRNKKPS-V---TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 170 G~~~A~~l~~~G~~V~~~~~~~~~~-~---~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~ 245 (330)
|+.+|+++++|||+|++||+..... . +.....+|++++++||||++|+|+|++|++|||++.|++||+|++|||+|
T Consensus 154 G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a 233 (324)
T COG0111 154 GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA 233 (324)
T ss_pred HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence 9999999999999999999954432 2 33446789999999999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc-ccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 020160 246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE-QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLT 324 (330)
Q Consensus 246 rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 324 (330)
||++||++||++||++|+|+||+||||++||++++ |||++|||++|||+||+|.|++.++.+.+++|+.+|++|+++.|
T Consensus 234 RG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 313 (324)
T COG0111 234 RGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN 313 (324)
T ss_pred CcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999998875 99999999999999999999999999999999999999999544
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.9e-74 Score=545.19 Aligned_cols=313 Identities=36% Similarity=0.573 Sum_probs=279.6
Q ss_pred CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160 10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA 89 (330)
Q Consensus 10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~ 89 (330)
||++++.+.+. .+...+. +.+.|++..+.....+.. .+.+..+++|++++....++++++++++|+||+|+..|+
T Consensus 1 mk~~~~~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~ 75 (324)
T COG1052 1 MKIVVLSTRKL--PPEVLER--LKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSA 75 (324)
T ss_pred CCcEEEecCcC--CHHHHHH--hhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEecc
Confidence 67888888777 4556666 777788655443212222 455667899999998788999999999999999999999
Q ss_pred CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC--CCCCccccCCceEEEEecC
Q 020160 90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA--EFPLGSKLGGKRVGIVGLG 167 (330)
Q Consensus 90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~--~~~~~~~l~g~~vgIiG~G 167 (330)
||||||+++|+++||.|+|+|++++++||||+++|||++.|++.+.++.+|+|.|...+ ....+.+++|||+||||+|
T Consensus 76 G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~G 155 (324)
T COG1052 76 GYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLG 155 (324)
T ss_pred ccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999997653 2345889999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEE
Q 020160 168 SIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN 243 (330)
Q Consensus 168 ~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN 243 (330)
+||+++|+++++|||+|+||++++.+. .++.+. +++|++++||+|++|||+|++|+||||++.|++||+|++|||
T Consensus 156 rIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVN 234 (324)
T COG1052 156 RIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVN 234 (324)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEE
Confidence 999999999999999999999987521 134444 499999999999999999999999999999999999999999
Q ss_pred cCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC-CcccccCCc---eEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 020160 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV-PEQLFALDN---VVLSPHSAVFTPESFKDVCELAVANLEAFFSN 319 (330)
Q Consensus 244 ~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~n---vilTPHia~~t~~~~~~~~~~~~~nl~~~~~g 319 (330)
+|||++||++||++||++|+|+|||+|||+.||.. +++|+.++| |++|||+|+.|.|++.+|.+.+++|+.+|++|
T Consensus 235 taRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g 314 (324)
T COG1052 235 TARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDG 314 (324)
T ss_pred CCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999985 568887777 99999999999999999999999999999999
Q ss_pred CCCCCCccC
Q 020160 320 KPLLTPFAA 328 (330)
Q Consensus 320 ~~~~~~v~~ 328 (330)
+.+.++|+.
T Consensus 315 ~~~~~~v~~ 323 (324)
T COG1052 315 GVPPNEVNP 323 (324)
T ss_pred CCCCCCCCC
Confidence 999999875
No 4
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=5.4e-72 Score=534.26 Aligned_cols=314 Identities=34% Similarity=0.508 Sum_probs=276.8
Q ss_pred CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160 10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA 89 (330)
Q Consensus 10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~ 89 (330)
|||||+++.+. .+...+. +++.+++..+.+......+.+.+.++++|+++++...++++++++++|+||||++.|+
T Consensus 1 ~~~kil~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~ 76 (333)
T PRK13243 1 MKPKVFITREI--PENGIEM--LEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAV 76 (333)
T ss_pred CCceEEEECCC--CHHHHHH--HhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCc
Confidence 68999998876 4555555 7776665433221111234445667899999987666899999999999999999999
Q ss_pred CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-----CCCCccccCCceEEEE
Q 020160 90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-----EFPLGSKLGGKRVGIV 164 (330)
Q Consensus 90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-----~~~~~~~l~g~~vgIi 164 (330)
|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+|+|.|.... ....|.+|+|||||||
T Consensus 77 G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIi 156 (333)
T PRK13243 77 GYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGII 156 (333)
T ss_pred cccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999996421 1124789999999999
Q ss_pred ecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcE
Q 020160 165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240 (330)
Q Consensus 165 G~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai 240 (330)
|+|.||+.+|++|++|||+|.+|++++.... +. ...++++++++||+|++|+|++++|+++|+++.|++||+|++
T Consensus 157 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~ 235 (333)
T PRK13243 157 GFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAI 235 (333)
T ss_pred CcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeE
Confidence 9999999999999999999999999765421 22 245899999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 020160 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNK 320 (330)
Q Consensus 241 lIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~ 320 (330)
|||+|||++||+++|+++|++|+|+||+||||++||++++|||++|||++|||+||+|.++..++.+.+++||.+|++|+
T Consensus 236 lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 315 (333)
T PRK13243 236 LVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGE 315 (333)
T ss_pred EEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999987679999999999999999999999999999999999999999
Q ss_pred CCCCCccC
Q 020160 321 PLLTPFAA 328 (330)
Q Consensus 321 ~~~~~v~~ 328 (330)
++.|.|+.
T Consensus 316 ~~~~~v~~ 323 (333)
T PRK13243 316 VPPTLVNR 323 (333)
T ss_pred CCCcccCH
Confidence 99998874
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-71 Score=526.09 Aligned_cols=302 Identities=27% Similarity=0.410 Sum_probs=261.3
Q ss_pred eEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCC
Q 020160 13 QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN 92 (330)
Q Consensus 13 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 92 (330)
||+++.+..+.+...+. +++.+++..+. . .+ .+.+.+.++++|+++++ ..++++++++.+|+||||++.|+|+|
T Consensus 2 ki~~~~~~~~~~~~~~~--l~~~~~~~~~~-~-~~-~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d 75 (311)
T PRK08410 2 KIVILDAKTLGDKDLSV--FEEFGDFQIYP-T-TS-PEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTN 75 (311)
T ss_pred eEEEEecCCCChhhHHH--HhhCceEEEeC-C-CC-HHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccc
Confidence 47777664224444444 76666654432 1 12 23345567899999885 56899999999999999999999999
Q ss_pred CCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC----CCccccCCceEEEEecCh
Q 020160 93 HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEF----PLGSKLGGKRVGIVGLGS 168 (330)
Q Consensus 93 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~----~~~~~l~g~~vgIiG~G~ 168 (330)
+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+|+|.|.....+ ..+.+|+|||+||||+|+
T Consensus 76 ~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~ 155 (311)
T PRK08410 76 NVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT 155 (311)
T ss_pred cccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence 9999999999999999999999999999999999999999999999999999643211 124689999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160 169 IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 169 IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~ 248 (330)
||+.+|+++++|||+|++|+++...........++++++++||+|++|+|+|++|+++||++.|++||||++|||+|||+
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence 99999999999999999999975432221225689999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccC---CceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160 249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFAL---DNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321 (330)
Q Consensus 249 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~---~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~ 321 (330)
+||++||++||++|+|+ |+||||++||+++ +|||++ |||++|||+||+|.++..++.+.+++|+.+|++|+.
T Consensus 236 vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred ccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999 9999999999865 489986 899999999999999999999999999999999863
No 6
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-70 Score=521.13 Aligned_cols=306 Identities=28% Similarity=0.449 Sum_probs=261.3
Q ss_pred eEEEecCCCCc--ccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCC
Q 020160 13 QVLLLRKPSGF--AMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAG 90 (330)
Q Consensus 13 ~vl~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G 90 (330)
||+++++..+. +...+. +++.+..+...... ..+.+.+.++++|+++++ ..++++++++++|+||||++.|+|
T Consensus 2 ~i~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G 76 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSP--LEQAFDELQLHDAT--TPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATG 76 (317)
T ss_pred eEEEEccccCCccccchhH--HHhhCCeEEEecCC--CHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcc
Confidence 37777653211 222333 66555333322221 223445667899998875 468999999999999999999999
Q ss_pred CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC----CCccccCCceEEEEec
Q 020160 91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEF----PLGSKLGGKRVGIVGL 166 (330)
Q Consensus 91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~----~~~~~l~g~~vgIiG~ 166 (330)
+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.....+ ..+.+|+|||+||||+
T Consensus 77 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~ 156 (317)
T PRK06487 77 TNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGH 156 (317)
T ss_pred ccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999643211 1246899999999999
Q ss_pred ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160 167 GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 167 G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r 246 (330)
|+||+.+|+++++|||+|++|+++.... . ....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+||
T Consensus 157 G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 157 GELGGAVARLAEAFGMRVLIGQLPGRPA-R-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred CHHHHHHHHHHhhCCCEEEEECCCCCcc-c-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999999864322 1 2245899999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-ccccc--CCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020160 247 GAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFA--LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323 (330)
Q Consensus 247 g~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~--~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 323 (330)
|++||++||++||++|+|+||+||||++||++. +|||. +|||++|||+||+|.++..++.+.+++||.+|++|+++
T Consensus 235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~- 313 (317)
T PRK06487 235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL- 313 (317)
T ss_pred ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999875 48995 89999999999999999999999999999999999864
Q ss_pred CCc
Q 020160 324 TPF 326 (330)
Q Consensus 324 ~~v 326 (330)
+.|
T Consensus 314 ~~v 316 (317)
T PRK06487 314 RVV 316 (317)
T ss_pred cCC
Confidence 443
No 7
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-70 Score=535.03 Aligned_cols=315 Identities=24% Similarity=0.327 Sum_probs=276.4
Q ss_pred CCCCCCCeEEEecCCCCcccccchHhhhcc-C-eEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcce
Q 020160 6 HFAVQFPQVLLLRKPSGFAMLGEQFFTSNK-F-QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRL 83 (330)
Q Consensus 6 ~~~~~k~~vl~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~ 83 (330)
|-+++|+||+++.+. .+...+. +++. + ++.. .....+ .+.+.+.++++|++++++..++++++++++|+|||
T Consensus 5 ~~~~~~~~ili~~~~--~~~~~~~--l~~~~~~~v~~-~~~~~~-~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~ 78 (409)
T PRK11790 5 SLPKDKIKFLLLEGV--HQSAVEV--LRAAGYTNIEY-HKGALD-EEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVA 78 (409)
T ss_pred CCCCCCeEEEEECCC--CHHHHHH--HHhcCCceEEE-CCCCCC-HHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeE
Confidence 445566789998766 4555555 6553 5 4433 222222 33445667899999877667899999999999999
Q ss_pred eEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEE
Q 020160 84 VVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGI 163 (330)
Q Consensus 84 I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgI 163 (330)
|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|... ...+.+|+|||+||
T Consensus 79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~L~gktvGI 156 (409)
T PRK11790 79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS--AAGSFEVRGKTLGI 156 (409)
T ss_pred EEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc--ccCcccCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999653 23478999999999
Q ss_pred EecChHHHHHHHHHHhCCCEEEEECCCCCCCC-CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEE
Q 020160 164 VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242 (330)
Q Consensus 164 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI 242 (330)
||+|+||+.+|+++++|||+|++||++..... +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++||
T Consensus 157 iG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI 236 (409)
T PRK11790 157 VGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILI 236 (409)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 99999999999999999999999998754332 23345689999999999999999999999999999999999999999
Q ss_pred EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-----cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020160 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-----EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFF 317 (330)
Q Consensus 243 N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~ 317 (330)
|+|||++||++||+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.++..++.+.+++|+.+|+
T Consensus 237 N~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~ 316 (409)
T PRK11790 237 NASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYS 316 (409)
T ss_pred ECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999764 48999999999999999999999999999999999999
Q ss_pred cCCCCCCCccC
Q 020160 318 SNKPLLTPFAA 328 (330)
Q Consensus 318 ~g~~~~~~v~~ 328 (330)
+|+++.+.|+.
T Consensus 317 ~~~~~~~~vn~ 327 (409)
T PRK11790 317 DNGSTLSAVNF 327 (409)
T ss_pred cCCCcCcceec
Confidence 99999998873
No 8
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.1e-69 Score=525.42 Aligned_cols=316 Identities=24% Similarity=0.315 Sum_probs=272.5
Q ss_pred CCCCCeEEEecCCCCccc-ccchHhhhcc-CeEEEeccCC-CChHHHHhhcc-CCceEEEEcCCCCCCHHHHccCCC--c
Q 020160 8 AVQFPQVLLLRKPSGFAM-LGEQFFTSNK-FQYLKAYESA-LPLHEFLTLHA-HSVKAIFSSAGAPVTAEILRLLPE--V 81 (330)
Q Consensus 8 ~~~k~~vl~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~-~~~d~ii~~~~~~~~~~~l~~~~~--L 81 (330)
+--|++|+++.+. .+. ..+. |++. +++..+.... ....+.+.+.+ .++|++++....++++++++++|+ |
T Consensus 12 ~~~~~~v~~~~~~--~~~~~~~~--L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~l 87 (386)
T PLN02306 12 PNGKYRVVSTKPM--PGTRWINL--LVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGG 87 (386)
T ss_pred CCCCceEEEeCCC--CcHHHHHH--HHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCc
Confidence 3456899999887 332 3444 6553 6654322111 11234445554 569999987767899999999996 6
Q ss_pred ceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCC-CCCccccCCce
Q 020160 82 RLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE-FPLGSKLGGKR 160 (330)
Q Consensus 82 k~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~~~l~g~~ 160 (330)
|+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+.. ...|.+++|+|
T Consensus 88 k~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gkt 167 (386)
T PLN02306 88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQT 167 (386)
T ss_pred eEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999853321 22478999999
Q ss_pred EEEEecChHHHHHHHHHH-hCCCEEEEECCCCCCCC-------C------------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160 161 VGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSV-------T------------YPFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 161 vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~~~-------~------------~~~~~~l~ell~~aDvV~l~~P~t 220 (330)
+||||+|+||+.+|++++ +|||+|++||++..... + .....++++++++||+|++|+|+|
T Consensus 168 vGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt 247 (386)
T PLN02306 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD 247 (386)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC
Confidence 999999999999999985 99999999998764211 0 112358999999999999999999
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHH
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~ 300 (330)
++|++||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||.++++||++|||++|||+||+|.+
T Consensus 248 ~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e 327 (386)
T PLN02306 248 KTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKW 327 (386)
T ss_pred hhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999876789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160 301 SFKDVCELAVANLEAFFSNKPLLTPFA 327 (330)
Q Consensus 301 ~~~~~~~~~~~nl~~~~~g~~~~~~v~ 327 (330)
+.+++.+.+++||.+|++|+++.|.||
T Consensus 328 ~~~~~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 328 TREGMATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 999999999999999999999999998
No 9
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.1e-69 Score=520.50 Aligned_cols=312 Identities=24% Similarity=0.414 Sum_probs=266.8
Q ss_pred CcCCCCCCCCCeEEEecCCCCcccccc--hHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCC
Q 020160 2 ATHHHFAVQFPQVLLLRKPSGFAMLGE--QFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLP 79 (330)
Q Consensus 2 ~~~~~~~~~k~~vl~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~ 79 (330)
|+||+ -+||||||++.+. .+.... ...+ +.+++..+.. .+.++ +.+.++++|+++++ ..++++++++.+|
T Consensus 10 ~~~~~-~~~~~~vl~~~~~--~~~~~~~~~~~~-~~~~~~~~~~--~~~~e-~~~~~~~~d~~i~~-~~~~~~~~l~~~~ 81 (347)
T PLN02928 10 RVHHS-DMRPTRVLFCGPE--FPASYSYTREYL-QKYPFIQVDA--VARED-VPDVIANYDICVPK-MMRLDADIIARAS 81 (347)
T ss_pred hccCC-CCCCCEEEEECCC--chhHHHHHHHHh-hcCCeeEecC--CCHHH-HHHHhcCCcEEEEC-CCCCCHHHHhcCC
Confidence 45554 5777999999876 232111 1113 3344333221 12233 45567899998875 4589999999999
Q ss_pred CcceeEEcCCCCCCCChhHHhhcCcEEEeCCCC---chhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCcccc
Q 020160 80 EVRLVVATSAGLNHIDVVECRRRGVALANAGNV---FSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKL 156 (330)
Q Consensus 80 ~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l 156 (330)
+||||++.|+|+|+||++++.++||.|+|+|++ ++.+||||+++++|+++|++..+++.+++|.|.. +.+.+|
T Consensus 82 ~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~----~~~~~l 157 (347)
T PLN02928 82 QMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE----PIGDTL 157 (347)
T ss_pred CceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc----ccccCC
Confidence 999999999999999999999999999999985 7899999999999999999999999999999953 246789
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCC----------------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT----------------YPFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~----------------~~~~~~l~ell~~aDvV~l~~P~t 220 (330)
+|||+||||+|.||+.+|++|++|||+|++|+++...... .....++++++++||+|++|+|+|
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCC
Confidence 9999999999999999999999999999999987432110 113568999999999999999999
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCH
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTP 299 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~ 299 (330)
++|++||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+||+|.
T Consensus 238 ~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~ 317 (347)
T PLN02928 238 KETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTE 317 (347)
T ss_pred hHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999764 48999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCC
Q 020160 300 ESFKDVCELAVANLEAFFSNKPLLTP 325 (330)
Q Consensus 300 ~~~~~~~~~~~~nl~~~~~g~~~~~~ 325 (330)
+++.++.+.+++|+.+|++|+++.+.
T Consensus 318 ~~~~~~~~~~~~nl~~~~~g~~~~~~ 343 (347)
T PLN02928 318 YSYRSMGKIVGDAALQLHAGRPLTGI 343 (347)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCce
Confidence 99999999999999999999987653
No 10
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-69 Score=510.98 Aligned_cols=269 Identities=26% Similarity=0.446 Sum_probs=244.2
Q ss_pred HHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHh
Q 020160 51 FLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR 130 (330)
Q Consensus 51 ~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R 130 (330)
.+.+.++++|++++. ..++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|
T Consensus 37 ~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R 115 (314)
T PRK06932 37 QTIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKH 115 (314)
T ss_pred HHHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHh
Confidence 345567899988874 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHcCCCCCCCCC----CCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHH
Q 020160 131 KLSAADCFVRQGLWPINAEF----PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCEL 206 (330)
Q Consensus 131 ~~~~~~~~~~~g~W~~~~~~----~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el 206 (330)
++..+++.+++|.|.....+ ..+.+|+|||+||||+|.||+.+|+++++|||+|++|+++...... ..+.+++++
T Consensus 116 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~el 194 (314)
T PRK06932 116 SLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFEEV 194 (314)
T ss_pred ChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHHHH
Confidence 99999999999999643211 1246899999999999999999999999999999999976432211 124689999
Q ss_pred hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccc--
Q 020160 207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLF-- 283 (330)
Q Consensus 207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~-- 283 (330)
+++||+|++|+|+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. +|||
T Consensus 195 l~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~ 274 (314)
T PRK06932 195 LKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQA 274 (314)
T ss_pred HHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999764 4888
Q ss_pred --cCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160 284 --ALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321 (330)
Q Consensus 284 --~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~ 321 (330)
++|||++|||+||+|.++.+++.+.+++||.+|++|+.
T Consensus 275 ~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 275 AKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred hcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 59999999999999999999999999999999998863
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-69 Score=520.98 Aligned_cols=298 Identities=23% Similarity=0.392 Sum_probs=265.7
Q ss_pred hhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcC--CCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEe
Q 020160 32 TSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSA--GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN 108 (330)
Q Consensus 32 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~--~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n 108 (330)
|++. ++++...+...+ .+.+.+.++++|++++.. ..++++++++++|+||||++.|+|+|+||+++|+++||.|+|
T Consensus 64 l~~~g~e~~~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n 142 (385)
T PRK07574 64 LEERGHELVVTSDKDGP-DSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAE 142 (385)
T ss_pred HHhcCcEEEEeCCCCCC-HHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEc
Confidence 5554 565543332222 344456678999999853 357999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEEC
Q 020160 109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188 (330)
Q Consensus 109 ~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~ 188 (330)
++++++.+||||++++||+++|++..+++.+++|.|........+.+|+||||||||+|+||+.+|++|++|||+|++||
T Consensus 143 ~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~d 222 (385)
T PRK07574 143 VTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTD 222 (385)
T ss_pred CCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence 99999999999999999999999999999999999975321234678999999999999999999999999999999999
Q ss_pred CCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160 189 RNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE 263 (330)
Q Consensus 189 ~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~ 263 (330)
++.... .+.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+
T Consensus 223 r~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~ 302 (385)
T PRK07574 223 RHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGH 302 (385)
T ss_pred CCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCC
Confidence 976321 133345789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccCCC
Q 020160 264 IGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAVD 330 (330)
Q Consensus 264 i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~~~ 330 (330)
|+||+||||++||++. +|||++|||++|||+||+|.+++.++.+.+++||++|++|+++.|...+||
T Consensus 303 i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~ 370 (385)
T PRK07574 303 LAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLIVD 370 (385)
T ss_pred ccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEec
Confidence 9999999999999865 489999999999999999999999999999999999999999999998886
No 12
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-68 Score=516.12 Aligned_cols=293 Identities=25% Similarity=0.355 Sum_probs=259.1
Q ss_pred hhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcC--CCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEe
Q 020160 32 TSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSA--GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN 108 (330)
Q Consensus 32 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~--~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n 108 (330)
|++. ++++...+.+. ..+.+.+.++++|++|+.. ..+++++.++++|+||||++.|+|+|+||+++|+++||.|+|
T Consensus 71 l~~~g~~~v~~~~~~~-~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n 149 (386)
T PLN03139 71 LESQGHQYIVTDDKEG-PDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAE 149 (386)
T ss_pred HHhcCCeEEEeCCCCC-CHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEE
Confidence 5554 45554333322 3344566778999999853 247999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEEC
Q 020160 109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188 (330)
Q Consensus 109 ~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~ 188 (330)
++|+|+.+||||++++||++.|++..+++.+++|.|........+.+|.||||||||+|+||+.+|++|++|||+|++||
T Consensus 150 ~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d 229 (386)
T PLN03139 150 VTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHD 229 (386)
T ss_pred CCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEC
Confidence 99999999999999999999999999999999999974321234678999999999999999999999999999999999
Q ss_pred CCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160 189 RNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE 263 (330)
Q Consensus 189 ~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~ 263 (330)
++.... .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+
T Consensus 230 ~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~ 309 (386)
T PLN03139 230 RLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGH 309 (386)
T ss_pred CCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCC
Confidence 875321 133345689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 020160 264 IGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325 (330)
Q Consensus 264 i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~ 325 (330)
|+||++|||++||++. +|||++|||++|||+||.|.+++.++.+.+++||.+|++|+++...
T Consensus 310 l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~ 372 (386)
T PLN03139 310 IGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQ 372 (386)
T ss_pred ceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999999999999865 4899999999999999999999999999999999999999975544
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=9.5e-68 Score=532.30 Aligned_cols=307 Identities=29% Similarity=0.419 Sum_probs=272.1
Q ss_pred eEEEecCCCCcccccchHhhhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCC
Q 020160 13 QVLLLRKPSGFAMLGEQFFTSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGL 91 (330)
Q Consensus 13 ~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 91 (330)
|||++.+. .+...+. +++. +++.. . ...+ .+.+.+.++++|++++++.+++++++++++|+||||++.|+|+
T Consensus 1 ~vli~~~~--~~~~~~~--l~~~~~~~~~-~-~~~~-~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 73 (525)
T TIGR01327 1 KVLIADPI--SPDGIDI--LEDVGVEVDV-Q-TGLS-REELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGV 73 (525)
T ss_pred CEEEeCCC--CHHHHHH--HHhcCcEEEe-C-CCCC-HHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCccc
Confidence 47777766 4555555 6554 45543 2 1222 3344566789999998877789999999999999999999999
Q ss_pred CCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHH
Q 020160 92 NHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGS 171 (330)
Q Consensus 92 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~ 171 (330)
|+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+|+|+|.+. ...|.+|+|||+||||+|+||+
T Consensus 74 d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~ 151 (525)
T TIGR01327 74 DNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK--AFMGTELYGKTLGVIGLGRIGS 151 (525)
T ss_pred chhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc--ccCccccCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999653 2357899999999999999999
Q ss_pred HHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160 172 EVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 172 ~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg 247 (330)
.+|++|++|||+|++||++.... .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||
T Consensus 152 ~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 231 (525)
T TIGR01327 152 IVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARG 231 (525)
T ss_pred HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCC
Confidence 99999999999999999864321 13333458999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160 248 AIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFA 327 (330)
Q Consensus 248 ~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 327 (330)
++||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++.+.+++|+.+|++|+++.|.||
T Consensus 232 ~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 311 (525)
T TIGR01327 232 GIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVN 311 (525)
T ss_pred ceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceee
Confidence 99999999999999999999999999999777799999999999999999999999999999999999999999999887
Q ss_pred C
Q 020160 328 A 328 (330)
Q Consensus 328 ~ 328 (330)
.
T Consensus 312 ~ 312 (525)
T TIGR01327 312 A 312 (525)
T ss_pred C
Confidence 5
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-67 Score=526.20 Aligned_cols=306 Identities=29% Similarity=0.407 Sum_probs=271.7
Q ss_pred eEEEecCCCCcccccchHhhhcc--CeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCC
Q 020160 13 QVLLLRKPSGFAMLGEQFFTSNK--FQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAG 90 (330)
Q Consensus 13 ~vl~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G 90 (330)
||+++.+. .+...+. |++. +++.. . ...+. +.+.+.++++|++++++.+++++++++++|+||||++.|+|
T Consensus 2 ~ili~~~~--~~~~~~~--l~~~~~~~v~~-~-~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G 74 (526)
T PRK13581 2 KVLVSDPI--SPAGLEI--LKDAPGVEVDV-K-TGLDK-EELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVG 74 (526)
T ss_pred eEEEeCCC--CHHHHHH--HhccCCeEEEe-C-CCCCH-HHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcc
Confidence 68888776 4555555 6664 45432 2 12223 33456678999999877778999999999999999999999
Q ss_pred CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHH
Q 020160 91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIG 170 (330)
Q Consensus 91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG 170 (330)
+|+||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+. ...|.+|+|||+||||+|+||
T Consensus 75 ~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG 152 (526)
T PRK13581 75 VDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK--KFMGVELYGKTLGIIGLGRIG 152 (526)
T ss_pred cccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc--CccccccCCCEEEEECCCHHH
Confidence 999999999999999999999999999999999999999999999999999999653 235789999999999999999
Q ss_pred HHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160 171 SEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 171 ~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r 246 (330)
+.+|+++++|||+|++||++.... .+... .++++++++||+|++|+|++++|+++|+++.|++||+|++|||+||
T Consensus 153 ~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 153 SEVAKRAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCAR 231 (526)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCC
Confidence 999999999999999999865322 12332 3899999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Q 020160 247 GAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF 326 (330)
Q Consensus 247 g~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 326 (330)
|++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+++.++.+.+++|+.+|++|+++.|.|
T Consensus 232 G~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 311 (526)
T PRK13581 232 GGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAV 311 (526)
T ss_pred CceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCcee
Confidence 99999999999999999999999999999987779999999999999999999999999999999999999999999988
Q ss_pred cC
Q 020160 327 AA 328 (330)
Q Consensus 327 ~~ 328 (330)
|.
T Consensus 312 n~ 313 (526)
T PRK13581 312 NL 313 (526)
T ss_pred eC
Confidence 74
No 15
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-67 Score=484.53 Aligned_cols=309 Identities=25% Similarity=0.361 Sum_probs=275.2
Q ss_pred CCCCCCeEEEecCCCCcccccchHhhhccC-eEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHc-cCCCccee
Q 020160 7 FAVQFPQVLLLRKPSGFAMLGEQFFTSNKF-QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILR-LLPEVRLV 84 (330)
Q Consensus 7 ~~~~k~~vl~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~-~~~~Lk~I 84 (330)
+..|+ +||++++. .+...+. |++.+ ++..+.. ...+ .+...++++|++++++.+++++++++ ...+||+|
T Consensus 3 s~~~~-~il~~e~~--~~~~~~~--l~~~g~~v~~~~~--~~~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvV 74 (406)
T KOG0068|consen 3 SADMR-KILVAESL--DQACIEI--LKDNGYQVEFKKN--LSLE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVV 74 (406)
T ss_pred CCCcc-eEEEeccc--chHHHHH--HHhcCceEEEecc--CCHH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEE
Confidence 45665 89999988 6666767 88877 4443332 2234 45566789999999999999999999 55689999
Q ss_pred EEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEE
Q 020160 85 VATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIV 164 (330)
Q Consensus 85 ~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIi 164 (330)
.+.++|+||+|+++|.++||.|.|+|.+|+.++||+++++++++.|++.+....+|+|.|++. -.+|.+++|||+||+
T Consensus 75 grag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~--~~~G~el~GKTLgvl 152 (406)
T KOG0068|consen 75 GRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRV--KYLGWELRGKTLGVL 152 (406)
T ss_pred EecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeec--ceeeeEEeccEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999875 246999999999999
Q ss_pred ecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcE
Q 020160 165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240 (330)
Q Consensus 165 G~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai 240 (330)
|+|+||+.+|++++++||+|++||+...... +.+ ..+++|++..||||++|+|++|+|++|++.+.|++||+|..
T Consensus 153 G~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVr 231 (406)
T KOG0068|consen 153 GLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQ-LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVR 231 (406)
T ss_pred ecccchHHHHHHHHhcCceEEeecCCCchHHHHhccce-eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcE
Confidence 9999999999999999999999998754432 223 56999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC---CcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020160 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV---PEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFF 317 (330)
Q Consensus 241 lIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~ 317 (330)
+||++||++||+.||++||++|+++||++|||+.||.. ...|.++|||++|||+|++|.|++.+++..+++++..|.
T Consensus 232 iIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~ 311 (406)
T KOG0068|consen 232 IINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYI 311 (406)
T ss_pred EEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999976 357999999999999999999999999999999999999
Q ss_pred cCCCCCCCcc
Q 020160 318 SNKPLLTPFA 327 (330)
Q Consensus 318 ~g~~~~~~v~ 327 (330)
+| .....||
T Consensus 312 ~~-~~~g~Vn 320 (406)
T KOG0068|consen 312 NG-NSAGSVN 320 (406)
T ss_pred cc-Cccceec
Confidence 98 3443343
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-65 Score=487.25 Aligned_cols=274 Identities=18% Similarity=0.350 Sum_probs=251.1
Q ss_pred hhccCCceEEEEcCCCCCCHHHHccCC--CcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHh
Q 020160 53 TLHAHSVKAIFSSAGAPVTAEILRLLP--EVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR 130 (330)
Q Consensus 53 ~~~~~~~d~ii~~~~~~~~~~~l~~~~--~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R 130 (330)
.+.++++|++++....++++++++++| +||+|++.|+|+|+||+++|+++||.|+|+|++++++||||++++||++.|
T Consensus 40 ~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R 119 (330)
T PRK12480 40 VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVR 119 (330)
T ss_pred HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHH
Confidence 566789999998766789999999998 899999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCC-CCCCCCHHHHhhc
Q 020160 131 KLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT-YPFYPDVCELAAN 209 (330)
Q Consensus 131 ~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-~~~~~~l~ell~~ 209 (330)
++..+++.+++|.|.... ...+++|+|++|||||+|.||+.+|++|++|||+|++|++++..... .....++++++++
T Consensus 120 ~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~ 198 (330)
T PRK12480 120 RFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKD 198 (330)
T ss_pred hHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhc
Confidence 999999999999763221 12477899999999999999999999999999999999998654322 2234589999999
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC----------C
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV----------P 279 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~ 279 (330)
||+|++|+|++++|+++++++.|++||+|++|||+|||.+||+++|+++|++|+|+||+||||++||+. +
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~ 278 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDID 278 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999952 1
Q ss_pred ----cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160 280 ----EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFA 327 (330)
Q Consensus 280 ----~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 327 (330)
++||++|||++|||+|++|.+++.++.+.+++|+.+|++|++..+.|+
T Consensus 279 ~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 330 (330)
T PRK12480 279 DKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN 330 (330)
T ss_pred chhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 269999999999999999999999999999999999999999999875
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=4.7e-65 Score=486.47 Aligned_cols=312 Identities=21% Similarity=0.304 Sum_probs=269.7
Q ss_pred CCCCeEEEecCCCCcccccchHhhhccCeEEE-eccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCC--cceeE
Q 020160 9 VQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLK-AYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPE--VRLVV 85 (330)
Q Consensus 9 ~~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~--Lk~I~ 85 (330)
+||++++++.+. .....+. +.+.+++.. ...... .++. .+.++++|+++++..+++++++++++|+ ||+|+
T Consensus 1 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~-~~e~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~ 74 (332)
T PRK08605 1 MTKIKIMSVRDE--DAPYIKA--WAEKHHVEVDLTKEAL-TDDN-VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIA 74 (332)
T ss_pred CcEEEEEecCHH--HHHHHHH--HHHhcCeEEEEecCCC-CHHH-HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEE
Confidence 488889998876 4455555 545455432 222222 2333 3566899999987778999999999997 99999
Q ss_pred EcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEe
Q 020160 86 ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVG 165 (330)
Q Consensus 86 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG 165 (330)
+.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.... ...+++|+|++|||||
T Consensus 75 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG 153 (332)
T PRK08605 75 QRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIG 153 (332)
T ss_pred EcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccccc-ccccceeCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999874221 1247899999999999
Q ss_pred cChHHHHHHHHH-HhCCCEEEEECCCCCCCC--CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEE
Q 020160 166 LGSIGSEVAKRL-EAFGCCVSYNSRNKKPSV--TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242 (330)
Q Consensus 166 ~G~IG~~~A~~l-~~~G~~V~~~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI 242 (330)
+|.||+++|++| ++|||+|.+||++..... ......++++++++||+|++|+|.++.|+++++++.++.||+|++||
T Consensus 154 ~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailI 233 (332)
T PRK08605 154 TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFV 233 (332)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEE
Confidence 999999999999 789999999998765321 22334589999999999999999999999999999999999999999
Q ss_pred EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC--CCc------------ccccCCceEEcCCCCCCCHHHHHHHHHH
Q 020160 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD--VPE------------QLFALDNVVLSPHSAVFTPESFKDVCEL 308 (330)
Q Consensus 243 N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~------------~L~~~~nvilTPHia~~t~~~~~~~~~~ 308 (330)
|+|||.++|+++|+++|++|+|+||+||||+.||. +.+ +||++|||++|||+||+|.+++.++.+.
T Consensus 234 N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~ 313 (332)
T PRK08605 234 NCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVD 313 (332)
T ss_pred ECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999983 211 4999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCcc
Q 020160 309 AVANLEAFFSNKPLLTPFA 327 (330)
Q Consensus 309 ~~~nl~~~~~g~~~~~~v~ 327 (330)
+++|+.+|++|++..|.|+
T Consensus 314 ~~~n~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 314 ALDATLEVLQTGTTRLRVN 332 (332)
T ss_pred HHHHHHHHHcCCCCCCCcC
Confidence 9999999999999998875
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.4e-62 Score=461.39 Aligned_cols=268 Identities=46% Similarity=0.773 Sum_probs=246.4
Q ss_pred eEEEEcCCCCCCHHHHccC-CCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHH
Q 020160 60 KAIFSSAGAPVTAEILRLL-PEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCF 138 (330)
Q Consensus 60 d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~ 138 (330)
.++.+......+.+.+.+. |+||+|+++|+|+||||+++|++|||.|+|+|+.+.++|||++++++|.++|++...+++
T Consensus 63 ~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~ 142 (336)
T KOG0069|consen 63 IAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM 142 (336)
T ss_pred eeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3444444456777777766 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-C---CCCCCCHHHHhhcCCEEE
Q 020160 139 VRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-T---YPFYPDVCELAANSDVLI 214 (330)
Q Consensus 139 ~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~---~~~~~~l~ell~~aDvV~ 214 (330)
+++|+|.....++.|..+.||||||+|+|+||+.+|+||++||+.+.|+.|++.... . .....++++++.+||+|+
T Consensus 143 ~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~iv 222 (336)
T KOG0069|consen 143 VRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIV 222 (336)
T ss_pred hhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEE
Confidence 999999655556778999999999999999999999999999988999999776432 1 122569999999999999
Q ss_pred EeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCC
Q 020160 215 ICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHS 294 (330)
Q Consensus 215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHi 294 (330)
+|||+|++|+|+||++.|.+||+|++|||++||.++|++++++||++|+|+||+||||++||.++++|+.++||++|||+
T Consensus 223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHi 302 (336)
T KOG0069|consen 223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHI 302 (336)
T ss_pred EecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999767799999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160 295 AVFTPESFKDVCELAVANLEAFFSNKPLLTPFA 327 (330)
Q Consensus 295 a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 327 (330)
|+.|.+++.+|+..++.|+.+++.|+++.++++
T Consensus 303 gs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 303 GSATLETREKMAEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence 999999999999999999999999999988775
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=9.5e-61 Score=460.36 Aligned_cols=276 Identities=22% Similarity=0.342 Sum_probs=238.0
Q ss_pred eEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCC
Q 020160 13 QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN 92 (330)
Q Consensus 13 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 92 (330)
||++.... +...+. +++.+++........+. +.++++|++++++.+++++++++ .|+||+|+++++|+|
T Consensus 2 kIl~d~~~---~~~~~~--~~~~~ev~~~~~~~~~~-----~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D 70 (378)
T PRK15438 2 KILVDENM---PYAREL--FSRLGEVKAVPGRPIPV-----AQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTD 70 (378)
T ss_pred EEEEeCCc---chHHHH--HhhcCcEEEeCCCCCCH-----HHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECccccc
Confidence 57777655 222333 55556765432222221 23578999999888899999996 699999999999999
Q ss_pred CCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHH
Q 020160 93 HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSE 172 (330)
Q Consensus 93 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~ 172 (330)
|||+++++++||.|+|+||+|+.+||||++++||++.|+. +.+|+||||||||+|+||+.
T Consensus 71 ~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~--------------------g~~L~gktvGIIG~G~IG~~ 130 (378)
T PRK15438 71 HVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD--------------------GFSLHDRTVGIVGVGNVGRR 130 (378)
T ss_pred ccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC--------------------CCCcCCCEEEEECcCHHHHH
Confidence 9999999999999999999999999999999999999861 34689999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCcc----ccccccHHHHhcCCCCcEEEEcCCCc
Q 020160 173 VAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQ----THHLINKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 173 ~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~----t~~li~~~~l~~mk~gailIN~~rg~ 248 (330)
+|++|++|||+|++||+..........+.++++++++||+|++|+|+|++ |++||+++.|++||+|++|||+|||+
T Consensus 131 vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~ 210 (378)
T PRK15438 131 LQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA 210 (378)
T ss_pred HHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCch
Confidence 99999999999999997543222112356899999999999999999996 99999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160 249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321 (330)
Q Consensus 249 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~ 321 (330)
+||++||+++|++|++.||+||||++||.++.+||..++ |+|||+||+|.+...++..++++|+.+|+ |.+
T Consensus 211 vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~ 281 (378)
T PRK15438 211 VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE 281 (378)
T ss_pred hcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence 999999999999999999999999999977778988776 99999999999999999999999999999 544
No 20
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=7.7e-61 Score=450.91 Aligned_cols=256 Identities=29% Similarity=0.395 Sum_probs=228.9
Q ss_pred CCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHH
Q 020160 57 HSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAAD 136 (330)
Q Consensus 57 ~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~ 136 (330)
.++|++++.. . +..+++||||++.|+|+|+||+++|++++|.++|. |.++.+||||++++||+++|++..++
T Consensus 33 ~~a~~~~~~~-~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~ 104 (303)
T PRK06436 33 YDAEAILIKG-R------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENN 104 (303)
T ss_pred CCCCEEEecC-C------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHH
Confidence 4678886543 1 23468999999999999999999999988877775 78999999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCC-CCCCHHHHhhcCCEEEE
Q 020160 137 CFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP-FYPDVCELAANSDVLII 215 (330)
Q Consensus 137 ~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~-~~~~l~ell~~aDvV~l 215 (330)
+.+++|.|... .+.+|+|||+||||+|+||+.+|+++++|||+|++|+++.... +.. ...++++++++||+|++
T Consensus 105 ~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~ 179 (303)
T PRK06436 105 YNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLI 179 (303)
T ss_pred HHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEE
Confidence 99999999643 3578999999999999999999999999999999999975432 222 25689999999999999
Q ss_pred eccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCC
Q 020160 216 CCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295 (330)
Q Consensus 216 ~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia 295 (330)
|+|+|++|+++|+++.|++||+|++|||+|||+++|+++|+++|++|++.||+||||++||++++. .+|||++|||++
T Consensus 180 ~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~ 257 (303)
T PRK06436 180 SLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVA 257 (303)
T ss_pred CCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccc
Confidence 999999999999999999999999999999999999999999999999999999999999975543 689999999986
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHcCCCCCCCccC
Q 020160 296 V-FTPESFKDVCELAVANLEAFFSNKPLLTPFAA 328 (330)
Q Consensus 296 ~-~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~ 328 (330)
| .|.++..++.+.+++||.+|++|++ .|.|+.
T Consensus 258 g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 258 GGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence 4 8899999999999999999999987 677765
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=3.1e-61 Score=455.81 Aligned_cols=262 Identities=23% Similarity=0.321 Sum_probs=233.4
Q ss_pred CCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhH-----HhhcCcEEEeCCC-CchhhHHHHHHHHHHHHHh
Q 020160 57 HSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVE-----CRRRGVALANAGN-VFSEDVADYALGLLIDVLR 130 (330)
Q Consensus 57 ~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~l~L~~~R 130 (330)
.++|+++++. .+.+.++ .|+||||++.|+|+|++|.+. +..+||.|+|+++ .++.+||||++++||++.|
T Consensus 37 ~~a~~~~~~~---~~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r 112 (312)
T PRK15469 37 DPADYALVWH---PPVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR 112 (312)
T ss_pred ccCeEEEEeC---CChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence 5789988864 2567776 589999999999999998322 3458999999864 6899999999999999999
Q ss_pred chHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCC---CCCCCHHHHh
Q 020160 131 KLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY---PFYPDVCELA 207 (330)
Q Consensus 131 ~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~ell 207 (330)
++..+.+.+++|.|... .+.+++|+||||||+|.||+.+|++|++|||+|.+|+++++...+. ....++++++
T Consensus 113 ~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 113 RFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred ChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 99999999999999642 2457999999999999999999999999999999999876543221 1245899999
Q ss_pred hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCC
Q 020160 208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALD 286 (330)
Q Consensus 208 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~ 286 (330)
++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. +|||++|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875 4899999
Q ss_pred ceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccC
Q 020160 287 NVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAA 328 (330)
Q Consensus 287 nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~ 328 (330)
||++|||+||+|.++ ++.+.+.+|+++|++|+++.|.|+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 999999999999874 6889999999999999999999985
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.5e-60 Score=456.91 Aligned_cols=278 Identities=22% Similarity=0.321 Sum_probs=240.0
Q ss_pred eEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCC
Q 020160 13 QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN 92 (330)
Q Consensus 13 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 92 (330)
||++-+..++ ..+. +++..++... ... . ...+.++++|++++++.+++++++++. |+||||++.++|+|
T Consensus 2 kI~~d~~~p~---~~~~--~~~~~~v~~~-~~~-~---~~~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D 70 (381)
T PRK00257 2 KIVADENIPL---LDAF--FAGFGEIRRL-PGR-A---FDRAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTD 70 (381)
T ss_pred EEEEecCchh---HHHH--HhhCCcEEEc-CCc-c---cCHHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCcccc
Confidence 6777777632 2222 4444454432 211 1 112345789999998888999999985 89999999999999
Q ss_pred CCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHH
Q 020160 93 HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSE 172 (330)
Q Consensus 93 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~ 172 (330)
|||+++++++||.|+|+||+|+.+||||+++++|++.|+ .+.+++||||||||+|+||+.
T Consensus 71 ~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~--------------------~g~~l~gktvGIIG~G~IG~~ 130 (381)
T PRK00257 71 HLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER--------------------EGVDLAERTYGVVGAGHVGGR 130 (381)
T ss_pred ccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc--------------------cCCCcCcCEEEEECCCHHHHH
Confidence 999999999999999999999999999999999999875 134689999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCc----cccccccHHHHhcCCCCcEEEEcCCCc
Q 020160 173 VAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTD----QTHHLINKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 173 ~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~----~t~~li~~~~l~~mk~gailIN~~rg~ 248 (330)
+|+++++|||+|++||+......+...+.++++++++||+|++|+|+|+ .|++||+++.|++||+|++|||+|||+
T Consensus 131 va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~ 210 (381)
T PRK00257 131 LVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGA 210 (381)
T ss_pred HHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCc
Confidence 9999999999999999865432222335689999999999999999999 599999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 020160 249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322 (330)
Q Consensus 249 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~ 322 (330)
+||++||+++|++|++.||+||||++||.++++||+. |+++|||+||+|.++..++.+++++|+.+|+.+...
T Consensus 211 vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~ 283 (381)
T PRK00257 211 VVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR 283 (381)
T ss_pred ccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999766789985 999999999999999999999999999999988753
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=7.9e-49 Score=343.60 Aligned_cols=173 Identities=40% Similarity=0.620 Sum_probs=151.2
Q ss_pred HHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC
Q 020160 122 LGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY 197 (330)
Q Consensus 122 l~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~ 197 (330)
+++||++.|++..+++.+++|.|. ......+++++|+||||||+|+||+.+|+++++|||+|++|+++..... ..
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~-~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWA-SRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHH-HHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCC-CCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence 589999999999999999999991 1112357899999999999999999999999999999999999886432 11
Q ss_pred CCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC
Q 020160 198 PFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD 277 (330)
Q Consensus 198 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 277 (330)
..+.+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+++||+||||++||.
T Consensus 80 ~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 159 (178)
T PF02826_consen 80 VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL 159 (178)
T ss_dssp EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence 23569999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc-ccccCCceEEcCCCC
Q 020160 278 VPE-QLFALDNVVLSPHSA 295 (330)
Q Consensus 278 ~~~-~L~~~~nvilTPHia 295 (330)
+.. |||++|||++|||+|
T Consensus 160 ~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 160 PADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp STTHHHHTSTTEEEESS-T
T ss_pred CCCChHHcCCCEEEeCccC
Confidence 765 999999999999987
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=100.00 E-value=5.5e-33 Score=259.02 Aligned_cols=259 Identities=23% Similarity=0.364 Sum_probs=229.0
Q ss_pred cCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHH
Q 020160 56 AHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAA 135 (330)
Q Consensus 56 ~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~ 135 (330)
+.++-+-+.+....++++-+++++-||++...+.|+|++|+.+|.+.||.|||.|+..-+.+|+-+++.+|.++|+....
T Consensus 71 Lneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~ 150 (435)
T KOG0067|consen 71 LNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWL 150 (435)
T ss_pred HHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchh
Confidence 34444444455678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCC----CC-CccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC----CCCCCCCCCHHHH
Q 020160 136 DCFVRQGLWPINAE----FP-LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP----SVTYPFYPDVCEL 206 (330)
Q Consensus 136 ~~~~~~g~W~~~~~----~~-~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~~~~~~l~el 206 (330)
.+.+++|.|.+... .. -....+|.++|++|+|+.|++++.++++||+.|+.||+.... ..+.++..+++|+
T Consensus 151 cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~ 230 (435)
T KOG0067|consen 151 CQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDL 230 (435)
T ss_pred hhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchh
Confidence 99999999854311 11 134589999999999999999999999999999999987543 2355566689999
Q ss_pred hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC--CCccccc
Q 020160 207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD--VPEQLFA 284 (330)
Q Consensus 207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~~L~~ 284 (330)
+.++|.+++||.++++++++|+.-.++.|+.|++++|++||.++|+.+|.++|++|++.|++ |. ...+|.+
T Consensus 231 ~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d 303 (435)
T KOG0067|consen 231 LYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKD 303 (435)
T ss_pred hhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999988 22 2247899
Q ss_pred CCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160 285 LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321 (330)
Q Consensus 285 ~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~ 321 (330)
.||.|+|||.++++..+..++.+.++-.+++-..|.-
T Consensus 304 ~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~i 340 (435)
T KOG0067|consen 304 APNLICTPHTAWYSEAASVELREVAALEIRRAITGRI 340 (435)
T ss_pred CCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCC
Confidence 9999999999999999999999999999998887763
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.89 E-value=2.2e-22 Score=167.86 Aligned_cols=101 Identities=26% Similarity=0.378 Sum_probs=82.1
Q ss_pred EEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCC
Q 020160 14 VLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNH 93 (330)
Q Consensus 14 vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 93 (330)
||++.++ .+...+. |++.+++... . .. ..+.+.+.++++|+++++..+++++++++.+|+||||++.|+|+|+
T Consensus 1 ili~~~~--~~~~~~~--l~~~~~v~~~-~-~~-~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 73 (133)
T PF00389_consen 1 ILITDPL--PDEEIER--LEEGFEVEFC-D-SP-SEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDN 73 (133)
T ss_dssp EEESSS---SHHHHHH--HHHTSEEEEE-S-SS-SHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTT
T ss_pred eEEeccC--CHHHHHH--HHCCceEEEe-C-CC-CHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCc
Confidence 6788887 5667767 8886765443 3 22 3445566778999999987767999999999999999999999999
Q ss_pred CChhHHhhcCcEEEeCCCCchhhHHHHH
Q 020160 94 IDVVECRRRGVALANAGNVFSEDVADYA 121 (330)
Q Consensus 94 id~~~~~~~gI~v~n~~~~~~~~vAE~a 121 (330)
||+++|+++||.|+|+||+++.+||||+
T Consensus 74 id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 74 IDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp B-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred ccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999999999
No 26
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.87 E-value=3.1e-21 Score=189.69 Aligned_cols=167 Identities=18% Similarity=0.296 Sum_probs=136.1
Q ss_pred EEcCCCCCCCC-hhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEE
Q 020160 85 VATSAGLNHID-VVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGI 163 (330)
Q Consensus 85 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgI 163 (330)
=-+++|+..+- ++.....+|+|+|+|++++.+++|+++++++++. +..+|.+ +..+.|++++|
T Consensus 196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~----------~~~LaGKtVgV 259 (476)
T PTZ00075 196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT----------DVMIAGKTVVV 259 (476)
T ss_pred ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc----------CCCcCCCEEEE
Confidence 34577876652 2222336899999999999999999999999988 3344443 23689999999
Q ss_pred EecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCC
Q 020160 164 VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK 238 (330)
Q Consensus 164 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g 238 (330)
+|+|.||+.+|+++++||++|+++++++... .++. ..++++++++||+|++|+ .++++|+++.|+.||+|
T Consensus 260 IG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpG 334 (476)
T PTZ00075 260 CGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNN 334 (476)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECC----CcccccCHHHHhccCCC
Confidence 9999999999999999999999997765432 1222 357999999999999984 47889999999999999
Q ss_pred cEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q 020160 239 GVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP 279 (330)
Q Consensus 239 ailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~ 279 (330)
++|||+||+ |++.++++|+++. ++||++.||...
T Consensus 335 AiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 335 AIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred cEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 999999999 7888889998754 689999999654
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.83 E-value=2e-20 Score=175.42 Aligned_cols=162 Identities=20% Similarity=0.229 Sum_probs=132.8
Q ss_pred cCCceEEEEc----------------CCCCCCHHHHccCCCcceeEEcCCCCCCCChh-HHhhcCcEEE------eCCCC
Q 020160 56 AHSVKAIFSS----------------AGAPVTAEILRLLPEVRLVVATSAGLNHIDVV-ECRRRGVALA------NAGNV 112 (330)
Q Consensus 56 ~~~~d~ii~~----------------~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~~~~ 112 (330)
++++|++|.. ...++++++++.+| .++...+|+++.|++ +|+++||.|+ |++.+
T Consensus 52 ~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~ 128 (287)
T TIGR02853 52 LTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIY 128 (287)
T ss_pred hccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEE
Confidence 4677877762 12346789999988 377788899999998 9999999999 89999
Q ss_pred chhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 113 FSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 113 ~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
|+.++||.++.+++.. .+.+++|++++|+|+|.||+.+|++|+++|++|++++|++.
T Consensus 129 n~~~~Ae~ai~~al~~-----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 129 NSIPTAEGAIMMAIEH-----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred ccHhHHHHHHHHHHHh-----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 9999999999887732 12368899999999999999999999999999999999865
Q ss_pred CC-----CCCC--CCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160 193 PS-----VTYP--FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 193 ~~-----~~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~ 248 (330)
.. .+.. ...++.++++++|+|++|+|.+ +++++.++.||+++++||++...
T Consensus 186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 32 1221 2346778899999999999874 67888999999999999998743
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.65 E-value=3.8e-15 Score=140.50 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=128.1
Q ss_pred hccCCceEEEEcCC----------------CCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCC-----
Q 020160 54 LHAHSVKAIFSSAG----------------APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNV----- 112 (330)
Q Consensus 54 ~~~~~~d~ii~~~~----------------~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~----- 112 (330)
+.++++|+|+..-. ..++++.++.+|+...+. .|.+.++++ +.|.++||.+.+....
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 34578999886411 124788999999997444 599999988 8899999999987754
Q ss_pred -chhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 113 -FSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 113 -~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
++.++||.++.+++. + .+.+++|++++|+|+|.+|+.+++.|+.+|++|.++++++
T Consensus 129 ~ns~~~aegav~~a~~---~--------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 129 LNSIPTAEGAIMMAIE---H--------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred hccHhHHHHHHHHHHH---h--------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 888999987765431 0 1234789999999999999999999999999999999986
Q ss_pred CCC-----CCCC--CCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160 192 KPS-----VTYP--FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 192 ~~~-----~~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r 246 (330)
... .+.. ...++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 186 ~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 186 AHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 431 1222 224677889999999999874 3678899999999999999985
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.63 E-value=7.9e-16 Score=151.30 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=101.2
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
.+.|++++|+|+|.||+.+|+++++||++|+++++++... .++. ..+++++++.+|+|+. +..++++++.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~----tTGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVT----TTGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEE----CCCCccchHH
Confidence 4799999999999999999999999999999998876431 1332 3478899999999987 4567889999
Q ss_pred HHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCceEEEEecCCCCC
Q 020160 230 QVLLALGKKGVIINVGR-GAIIDEKEMVGC--LLRGEIGGAGLDVFENEP 276 (330)
Q Consensus 230 ~~l~~mk~gailIN~~r-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~EP 276 (330)
+.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +.+|+|+.|=
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 9999998 9999999753
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.52 E-value=4e-14 Score=138.11 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=99.2
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
.+.|++++|+|+|.||+.+|++++++|++|+++++++... .++ ...+++++++.+|+|+.++ .+.++|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaT----G~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITAT----GNKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence 4789999999999999999999999999999998776432 133 2346788999999998754 36788999
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCceEEEEecCCC
Q 020160 230 QVLLALGKKGVIINVGRGAI-IDEKEMVGCLLRGEIGGAGLDVFEN 274 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~-vd~~aL~~aL~~g~i~ga~lDV~~~ 274 (330)
+.+..||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999999888878899999884
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.50 E-value=4.6e-14 Score=132.80 Aligned_cols=88 Identities=24% Similarity=0.284 Sum_probs=75.4
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 228 (330)
..|+||||||||+|+||+++|++|+++|++|+++++..... .+.. ..++++++++||+|++|+|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 35899999999999999999999999999999887653321 1332 34899999999999999997 67799999
Q ss_pred HHHHhcCCCCcEEEE
Q 020160 229 KQVLLALGKKGVIIN 243 (330)
Q Consensus 229 ~~~l~~mk~gailIN 243 (330)
.+.++.||+|++|+-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999998875
No 32
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.41 E-value=8e-13 Score=123.14 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=102.7
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQ 230 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~ 230 (330)
++||+||+|.||..+|++|...|+.|.+|||++.+. .+.....+..|+.+++|+|++|+|.+++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 489999999999999999999999999999998762 2556678889999999999999999999998874 56
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe--cCCCCC
Q 020160 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD--VFENEP 276 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD--V~~~EP 276 (330)
.++.+|||.++||+|+.+......+.+.++++.+. .+| |....+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDAPVsGg~~ 126 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDAPVSGGVP 126 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEecCccCCch
Confidence 89999999999999999999999999999999886 566 555544
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.40 E-value=1.9e-13 Score=117.89 Aligned_cols=111 Identities=23% Similarity=0.365 Sum_probs=89.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc-HHHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN-KQVL 232 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~-~~~l 232 (330)
++|||||+|.||+.+|++|...|++|.+||++++.. .+.....++.|++++||+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 689999999999999999999999999999986542 2445578999999999999999999888887753 2278
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV 271 (330)
Q Consensus 233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV 271 (330)
+.+++|.++||++..+.-....+.+.+.+..+. .+|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 889999999999999999999999999887764 5664
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.35 E-value=2.7e-12 Score=126.04 Aligned_cols=178 Identities=17% Similarity=0.255 Sum_probs=121.4
Q ss_pred CceEEEEcCCCCCCHHHHccCC----Ccc-eeEEcCCCCCCC-ChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhc
Q 020160 58 SVKAIFSSAGAPVTAEILRLLP----EVR-LVVATSAGLNHI-DVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRK 131 (330)
Q Consensus 58 ~~d~ii~~~~~~~~~~~l~~~~----~Lk-~I~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~ 131 (330)
+.++|+=.+ ..+..-+-...| +++ .+=-+++|+..+ .+....+.+++|.|++..+..+.-|...+.-.+....
T Consensus 123 ~p~iiiDdG-gdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~a 201 (425)
T PRK05476 123 GPNMILDDG-GDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDG 201 (425)
T ss_pred CCCEEEecc-cHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHH
Confidence 456666443 233332323333 333 234568888775 2333345689999999888877555433322222211
Q ss_pred hHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHH
Q 020160 132 LSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCEL 206 (330)
Q Consensus 132 ~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el 206 (330)
+ .+. .+..+.|++++|+|+|.||+.+|++++++|++|+++++++.... ++. ..+++++
T Consensus 202 i------~ra----------t~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~ea 264 (425)
T PRK05476 202 I------KRA----------TNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEA 264 (425)
T ss_pred H------HHh----------ccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHH
Confidence 1 111 02247899999999999999999999999999999998765421 222 3478899
Q ss_pred hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020160 207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-IDEKEMVG 257 (330)
Q Consensus 207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~-vd~~aL~~ 257 (330)
++.+|+|+.++ .+.++|+.+.+..||+|++++|+|+... +|.++|.+
T Consensus 265 l~~aDVVI~aT----G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 265 AELGDIFVTAT----GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 99999998764 4567899999999999999999999876 77777754
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.30 E-value=7e-12 Score=117.81 Aligned_cols=106 Identities=14% Similarity=0.227 Sum_probs=89.4
Q ss_pred eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccc-c-HHHH
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLI-N-KQVL 232 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li-~-~~~l 232 (330)
+|||||+|.||+.+|+.+...|++|.+|++++... .+.....+..+++++||+|++|+|.++.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 58999999999999999999999999999986532 133345688899999999999999888877664 3 3467
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
..+++|.++||++++...+..++.+.++++.+.
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 789999999999999998889999999887654
No 36
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.29 E-value=7.5e-12 Score=117.78 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=95.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV 231 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~ 231 (330)
++|||||+|.||+.+|+.+...|++|.+||+++... .+.....++++++++||+|++++|.+..++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999986532 1333456888999999999999999888887763 346
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 020160 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP 276 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 276 (330)
++.+++|.++||+++.......++.+.+.+..+...---|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 788999999999999998888899999988766433233555444
No 37
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.25 E-value=2.2e-11 Score=115.07 Aligned_cols=109 Identities=19% Similarity=0.287 Sum_probs=92.9
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhc---CCEEEEeccCCccccccccHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAAN---SDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~---aDvV~l~~P~t~~t~~li~~~ 230 (330)
++|||||+|.||+.+|++|...|++|.+||+++... .+.....++++++++ +|+|++++|..+.++.+++ +
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence 379999999999999999999999999999976431 234446688898876 6999999998878888774 6
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 020160 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD 270 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD 270 (330)
.+..+++|.++||+|+....+..++.+.+.+..+. .+|
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 77889999999999999999999999999887764 577
No 38
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.25 E-value=2.1e-11 Score=115.10 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=94.1
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV 231 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~ 231 (330)
++|||||+|.||..+|+.|...|++|.+||+++... .+.....+..+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 479999999999999999999999999999987542 2344466888999999999999998877777654 346
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV 271 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV 271 (330)
+..+++|.++||++++.....+.+.+.+.+..+. .+|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7789999999999999999999999999998875 4663
No 39
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.19 E-value=7.1e-11 Score=112.49 Aligned_cols=116 Identities=26% Similarity=0.267 Sum_probs=84.7
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
..++|++|||||+|+||+++|+.|+.+|++|+++++..... .+.. ..+..+++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 35899999999999999999999999999998776653321 1333 34889999999999999997765 6777
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc
Q 020160 228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE 280 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~ 280 (330)
+++.++.|++|++| -.+.|--+ ..+ . ..-+...||+-..|..|.
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G~~i--~~~----~--~~p~~~~~Vi~vaPn~Pg 134 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHGFNI--HFG----Q--IVPPADVDVIMVAPKGPG 134 (330)
T ss_pred HHHHHhcCCCCCEE-EECCCCCh--hhc----e--eccCCCCcEEEeCCCCCc
Confidence 67888999999988 55555211 111 0 111345678877775443
No 40
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.17 E-value=4.6e-11 Score=102.24 Aligned_cols=99 Identities=19% Similarity=0.365 Sum_probs=70.3
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 228 (330)
..+.||++.|+|||.+|+.+|++|+++|++|++++..|-.. .++. ..++++++.++|+++.++- ...++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence 35899999999999999999999999999999999876432 2443 3479999999999887643 356788
Q ss_pred HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020160 229 KQVLLALGKKGVIINVGRGAI-IDEKEMVG 257 (330)
Q Consensus 229 ~~~l~~mk~gailIN~~rg~~-vd~~aL~~ 257 (330)
.+.|++||+|+++.|++.... +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999987544 55555443
No 41
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.17 E-value=9.9e-11 Score=110.69 Aligned_cols=110 Identities=24% Similarity=0.263 Sum_probs=92.9
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhc---CCEEEEeccCCccccccccHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAAN---SDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~---aDvV~l~~P~t~~t~~li~~~ 230 (330)
++|||||+|.||+.+|++|...|++|.+||++++.. .+.....+++++++. +|+|++++|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 479999999999999999999999999999986532 234445688888876 699999999887777776 36
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV 271 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV 271 (330)
.+..+++|.++||++++.......+.+.+++..+. .+|.
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 77889999999999999999999999999988875 5673
No 42
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.15 E-value=1.1e-10 Score=116.84 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=99.7
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCC---CCCCHHHHhhc---CCEEEEeccCCccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYP---FYPDVCELAAN---SDVLIICCALTDQT 223 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~---~~~~l~ell~~---aDvV~l~~P~t~~t 223 (330)
.+|||||+|.||+.+|++|...|++|.+|||++++.. +.. ...+++|+.+. +|+|++++|..+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 3799999999999999999999999999999865321 222 45688998876 99999999999999
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 020160 224 HHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP 276 (330)
Q Consensus 224 ~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 276 (330)
+.++ ...++.+++|.++||+|....-+...+.+.+++..+.....=|+..++
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 9888 468899999999999999999999999999999988755555666655
No 43
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.09 E-value=3.1e-10 Score=107.01 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=91.2
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH--HHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK--QVL 232 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l 232 (330)
++|||||+|.||..+|+.|...|++|.+|++++... .+.....+..+++++||+|++++|..+..+..+.. ..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 379999999999999999999999999998876421 13444568889999999999999988887776532 357
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV 271 (330)
Q Consensus 233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV 271 (330)
+.+++|.++|+++....-....+.+.+.+..+. .+|.
T Consensus 81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 778999999999999988888999999887664 5664
No 44
>PLN02256 arogenate dehydrogenase
Probab=99.08 E-value=1.1e-09 Score=103.82 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=91.5
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHh-hcCCEEEEeccCCccccccccHH
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELA-ANSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~ 230 (330)
-++++|||||+|.||+.+|+.++..|++|.+++++.... .+.....++++++ .++|+|++|+|.. .+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence 367899999999999999999999999999999875321 1333456777876 4799999999964 566666432
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC----cccccCCceEEcCCC
Q 020160 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP----EQLFALDNVVLSPHS 294 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~----~~L~~~~nvilTPHi 294 (330)
....+++++++++++.++-+..+++.+.+..+. .+...-|... ...+...+++++|..
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~ 174 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVYDKVR 174 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEEecce
Confidence 256789999999999976555666666654321 1222333211 134555667777754
No 45
>PLN02712 arogenate dehydrogenase
Probab=99.06 E-value=2.7e-10 Score=118.34 Aligned_cols=108 Identities=18% Similarity=0.308 Sum_probs=84.4
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhh-cCCEEEEeccCCccccccc
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAA-NSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~-~aDvV~l~~P~t~~t~~li 227 (330)
+.++.+++|||||+|.||+.+|+.++.+|++|.+|+++.... .+.....++++++. .+|+|++|+|. ..+..++
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi 442 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL 442 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence 667899999999999999999999999999999999875321 13334567888776 59999999995 5777777
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160 228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
.+-....||+|++++|++.++-...+++.+.+..
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 6544457999999999999885555555555544
No 46
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.01 E-value=1e-09 Score=109.58 Aligned_cols=117 Identities=20% Similarity=0.259 Sum_probs=97.4
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------C--CCCCCCHHHHhh---cCCEEEEeccCCcccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------T--YPFYPDVCELAA---NSDVLIICCALTDQTH 224 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~--~~~~~~l~ell~---~aDvV~l~~P~t~~t~ 224 (330)
.+|||||+|.||+.+|++|...|++|.+|||+++... + .....+++++++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 4799999999999999999999999999999876410 2 123568889886 5899999999999999
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 020160 225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP 276 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 276 (330)
.++ .+.+..+++|.++||++.+..-|...+.+.+.+..+.....=|...++
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 888 467888999999999999999999999999999988744444555443
No 47
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.00 E-value=1.6e-09 Score=102.30 Aligned_cols=109 Identities=18% Similarity=0.256 Sum_probs=88.3
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHh---hcCCEEEEeccCCccccccccHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELA---ANSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell---~~aDvV~l~~P~t~~t~~li~~~ 230 (330)
++|||||+|.||..+|+.|...|++|.+|||++... .+.....+++++. .++|+|++++|.. .++.++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 479999999999999999999999999999986542 1223335666654 5689999999987 777777 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV 271 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV 271 (330)
..+.+++|.++||++.+...+...+.+.+++..+. .+|.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 77889999999999999989999999999887765 4553
No 48
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.99 E-value=1.5e-09 Score=106.50 Aligned_cols=99 Identities=18% Similarity=0.292 Sum_probs=80.9
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 228 (330)
..+.|++++|+|+|.||+.+|++++++|++|+++++++... .++. ..++++.++.+|+|+.+. .+.++++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~at----G~~~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTT----GNKDIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECC----CCHHHHH
Confidence 35789999999999999999999999999999998876542 2332 235678889999998764 2456788
Q ss_pred HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020160 229 KQVLLALGKKGVIINVGRGAI-IDEKEMVG 257 (330)
Q Consensus 229 ~~~l~~mk~gailIN~~rg~~-vd~~aL~~ 257 (330)
.+.+..||+|++++|+|++.+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 77777664
No 49
>PLN02858 fructose-bisphosphate aldolase
Probab=98.97 E-value=1.6e-09 Score=120.20 Aligned_cols=115 Identities=19% Similarity=0.124 Sum_probs=97.5
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccc--cH
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLI--NK 229 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~ 229 (330)
..++||+||+|.||..+|++|...|++|.+||+++... .+.....+..|+.++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 46789999999999999999999999999999987642 245567899999999999999999999988886 34
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160 230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV 271 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV 271 (330)
..++.+++|.++|++|+...-....+.+.+.+..-....+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 578889999999999999999999999999887611135664
No 50
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.94 E-value=2.5e-09 Score=99.04 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=96.4
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc-
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN- 228 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~- 228 (330)
..+.++||+||+|.||..++..|-..|++|++|||+.+.. .+.....+..|+.+.||+|+.++|...+.+.++.
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g 111 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG 111 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence 3468899999999999999999999999999999987653 3566678999999999999999999999888774
Q ss_pred -HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 020160 229 -KQVLLALGKKGVI-INVGRGAIIDEKEMVGCLLRGEIGGAGLD 270 (330)
Q Consensus 229 -~~~l~~mk~gail-IN~~rg~~vd~~aL~~aL~~g~i~ga~lD 270 (330)
...|+..++|... |+.+.-+.--...|.++++..... .+|
T Consensus 112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD 153 (327)
T KOG0409|consen 112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD 153 (327)
T ss_pred CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence 3467778888776 899887777778899999888765 566
No 51
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.94 E-value=6.1e-09 Score=103.45 Aligned_cols=136 Identities=20% Similarity=0.300 Sum_probs=95.7
Q ss_pred ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
++|+||| +|.||+.+|+.++..|++|.++++++... .+.....+..+.+.+||+|++++|.. .+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799998 89999999999999999999999876431 13333457788899999999999974 445555 456
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC--CCcccccCCceEEcCCCCCCCHHHHH
Q 020160 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD--VPEQLFALDNVVLSPHSAVFTPESFK 303 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~~L~~~~nvilTPHia~~t~~~~~ 303 (330)
.+.+++++++++++..+....+++.+.+..+ . .+....|. +..+++....+++||+- +.+.+...
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~-----~~V~~HPmaGp~~~~~~g~~~il~p~~-~~~~~~~~ 145 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-V-----EILPTHPMFGPRTPSLKGQVVILTPTE-KRSNPWFD 145 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-C-----EEEEcCCCCCCCCcccCCCEEEEecCC-CCCHHHHH
Confidence 7789999999999986655555666555432 1 12222332 22357777899999965 23344333
No 52
>PLN02858 fructose-bisphosphate aldolase
Probab=98.93 E-value=2.4e-09 Score=118.91 Aligned_cols=112 Identities=22% Similarity=0.154 Sum_probs=94.6
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccc--cH
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLI--NK 229 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~ 229 (330)
+.++|||||+|.||..+|++|...|++|.+||+++... .+.....+..+++++||+|++|+|..++++.++ +.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 34889999999999999999999999999999986542 133345789999999999999999999888887 34
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc--CCceEEEEe
Q 020160 230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLR--GEIGGAGLD 270 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~--g~i~ga~lD 270 (330)
..++.+++|.++||+|..+.-....+.+.+.+ ..+. .+|
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD 443 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD 443 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence 57888999999999999998888899999988 5554 555
No 53
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.92 E-value=2.1e-09 Score=100.97 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=86.8
Q ss_pred EEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHHHhcC
Q 020160 163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQVLLAL 235 (330)
Q Consensus 163 IiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~l~~m 235 (330)
|||+|.||..+|+.|...|++|.+|++++... .+.....++.+++++||+|++|+|..+.++.++. ...++.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999986532 1334456889999999999999998777777762 4567789
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 020160 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD 270 (330)
Q Consensus 236 k~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD 270 (330)
++|.++||++..+.-....+.+.+.+..+. .+|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 999999999987777777888888876664 566
No 54
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.89 E-value=7.2e-09 Score=96.97 Aligned_cols=137 Identities=21% Similarity=0.243 Sum_probs=86.3
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-CCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTY-PFYPDVCELAANSDVLIICCALTDQTHHLINKQVL 232 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~-~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l 232 (330)
++|||||+|.||+.+|..|+..|++|.+|++++... .+. ....+..+.+++||+|++|+|..... .++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~-~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLL-PPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHH-HHH-HHHH
Confidence 479999999999999999999999999999875431 121 11222235688999999999965443 333 5667
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE-ecCCCCCC-CC---cccccCCceEEcCCCCCCCHHHH
Q 020160 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL-DVFENEPD-VP---EQLFALDNVVLSPHSAVFTPESF 302 (330)
Q Consensus 233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l-DV~~~EP~-~~---~~L~~~~nvilTPHia~~t~~~~ 302 (330)
..+++++++++++.-+. . ..+++........+. =++..|.. .. ..|+.-.++++||+-.+ +.+..
T Consensus 79 ~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~-~~~~~ 148 (279)
T PRK07417 79 PALPPEAIVTDVGSVKA---P-IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT-DLNAL 148 (279)
T ss_pred HhCCCCcEEEeCcchHH---H-HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC-CHHHH
Confidence 77899999999987543 2 233332221111111 12222211 00 13777889999997543 34433
No 55
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.89 E-value=1e-08 Score=96.53 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=75.9
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------------C------------CCCCCCHHHHhhcC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------------T------------YPFYPDVCELAANS 210 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------------~------------~~~~~~l~ell~~a 210 (330)
++|||||+|.||..+|+.+...|++|++||+++.... + .....+..+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 6899999999999999999999999999998764310 0 01122223568999
Q ss_pred CEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHc
Q 020160 211 DVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~ 261 (330)
|+|+.|+|..++.+..+-++..+.++++++|+ |+|.-. ...+.+.+..
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~ 133 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR 133 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC
Confidence 99999999999888777677777899999886 776654 4456666543
No 56
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.88 E-value=6.7e-09 Score=98.52 Aligned_cols=83 Identities=24% Similarity=0.323 Sum_probs=69.2
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh-cC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL-AL 235 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~-~m 235 (330)
.+++|||||+|.||+.+|++|...|++|.+|+|+.. .++.++++++|+|++++|. +..+.+++ .... .+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l~~~~~ 72 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAE-QVQALNL 72 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HHHHhcC
Confidence 467999999999999999999999999999998753 4688999999999999997 47777763 2323 47
Q ss_pred CCCcEEEEcCCCcc
Q 020160 236 GKKGVIINVGRGAI 249 (330)
Q Consensus 236 k~gailIN~~rg~~ 249 (330)
+++.++|++++|-.
T Consensus 73 ~~~~ivi~~s~gi~ 86 (308)
T PRK14619 73 PPETIIVTATKGLD 86 (308)
T ss_pred CCCcEEEEeCCccc
Confidence 88999999988543
No 57
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.87 E-value=4.6e-09 Score=104.93 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=92.4
Q ss_pred eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C---C--CCCCCCHHHHh---hcCCEEEEeccCCcccccc
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V---T--YPFYPDVCELA---ANSDVLIICCALTDQTHHL 226 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~---~--~~~~~~l~ell---~~aDvV~l~~P~t~~t~~l 226 (330)
.|||||+|.||+.+|++|...|++|.+|+|++... . + .....++.++. +++|+|++++|..+.++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 48999999999999999999999999999986532 1 1 22345777766 4699999999998888888
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCC
Q 020160 227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE 275 (330)
Q Consensus 227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 275 (330)
+ .+.+..+++|.++||++....-|...+.+.+.+..+.....=|...+
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 7 46778899999999999999999999999999888863333344443
No 58
>PLN02712 arogenate dehydrogenase
Probab=98.84 E-value=1.5e-08 Score=105.41 Aligned_cols=103 Identities=21% Similarity=0.373 Sum_probs=75.9
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHh-hcCCEEEEeccCCccccccccHH
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELA-ANSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~ 230 (330)
-+.++|||||+|.||+.+|+.++.+|++|.+++++.... .+.....++++++ .++|+|++|+|. ..+..++..-
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 455799999999999999999999999999999874321 1333455778866 569999999996 4677777654
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020160 231 VLLALGKKGVIINVGRGAIIDEKEMVGCL 259 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL 259 (330)
.+..++++++++|+++-+..--+++.+.+
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l 157 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYL 157 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence 34679999999999765522223344444
No 59
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.83 E-value=2.1e-08 Score=95.00 Aligned_cols=141 Identities=19% Similarity=0.297 Sum_probs=90.0
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC-----CCC--CCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS-----VTY--PFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~-----~~~--~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
..++|+|||+|.||..+|+.++..|. +|.++++++... .+. ....++++.+++||+|++++|... +..++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~ 83 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA 83 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH
Confidence 34789999999999999999998885 899999876421 121 123567788999999999999643 33333
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec---CCCC---CCC-CcccccCCceEEcCCCCCCCHH
Q 020160 228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV---FENE---PDV-PEQLFALDNVVLSPHSAVFTPE 300 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV---~~~E---P~~-~~~L~~~~nvilTPHia~~t~~ 300 (330)
++....++++.++++++..+.--.+++.+.+.. .+. .+.. +..| |.. ..+|+.-.++++||+-++ +.+
T Consensus 84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~ 158 (307)
T PRK07502 84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPA 158 (307)
T ss_pred -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHH
Confidence 455667899999999977542222233333222 221 2332 2222 111 125777788999996543 444
Q ss_pred HHH
Q 020160 301 SFK 303 (330)
Q Consensus 301 ~~~ 303 (330)
+..
T Consensus 159 ~~~ 161 (307)
T PRK07502 159 AVA 161 (307)
T ss_pred HHH
Confidence 443
No 60
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.80 E-value=1.4e-08 Score=96.58 Aligned_cols=92 Identities=24% Similarity=0.267 Sum_probs=68.4
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC-CC-----CCCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK-KP-----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~-~~-----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
|+||+|||||+|+||+++|+.|+.+|++|+++++.. .. ..+.. ..+..+++++||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 579999999999999999999999999987654432 22 11332 34688899999999999996533 334445
Q ss_pred HHHhcCCCCcEEEEcCCCccc
Q 020160 230 QVLLALGKKGVIINVGRGAII 250 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~v 250 (330)
+....++++. +|.++-|--+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6778888886 7888777543
No 61
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.79 E-value=1.6e-08 Score=100.16 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=90.8
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCC----------------CCCCHHHHhhcCCEEEEecc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYP----------------FYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~----------------~~~~l~ell~~aDvV~l~~P 218 (330)
++|||||+|.||..+|..+.. |++|++||+++.... +.. ...+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 789999999999999999877 799999999875411 111 12233457899999999999
Q ss_pred CCc------ccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCceE-EEEecCCCCCCCCc----cc
Q 020160 219 LTD------QTHHLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCL-LR--GEIGG-AGLDVFENEPDVPE----QL 282 (330)
Q Consensus 219 ~t~------~t~~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL-~~--g~i~g-a~lDV~~~EP~~~~----~L 282 (330)
... +.+.++. ....+.+++|.++|+.|.-.+-..+.++..+ ++ |...+ ...=+|.+||..+. .+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 763 3344442 4567889999999999998887777654444 33 22211 11114678887543 47
Q ss_pred ccCCceEE
Q 020160 283 FALDNVVL 290 (330)
Q Consensus 283 ~~~~nvil 290 (330)
.+.|+++.
T Consensus 166 ~~~~riv~ 173 (425)
T PRK15182 166 TNIKKITS 173 (425)
T ss_pred cCCCeEEE
Confidence 77788843
No 62
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.79 E-value=3.6e-08 Score=95.57 Aligned_cols=136 Identities=23% Similarity=0.253 Sum_probs=90.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC----CCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP----FYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~----~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
++|+|||+|.||+++|+.++..|++|.++++++.... +.. ...++++++++||+|++|+|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 4799999999999999999999998888877654311 111 1346788899999999999974 5666653
Q ss_pred HHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC----------cccccCCceEEcCCCCCCC
Q 020160 230 QVLL-ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP----------EQLFALDNVVLSPHSAVFT 298 (330)
Q Consensus 230 ~~l~-~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~----------~~L~~~~nvilTPHia~~t 298 (330)
+... .+++++++++++.-+.-..+++.+.+.. ... .++.+ |... ..|+.....++||+-.. +
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~~-~ 151 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDHT-D 151 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCCC-C
Confidence 3444 4889999999988765333344333221 222 23322 3221 24777788999996433 3
Q ss_pred HHHHH
Q 020160 299 PESFK 303 (330)
Q Consensus 299 ~~~~~ 303 (330)
.+..+
T Consensus 152 ~~~~~ 156 (359)
T PRK06545 152 PDAVA 156 (359)
T ss_pred HHHHH
Confidence 44443
No 63
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.78 E-value=8.6e-08 Score=93.45 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcC
Q 020160 157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL 235 (330)
Q Consensus 157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~m 235 (330)
..++|+||| +|.||+.+|+.|+..|+.|.+|+++.. .+.++++++||+|++|+|.... ..++ ++... +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------~~~~~~~~~aDlVilavP~~~~-~~~~-~~l~~-l 165 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------DRAEDILADAGMVIVSVPIHLT-EEVI-ARLPP-L 165 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------hhHHHHHhcCCEEEEeCcHHHH-HHHH-HHHhC-C
Confidence 458999999 999999999999999999999998531 3677889999999999997753 4444 34444 8
Q ss_pred CCCcEEEEcCCCcccCHHHHHH
Q 020160 236 GKKGVIINVGRGAIIDEKEMVG 257 (330)
Q Consensus 236 k~gailIN~~rg~~vd~~aL~~ 257 (330)
++|++++++|+.+..-..++.+
T Consensus 166 ~~~~iv~Dv~SvK~~~~~~~~~ 187 (374)
T PRK11199 166 PEDCILVDLTSVKNAPLQAMLA 187 (374)
T ss_pred CCCcEEEECCCccHHHHHHHHH
Confidence 9999999998755333334443
No 64
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.78 E-value=1.2e-07 Score=91.91 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=84.9
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHh-CCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEA-FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL 233 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~ 233 (330)
+...||+|||+ |.||+.+|+.++. +|.+|+++|+... ...++++.+++||+|++|+|.... ..++ ++...
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~~~-~~~l-~~l~~ 73 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIRHT-AALI-EEYVA 73 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHHHH-HHHH-HHHhh
Confidence 35679999999 9999999999995 5899999998521 134678889999999999997643 3343 23333
Q ss_pred ---cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC---cccccCCceEEcCC
Q 020160 234 ---ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP---EQLFALDNVVLSPH 293 (330)
Q Consensus 234 ---~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~---~~L~~~~nvilTPH 293 (330)
.+++++++++++.-+- ...+++.... .++...-|.-. ..++...++++||.
T Consensus 74 ~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 74 LAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred hhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 4799999999988652 2222222221 13445556421 25788888999996
No 65
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.77 E-value=5.4e-08 Score=91.02 Aligned_cols=139 Identities=25% Similarity=0.330 Sum_probs=91.1
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-------CCCCC--CCCH-HHHhhcCCEEEEeccCCccccccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTYPF--YPDV-CELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~~~--~~~l-~ell~~aDvV~l~~P~t~~t~~li 227 (330)
-++|+|+|+|.||+.+|+.++..|+.|.++++..... .+... ..+. .+.+..||+|++++|-. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 4789999999999999999999999885555444321 12211 1222 56788899999999975 444443
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC----CcccccCCceEEcCCCCCCCHHHHH
Q 020160 228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV----PEQLFALDNVVLSPHSAVFTPESFK 303 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----~~~L~~~~nvilTPHia~~t~~~~~ 303 (330)
++....+|+|+++++++.-+---.++..+.+.++. .+...-|.- ..+++....+|+||.-... .+...
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~-~~~~~ 153 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE-KEWVE 153 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCCCC-HHHHH
Confidence 45556899999999998866444444444432211 333445542 2368888999999954333 34333
Q ss_pred HH
Q 020160 304 DV 305 (330)
Q Consensus 304 ~~ 305 (330)
++
T Consensus 154 ~~ 155 (279)
T COG0287 154 EV 155 (279)
T ss_pred HH
Confidence 33
No 66
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.76 E-value=5.5e-08 Score=96.08 Aligned_cols=143 Identities=19% Similarity=0.214 Sum_probs=93.9
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC--CCCCCHHHHh---------------hcCCEEEEec
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY--PFYPDVCELA---------------ANSDVLIICC 217 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~--~~~~~l~ell---------------~~aDvV~l~~ 217 (330)
++|+|||+|.||..+|..|...|++|++||+++.... +. .....+++++ +.||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 6899999999999999999999999999998765321 11 1123455443 3799999999
Q ss_pred cCC------ccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce-------EEEEe---cCCCCCCCC
Q 020160 218 ALT------DQTHHLI--NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG-------GAGLD---VFENEPDVP 279 (330)
Q Consensus 218 P~t------~~t~~li--~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~-------ga~lD---V~~~EP~~~ 279 (330)
|.. ++...+. -......+++|+++|+.|.-..-..+.+...+.+.... |.+.| ++.+|-..+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~ 163 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLP 163 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCC
Confidence 964 1222222 14567778999999999998877777777767653221 11223 455555433
Q ss_pred c----ccccCCceEEcCCCCCCCHHHHHHHH
Q 020160 280 E----QLFALDNVVLSPHSAVFTPESFKDVC 306 (330)
Q Consensus 280 ~----~L~~~~nvilTPHia~~t~~~~~~~~ 306 (330)
. .+...+.++ ||.+.++.+++.
T Consensus 164 G~~~~~~~~~~~vv-----gG~~~~~~~~~~ 189 (415)
T PRK11064 164 GQVMVELIKNDRVI-----GGMTPVCSARAS 189 (415)
T ss_pred CChhhhhcCCCEEE-----EeCCHHHHHHHH
Confidence 2 345555553 565666555443
No 67
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.74 E-value=3.4e-08 Score=92.79 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=80.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------C-----------------CCCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------T-----------------YPFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------~-----------------~~~~~~l~ell~~ 209 (330)
++|+|||+|.||..+|..+...|++|++||+++.... + .....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5899999999999999999999999999998754311 0 1123567789999
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEecC
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVI-INVGRGAIIDEKEMVGCLLRGEIGGAGLDVF 272 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gail-IN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~ 272 (330)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|... ...+.+.++. .-.-.++..|
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence 99999999988766554444566778999876 7887744 4556665533 2223466666
No 68
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.74 E-value=4.4e-08 Score=92.07 Aligned_cols=80 Identities=24% Similarity=0.366 Sum_probs=67.7
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||+++|||.| .||+.+|.+|...|++|++|++.. .++.++.++||+|+++++..+ ++....
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------~~l~e~~~~ADIVIsavg~~~----~v~~~~ 220 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------TDAKALCRQADIVVAAVGRPR----LIDADW 220 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhcCCEEEEecCChh----cccHhh
Confidence 456899999999996 999999999999999999997653 278999999999999998653 455443
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
+|+|+++||+|--.
T Consensus 221 ---ik~GaiVIDvgin~ 234 (301)
T PRK14194 221 ---LKPGAVVIDVGINR 234 (301)
T ss_pred ---ccCCcEEEEecccc
Confidence 89999999998644
No 69
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.72 E-value=1.8e-08 Score=98.78 Aligned_cols=96 Identities=23% Similarity=0.271 Sum_probs=72.0
Q ss_pred CCCCCCCCCC-ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC------CC-----CCCCCCCCCHHHHhhcC
Q 020160 143 LWPINAEFPL-GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK------KP-----SVTYPFYPDVCELAANS 210 (330)
Q Consensus 143 ~W~~~~~~~~-~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~------~~-----~~~~~~~~~l~ell~~a 210 (330)
-|.+. .++. -..|+||||+|||+|++|++-|..|+..|.+|++--|.. +. ..++. ..+++|++++|
T Consensus 21 ~~~r~-ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-v~~~~Ea~~~A 98 (487)
T PRK05225 21 FMDRD-EFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQA 98 (487)
T ss_pred ecchh-hccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCc-cCCHHHHHHhC
Confidence 36443 3433 246999999999999999988877888888777433321 11 12333 46899999999
Q ss_pred CEEEEeccCCccccccccHHHHhcCCCCcEEE
Q 020160 211 DVLIICCALTDQTHHLINKQVLLALGKKGVII 242 (330)
Q Consensus 211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailI 242 (330)
|+|++.+|.+ . ++.+.++.++.||+|+.|.
T Consensus 99 DvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 99 DLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred CEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence 9999999999 3 6777799999999999875
No 70
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.72 E-value=1.1e-07 Score=87.99 Aligned_cols=99 Identities=21% Similarity=0.315 Sum_probs=75.1
Q ss_pred ceEEEEecChHHHHHHHHHHhCCC----EEEEE-CCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGC----CVSYN-SRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 228 (330)
++|||||+|.||.++++.|...|+ +|+++ +|++... .+.....+..+++++||+|++++| .+..+.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 479999999999999999998887 88888 8765432 234445678888999999999996 556666653
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160 229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
+....++++.++|++.-| +..+.+.+.+..
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 455667889999988665 466666665543
No 71
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.70 E-value=1.3e-07 Score=88.27 Aligned_cols=127 Identities=19% Similarity=0.276 Sum_probs=80.9
Q ss_pred ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC-----CCCC-CCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS-----VTYP-FYPDVCELAANSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~-----~~~~-~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 230 (330)
++|+|||+|.||+.+|+.|+..|. +|.++++++... .+.. ...+.+++. +||+|++|+|.....+ ++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~-~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIE-IL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHH-HH-HH
Confidence 479999999999999999998785 788999875431 1221 234666765 5999999999764433 33 45
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC---C---CCCC-cccccCCceEEcCCC
Q 020160 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN---E---PDVP-EQLFALDNVVLSPHS 294 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~---E---P~~~-~~L~~~~nvilTPHi 294 (330)
..+ ++++++++++|.- ...+.+.+.+.. .+..++.... | |... ..+++-..++++|.-
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~ 142 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVE 142 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence 556 8899999997552 344555554421 1112333222 1 2111 136666678888853
No 72
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.66 E-value=2.8e-07 Score=86.55 Aligned_cols=137 Identities=16% Similarity=0.210 Sum_probs=90.7
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------------------------CCCCCCCHHHHhh
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------------------------TYPFYPDVCELAA 208 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------------------~~~~~~~l~ell~ 208 (330)
++|+|||.|.||..+|..+...|.+|+.+|++++... ......++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998754200 0112457888899
Q ss_pred cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCce
Q 020160 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNV 288 (330)
Q Consensus 209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nv 288 (330)
.||+|+.++|...+.+.-+-++..+.++++++++..+++ +....+.+.+.... ...++-. ..|.+.++.+
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~lv 153 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNNTA 153 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCeE
Confidence 999999999976554443334566678888888543333 34456666654322 2233321 2345567888
Q ss_pred EEcCCCCCCCHHHHHHHH
Q 020160 289 VLSPHSAVFTPESFKDVC 306 (330)
Q Consensus 289 ilTPHia~~t~~~~~~~~ 306 (330)
.+.|+-. .+.++.+.+.
T Consensus 154 evv~~~~-t~~~~~~~~~ 170 (287)
T PRK08293 154 EIMGHPG-TDPEVFDTVV 170 (287)
T ss_pred EEeCCCC-CCHHHHHHHH
Confidence 8888644 3444444443
No 73
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.66 E-value=1.6e-07 Score=89.59 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=79.7
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------C---------CCCCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------V---------TYPFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~---------~~~~~~~l~ell~~aDvV 213 (330)
++|||||.|.||..+|..+...|++|..||++++.. . ......++++.++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 689999999999999999999999999999875421 0 012346788999999999
Q ss_pred EEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 214 ~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
+-++|.+.+.+.-+-++.-+.++++++| .++..+ +...++.+.++.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~ 133 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH 133 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC
Confidence 9999999998887778888889999854 444433 466777777743
No 74
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.65 E-value=1.9e-07 Score=92.06 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=87.3
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CCCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------------------T-YPFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~ell~~aDvV 213 (330)
++|||||+|.||..+|..|...|++|++||+++.... + .....++.+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 4799999999999999999999999999998764210 1 12234677889999999
Q ss_pred EEeccCCccc------ccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHH-HHHc--CCceEEEEec---CCCCCCCC
Q 020160 214 IICCALTDQT------HHLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVG-CLLR--GEIGGAGLDV---FENEPDVP 279 (330)
Q Consensus 214 ~l~~P~t~~t------~~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~-aL~~--g~i~ga~lDV---~~~EP~~~ 279 (330)
++|+|..... ..+.. ....+.+++|.++|+.|.-.+=..+.+.. .+++ |.. .+.|. +.+|...+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~--~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK--LGEDFYLAYNPEFLRE 158 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC--CCCCceEEECCCcCCC
Confidence 9999965431 11211 34566789999999998755555566654 4444 211 12332 24444332
Q ss_pred c----ccccCCceEEc
Q 020160 280 E----QLFALDNVVLS 291 (330)
Q Consensus 280 ~----~L~~~~nvilT 291 (330)
. .++..+.+++.
T Consensus 159 G~~~~~~~~~~~iv~G 174 (411)
T TIGR03026 159 GNAVHDLLNPDRIVGG 174 (411)
T ss_pred CChhhhhcCCCEEEEe
Confidence 2 35666777765
No 75
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.65 E-value=4.5e-08 Score=95.26 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=72.6
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCC---C---CCCHHHHhhcCCEEEEeccCC-c
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYP---F---YPDVCELAANSDVLIICCALT-D 221 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~---~---~~~l~ell~~aDvV~l~~P~t-~ 221 (330)
.+.++++.|+|+|.+|+.+++.++.+|++|.++|+++... .+.. . ..++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 3678899999999999999999999999999999875321 1110 1 134677889999999998653 2
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 020160 222 QTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 222 ~t~~li~~~~l~~mk~gailIN~~ 245 (330)
.+..+++++.++.||+++++||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 345688999999999999999987
No 76
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.65 E-value=2.5e-08 Score=85.18 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=62.5
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------CCCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
|+||+|+|||||.-|++-|..|+..|.+|++-.+...+ ..++. ..+..|..++||+|++.+|...+ ..+..+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~~q-~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDEVQ-PEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HHHH-HHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChHHH-HHHHHH
Confidence 67999999999999999999999999999887776552 12433 45899999999999999996544 345667
Q ss_pred HHHhcCCCCcEEEE
Q 020160 230 QVLLALGKKGVIIN 243 (330)
Q Consensus 230 ~~l~~mk~gailIN 243 (330)
+....||+|..|+=
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 88889999998764
No 77
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.64 E-value=1.7e-08 Score=78.78 Aligned_cols=85 Identities=28% Similarity=0.411 Sum_probs=62.4
Q ss_pred eEEEEecChHHHHHHHHHHhCC---CEEE-EECCCCCCCC------CCCCCC-CHHHHhhcCCEEEEeccCCcccccccc
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFG---CCVS-YNSRNKKPSV------TYPFYP-DVCELAANSDVLIICCALTDQTHHLIN 228 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G---~~V~-~~~~~~~~~~------~~~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~ 228 (330)
||||||+|+||+++++.+...| .+|. +++|+++... +..... +..+++++||+|++++|.. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 7999999999999999999999 8998 5588775421 222233 7899999999999999854 333342
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 020160 229 KQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 229 ~~~l~~mk~gailIN~~rg 247 (330)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 233 666789999998644
No 78
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.63 E-value=1.9e-07 Score=87.88 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=77.4
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CCCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------------T-------------YPFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~ell~~ 209 (330)
++|+|||.|.||..+|..+...|++|.+||++++... + .....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999999999998754210 1 11234554 5789
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHc-CCceEEEEecCC
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFE 273 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~ 273 (330)
||+|+.++|...+.+..+-++..+.++++++++ |+|.-. ...+.+.+.. .++ .++-.|.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~~r~--~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRPERF--IGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCcccE--EEeeccC
Confidence 999999999877655444356777889999988 666544 3467776632 233 3455555
No 79
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.62 E-value=8.4e-08 Score=90.81 Aligned_cols=106 Identities=21% Similarity=0.318 Sum_probs=84.8
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
-+.||++.|.|||..|+-+|++++++|++|++....|-.. .++. ...++|....+|+++.++ .++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~T----GnkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTAT----GNKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEcc----CCcCccCH
Confidence 3799999999999999999999999999999987766442 2333 457899999999998764 56789999
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHHH-HHcCCce
Q 020160 230 QVLLALGKKGVIINVGRGAI-IDEKEMVGC-LLRGEIG 265 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~-vd~~aL~~a-L~~g~i~ 265 (330)
+.|..||+|+++-|.|.-.+ ||...|.+. ++...++
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr 318 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR 318 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence 99999999999999997666 666665532 3333444
No 80
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.5e-07 Score=84.67 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=95.2
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHH---hhcCCEEEEeccCCccccccccHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCEL---AANSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el---l~~aDvV~l~~P~t~~t~~li~~~ 230 (330)
+++|+||+|+||..+++++..-|.+|++||+++... .+.....|++++ +...-+|.+++|....|...|+ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 579999999999999999999999999999987642 244445677776 4567899999999988887764 6
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 020160 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFE 273 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~ 273 (330)
.-..|.+|-++|+-+....-|....++.|.++.|. .+||=.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence 77889999999999999999999999999999995 789843
No 81
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.61 E-value=1.7e-07 Score=87.54 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=68.8
Q ss_pred ccccCCceEEEEecChH-HHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLGSI-GSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||.|.+ |+.+|..|...|++|+.+... ..++.+.+++||+|+++++ +.++++.
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~-- 217 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTA-- 217 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence 44689999999999999 999999999999999887542 2468899999999999998 3467887
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 020160 232 LLALGKKGVIINVGRGAI 249 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~ 249 (330)
+.+|+|+++||+|.-.+
T Consensus 218 -~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 218 -DMVKPGATVIDVGMNRD 234 (285)
T ss_pred -HHcCCCCEEEEcccccc
Confidence 56899999999997553
No 82
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.58 E-value=4.7e-07 Score=84.75 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=72.2
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~ 209 (330)
++|+|||+|.||..+|..+...|++|+++|+++... .+ .....+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999765432 01 01123444 4799
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~ 260 (330)
||+|+.++|...+.+.-+-++..+.++++++++....| +....+.+.+.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~ 131 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK 131 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence 99999999977665543435566778999988444333 55667888774
No 83
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.57 E-value=3e-07 Score=79.75 Aligned_cols=113 Identities=23% Similarity=0.322 Sum_probs=84.3
Q ss_pred cccCCceEEEEecChH-HHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160 154 SKLGGKRVGIVGLGSI-GSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL 232 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l 232 (330)
.++.|+++.|||.|.+ |..+|+.|...|.+|...+|+. .++.+.+.++|+|+.+++.. + +|..+.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~---~-ii~~~~- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP---G-LVKGDM- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC---c-eecHHH-
Confidence 3589999999999996 8889999999999998888752 46888999999999998754 2 677764
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299 (330)
Q Consensus 233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 299 (330)
++++.++||+|...-+| ..++++. -|| ..| ...+. ...+||=-||...
T Consensus 106 --~~~~~viIDla~prdvd-------~~~~~~~---G~~-d~~-----~~~~~-~~~~~~~pggvgp 153 (168)
T cd01080 106 --VKPGAVVIDVGINRVPD-------KSGGKLV---GDV-DFE-----SAKEK-ASAITPVPGGVGP 153 (168)
T ss_pred --ccCCeEEEEccCCCccc-------ccCCCee---CCc-CHH-----HHHhh-ccCcCCCCCcChH
Confidence 57899999999988887 4555654 333 111 11222 4457776677654
No 84
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.56 E-value=3e-07 Score=86.53 Aligned_cols=79 Identities=20% Similarity=0.377 Sum_probs=66.3
Q ss_pred cccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEEC-CCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 154 SKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNS-RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~-~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
.++.||+++||| .|.||+.+|.+|...|+.|++|+ ++. ++++++++||+|+++++... ++.+..
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~ 219 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW 219 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence 468999999999 99999999999999999999995 432 57899999999999998654 344433
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 020160 232 LLALGKKGVIINVGRGAI 249 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~ 249 (330)
+|+|+++||+|--.+
T Consensus 220 ---lk~GavVIDvGin~~ 234 (296)
T PRK14188 220 ---IKPGATVIDVGINRI 234 (296)
T ss_pred ---ecCCCEEEEcCCccc
Confidence 899999999986543
No 85
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.55 E-value=3.1e-07 Score=81.98 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=78.5
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCCCCHHHHhh-cCCEEEEeccCCccccc
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFYPDVCELAA-NSDVLIICCALTDQTHH 225 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~ell~-~aDvV~l~~P~t~~t~~ 225 (330)
+.+++||+++|+|+|+||+.+|++|..+|++|+++|+++.... +.. ..+.++++. +||+++.|.. .+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~l~~~~~Dv~vp~A~-----~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPEEIYSVDADVFAPCAL-----GG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcchhhccccCCEEEeccc-----cc
Confidence 3468999999999999999999999999999999998764311 222 123455554 7999886654 35
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
+|+++.++.|+ ..+++.-+-+.+-| ..-.+.|++..+.
T Consensus 97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 78888888887 45788888887766 5566777777774
No 86
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.55 E-value=3e-07 Score=77.87 Aligned_cols=105 Identities=22% Similarity=0.225 Sum_probs=77.5
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC------CC----CCCCCHHHHhhcCCEEEEeccCCcc-
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV------TY----PFYPDVCELAANSDVLIICCALTDQ- 222 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~------~~----~~~~~l~ell~~aDvV~l~~P~t~~- 222 (330)
++.+++++|+|+|.||+.+++.+...| .+|.+++++++... +. ....+..++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 356899999999999999999999886 78999998764321 11 1245677788999999999998764
Q ss_pred ccc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160 223 THH-LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI 264 (330)
Q Consensus 223 t~~-li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i 264 (330)
... .+.. ..++++.+++|++..+... .+.+.+++..+
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGA 133 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence 222 2332 2368999999998765443 77777777654
No 87
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.54 E-value=3.8e-07 Score=85.32 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=74.0
Q ss_pred CCceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCCCC-------CCCCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~-------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~ 225 (330)
.+++|||||+|.||+++|+.|...| .+|.+++|+.... .+.....+..+++.+||+|++++|.. ....
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence 3579999999999999999999887 6889999865321 13334567888899999999999954 3344
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160 226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260 (330)
Q Consensus 226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~ 260 (330)
.+ .+....++++.++|++.-| +..+.+.+.+.
T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~ 112 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ 112 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 44 4455567889999998655 35666666554
No 88
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.53 E-value=7.7e-07 Score=83.73 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=78.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------------------CC-------------CCCCCHHHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------------------TY-------------PFYPDVCEL 206 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~el 206 (330)
++|+|||.|.||..+|..+...|++|+.+|+++.... +. ....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5899999999999999999999999999998764210 00 112234 56
Q ss_pred hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCCCC
Q 020160 207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFENE 275 (330)
Q Consensus 207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~~E 275 (330)
+++||+|+.++|...+.+.-+-++.-+.++++++|++...| +....+.+.+.. .++ .++..|.+-
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~--ig~hf~~P~ 148 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERKDRF--IGMHWFNPA 148 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCcccE--EEEecCCCc
Confidence 78999999999977654433334455668889999877666 455677777643 233 455544443
No 89
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.51 E-value=3.5e-07 Score=87.49 Aligned_cols=98 Identities=20% Similarity=0.197 Sum_probs=75.1
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C--------C------CCCCCCHHHHhhcCCEEEEecc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V--------T------YPFYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~--------~------~~~~~~l~ell~~aDvV~l~~P 218 (330)
.++|+|||+|.||..+|.+|...|++|.+|+|+++.. . + .....++.+.++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4689999999999999999999999999999975421 0 1 1124578888899999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 020160 219 LTDQTHHLINKQVLLALGKKGVIINVGRG-AIID--EKEMVGCLLR 261 (330)
Q Consensus 219 ~t~~t~~li~~~~l~~mk~gailIN~~rg-~~vd--~~aL~~aL~~ 261 (330)
... + ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 762 2 5666889999999999997 3332 4456666654
No 90
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.49 E-value=2e-07 Score=87.09 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=75.4
Q ss_pred CceEEEEecChHHHHHHHHHHhCCC----EEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGC----CVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
.++|||||+|+||+++++.+...|+ +|++++|++... .+.....+..+++.+||+|++++|. ...+.++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence 3589999999999999999988774 689999876531 2333345777899999999999994 6666665
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160 228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~ 260 (330)
.+....++++.++|++.-| ++.+.|.+.+.
T Consensus 81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 3455557888999999877 55666766664
No 91
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.48 E-value=4.9e-07 Score=91.33 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=78.9
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CCCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------------------T-YPFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~ell~~aDvV 213 (330)
++|||||+|.||..+|..+...|++|++||+++.... + .....++.+.+++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5899999999999999999999999999998764310 1 23356788899999999
Q ss_pred EEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN 274 (330)
Q Consensus 214 ~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 274 (330)
+.++|...+.+..+-++.-+.++++++| .++..++ ....+.+.+..... ..++-+.+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~~~r--~~~~hP~n 141 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTHPER--LFVAHPYN 141 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCCcce--EEEEecCC
Confidence 9999988766654334455567777654 4444443 35577776644322 34554443
No 92
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.47 E-value=3.6e-07 Score=85.26 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=77.3
Q ss_pred CCceEEEEecChHHHHHHHHHHh--CCCEEE-EECCCCCCCC------C-CCCCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEA--FGCCVS-YNSRNKKPSV------T-YPFYPDVCELAANSDVLIICCALTDQTHHL 226 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~--~G~~V~-~~~~~~~~~~------~-~~~~~~l~ell~~aDvV~l~~P~t~~t~~l 226 (330)
..++|||||+|.||+.+++.+.. .++++. +++++++... + ...+.++++++.++|+|++|+|.....+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e-- 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRA-- 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHH--
Confidence 35799999999999999999986 478875 6787654321 2 2346789999999999999999653322
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
-....++.|.-++..++|.+.+.++|.++.+++...
T Consensus 83 ---~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 ---IVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred ---HHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 123335667667778899888889999988886543
No 93
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.47 E-value=1.2e-06 Score=83.21 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=83.9
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CCC-------------CCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VTY-------------PFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~~-------------~~~~~l~ell~~ 209 (330)
++|+|||.|.||..+|..+...|++|++||+++... .+. ....++.+.++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999976310 111 234578888999
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceE
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVV 289 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvi 289 (330)
||+|+.++|...+.+..+-.+.-+..++..++. .+.. ......+.+.+..... ...|-+-+ |. +-.+=+.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts-~~~~~~la~~~~~~~~--~~~~hp~~-p~-----~~~~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS-ALLASAFTEHLAGRER--CLVAHPIN-PP-----YLIPVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC-CCCHHHHHHhcCCccc--EEEEecCC-Cc-----ccCceEE
Confidence 999999999775444332233323344455444 3333 3346667777754332 34444332 21 1113366
Q ss_pred EcCCCCCCCHHHHHHH
Q 020160 290 LSPHSAVFTPESFKDV 305 (330)
Q Consensus 290 lTPHia~~t~~~~~~~ 305 (330)
++|+-++ +.++.++.
T Consensus 153 iv~~~~t-~~~~~~~~ 167 (308)
T PRK06129 153 VVPAPWT-APATLARA 167 (308)
T ss_pred EeCCCCC-CHHHHHHH
Confidence 8887443 34444443
No 94
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.46 E-value=5.4e-07 Score=84.77 Aligned_cols=112 Identities=20% Similarity=0.268 Sum_probs=79.3
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------------CC-------------CCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------------TY-------------PFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~ell~~ 209 (330)
++|||||.|.||..+|..+...|++|+.||+++.... +. ....++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 4899999999999999999999999999998875310 11 123466 55899
Q ss_pred CCEEEEeccCCccccccccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCCCC
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLAL-GKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFENE 275 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~m-k~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~~E 275 (330)
||+|+-++|.+.+.+.-+-.+.-+.+ +++++|++.+.+-.+ .++..++.. .++ .++..|.+-
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~~~r~--~g~hf~~P~ 148 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKRPGRV--LGLHFFNPV 148 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCCccE--EEEecCCCc
Confidence 99999999999888776654444444 789999887665444 444444432 233 466666643
No 95
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.45 E-value=8.8e-07 Score=89.67 Aligned_cols=112 Identities=16% Similarity=0.252 Sum_probs=83.4
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~ 209 (330)
++|||||+|.||+.+|..+...|++|+.||++++.. .+ .....++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 689999999999999999999999999999887531 11 122356655 569
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHc-CCceEEEEecCCCCC
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVI-INVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFENEP 276 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gail-IN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EP 276 (330)
||+|+-++|.+.+.+..+-.+.-..++++++| +|+|.-++ .++..++.. .++ .++..|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCcc
Confidence 99999999999888876655555567899999 59987665 366666643 333 4677777555
No 96
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.44 E-value=8.8e-07 Score=93.55 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=92.5
Q ss_pred ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCC-----CCCC--CCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPS-----VTYP--FYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~-----~~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
++|||||+|.||.++|+.++..| .+|.+++++.... .+.. ...++++.++++|+|++++|.. .++.++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 4899999876531 1221 2346788899999999999964 444443 3
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC----------CcccccCCceEEcCCCCCCCH
Q 020160 230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV----------PEQLFALDNVVLSPHSAVFTP 299 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~~~L~~~~nvilTPHia~~t~ 299 (330)
+..+.++++.++++++..+-.-.+.+.+.+.... ..+...-|.. ...|+.-.+++++|+-.+ +.
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~-~~ 155 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET-DP 155 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC-CH
Confidence 4455678899999998755333445555553321 2233333421 225888889999996543 34
Q ss_pred HHHH
Q 020160 300 ESFK 303 (330)
Q Consensus 300 ~~~~ 303 (330)
+..+
T Consensus 156 ~~~~ 159 (735)
T PRK14806 156 AALA 159 (735)
T ss_pred HHHH
Confidence 4333
No 97
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.43 E-value=6.7e-07 Score=84.80 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=69.3
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------C--------------CCCCCCHHHHhhcCCEEE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------T--------------YPFYPDVCELAANSDVLI 214 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~--------------~~~~~~l~ell~~aDvV~ 214 (330)
++|+|||+|.||..+|..+...|++|++++++..... + .....++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999999999999998653210 0 112346778899999999
Q ss_pred EeccCCcc-ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160 215 ICCALTDQ-THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260 (330)
Q Consensus 215 l~~P~t~~-t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~ 260 (330)
+++|...+ ...++ .+.-..++++++++....| +....+.+.+.
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 99997654 33343 3333446777776533333 34567777764
No 98
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.42 E-value=9.2e-07 Score=82.65 Aligned_cols=80 Identities=21% Similarity=0.395 Sum_probs=66.2
Q ss_pred ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||+++|||. |.+|+.+|.+|...|++|+.|... ..++.+..++||+|+.+++... ++....
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~~----~v~~~~ 219 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRGH----FVTKEF 219 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCccc----cCCHHH
Confidence 45689999999999 999999999999999999988321 1378899999999999998653 355443
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
+|+|+++||+|--.
T Consensus 220 ---ik~GavVIDvgin~ 233 (284)
T PRK14179 220 ---VKEGAVVIDVGMNR 233 (284)
T ss_pred ---ccCCcEEEEeccee
Confidence 89999999998544
No 99
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.41 E-value=3.5e-07 Score=86.85 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=69.1
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C--------------CCCCCCCHHHHhhcCCEEEEeccC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V--------------TYPFYPDVCELAANSDVLIICCAL 219 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~--------------~~~~~~~l~ell~~aDvV~l~~P~ 219 (330)
++|+|||+|.||..+|..|...|++|.+|++++... . +.....++++.++.||+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 479999999999999999999999999999875321 0 112245777889999999999996
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCccc
Q 020160 220 TDQTHHLINKQVLLALGKKGVIINVGRGAII 250 (330)
Q Consensus 220 t~~t~~li~~~~l~~mk~gailIN~~rg~~v 250 (330)
..++.++ .+..+.++++.++|+++.|--.
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 4556555 3456667889999999765443
No 100
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.40 E-value=8e-07 Score=89.81 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=83.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~ 209 (330)
++|||||.|.||+.+|..+...|++|+.||++++.. .+ .....++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 579999999999999999999999999999886531 01 112346655 579
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD 277 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~ 277 (330)
||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-++ ..+.+++.. .....++..|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 999999999988877765555556688888776 7766443 566776643 233467777776553
No 101
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.37 E-value=2.7e-06 Score=83.39 Aligned_cols=124 Identities=16% Similarity=0.106 Sum_probs=84.5
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------------------CCCC--CCCHHHHhhcCCEEEE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------------------TYPF--YPDVCELAANSDVLII 215 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------------------~~~~--~~~l~ell~~aDvV~l 215 (330)
++|+|||+|.||..+|..+. .|++|++||+++.... .... ..+..+..+.||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 47999999999999997766 4999999998765310 0111 1235677899999999
Q ss_pred eccCCcccc-cccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc----cc
Q 020160 216 CCALTDQTH-HLIN--------KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE----QL 282 (330)
Q Consensus 216 ~~P~t~~t~-~li~--------~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~----~L 282 (330)
|+|...+-+ +.++ ++... +++|.++|+.|.-.+=-.+.+.+.+.+..+ +|.+|...+. .+
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~ 152 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDN 152 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccc
Confidence 999652211 1111 23344 799999999999888788888887765433 2466665433 35
Q ss_pred ccCCceEE
Q 020160 283 FALDNVVL 290 (330)
Q Consensus 283 ~~~~nvil 290 (330)
...|+|++
T Consensus 153 ~~p~rvv~ 160 (388)
T PRK15057 153 LHPSRIVI 160 (388)
T ss_pred cCCCEEEE
Confidence 66667654
No 102
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.37 E-value=1.5e-07 Score=77.90 Aligned_cols=104 Identities=20% Similarity=0.321 Sum_probs=60.4
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
...+|||||.|++|..+++.|...|+.|.. ++|+.... .+.....+++|++..+|++++++|.+ ....+ -+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~v-a~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEV-AE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHH-HH
Confidence 457999999999999999999999999865 56665321 12233457889999999999999976 43433 23
Q ss_pred HHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160 230 QVLLA--LGKKGVIINVGRGAIIDEKEMVGCLLRGEI 264 (330)
Q Consensus 230 ~~l~~--mk~gailIN~~rg~~vd~~aL~~aL~~g~i 264 (330)
+.-.. .++|.+++-|| |. ...+.|..+-+.|-+
T Consensus 87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGAI 121 (127)
T ss_dssp HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-E
T ss_pred HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCCe
Confidence 33333 68999999985 22 233344444444443
No 103
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.36 E-value=2.6e-07 Score=83.15 Aligned_cols=128 Identities=14% Similarity=0.147 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHH--HhCCCEEE-EECCC
Q 020160 114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRL--EAFGCCVS-YNSRN 190 (330)
Q Consensus 114 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l--~~~G~~V~-~~~~~ 190 (330)
....++|.+..++...|++. .|. ..++++|||+|.+|+.+++.+ ...|+++. ++|++
T Consensus 60 G~~~~gy~v~~l~~~~~~~l---------~~~-----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 60 GKRGVGYNVEELLEFIEKIL---------GLD-----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CCCCCCeeHHHHHHHHHHHh---------CCC-----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 34556788888888888764 121 246899999999999999863 36788876 46665
Q ss_pred CCCCC----C--CCCCCCHHHHhhc--CCEEEEeccCCccc---cccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020160 191 KKPSV----T--YPFYPDVCELAAN--SDVLIICCALTDQT---HHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCL 259 (330)
Q Consensus 191 ~~~~~----~--~~~~~~l~ell~~--aDvV~l~~P~t~~t---~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL 259 (330)
+.... + .....++.+++++ .|.+++++|..... +.+.......-+...++.+|+.+|.+|+.++|..+|
T Consensus 120 ~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l 199 (213)
T PRK05472 120 PEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVEL 199 (213)
T ss_pred hhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHH
Confidence 43221 1 1123467787765 99999999987652 223233334446667899999999999999999988
Q ss_pred Hc
Q 020160 260 LR 261 (330)
Q Consensus 260 ~~ 261 (330)
..
T Consensus 200 ~~ 201 (213)
T PRK05472 200 QT 201 (213)
T ss_pred HH
Confidence 64
No 104
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.34 E-value=1.8e-06 Score=81.38 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=73.2
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCCC----------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160 170 GSEVAKRLEAFGCCVSYNSRNKKPS----------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239 (330)
Q Consensus 170 G~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga 239 (330)
|+.+|++|...|++|++||+++... .+.....+..+++++||+|++|+|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 7899999999999999998875421 144556789999999999999999988888887 46889999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHc
Q 020160 240 VIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 240 ilIN~~rg~~vd~~aL~~aL~~ 261 (330)
++||+|. ++.+.++..|+.
T Consensus 111 IVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred EEEECCC---CCHHHHHHHHHH
Confidence 9999966 567777777766
No 105
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.33 E-value=2.3e-06 Score=80.07 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=67.3
Q ss_pred ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.|+++.|||.|. +|+.+|..|...|++|+.+.++. .++.+.+++||+|+.+++.. +++.++
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~p----~~i~~~- 218 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGKP----GLVTKD- 218 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCCC----cccCHH-
Confidence 3468999999999998 99999999999999998887632 36889999999999999753 367765
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
.+|+|+++||+|--.
T Consensus 219 --~vk~gavVIDvGi~~ 233 (286)
T PRK14175 219 --VVKEGAVIIDVGNTP 233 (286)
T ss_pred --HcCCCcEEEEcCCCc
Confidence 468999999998654
No 106
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.31 E-value=6.8e-07 Score=76.58 Aligned_cols=87 Identities=22% Similarity=0.343 Sum_probs=63.6
Q ss_pred eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-------------CC------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------------VT------YPFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------------~~------~~~~~~l~ell~~aDvV~l~~P~t 220 (330)
+|+|+|.|++|.++|..|...|.+|..|.|+++.. .+ .....++++.++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 68999999999999999999999999999875310 01 112468999999999999999965
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~rg~ 248 (330)
. .+.++ ++....++++..+|++..|=
T Consensus 81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHHH-HHHhhccCCCCEEEEecCCc
Confidence 3 34433 45667778899999998763
No 107
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.30 E-value=1.2e-06 Score=80.85 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=72.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCE---EEEECCCCCCCC-------CCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCC---VSYNSRNKKPSV-------TYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~---V~~~~~~~~~~~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 228 (330)
++|||||+|+||+.+++.+...|.. +.+++|+.+... +.....+..+++++||+|++++| .+....++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 3799999999999999999887754 467888654311 23345678889999999999999 345555543
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160 229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g 262 (330)
. +. ++++.++|.+. .-+..+.|.+.+..+
T Consensus 80 ~--l~-~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 80 A--LR-FRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred H--hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 2 32 57888999987 347788888877654
No 108
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.28 E-value=2.7e-06 Score=75.67 Aligned_cols=86 Identities=23% Similarity=0.273 Sum_probs=65.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC--------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 230 (330)
++++|+|.|+||+.+|+++...|++|.+-+++..... ......+.++..+.+|+|++++|...... . .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~-v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD-V-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh-H-HHH
Confidence 6899999999999999999999999988765544311 11223578899999999999999865433 2 255
Q ss_pred HHhcCCCCcEEEEcCCC
Q 020160 231 VLLALGKKGVIINVGRG 247 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg 247 (330)
....+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 666565 8899998653
No 109
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.28 E-value=3.8e-07 Score=76.21 Aligned_cols=93 Identities=25% Similarity=0.303 Sum_probs=69.1
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCCCCC------C-----CCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKKPSV------T-----YPFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~~------~-----~~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
+++|+++.|||.|.+|+.++..|...|++ |+.++|+.++.. + ...+.++.+.+.++|+|+.++|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999996 999999865311 1 11245677789999999999886533
Q ss_pred ccccccHHHHhcCCCCc-EEEEcCCCccc
Q 020160 223 THHLINKQVLLALGKKG-VIINVGRGAII 250 (330)
Q Consensus 223 t~~li~~~~l~~mk~ga-ilIN~~rg~~v 250 (330)
.+.++.++..++.. ++++.+...-|
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCC
Confidence 67788877665433 88888654333
No 110
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.28 E-value=1.5e-06 Score=80.83 Aligned_cols=89 Identities=18% Similarity=0.320 Sum_probs=75.1
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 230 (330)
+.||.+.|.|+|.+|+..|+.|++||.+|++....|-.. .++. ..+++|..++.|+++.+. ..+.+|..+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~~ 286 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITGE 286 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence 789999999999999999999999999999887665432 1333 468999999999998753 567789999
Q ss_pred HHhcCCCCcEEEEcCCCcc
Q 020160 231 VLLALGKKGVIINVGRGAI 249 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~ 249 (330)
.|.+||.++++.|+|.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999987554
No 111
>PRK07680 late competence protein ComER; Validated
Probab=98.27 E-value=1.7e-06 Score=80.65 Aligned_cols=98 Identities=14% Similarity=0.295 Sum_probs=72.7
Q ss_pred ceEEEEecChHHHHHHHHHHhCCC----EEEEECCCCCCCC-------CCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGC----CVSYNSRNKKPSV-------TYPFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~~~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
++|||||+|.||+.+++.|...|. +|.+++|+++... +.....+..+++.+||+|++++|.. ....++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHH
Confidence 379999999999999999988883 7899999764311 2333457888899999999999733 345444
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160 228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~ 260 (330)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3455567888999999854 36777776654
No 112
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.25 E-value=4.4e-06 Score=78.14 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=71.5
Q ss_pred ceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCCCC-------C-CCCCCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPS-------V-TYPFYPDVCELAANSDVLIICCALTDQTHHL 226 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~-------~-~~~~~~~l~ell~~aDvV~l~~P~t~~t~~l 226 (330)
++|+|||+|.||+.+++.+...| .+|.+++++.... . ......+..+++.++|+|++++|.. ....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHH
Confidence 47999999999999999999887 6888888754221 1 1122357788899999999999943 34443
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160 227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260 (330)
Q Consensus 227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~ 260 (330)
+ .+....++++..+|.+.-| +..+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3 3344556778899998777 66778877764
No 113
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.24 E-value=1.2e-05 Score=80.87 Aligned_cols=177 Identities=16% Similarity=0.168 Sum_probs=105.3
Q ss_pred CceEEEEcCCCCCCHHHHccCC-CcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCc--h--------hhHHHHHHHHHH
Q 020160 58 SVKAIFSSAGAPVTAEILRLLP-EVRLVVATSAGLNHIDVVECRRRGVALANAGNVF--S--------EDVADYALGLLI 126 (330)
Q Consensus 58 ~~d~ii~~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~al~l~L 126 (330)
++|+|+.-. +.+.+-++.+. +--+|+...-..|.=-++++.+++|.+..-.... + .++++.+=
T Consensus 64 ~adiIlkV~--~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG---- 137 (511)
T TIGR00561 64 QSDIILKVN--APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG---- 137 (511)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH----
Confidence 467777422 23444456654 4445666555555445677888998887632111 1 13333322
Q ss_pred HHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC--
Q 020160 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF-- 199 (330)
Q Consensus 127 ~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~-- 199 (330)
+|-+.+..+.. |++..-.....| .+.+.++.|+|+|.+|...++.++.+|.+|.+++++.... .+...
T Consensus 138 --y~Avi~Aa~~l--gr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~ 212 (511)
T TIGR00561 138 --YRAIIEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE 212 (511)
T ss_pred --HHHHHHHHHHh--hhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEe
Confidence 22222211111 111100001122 4568999999999999999999999999999998876421 11110
Q ss_pred ---------------CCC----------HHHHhhcCCEEEEec--cCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160 200 ---------------YPD----------VCELAANSDVLIICC--ALTDQTHHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 200 ---------------~~~----------l~ell~~aDvV~l~~--P~t~~t~~li~~~~l~~mk~gailIN~~r 246 (330)
..+ +.+.++++|+|+.++ |..+ ...++.++.++.||+|+++||++-
T Consensus 213 v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 213 LDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred ccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 001 445578899998876 3322 235788999999999999999965
No 114
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.22 E-value=9.9e-06 Score=62.22 Aligned_cols=66 Identities=26% Similarity=0.400 Sum_probs=55.1
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhC-CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAF-GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL 233 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~ 233 (330)
.+.+++++|+|.|.+|+.+++.+... +.+|.++++ |+++.+.+.. +.+.++...
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~~----~~~~~~~~~ 74 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPAG----VPVLEEATA 74 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCCC----CCchHHHHH
Confidence 47899999999999999999999998 568888877 9999887653 345455688
Q ss_pred cCCCCcEEEEcC
Q 020160 234 ALGKKGVIINVG 245 (330)
Q Consensus 234 ~mk~gailIN~~ 245 (330)
.+++++++++++
T Consensus 75 ~~~~~~~v~~~a 86 (86)
T cd05191 75 KINEGAVVIDLA 86 (86)
T ss_pred hcCCCCEEEecC
Confidence 899999999874
No 115
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.21 E-value=2.5e-06 Score=85.22 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCCCCHHHHhhc---CCEEEEeccCCccccccccHHHHhcC
Q 020160 169 IGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFYPDVCELAAN---SDVLIICCALTDQTHHLINKQVLLAL 235 (330)
Q Consensus 169 IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~ell~~---aDvV~l~~P~t~~t~~li~~~~l~~m 235 (330)
||+.+|++|...|++|.+|||++.... +.....+++++.+. +|+|++++|..+.++.++ .+.++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999999999999876421 23456789998875 899999999999999988 4688999
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 020160 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP 276 (330)
Q Consensus 236 k~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 276 (330)
.+|.++||.|....-|...+.+.+++..+.....=|...++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999999999999999999888744444555443
No 116
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.18 E-value=1.2e-05 Score=75.87 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=94.8
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhh-cCCEEEEeccCCccccccccHHHH
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAA-NSDVLIICCALTDQTHHLINKQVL 232 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~-~aDvV~l~~P~t~~t~~li~~~~l 232 (330)
-.+|||||+|++|+-+|+.+-..|+.|..++|+.-.. .+...+..+.++++ ++|+|.+|+.. ..++.++..-=+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence 4689999999999999999999999999999976332 24455677888775 49999998753 244444433335
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CceEEEEecCCCCCCCCcccccCCceEEcCCCC
Q 020160 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRG-EIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295 (330)
Q Consensus 233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia 295 (330)
+++|.|++++++-.-+....+++.+.|-+- .|. ..=-.|.++. .++....+|=|+.-=.++
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIl-ctHpmfGPks-vnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDIL-CTHPMFGPKS-VNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceE-eecCCcCCCc-CCCccccCceEEEEeecc
Confidence 668999999999888888888888888553 222 2222334331 334566677776655444
No 117
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.13 E-value=5.2e-06 Score=73.19 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=76.8
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------------CC-------------CCCCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------------SV-------------TYPFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~-------------~~~~~~~l~ell~~aDvV 213 (330)
|+|+|||+|.+|..+|..+...|++|+++|.+++. +. ......+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 68999999999999999999999999999986542 00 011234677789999999
Q ss_pred EEeccCCcccccccc--------HHHHhcCCCCcEEEEcCCCcccCHHH-HHHHHHcCCceEEEEe-cCCCCCCCCc---
Q 020160 214 IICCALTDQTHHLIN--------KQVLLALGKKGVIINVGRGAIIDEKE-MVGCLLRGEIGGAGLD-VFENEPDVPE--- 280 (330)
Q Consensus 214 ~l~~P~t~~t~~li~--------~~~l~~mk~gailIN~~rg~~vd~~a-L~~aL~~g~i~ga~lD-V~~~EP~~~~--- 280 (330)
++|+|......+-.| ....+.++++.++|.-|.-.+=-.+. +...|++....+.-++ +|.+|=..+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999985443333222 34566789999999999877655553 3344444322111111 2456654332
Q ss_pred -ccccCCceEE
Q 020160 281 -QLFALDNVVL 290 (330)
Q Consensus 281 -~L~~~~nvil 290 (330)
++...|+||+
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 4778888853
No 118
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.11 E-value=4.2e-05 Score=64.37 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=66.5
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|+|-+ .+|+.+|.+|...|++|..++++. .++++..++||+|+.+++.. ++|+.+.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~ 89 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW 89 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence 457899999999965 679999999999999998887532 37889999999999998754 4577654
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
+|||+++||++...
T Consensus 90 ---ikpGa~Vidvg~~~ 103 (140)
T cd05212 90 ---IKPGATVINCSPTK 103 (140)
T ss_pred ---cCCCCEEEEcCCCc
Confidence 78999999998755
No 119
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=1.5e-05 Score=74.82 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=65.9
Q ss_pred ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||.|. .|+++|..|...|++|+.+++. ..++.+.+++||+|+.+++. +. +++.+.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG~-~~---~v~~~~ 220 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVGK-PE---LIKKDW 220 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccCC-CC---cCCHHH
Confidence 3468999999999998 9999999999999999988762 23688888999999999962 22 576644
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
+|+|++++|++-..
T Consensus 221 ---lk~gavViDvg~n~ 234 (283)
T PRK14192 221 ---IKQGAVVVDAGFHP 234 (283)
T ss_pred ---cCCCCEEEEEEEee
Confidence 78999999997544
No 120
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.08 E-value=2.1e-05 Score=67.59 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=58.4
Q ss_pred ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++++.+++||+|+.++.- .++|..+
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G~----~~~i~~~- 96 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVGK----PNLIKAD- 96 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SSS----TT-B-GG-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeecc----ccccccc-
Confidence 4468999999999985 99999999999999998876532 4789999999999999853 3456654
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 020160 232 LLALGKKGVIINVGRGAI 249 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~ 249 (330)
.+|+|+++||+|.-..
T Consensus 97 --~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 97 --WIKPGAVVIDVGINYV 112 (160)
T ss_dssp --GS-TTEEEEE--CEEE
T ss_pred --cccCCcEEEecCCccc
Confidence 5799999999987665
No 121
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=2.4e-05 Score=73.25 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=65.9
Q ss_pred ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||.|. +|+.+|..|...|+.|+.+.+. ..++.+.+++||+|+.+++.. +++..
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvi~avG~p----~~v~~-- 218 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------TKNLRHHVRNADLLVVAVGKP----GFIPG-- 218 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------CCCHHHHHhhCCEEEEcCCCc----ccccH--
Confidence 3468999999999999 9999999999999999887653 236899999999999998533 24655
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
+.+|+|+++||+|--.
T Consensus 219 -~~vk~gavVIDvGin~ 234 (285)
T PRK10792 219 -EWIKPGAIVIDVGINR 234 (285)
T ss_pred -HHcCCCcEEEEccccc
Confidence 4578999999998533
No 122
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.06 E-value=7.6e-06 Score=75.80 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=67.7
Q ss_pred ceEEEEecChHHHHHHHHHHhCC---CEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFG---CCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
++|+|||+|.||+.+++.+...| .+|.+++|+++.. .+.....+.++++.++|+|++++|.. ..+.++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~- 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLS- 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHH-
Confidence 58999999999999999999888 6889999976432 13334457788889999999999844 3333332
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160 230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~ 260 (330)
+....+ +.++|.+.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 222223 46778776653 5666766664
No 123
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=1.4e-05 Score=74.49 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=67.3
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.|+++.|+|.+ ..|+.+|..+..+|++|+.+.+.. .++.+.+++||+|+.+++.. +++.++.
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk~----~lv~~~~ 213 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGKA----GFITPDM 213 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCcc----cccCHHH
Confidence 346899999999999 999999999999999998775432 36889999999999999633 5788776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
+|||+++||+|-..
T Consensus 214 ---vk~GavVIDVgi~~ 227 (279)
T PRK14178 214 ---VKPGATVIDVGINQ 227 (279)
T ss_pred ---cCCCcEEEEeeccc
Confidence 49999999998644
No 124
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=2.4e-05 Score=73.26 Aligned_cols=79 Identities=27% Similarity=0.396 Sum_probs=65.6
Q ss_pred ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||.|. +|+.+|..|...|+.|+.+... ..++.+..++||+|++++--. +++..+
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvv~AvG~p----~~i~~~- 224 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------TDDLKKYTLDADILVVATGVK----HLIKAD- 224 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------CCCHHHHHhhCCEEEEccCCc----cccCHH-
Confidence 4468999999999999 9999999999999999887642 236889999999999987432 467665
Q ss_pred HhcCCCCcEEEEcCCC
Q 020160 232 LLALGKKGVIINVGRG 247 (330)
Q Consensus 232 l~~mk~gailIN~~rg 247 (330)
.+|+|+++||+|--
T Consensus 225 --~vk~gavVIDvGin 238 (287)
T PRK14176 225 --MVKEGAVIFDVGIT 238 (287)
T ss_pred --HcCCCcEEEEeccc
Confidence 57899999999863
No 125
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.00 E-value=4.8e-06 Score=72.13 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=66.2
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CC-----C---------------------CCCCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VT-----Y---------------------PFYPD 202 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~-----~---------------------~~~~~ 202 (330)
..+...++.|+|.|+.|+..++.++++|++|..++..+... .. . .+...
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 35778999999999999999999999999999988765320 00 0 00124
Q ss_pred HHHHhhcCCEEEEec-cCCccccccccHHHHhcCCCCcEEEEcC
Q 020160 203 VCELAANSDVLIICC-ALTDQTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 203 l~ell~~aDvV~l~~-P~t~~t~~li~~~~l~~mk~gailIN~~ 245 (330)
+.+.++.+|+|+.++ -..+..-.++.++.++.||++++++++|
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 677889999998644 3455677799999999999999999985
No 126
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=2.6e-05 Score=72.98 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=66.1
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-| .+|+.+|..|...|+.|+.+... ..++.+.+++||+|+.+++. .+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~---------t~~l~~~~~~ADIvV~AvG~----p~~i~~~~ 218 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL---------TKDLSFYTQNADIVCVGVGK----PDLIKASM 218 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC---------cHHHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence 446899999999999 99999999999999999887432 13578999999999999853 34677765
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
+|+|+++||+|--.
T Consensus 219 ---vk~GavVIDvGi~~ 232 (285)
T PRK14191 219 ---VKKGAVVVDIGINR 232 (285)
T ss_pred ---cCCCcEEEEeeccc
Confidence 48999999998654
No 127
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.00 E-value=7.4e-06 Score=73.94 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=62.1
Q ss_pred ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC-------------CC---CCCCCHHHHhhcCCEEEEeccCCc
Q 020160 159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------------TY---PFYPDVCELAANSDVLIICCALTD 221 (330)
Q Consensus 159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------------~~---~~~~~l~ell~~aDvV~l~~P~t~ 221 (330)
++|+||| .|.||+.+|+.|...|.+|.+++|+++... +. ....+..+.++++|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4799997 999999999999999999999988764311 11 012356778999999999999653
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCcc
Q 020160 222 QTHHLINKQVLLALGKKGVIINVGRGAI 249 (330)
Q Consensus 222 ~t~~li~~~~l~~mk~gailIN~~rg~~ 249 (330)
...++ ++.-..++ +.++|++.-|--
T Consensus 81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~ 105 (219)
T TIGR01915 81 -VLKTL-ESLRDELS-GKLVISPVVPLA 105 (219)
T ss_pred -HHHHH-HHHHHhcc-CCEEEEeccCce
Confidence 33333 22223344 589999977643
No 128
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.99 E-value=1.2e-05 Score=74.85 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=69.0
Q ss_pred ceEEEEecChHHHHHHHHHHhC--CCEE-EEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAF--GCCV-SYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V-~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
+++||||+|.||+.+++.+... ++++ .++|+++... .+...+.++++++.++|+|++|+|......
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~----- 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEE----- 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHH-----
Confidence 4899999999999999998865 5665 4678775421 123345789999899999999987433222
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 020160 230 QVLLALGKKGVIINVGRGAIIDE---KEMVGCLLRGEI 264 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~vd~---~aL~~aL~~g~i 264 (330)
-....++.|.-++..+.|.+.|. +.|.++.+++..
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~ 114 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC 114 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence 12233455666666777887764 356666666553
No 129
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.99 E-value=2.2e-05 Score=72.71 Aligned_cols=124 Identities=23% Similarity=0.397 Sum_probs=76.7
Q ss_pred CCceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL 232 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l 232 (330)
..++|||||+|+||+++++.+...| -++.+++++.... +.....+..+++.+||+|++++|. ..++.++. +..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl~-~i~ 78 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVKP-DLAGKVLL-EIK 78 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeCH-HHHHHHHH-HHH
Confidence 3478999999999999999998766 2488888865432 223345677888999999999874 45555543 333
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCC
Q 020160 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH 293 (330)
Q Consensus 233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH 293 (330)
..++++ .+|.+.-| +..+.+.+.+...+. ...+-.+-| .+...-.++++|.
T Consensus 79 ~~l~~~-~iIS~~aG--i~~~~l~~~~~~~~~---vvr~mPn~p----~~~g~g~t~i~~~ 129 (260)
T PTZ00431 79 PYLGSK-LLISICGG--LNLKTLEEMVGVEAK---IVRVMPNTP----SLVGQGSLVFCAN 129 (260)
T ss_pred hhccCC-EEEEEeCC--ccHHHHHHHcCCCCe---EEEECCCch----hHhcceeEEEEeC
Confidence 445554 44555444 335566655533221 112212111 2555566777774
No 130
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.99 E-value=8.2e-06 Score=80.76 Aligned_cols=94 Identities=23% Similarity=0.298 Sum_probs=69.5
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC------CCC--CCCCHHHHhhcCCEEEEeccCCccccc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV------TYP--FYPDVCELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~------~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~ 225 (330)
.+.|++++|+|+|.||+.+++.|+..| .+|++++|+..... +.. ...++.+.+.++|+|+.+++ .+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence 478999999999999999999999999 68999999865321 111 12456778899999999865 3455
Q ss_pred cccHHHHhcCC----CCcEEEEcCCCcccC
Q 020160 226 LINKQVLLALG----KKGVIINVGRGAIID 251 (330)
Q Consensus 226 li~~~~l~~mk----~gailIN~~rg~~vd 251 (330)
+++++.++.+. .+.++||.+...=||
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 78888777652 235888887643333
No 131
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=7.8e-05 Score=72.01 Aligned_cols=139 Identities=23% Similarity=0.270 Sum_probs=95.1
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CCCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------------------T-YPFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~ell~~aDvV 213 (330)
.+|||||+|-||-.+|-.+...|++|+++|.+++... + .....+. +.++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhcccCCEE
Confidence 7999999999999999999999999999998765311 0 0111222 345699999
Q ss_pred EEeccCCcccc-c------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC--CceEEEEecC---CCCCCCC
Q 020160 214 IICCALTDQTH-H------LIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG--EIGGAGLDVF---ENEPDVP 279 (330)
Q Consensus 214 ~l~~P~t~~t~-~------li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g--~i~ga~lDV~---~~EP~~~ 279 (330)
++|+|. |-++ + +.+ +...+.||+|.++|==|.-..=..+.++.-|.+. .+. ..-|.| .+|-..|
T Consensus 89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 999983 3322 1 111 3456779999999988887766777777777664 232 345654 5554322
Q ss_pred c----ccccCCceEEcCCCCCCCHHHHHHH
Q 020160 280 E----QLFALDNVVLSPHSAVFTPESFKDV 305 (330)
Q Consensus 280 ~----~L~~~~nvilTPHia~~t~~~~~~~ 305 (330)
. ++.+.|+| +||.|++..+.+
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e~a 191 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAELA 191 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHHHH
Confidence 2 47778888 689988654433
No 132
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.94 E-value=2.8e-05 Score=70.96 Aligned_cols=101 Identities=14% Similarity=0.213 Sum_probs=67.8
Q ss_pred CCceEEEEecChHHHHHHHHHHhCC---CE-EEEECCC-CCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFG---CC-VSYNSRN-KKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G---~~-V~~~~~~-~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~ 225 (330)
.+++|||||.|.||+.+++.+...| .+ ++.++++ ++.. .+.....+.+++++++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999997765 23 6667664 2211 13333467888999999999999954 3333
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160 226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g 262 (330)
++ ++.-..++ +.++|.++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 33 22222334 5688998766 5566677766544
No 133
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.00027 Score=68.21 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=118.3
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCCCCHHHH---hhcCCEEEEeccCCcccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFYPDVCEL---AANSDVLIICCALTDQTH 224 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---l~~aDvV~l~~P~t~~t~ 224 (330)
...+|+||+|.||+.+|......|++|.+|+|+..+.. ....+.+++|+ ++.---|++++-......
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 35799999999999999999999999999999876421 22335577776 566778888876543334
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHH
Q 020160 225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKD 304 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~ 304 (330)
.+| ++.+..|.+|-++|+-|...--|...-.++|.+..|...+.-|...|--... =|-+ +-|-+.++++.
T Consensus 83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~----GPSi-----MpGG~~eay~~ 152 (473)
T COG0362 83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARH----GPSI-----MPGGQKEAYEL 152 (473)
T ss_pred HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccccc----CCCc-----CCCCCHHHHHH
Confidence 444 5789999999999999999999999999999999999999999887753211 1222 34677888888
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 020160 305 VCELAVANLEAFFSNKPLLT 324 (330)
Q Consensus 305 ~~~~~~~nl~~~~~g~~~~~ 324 (330)
+... ++.|-+-..|+|.-.
T Consensus 153 v~pi-l~~IaAk~~g~pCc~ 171 (473)
T COG0362 153 VAPI-LTKIAAKVDGEPCCT 171 (473)
T ss_pred HHHH-HHHHHhhcCCCCcee
Confidence 8666 445666666877643
No 134
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.93 E-value=2.8e-05 Score=74.50 Aligned_cols=103 Identities=19% Similarity=0.268 Sum_probs=73.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCC-----------------CCCCHHHHhhcCCEEEEec
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYP-----------------FYPDVCELAANSDVLIICC 217 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~-----------------~~~~l~ell~~aDvV~l~~ 217 (330)
++|+|||.|.||..+|.+|...|.+|.+++|++... .+.. ...+. +.+..+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 579999999999999999999999999999864210 0110 12233 5678999999999
Q ss_pred cCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 218 ALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 218 P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
|.. .....+ .+..+.++++.++|.+.-| +-..+.+.+.+...++.
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 864 444444 4566677889998888653 44456677777665543
No 135
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.91 E-value=2.1e-05 Score=73.28 Aligned_cols=85 Identities=28% Similarity=0.327 Sum_probs=67.8
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 228 (330)
-|.||||+|||||+=|++=|..|+-.|.+|++--|..... .++. ..+.+|+.++||+|.+.+|...+.. ++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q~~-vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQKE-VYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhHHH-HHH
Confidence 4899999999999999999999999999987655544331 2333 4589999999999999999765543 556
Q ss_pred HHHHhcCCCCcEE
Q 020160 229 KQVLLALGKKGVI 241 (330)
Q Consensus 229 ~~~l~~mk~gail 241 (330)
.+.-..||.|+.|
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 6788889998755
No 136
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.90 E-value=0.00014 Score=64.23 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=65.9
Q ss_pred CCccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCC-------CCCC-----CCCHHHHhhcCCEEEEec
Q 020160 151 PLGSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSV-------TYPF-----YPDVCELAANSDVLIICC 217 (330)
Q Consensus 151 ~~~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~~~~-----~~~l~ell~~aDvV~l~~ 217 (330)
+.+.++.||++.|||-+ .+|+.+|..|...|+.|+.++.+.-... .... ..++.+.+++||+|+.++
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 34778999999999977 4699999999999999998864221100 0000 112789999999999998
Q ss_pred cCCcccccc-ccHHHHhcCCCCcEEEEcCC
Q 020160 218 ALTDQTHHL-INKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 218 P~t~~t~~l-i~~~~l~~mk~gailIN~~r 246 (330)
+.. ++ +..+. .|+|+++||+|-
T Consensus 135 G~~----~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 135 PSP----NYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred CCC----CCccCHHH---cCCCcEEEEcCC
Confidence 743 34 66654 689999999984
No 137
>PLN00203 glutamyl-tRNA reductase
Probab=97.89 E-value=1.4e-05 Score=80.93 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=67.7
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------CC----CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------TY----PFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------~~----~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
++.+++|+|||.|.||+.+++.|...|. +|++++|+..... +. ....++.+.+.++|+|+.++| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 4889999999999999999999999997 6999999865421 11 112456778899999999875 4
Q ss_pred ccccccHHHHhcCCCC-------cEEEEcCCC
Q 020160 223 THHLINKQVLLALGKK-------GVIINVGRG 247 (330)
Q Consensus 223 t~~li~~~~l~~mk~g-------ailIN~~rg 247 (330)
...+|.++.++.++++ -+|||.+=.
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 4557888888876432 367777643
No 138
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.89 E-value=7.1e-05 Score=70.26 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=71.7
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-----------CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTY-----------PFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~-----------~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
++|+|||.|.||..+|..|...|.+|..++|+++.. .+. ....+..++ ..+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 479999999999999999999999999998854321 121 112345555 8999999999854 4
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 020160 223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGG 266 (330)
Q Consensus 223 t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~g 266 (330)
++.++ +...+.+.+++.+|...-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 44443 3444556777888887776 333566666666555543
No 139
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.89 E-value=8.3e-05 Score=75.11 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=103.2
Q ss_pred CceEEEEcCCCCCCHHHHccCC-CcceeEEcCCCCCCCChhHHhhcCcEEEe---CCCCc-h------hhHHHHHHHHHH
Q 020160 58 SVKAIFSSAGAPVTAEILRLLP-EVRLVVATSAGLNHIDVVECRRRGVALAN---AGNVF-S------EDVADYALGLLI 126 (330)
Q Consensus 58 ~~d~ii~~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n---~~~~~-~------~~vAE~al~l~L 126 (330)
++|+|+.-. +.+.+-++.++ .--+|+......|.=-++++.++||.+.. .|... + .++|+.+=
T Consensus 65 ~~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG---- 138 (509)
T PRK09424 65 QSDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG---- 138 (509)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH----
Confidence 467777432 23444456655 34456666555555457778889988865 22100 1 12333221
Q ss_pred HHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCC-
Q 020160 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFY- 200 (330)
Q Consensus 127 ~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~- 200 (330)
+|-+....+. -++... +..-......|.+|.|+|.|.+|...++.++.+|.+|.++|+++... .+....
T Consensus 139 --y~Av~~aa~~--~~~~~~-g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~ 213 (509)
T PRK09424 139 --YRAVIEAAHE--FGRFFT-GQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLE 213 (509)
T ss_pred --HHHHHHHHHH--hcccCC-CceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEE
Confidence 2222222111 111110 00001113569999999999999999999999999999999876431 122100
Q ss_pred ------------------CCH--------HHHhhcCCEEEEeccCCcc-ccccccHHHHhcCCCCcEEEEcCC
Q 020160 201 ------------------PDV--------CELAANSDVLIICCALTDQ-THHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 201 ------------------~~l--------~ell~~aDvV~l~~P~t~~-t~~li~~~~l~~mk~gailIN~~r 246 (330)
.+. .+.++.+|+|+.+.-.... ...++.++.++.||+|+++|++|=
T Consensus 214 i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 214 LDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred eccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 010 1112569999988753221 234556889999999999999974
No 140
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.89 E-value=1.7e-05 Score=75.41 Aligned_cols=90 Identities=23% Similarity=0.373 Sum_probs=62.2
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCC------CCCCC--CCCHHHHhhcCCEEEEeccCCcccccc
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPS------VTYPF--YPDVCELAANSDVLIICCALTDQTHHL 226 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~------~~~~~--~~~l~ell~~aDvV~l~~P~t~~t~~l 226 (330)
+.|++|+|||.|.||+.+++.++..| .+|.+++|++... .+... ..++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 5788899986532 12211 23466778899999999985543 222
Q ss_pred ccHHHHhcC-CCCcEEEEcCCC
Q 020160 227 INKQVLLAL-GKKGVIINVGRG 247 (330)
Q Consensus 227 i~~~~l~~m-k~gailIN~~rg 247 (330)
+ +..++.. +++.++||++..
T Consensus 255 ~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCC
Confidence 2 2333322 246678877753
No 141
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.88 E-value=7.3e-05 Score=67.96 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=99.7
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCE---EEEECCCC----CCC-------C----CC---CCCCCHHHHhhcCCE
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCC---VSYNSRNK----KPS-------V----TY---PFYPDVCELAANSDV 212 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~---V~~~~~~~----~~~-------~----~~---~~~~~l~ell~~aDv 212 (330)
.++.++++.|+|.|.+|+.+|..|...|++ |..+||+. ... . .. ....++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 357899999999999999999999999985 88999873 221 0 00 111367788889999
Q ss_pred EEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-ceEEEEecCCCCCCCCcccccCCceEEc
Q 020160 213 LIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE-IGGAGLDVFENEPDVPEQLFALDNVVLS 291 (330)
Q Consensus 213 V~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~L~~~~nvilT 291 (330)
|+.+.| .++++.+.++.|+++.++...+.- ..|.-+.++.+.|- +..-|.. . -..+..|+.+=
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~~-----~----~~~Q~nn~~~f 164 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGRS-----D----FPNQVNNVLGF 164 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCCC-----C----Cccccceeeec
Confidence 999876 467888999999999998888843 34544555555444 3333321 1 23466788888
Q ss_pred CCCCCCC-----HHHHHHHHHHHHHHHHHHHc
Q 020160 292 PHSAVFT-----PESFKDVCELAVANLEAFFS 318 (330)
Q Consensus 292 PHia~~t-----~~~~~~~~~~~~~nl~~~~~ 318 (330)
|=++-.. ..--+.|...+++-|-++..
T Consensus 165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 165 PGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred chhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 8765321 11224555566666655554
No 142
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.84 E-value=1.1e-05 Score=70.77 Aligned_cols=109 Identities=16% Similarity=0.252 Sum_probs=70.9
Q ss_pred eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhcC
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAANS 210 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~a 210 (330)
+|+|||.|.||+.+|..+...|++|..||+++... .+ .....+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 69999999999999999999999999999976521 01 11246787777 99
Q ss_pred CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH-cCCceEEEEecCC
Q 020160 211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL-RGEIGGAGLDVFE 273 (330)
Q Consensus 211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~-~g~i~ga~lDV~~ 273 (330)
|+|+=++|..-+.+.-+-++.-+.++++++|...+.+ +....|...+. ..++ .++=.|.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~p~R~--ig~Hf~~ 139 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSRPERF--IGMHFFN 139 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSSTGGGE--EEEEE-S
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCcCceE--EEEeccc
Confidence 9999999988776655545566678888877655333 44556666653 2344 3444443
No 143
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.83 E-value=4e-05 Score=72.74 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=69.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC----------C---C------CCCCCCCHHHHhhcCCEEEEeccC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP----------S---V------TYPFYPDVCELAANSDVLIICCAL 219 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~---~------~~~~~~~l~ell~~aDvV~l~~P~ 219 (330)
++|+|||.|..|.++|+.|...|.+|..|.|+++. . . ......++.+.++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 58999999999999999999999999999875321 0 0 123456899999999999999994
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 020160 220 TDQTHHLINKQVLLALGKKGVIINVGRGAIID 251 (330)
Q Consensus 220 t~~t~~li~~~~l~~mk~gailIN~~rg~~vd 251 (330)
...+..+. +.-..++++..+|+++-|=-.+
T Consensus 82 -~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 82 -QALREVLR-QLKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred -HHHHHHHH-HHhhhccCCCeEEEEeccccCC
Confidence 34444432 2224568999999998875544
No 144
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.82 E-value=0.00011 Score=68.53 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=65.3
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-| .+|+.+|.+|...|+.|+.+... ..++.+..++||+|+.++.. .+++..+.
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------T~~l~~~~~~ADIvV~AvGk----p~~i~~~~ 218 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF---------TKDLKAHTKKADIVIVGVGK----PNLITEDM 218 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CcCHHHHHhhCCEEEEecCc----ccccCHHH
Confidence 346899999999999 89999999999999999877432 13688999999999999853 34677655
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
.|+|+++||+|--.
T Consensus 219 ---vk~gavvIDvGin~ 232 (281)
T PRK14183 219 ---VKEGAIVIDIGINR 232 (281)
T ss_pred ---cCCCcEEEEeeccc
Confidence 67999999998543
No 145
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.81 E-value=5.3e-05 Score=70.33 Aligned_cols=94 Identities=21% Similarity=0.334 Sum_probs=72.7
Q ss_pred ceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 228 (330)
++|||||+|+||++++..+...| .+|++.+|+.+... +.....+.+++..++|+|++++.. . .+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q--~~-- 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q--DL-- 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H--hH--
Confidence 58999999999999999999888 58899998876432 233356777899999999999853 2 12
Q ss_pred HHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 020160 229 KQVLLALG---KKGVIINVGRGAIIDEKEMVGCLL 260 (330)
Q Consensus 229 ~~~l~~mk---~gailIN~~rg~~vd~~aL~~aL~ 260 (330)
.+.++.++ ++.++|.+.-| |..+.|.+.+.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 56666676 68899999877 56677777775
No 146
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.81 E-value=2.8e-05 Score=77.08 Aligned_cols=89 Identities=22% Similarity=0.336 Sum_probs=64.7
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------CCC--CCCCHHHHhhcCCEEEEeccCCccccc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------TYP--FYPDVCELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~ 225 (330)
.+.|++++|+|.|.||+.+++.|+..|. +|++++|++.... +.. ...++.+.+.++|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 7899999764321 111 1234566788999999987644 34
Q ss_pred cccHHHHhcC-----CCCcEEEEcCC
Q 020160 226 LINKQVLLAL-----GKKGVIINVGR 246 (330)
Q Consensus 226 li~~~~l~~m-----k~gailIN~~r 246 (330)
++..+.++.+ +.+.++||++-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 5666666553 24567888764
No 147
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.80 E-value=5.6e-05 Score=71.11 Aligned_cols=103 Identities=25% Similarity=0.331 Sum_probs=71.6
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC-----CCCC-------------CCCCCHHHHhhcCCEEEEeccCC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-----SVTY-------------PFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~-------------~~~~~l~ell~~aDvV~l~~P~t 220 (330)
++|+|||.|.||..+|..|...|.+|..++| ... ..+. ....+.++....+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4799999999999999999999999999888 321 0010 01234556668999999999854
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
.++..+ ++.....+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 344433 3444556778888877665 34466777777665554
No 148
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.77 E-value=3.3e-05 Score=72.33 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=70.8
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCC------CCCCHHHHhhcCCEEEEec--cCCc
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYP------FYPDVCELAANSDVLIICC--ALTD 221 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~------~~~~l~ell~~aDvV~l~~--P~t~ 221 (330)
+...++.|||.|.+|..-|+.+.++|.+|+..|.+.++.. +.. ....+++.+.++|+|+-++ |..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga- 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA- 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC-
Confidence 6677999999999999999999999999999988754321 111 1235778899999998764 433
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 020160 222 QTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 222 ~t~~li~~~~l~~mk~gailIN~~ 245 (330)
..-.++.++.+++||||+++|+++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 445688899999999999999984
No 149
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=0.00023 Score=66.63 Aligned_cols=111 Identities=23% Similarity=0.370 Sum_probs=81.0
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++.+.+++||+|+.++.. .++|+.+.
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG~----p~~i~~~~ 219 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVGK----PKLITADM 219 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence 446899999999965 67999999999999999887532 23688999999999999853 34788776
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 299 (330)
+ |+|+++||+|.-.+ .+|++ .-||-..+ ... ---.+||--||.-.
T Consensus 220 i---k~gavVIDvGi~~~----------~~gkl---~GDvd~e~------v~~-~a~~iTPVPGGVGp 264 (284)
T PRK14190 220 V---KEGAVVIDVGVNRL----------ENGKL---CGDVDFDN------VKE-KASYITPVPGGVGP 264 (284)
T ss_pred c---CCCCEEEEeecccc----------CCCCe---eccCcHHH------Hhh-hceEecCCCCCChH
Confidence 5 89999999997553 23454 45663211 111 12358998788755
No 150
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.69 E-value=0.00016 Score=67.15 Aligned_cols=113 Identities=24% Similarity=0.362 Sum_probs=83.3
Q ss_pred ccccCCceEEEEecChH-HHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLGSI-GSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.+++|+++.|||-|+| |+.++..|...++.|+++.... .++.+..++||+|+.++- -.+++.++
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d- 216 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKAD- 216 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Cccccccc-
Confidence 45799999999999875 8999999999999999886542 368899999999999874 23566654
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHH
Q 020160 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~ 301 (330)
..|||+++|++|--.+-+ +++ .-||-..+. ....--+||=-||.-+=+
T Consensus 217 --~vk~gavVIDVGinrv~~----------~kl---~GDVdf~~v-------~~~a~~iTPVPGGVGPmT 264 (283)
T COG0190 217 --MVKPGAVVIDVGINRVND----------GKL---VGDVDFDSV-------KEKASAITPVPGGVGPMT 264 (283)
T ss_pred --cccCCCEEEecCCccccC----------Cce---EeeccHHHH-------HHhhcccCCCCCccCHHH
Confidence 478999999998755433 565 456643322 112334788888876533
No 151
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.69 E-value=8.4e-05 Score=71.68 Aligned_cols=90 Identities=21% Similarity=0.214 Sum_probs=70.2
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCC----------CCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160 170 GSEVAKRLEAFGCCVSYNSRNKKP----------SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239 (330)
Q Consensus 170 G~~~A~~l~~~G~~V~~~~~~~~~----------~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga 239 (330)
|..+|..|...|++|++||+++.. ..+.....+..+++++||+|++++|....++.++ ......++++.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 789999999999999999987641 1233345578888999999999999665477776 36778899999
Q ss_pred EEEEcCCCcccCH-HHHHHHHH
Q 020160 240 VIINVGRGAIIDE-KEMVGCLL 260 (330)
Q Consensus 240 ilIN~~rg~~vd~-~aL~~aL~ 260 (330)
++||++.++.... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999876655 55666664
No 152
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.69 E-value=0.00016 Score=68.98 Aligned_cols=84 Identities=18% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCceEEEEecChHHHHHHHHHHh-CC-CEEEEECCCCCCCC---------C--CCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEA-FG-CCVSYNSRNKKPSV---------T--YPFYPDVCELAANSDVLIICCALTDQT 223 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~ell~~aDvV~l~~P~t~~t 223 (330)
..++++|||.|.+|+.+++.+.. ++ .+|.+|+|++++.. + .....++++.+++||+|+.+.|.+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46899999999999999986553 45 57999999865421 1 222467889999999998877754
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 020160 224 HHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 224 ~~li~~~~l~~mk~gailIN~~r 246 (330)
+.++.. +.++||+.+.-++.
T Consensus 201 ~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred CCEecH---HHcCCCCEEEeeCC
Confidence 456655 35789985444443
No 153
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.68 E-value=0.00041 Score=64.92 Aligned_cols=80 Identities=24% Similarity=0.465 Sum_probs=65.3
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++.+.+++||+|+.++... +++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~~----~~i~~~~ 218 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------KDLPQVAKEADILVVATGLA----KFVKKDY 218 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCCc----CccCHHH
Confidence 457899999999976 579999999999999998775421 36889999999999998643 4677654
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
.|+|+++||+|--.
T Consensus 219 ---vk~GavVIDvGin~ 232 (284)
T PRK14170 219 ---IKPGAIVIDVGMDR 232 (284)
T ss_pred ---cCCCCEEEEccCcc
Confidence 68999999998655
No 154
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.67 E-value=0.00041 Score=65.05 Aligned_cols=79 Identities=18% Similarity=0.363 Sum_probs=64.4
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++.+..++||+|+.++.-. +++..+.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------T~~L~~~~~~ADIvV~AvGkp----~~i~~~~ 220 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------THNLSSITSKADIVVAAIGSP----LKLTAEY 220 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCC----CccCHHH
Confidence 346899999999976 57999999999999999877542 136889999999999998632 5777755
Q ss_pred HhcCCCCcEEEEcCCC
Q 020160 232 LLALGKKGVIINVGRG 247 (330)
Q Consensus 232 l~~mk~gailIN~~rg 247 (330)
.|+|+++||+|--
T Consensus 221 ---vk~GavVIDvGin 233 (288)
T PRK14171 221 ---FNPESIVIDVGIN 233 (288)
T ss_pred ---cCCCCEEEEeecc
Confidence 6899999999853
No 155
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.66 E-value=0.00014 Score=70.09 Aligned_cols=89 Identities=21% Similarity=0.231 Sum_probs=65.0
Q ss_pred eEEEEecChHHHHHHHHHHhCC--------CEEEEECCCC-----C----------CC---CCC------CCCCCHHHHh
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFG--------CCVSYNSRNK-----K----------PS---VTY------PFYPDVCELA 207 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G--------~~V~~~~~~~-----~----------~~---~~~------~~~~~l~ell 207 (330)
+|+|||.|+.|.++|..+...| .+|..|.+.. . .. .+. ....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998766 8999887632 0 00 011 1235788999
Q ss_pred hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 020160 208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250 (330)
Q Consensus 208 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v 250 (330)
+.||+|++++|.. ..+.++ .+.-..++++..+|+++-|=-.
T Consensus 81 ~~ADiIIlAVPs~-~i~~vl-~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 81 KGADILVFVIPHQ-FLEGIC-KQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred hcCCEEEEECChH-HHHHHH-HHHHhhcCCCCEEEEEeCCccc
Confidence 9999999999953 444443 3444567888999999887433
No 156
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.65 E-value=0.00084 Score=67.51 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=86.1
Q ss_pred ceEEEEecChHHHHHHHHHHhC--CCEEEEECCCCCCC------------CC------------CCCCCCHHHHhhcCCE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAF--GCCVSYNSRNKKPS------------VT------------YPFYPDVCELAANSDV 212 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~~------------~~------------~~~~~~l~ell~~aDv 212 (330)
++|+|||+|.+|..+|-.|... |++|+++|.++... .+ .....+..+.++.||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 6899999999999999999866 68899998765421 00 0112345677899999
Q ss_pred EEEeccCCccc-----------ccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe-cCCCCCCC
Q 020160 213 LIICCALTDQT-----------HHLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD-VFENEPDV 278 (330)
Q Consensus 213 V~l~~P~t~~t-----------~~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP~~ 278 (330)
+++|+|..... ..+.. ++.-+.++++.++|.-|.-.+=-.+.+...+.+.. .|.-.. +|.+|=+.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 99999733211 12211 34556689999999988866666667777776531 111111 25666554
Q ss_pred Cc----ccccCCceEE
Q 020160 279 PE----QLFALDNVVL 290 (330)
Q Consensus 279 ~~----~L~~~~nvil 290 (330)
+. .+...|+||+
T Consensus 161 ~G~a~~d~~~p~riVi 176 (473)
T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCcccccCCCCEEEE
Confidence 32 4777888864
No 157
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.65 E-value=0.00014 Score=69.67 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=60.4
Q ss_pred EEEEecChHHHHHHHHHHh-CCCEEEEE-CCCCCC------CCC------------------CCCCCCHHHHhhcCCEEE
Q 020160 161 VGIVGLGSIGSEVAKRLEA-FGCCVSYN-SRNKKP------SVT------------------YPFYPDVCELAANSDVLI 214 (330)
Q Consensus 161 vgIiG~G~IG~~~A~~l~~-~G~~V~~~-~~~~~~------~~~------------------~~~~~~l~ell~~aDvV~ 214 (330)
|||+|||+||+.+++.+.. -+++|.+. |..++. ..+ .....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999998764 46787654 432221 001 111346899999999999
Q ss_pred EeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160 215 ICCALTDQTHHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~r 246 (330)
.|+| .+.+..+++.+.+|+.+++|+-.--
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence 8864 5677888999999999999887543
No 158
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.63 E-value=0.00011 Score=64.76 Aligned_cols=94 Identities=20% Similarity=0.167 Sum_probs=59.0
Q ss_pred ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CC-------CCCCCHHHHhhcCCEEE
Q 020160 153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TY-------PFYPDVCELAANSDVLI 214 (330)
Q Consensus 153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~-------~~~~~l~ell~~aDvV~ 214 (330)
+..++++++.|+|. |.+|+.+++.+...|.+|..++|+..... +. ....++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 34578999999996 99999999999999999999888753210 00 00122345677788777
Q ss_pred EeccCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 020160 215 ICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250 (330)
Q Consensus 215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v 250 (330)
.+.|....+ .+ ..-...+++.+++|+.+..-+
T Consensus 103 ~at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 103 AAGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred ECCCCCcee--ch--hhhcccCceeEEEEccCCCCC
Confidence 777655431 11 111123445666666655443
No 159
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.63 E-value=0.00035 Score=65.37 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=65.0
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++.+..++||+|+.++.- .+++..+.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~ 220 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------TQNLPSIVRQADIIVGAVGK----PEFIKADW 220 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEeCCC----cCccCHHH
Confidence 346899999999975 57999999999999999987643 23688999999999998863 34677654
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
.|+|+++||+|--.
T Consensus 221 ---ik~gavVIDvGin~ 234 (284)
T PRK14177 221 ---ISEGAVLLDAGYNP 234 (284)
T ss_pred ---cCCCCEEEEecCcc
Confidence 68999999998533
No 160
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.63 E-value=0.00036 Score=65.77 Aligned_cols=116 Identities=19% Similarity=0.286 Sum_probs=82.0
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++.+..++||+|+++++-. +++..+.
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvIsAvGkp----~~i~~~~ 219 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------TQDLASITREADILVAAAGRP----NLIGAEM 219 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence 446899999999976 57999999999999999877442 136889999999999998733 4677654
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHH
Q 020160 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~ 300 (330)
.|+|+++||+|--.+.|.+ ++|++ .-||-..+ .... --.+||--||.-.=
T Consensus 220 ---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~~------v~~~-a~~iTPVPGGVGp~ 269 (297)
T PRK14186 220 ---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFEE------VEPV-AAAITPVPGGVGPM 269 (297)
T ss_pred ---cCCCCEEEEeccccccccc------cCCce---eCCccHHH------HHhh-ceEecCCCCCchHH
Confidence 6899999999865543221 13554 45654211 1111 23489997887553
No 161
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.62 E-value=0.00036 Score=65.27 Aligned_cols=111 Identities=23% Similarity=0.335 Sum_probs=79.6
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++.+..++||+|++++.-. ++++.+.
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~p----~~i~~~~ 217 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVGVP----HFIGADA 217 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence 446899999999976 579999999999999998774321 36889999999999998643 4677764
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 299 (330)
+|+|+++||+|--.+. +|++ .-||-..+- .. ----+||==||.-.
T Consensus 218 ---vk~GavVIDvGin~~~----------~gkl---~GDVd~~~v------~~-~a~~iTPVPGGVGp 262 (282)
T PRK14169 218 ---VKPGAVVIDVGISRGA----------DGKL---LGDVDEAAV------AP-IASAITPVPGGVGP 262 (282)
T ss_pred ---cCCCcEEEEeeccccC----------CCCe---eecCcHHHH------Hh-hccEecCCCCCcHH
Confidence 6899999999864431 3555 456642211 10 12358897777654
No 162
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.62 E-value=0.00055 Score=63.95 Aligned_cols=110 Identities=19% Similarity=0.340 Sum_probs=79.7
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++.+..++||+|+.++... +++..+.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------T~~l~~~~~~ADIvIsAvGkp----~~i~~~~ 219 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------TKNLKEVCKKADILVVAIGRP----KFIDEEY 219 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCCc----CccCHHH
Confidence 346899999999976 57999999999999999887642 136889999999999998643 4677755
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 299 (330)
.|+|+++||+|--.+ +|++ .=||-..+ .... ---+||--||.-.
T Consensus 220 ---ik~gavVIDvGin~~-----------~gkl---~GDvd~~~------v~~~-a~~iTPVPGGVGp 263 (278)
T PRK14172 220 ---VKEGAIVIDVGTSSV-----------NGKI---TGDVNFDK------VIDK-ASYITPVPGGVGS 263 (278)
T ss_pred ---cCCCcEEEEeecccc-----------CCce---eeeccHHH------HHhh-ccEecCCCCCccH
Confidence 689999999975432 2455 45663211 1111 1248998788765
No 163
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.62 E-value=0.00075 Score=64.15 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=73.6
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---CCC------C--------CCCCHHHHhhcCCEEEEeccCC
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---VTY------P--------FYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~~------~--------~~~~l~ell~~aDvV~l~~P~t 220 (330)
.++|+|||.|.||..+|.+|...|.+|.++.|+.... .+. . ...+. +....+|+|+++++..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~ 83 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTT 83 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCC
Confidence 3689999999999999999999999999888765211 010 0 01122 3467899999999865
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL 269 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l 269 (330)
. +...+ +.....+++++.++...-| +-.++.+.+.+...++.++..
T Consensus 84 ~-~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~ 129 (313)
T PRK06249 84 A-NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC 129 (313)
T ss_pred C-hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence 3 33332 2344556778888877665 446777888887667665533
No 164
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.61 E-value=0.0004 Score=65.16 Aligned_cols=81 Identities=26% Similarity=0.429 Sum_probs=66.0
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++.+..++||+|+.++... ++++.+.
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvGkp----~~i~~~~ 216 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVGRP----HLITPEM 216 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCCc----CccCHHH
Confidence 456899999999965 679999999999999998775422 36889999999999998532 5777765
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 020160 232 LLALGKKGVIINVGRGAI 249 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~ 249 (330)
.|+|+++||+|.-.+
T Consensus 217 ---vk~GavVIDVGin~~ 231 (287)
T PRK14173 217 ---VRPGAVVVDVGINRV 231 (287)
T ss_pred ---cCCCCEEEEccCccc
Confidence 589999999997654
No 165
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.60 E-value=0.00015 Score=67.98 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=61.2
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC------C-C---CCCCCHHHHhhcCCEEEEeccCCccc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV------T-Y---PFYPDVCELAANSDVLIICCALTDQT 223 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~------~-~---~~~~~l~ell~~aDvV~l~~P~t~~t 223 (330)
.+.++++.|+|.|.+|++++..|...| .+|.+++|+.+... . . ....++.+.+..+|+|+.++|..-..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 467899999999999999999999999 68999999865321 1 0 01013346678899999999865322
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 020160 224 HHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 224 ~~li~~~~l~~mk~gailIN~~r 246 (330)
..-...-.+..++++.+++++.-
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeec
Confidence 10000111234556666666654
No 166
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.60 E-value=0.00039 Score=65.05 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=65.2
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++.+..++||+|+.++.- .+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvGk----p~~i~~~~ 218 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 446899999999976 579999999999999998775432 3688999999999999864 34677764
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
.|+|+++||+|--.
T Consensus 219 ---vk~GavVIDvGin~ 232 (282)
T PRK14166 219 ---VKEGVIVVDVGINR 232 (282)
T ss_pred ---cCCCCEEEEecccc
Confidence 68999999998533
No 167
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.58 E-value=0.00042 Score=65.30 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=65.5
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++.+.+++||+|+.++.. .+++..+.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~ 228 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------TPDPESIVREADIVIAAAGQ----AMMIKGDW 228 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 446899999999976 56999999999999999887542 23688999999999999854 25777755
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
.|+|+++||+|--.
T Consensus 229 ---vk~gavVIDvGin~ 242 (299)
T PLN02516 229 ---IKPGAAVIDVGTNA 242 (299)
T ss_pred ---cCCCCEEEEeeccc
Confidence 68999999998644
No 168
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.58 E-value=0.00029 Score=67.61 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=62.0
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCCCCCCCCCH----HHHhhcCCEEEEeccCCccccccccH
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSVTYPFYPDV----CELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l----~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
++.|+++.|||.|.||+.+|+.|...|. +|++.+|+.... .+.++ .++..++|+|+.+.-.|......+..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~----~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL----PYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc----chhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 5899999999999999999999999996 689999987431 12222 25568999999874333333445666
Q ss_pred HHHhcCCCCcEEEEcCCCc
Q 020160 230 QVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~ 248 (330)
+.++..++ -++||.+=..
T Consensus 247 ~~~~~~~~-r~~iDLAvPR 264 (338)
T PRK00676 247 ESLADIPD-RIVFDFNVPR 264 (338)
T ss_pred HHHhhccC-cEEEEecCCC
Confidence 65554332 3777765433
No 169
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.56 E-value=0.00047 Score=64.50 Aligned_cols=79 Identities=24% Similarity=0.367 Sum_probs=64.5
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++.+..++||+|+.+++-. ++|..+.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvGkp----~~i~~~~ 219 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVGKP----NFITADM 219 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccCCc----CcCCHHH
Confidence 446899999999976 579999999999999998875421 36889999999999998643 4677654
Q ss_pred HhcCCCCcEEEEcCCC
Q 020160 232 LLALGKKGVIINVGRG 247 (330)
Q Consensus 232 l~~mk~gailIN~~rg 247 (330)
.|+|+++||+|--
T Consensus 220 ---vk~gavVIDvGin 232 (282)
T PRK14180 220 ---VKEGAVVIDVGIN 232 (282)
T ss_pred ---cCCCcEEEEeccc
Confidence 6899999999853
No 170
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.55 E-value=0.00031 Score=62.71 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=66.5
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC---CCCC---------CC-----------------C--C---
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN---KKPS---------VT-----------------Y--P--- 198 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~---~~~~---------~~-----------------~--~--- 198 (330)
..|..++|+|+|+|.+|..+|+.|...|. +++.+|+. .... .+ . .
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 35889999999999999999999999999 68888876 2110 00 0 0
Q ss_pred ---CCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEc
Q 020160 199 ---FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV 244 (330)
Q Consensus 199 ---~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~ 244 (330)
...++.++++++|+|+-+ ..+.+++.++..+....++...++...
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 012345678889999888 578888988888888888776666643
No 171
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00054 Score=64.18 Aligned_cols=110 Identities=18% Similarity=0.369 Sum_probs=80.6
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHh--CCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEA--FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~--~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
+.++.||++.|||-+ .+|+.+|..|.. .|+.|+.+... ..++.+.+++||+|+.++... +++..
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvGkp----~~i~~ 219 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAGVA----HLVTA 219 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecCCc----CccCH
Confidence 456899999999965 679999999987 78999887542 236889999999999998643 46777
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160 230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~ 299 (330)
+. +|+|+++||+|.-.+ .+|++ .-||- .+ ..... -.+||-=||.-.
T Consensus 220 ~~---ik~GavVIDvGin~~----------~~gkl---~GDvd-~~------v~~~a-~~iTPVPGGVGp 265 (284)
T PRK14193 220 DM---VKPGAAVLDVGVSRA----------GDGKL---VGDVH-PD------VWEVA-GAVSPNPGGVGP 265 (284)
T ss_pred HH---cCCCCEEEEcccccc----------CCCcE---EeecC-Hh------HHhhC-CEEeCCCCChhH
Confidence 55 689999999986553 34555 45665 21 11111 248998788654
No 172
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.54 E-value=0.00031 Score=65.44 Aligned_cols=104 Identities=16% Similarity=0.063 Sum_probs=71.0
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCCCCCHHHH-hhcCCEEEEeccCC--ccc
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPFYPDVCEL-AANSDVLIICCALT--DQT 223 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el-l~~aDvV~l~~P~t--~~t 223 (330)
..+++++|+|.|.+|++++..+...|.+|.+++|+..+.. +.....++++. +.++|+|+.++|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 4578999999999999999999999999999998754311 11111234433 35799999999975 222
Q ss_pred cc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160 224 HH-LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI 264 (330)
Q Consensus 224 ~~-li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i 264 (330)
.. .++ .+.++++.+++++.-..... .|.+..++..+
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~ 231 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGT 231 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence 11 222 34578899999997766433 46666665544
No 173
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.54 E-value=0.00024 Score=69.07 Aligned_cols=92 Identities=20% Similarity=0.232 Sum_probs=64.7
Q ss_pred CceEEEEecChHHHHHHHHHHhCC-------CEEEEECCCCCC---------------C---CC------CCCCCCHHHH
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFG-------CCVSYNSRNKKP---------------S---VT------YPFYPDVCEL 206 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~~---------------~---~~------~~~~~~l~el 206 (330)
-++|+|||.|.+|.++|..+...| .+|..|.++... . .+ .....+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 368999999999999999998655 789888776531 0 01 1124578889
Q ss_pred hhcCCEEEEeccCCccccccccHHHHh--cCCCCcEEEEcCCCcccC
Q 020160 207 AANSDVLIICCALTDQTHHLINKQVLL--ALGKKGVIINVGRGAIID 251 (330)
Q Consensus 207 l~~aDvV~l~~P~t~~t~~li~~~~l~--~mk~gailIN~~rg~~vd 251 (330)
++.||+|++++|.. ..+.++. +.-. .+++++++|+++-|=-.+
T Consensus 91 v~~aDiIvlAVPsq-~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 91 VEDADLLIFVIPHQ-FLESVLS-QIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HhcCCEEEEEcChH-HHHHHHH-HhccccccCCCCEEEEEeCCcccC
Confidence 99999999999943 4444432 2223 456677999998775443
No 174
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.54 E-value=0.00053 Score=64.51 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=65.3
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++.+..++||+|+.++... +++..+.
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvGkp----~~i~~~~ 221 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVGIP----NFVKYSW 221 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence 446899999999976 579999999999999998776432 36889999999999998643 4677755
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
.|+|+++||+|--.
T Consensus 222 ---ik~gaiVIDVGin~ 235 (294)
T PRK14187 222 ---IKKGAIVIDVGINS 235 (294)
T ss_pred ---cCCCCEEEEecccc
Confidence 57999999998644
No 175
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.53 E-value=0.00027 Score=62.91 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=48.1
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCC
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ 237 (330)
++++|||- |.||+.+++.++..|+.|. +++||+|++|+|... +. +.++.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~~-~~-----~~i~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPIDA-AL-----NYIESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHHH-HH-----HHHHHhC-
Confidence 47999998 9999999999999999985 369999999999652 22 3333333
Q ss_pred CcEEEEcCCCcc
Q 020160 238 KGVIINVGRGAI 249 (330)
Q Consensus 238 gailIN~~rg~~ 249 (330)
.++++++.-+-
T Consensus 53 -~~v~Dv~SvK~ 63 (197)
T PRK06444 53 -NNFVEISSVKW 63 (197)
T ss_pred -CeEEeccccCH
Confidence 37899987553
No 176
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.52 E-value=0.00021 Score=58.10 Aligned_cols=100 Identities=23% Similarity=0.393 Sum_probs=69.8
Q ss_pred ceEEEEe----cChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc
Q 020160 159 KRVGIVG----LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA 234 (330)
Q Consensus 159 ~~vgIiG----~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~ 234 (330)
|+++||| -|..|..+.+.++..|++|+..++......+...+.++.|.-...|++++++|... +..++ +.+..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~-~~~~v--~~~~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDK-VPEIV--DEAAA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHH-HHHHH--HHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHH-HHHHH--HHHHH
Confidence 6899999 78999999999999999999998877666676778899985588999999998543 33343 23344
Q ss_pred CCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 235 LGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 235 mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
+..+.+++..| ..++++.+.+++..+.
T Consensus 78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 78 LGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 56778888887 6677888888887765
No 177
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.52 E-value=0.00053 Score=65.96 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=65.0
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+... ..++.+..++||+|+.++.. .+++..+.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------T~nl~~~~r~ADIVIsAvGk----p~~i~~d~ 292 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITREADIIISAVGQ----PNMVRGSW 292 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCcCCHHH
Confidence 346899999999965 57999999999999999887542 23688999999999999853 34677755
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
.|+|+++||+|--.
T Consensus 293 ---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 293 ---IKPGAVVIDVGINP 306 (364)
T ss_pred ---cCCCCEEEeccccc
Confidence 68999999998644
No 178
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.00067 Score=63.45 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=65.2
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|.+|...|+.|+.+... ..++.+..++||+|+.++.- .++|..+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~ 218 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------TADLAGEVGRADILVAAIGK----AELVKGAW 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 346899999999976 57999999999999999887543 13688999999999999863 34777755
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
.|+|+++||+|--.
T Consensus 219 ---ik~gaiVIDvGin~ 232 (282)
T PRK14182 219 ---VKEGAVVIDVGMNR 232 (282)
T ss_pred ---cCCCCEEEEeecee
Confidence 68999999998654
No 179
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.50 E-value=0.00049 Score=64.86 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=64.2
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHh----CCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEA----FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
+.++.||++.|||-+ .+|+.+|..|.. .|.+|..+.... .++.+.+++||+|+.+++.. ++|
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~~----~li 220 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGKA----RFI 220 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCcc----Ccc
Confidence 346899999999976 579999999976 588887765432 35889999999999999533 578
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 020160 228 NKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~ 248 (330)
..+.+ |+|+++||+|-..
T Consensus 221 ~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 221 TADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CHHHc---CCCCEEEEeeccc
Confidence 88776 8999999998544
No 180
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.50 E-value=0.00056 Score=65.47 Aligned_cols=80 Identities=21% Similarity=0.359 Sum_probs=64.9
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+.++.||++.|||-+ .+|+.+|..|...|+.|+.+.... .++.+..++||+|+.++... +++..+.
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvGkp----~~v~~d~ 275 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAGIP----NLVRGSW 275 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence 456899999999976 569999999999999998775421 36889999999999998643 4677655
Q ss_pred HhcCCCCcEEEEcCCCc
Q 020160 232 LLALGKKGVIINVGRGA 248 (330)
Q Consensus 232 l~~mk~gailIN~~rg~ 248 (330)
+|+|+++||+|--.
T Consensus 276 ---vk~GavVIDVGin~ 289 (345)
T PLN02897 276 ---LKPGAVVIDVGTTP 289 (345)
T ss_pred ---cCCCCEEEEccccc
Confidence 68999999998643
No 181
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.48 E-value=0.00074 Score=63.29 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=64.6
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhC----CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAF----GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
+.++.||++.|||-+ .+|+.+|..|... ++.|+.+... ..++.+.+++||+|+.++.-. +++
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------T~~l~~~~~~ADIvV~AvG~p----~~i 214 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------SENLTEILKTADIIIAAIGVP----LFI 214 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCc----Ccc
Confidence 346899999999976 5799999999887 7899877542 136899999999999998643 467
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 020160 228 NKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~ 248 (330)
..+. .|+|+++||+|--.
T Consensus 215 ~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 215 KEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CHHH---cCCCCEEEEecccc
Confidence 7755 68999999998654
No 182
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.47 E-value=0.00036 Score=66.83 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=63.0
Q ss_pred CceEEEEecChHHHHHHHHHHh-C-CCEEEEECCCCCCCC---------C--CCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEA-F-GCCVSYNSRNKKPSV---------T--YPFYPDVCELAANSDVLIICCALTDQTH 224 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~-~-G~~V~~~~~~~~~~~---------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~ 224 (330)
-+++||||.|.+|+..++.+.. + .-+|.+|+++.+... + .....+.++++++||+|+.|+|.+ .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4799999999999997776653 2 347889999875421 2 123578999999999999998754 4
Q ss_pred ccccHHHHhcCCCCcEEEEcCCC
Q 020160 225 HLINKQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~rg 247 (330)
.++..+ .+|||+.+..+|.-
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cEecHH---HcCCCCEEEecCCC
Confidence 566554 46999999999853
No 183
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.46 E-value=0.00035 Score=67.20 Aligned_cols=95 Identities=24% Similarity=0.327 Sum_probs=69.7
Q ss_pred CccccCCceEEEEec-ChHHHHHHHHHHh-CC-CEEEEECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 152 LGSKLGGKRVGIVGL-GSIGSEVAKRLEA-FG-CCVSYNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 152 ~~~~l~g~~vgIiG~-G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
++.++.|+++.|+|. |.||+.+++.|.. .| .+++.++|+..... ......++++.+.++|+|+.+.-.
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~--- 225 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM--- 225 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---
Confidence 355789999999998 8999999999974 56 48888888654311 111234677899999988876532
Q ss_pred ccc-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 020160 223 THH-LINKQVLLALGKKGVIINVGRGAIIDE 252 (330)
Q Consensus 223 t~~-li~~~~l~~mk~gailIN~~rg~~vd~ 252 (330)
.+. .++.+. ++++.++||+|+..=||.
T Consensus 226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 233 377764 478999999999877764
No 184
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.45 E-value=0.00029 Score=66.91 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=64.6
Q ss_pred CCceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CCCC-CCCHHHHhhcCCEEEEeccCCcccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV---------TYPF-YPDVCELAANSDVLIICCALTDQTH 224 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~---------~~~~-~~~l~ell~~aDvV~l~~P~t~~t~ 224 (330)
..++++|||.|.+|+..++.+.. ++. +|.+|+|++.+.. +... ..++++++.++|+|+.++|.+ +
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46899999999999999999864 665 6899999865321 1111 357889999999999998865 3
Q ss_pred ccccHHHHhcCCCCcEEEEcCCC
Q 020160 225 HLINKQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~rg 247 (330)
.++.. .+|||+.++.+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 56653 36999999999853
No 185
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00056 Score=64.15 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=63.9
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHh----CCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEA----FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
+.++.||++.|||-+ .+|+.+|..|.. .|++|+.+.... .++.+.+++||+|+.++. ..+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG----~p~li 218 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIG----RPRFV 218 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecC----CCCcC
Confidence 446899999999976 579999999987 789998765421 368899999999999984 34568
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 020160 228 NKQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg 247 (330)
..+.+ |+|+++||+|--
T Consensus 219 ~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 219 TADMV---KPGAVVVDVGIN 235 (286)
T ss_pred CHHHc---CCCCEEEEeeee
Confidence 77665 899999999843
No 186
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.43 E-value=0.00048 Score=65.75 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=61.4
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC-------------CCCC------CCCCCHHHHh-hcCCEEEEecc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-------------SVTY------PFYPDVCELA-ANSDVLIICCA 218 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~~~------~~~~~l~ell-~~aDvV~l~~P 218 (330)
++|+|||.|.||..+|..|...|.+|..|+|+.+. ..+. ....++++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 47999999999999999999999999999986421 0011 1224566665 58999999998
Q ss_pred CCccccccccHHHHh-cCCCCcEEEEcCCCc
Q 020160 219 LTDQTHHLINKQVLL-ALGKKGVIINVGRGA 248 (330)
Q Consensus 219 ~t~~t~~li~~~~l~-~mk~gailIN~~rg~ 248 (330)
.. .++.++. +... .++++..+|...-|-
T Consensus 81 s~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQ-QLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HH-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 54 4444432 3333 567777777776664
No 187
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.43 E-value=0.00049 Score=63.73 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=72.3
Q ss_pred HHHHHHhCC--CEEEEECCCCCCC-----CCCCC-CCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEc
Q 020160 173 VAKRLEAFG--CCVSYNSRNKKPS-----VTYPF-YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV 244 (330)
Q Consensus 173 ~A~~l~~~G--~~V~~~~~~~~~~-----~~~~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~ 244 (330)
+|+.|+..| .+|.++|+++... .++.. ..+-.+.++++|+|++|+|... +..++ ++..+.+++|++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~-~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA-IEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH-HHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHhhhhcCCCcEEEEe
Confidence 577788777 7999999987532 13322 1122578999999999999764 34343 5677779999999999
Q ss_pred CCCcccCHHHHHHHHHcCCceEEEE-ecCCCCCC----CCcccccCCceEEcCCCC
Q 020160 245 GRGAIIDEKEMVGCLLRGEIGGAGL-DVFENEPD----VPEQLFALDNVVLSPHSA 295 (330)
Q Consensus 245 ~rg~~vd~~aL~~aL~~g~i~ga~l-DV~~~EP~----~~~~L~~~~nvilTPHia 295 (330)
+.-+.--.+++.+.+.. .....+. =.|.+|-. ....|+.-.++++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 88765555566665552 2222222 23444421 123688889999999765
No 188
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.40 E-value=0.0003 Score=69.08 Aligned_cols=91 Identities=23% Similarity=0.345 Sum_probs=65.9
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------C--CCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------T--YPFYPDVCELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~~ 225 (330)
+|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+.. + +....++.+.+.++|+|++++. +...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 4899999999999999999999999995 7889999876532 2 2234567788999999999853 4455
Q ss_pred cccHHHHhcC-C--CCcEEEEcCCCc
Q 020160 226 LINKQVLLAL-G--KKGVIINVGRGA 248 (330)
Q Consensus 226 li~~~~l~~m-k--~gailIN~~rg~ 248 (330)
+++.+.+... + +.-++||.+=..
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCC
Confidence 6665544432 1 114677776433
No 189
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.40 E-value=0.00043 Score=66.72 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=62.1
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------------CC--CC------CCCCCHHHHhhcCCEEEEecc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------------SV--TY------PFYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~--~~------~~~~~l~ell~~aDvV~l~~P 218 (330)
++|+|||.|.+|..+|..|...| .|..|.+++.. .. +. ....++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 68999999999999999999988 56666554321 00 11 123467788899999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160 219 LTDQTHHLINKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 219 ~t~~t~~li~~~~l~~mk~gailIN~~rg~ 248 (330)
. ..++..+ ++....++++..+|++.-|=
T Consensus 87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 S-HGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 4 3455443 34455678888899988764
No 190
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.37 E-value=0.0011 Score=62.52 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=63.7
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhC----CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAF----GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
+.++.||++.|||-+ .+|+.+|..|... ++.|+.+... ..++.+..++||+|+.++.- .+++
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------T~~l~~~~~~ADIvVsAvGk----p~~i 222 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------SKNLARHCQRADILIVAAGV----PNLV 222 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------CcCHHHHHhhCCEEEEecCC----cCcc
Confidence 456899999999965 6799999999876 7889876432 13688999999999998853 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 020160 228 NKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~ 248 (330)
..+. .|+|+++||+|.-.
T Consensus 223 ~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 223 KPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CHHH---cCCCCEEEecCCCc
Confidence 7655 68999999998654
No 191
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.36 E-value=0.0005 Score=68.03 Aligned_cols=86 Identities=16% Similarity=0.307 Sum_probs=61.7
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------C-C--CCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------T-Y--PFYPDVCELAANSDVLIICCALTDQTH 224 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~-~--~~~~~l~ell~~aDvV~l~~P~t~~t~ 224 (330)
.+.|+++.|||.|.||+.+++.|...|. ++++++|+..... + . ..+.++.+.+.++|+|++|++.. +
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 4889999999999999999999999996 6899999865321 1 1 12345667899999999997643 3
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 020160 225 HLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~ 245 (330)
.+|..+... .+.-++||.+
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 456655432 1234566654
No 192
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.35 E-value=0.0012 Score=62.04 Aligned_cols=80 Identities=16% Similarity=0.324 Sum_probs=63.5
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhC----CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAF----GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
+.++.||++.|||-+ .+|+.+|..|... ++.|+.+.... .++.+..++||+|+.++... ++|
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvGkp----~~i 218 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALGQP----EFV 218 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccCCc----Ccc
Confidence 346899999999976 5799999999876 68898774321 36889999999999998643 467
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 020160 228 NKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~ 248 (330)
..+ ..|+|+++||+|--.
T Consensus 219 ~~~---~vk~gavVIDvGin~ 236 (293)
T PRK14185 219 KAD---MVKEGAVVIDVGTTR 236 (293)
T ss_pred CHH---HcCCCCEEEEecCcc
Confidence 764 468999999998644
No 193
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.32 E-value=0.0014 Score=62.09 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=78.8
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhh
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAA 208 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~ 208 (330)
-+++||||.|.||+.+|..+..-|+.|..+|+++... .+ .....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 4799999999999999999988779999999885320 01 00112222 689
Q ss_pred cCCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCC
Q 020160 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE 275 (330)
Q Consensus 209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 275 (330)
.||+|+=++|.+-+.++-+-++.=...+|+++|= |||+ +.-.++.++++ ..=...++=-|.+-
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~ 145 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPV 145 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCC
Confidence 9999999999888877655556666678888774 4444 45667777773 33334566555543
No 194
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.31 E-value=0.0014 Score=61.86 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=63.2
Q ss_pred ccccCCceEEEEecC-hHHHHHHHHHHhC----CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160 153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAF----GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
+.++.||++.|||-+ .+|+.+|..|... ++.|+.+... ..++.+..++||+|+.++-- .+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~~l~~~~~~ADIvIsAvGk----p~~i 218 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------TDDLAAKTRRADIVVAAAGV----PELI 218 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCC----cCcc
Confidence 346899999999976 5799999999865 7899876432 13688999999999998743 3477
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 020160 228 NKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~rg~ 248 (330)
..+. +|+|+++||+|--.
T Consensus 219 ~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 219 DGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CHHH---cCCCCEEEEccccc
Confidence 7654 68999999998544
No 195
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.27 E-value=0.0025 Score=57.58 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=68.1
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCC----------CC------CCCCCCC-----CCHHHHh-hcC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNK----------KP------SVTYPFY-----PDVCELA-ANS 210 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~----------~~------~~~~~~~-----~~l~ell-~~a 210 (330)
.++.|+++.|.|||++|+.+|+.|...|.+|++ .|.+. +. ..+...+ .+-++++ ..|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 357899999999999999999999999997654 45443 10 0011111 1113332 468
Q ss_pred CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160 211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI 264 (330)
Q Consensus 211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i 264 (330)
|+++-|.+. +.|+.+....++ -.+++-.+.+.+-+ .-.+.|.+..+
T Consensus 99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi 144 (217)
T cd05211 99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGI 144 (217)
T ss_pred cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCc
Confidence 999887753 367878777776 45666677777655 34566666654
No 196
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.26 E-value=0.0011 Score=70.03 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=79.3
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~ 209 (330)
++|+|||.|.||..+|..+...|++|+.+|.+++.. .+ .....++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 589999999999999999999999999999876421 00 0112345 45799
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN 274 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 274 (330)
||+|+=++|...+.+.-+-++.=+.++++++|...++ -+....|.+.+... =+-.++--|.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p-~r~~g~Hff~P 454 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS--TISISLLAKALKRP-ENFCGMHFFNP 454 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCC-ccEEEEecCCc
Confidence 9999999998888777666666677899987754433 34556677766432 22245655543
No 197
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.26 E-value=0.0032 Score=57.28 Aligned_cols=104 Identities=23% Similarity=0.256 Sum_probs=67.5
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC---C--------------CC----C--CCCCCHHHH-hhc
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---S--------------VT----Y--PFYPDVCEL-AAN 209 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~--------------~~----~--~~~~~l~el-l~~ 209 (330)
.++.|+++.|.|+|.+|+.+|+.|..+|++|++...+... . .+ + ....+.+++ -.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 4578999999999999999999999999999855433110 0 00 0 000122332 236
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
||+++-|.+ .+.++.+...+++ -.+++-.+-+.+ . ....+.|.++.+.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence 788877764 3356777777776 345666666665 3 5555777777765
No 198
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.25 E-value=0.00061 Score=65.26 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=62.6
Q ss_pred CCceEEEEecChHHHHHHHHHH-hCCC-EEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLE-AFGC-CVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
..++++|||.|.+|+..+..+. ..+. +|.+++|++++.. +. ..+.+++++++++|+|++++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4679999999999999887764 4565 6889999865321 11 22567889999999999999855
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 020160 223 THHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 223 t~~li~~~~l~~mk~gailIN~~r 246 (330)
+.++. +.+|+|+.++.+|.
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred -CcchH----HhcCCCcEEEecCC
Confidence 34544 45799999998875
No 199
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.24 E-value=0.00064 Score=65.15 Aligned_cols=83 Identities=24% Similarity=0.313 Sum_probs=54.8
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCC------CCCHHHHhhcCCEEEEeccCCccccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPF------YPDVCELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~------~~~l~ell~~aDvV~l~~P~t~~t~~ 225 (330)
.|++|+|+|+|.+|....+.++++|++|++++++.++.. +... ....+.+-+.+|+++.++| ...
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~--- 241 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT--- 241 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh---
Confidence 499999999999999999999999999999999876431 1110 1112223333666666665 222
Q ss_pred cccHHHHhcCCCCcEEEEcC
Q 020160 226 LINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 226 li~~~~l~~mk~gailIN~~ 245 (330)
+ ...++.++++..++-+|
T Consensus 242 ~--~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 242 L--EPSLKALRRGGTLVLVG 259 (339)
T ss_pred H--HHHHHHHhcCCEEEEEC
Confidence 1 34555666666665554
No 200
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.23 E-value=0.0013 Score=60.81 Aligned_cols=105 Identities=20% Similarity=0.213 Sum_probs=71.3
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC--------------------CCCC-----C------CCCCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK--------------------PSVT-----Y------PFYPD 202 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~--------------------~~~~-----~------~~~~~ 202 (330)
.++.|+|+.|-|||++|+.+|+.|..+|++|++...+.. ...+ + ....+
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~ 113 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE 113 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence 468999999999999999999999999999984432110 0000 0 00113
Q ss_pred HHHH-hhcCCEEEEeccCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 203 VCEL-AANSDVLIICCALTDQTHHLINKQVLLALG--KKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 203 l~el-l~~aDvV~l~~P~t~~t~~li~~~~l~~mk--~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
.+++ -..||+++-| .+.+.|+.+..+.++ .-.+++-.+-|.+-+ +-.+.|.++.|.
T Consensus 114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 3343 3468988776 367789988888884 345777777777654 455777777664
No 201
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.22 E-value=0.00011 Score=58.45 Aligned_cols=85 Identities=22% Similarity=0.301 Sum_probs=56.7
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC--CC-CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK--PS-VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~--~~-~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
.++|+++.|||.|.+|..=++.|...|.+|+++++... +. .... ...+++.+..+|+|+.+++.. + +++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~-~~~~~~~l~~~~lV~~at~d~-~----~n~~i 77 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLI-RREFEEDLDGADLVFAATDDP-E----LNEAI 77 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEE-ESS-GGGCTTESEEEE-SS-H-H----HHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHH-hhhHHHHHhhheEEEecCCCH-H----HHHHH
Confidence 57899999999999999999999999999999988731 11 0111 123346688899888776432 2 34455
Q ss_pred HhcCCCCcEEEEcC
Q 020160 232 LLALGKKGVIINVG 245 (330)
Q Consensus 232 l~~mk~gailIN~~ 245 (330)
....+.-.+++|++
T Consensus 78 ~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 78 YADARARGILVNVV 91 (103)
T ss_dssp HHHHHHTTSEEEET
T ss_pred HHHHhhCCEEEEEC
Confidence 55566566788874
No 202
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.0042 Score=59.37 Aligned_cols=154 Identities=15% Similarity=0.156 Sum_probs=116.3
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCCCCHHHH---hhcCCEEEEeccCCccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFYPDVCEL---AANSDVLIICCALTDQTHH 225 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---l~~aDvV~l~~P~t~~t~~ 225 (330)
..+|+||++.||+.++-.....|+.|.+|+|...+.. ......|++|+ ++.--.|++.+-.......
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 5799999999999999999999999999999875421 12234578876 4667788888776666666
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHH
Q 020160 226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDV 305 (330)
Q Consensus 226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~ 305 (330)
+| ++...+|.+|-++|+-|....-|...-.+.|.+..|-..+.-|...|--... -|.+ +-|-+.++|.++
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~----GPSl-----MpGg~~~Awp~i 156 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY----GPSL-----MPGGSKEAWPHI 156 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc----CCcc-----CCCCChHHHHHH
Confidence 65 4688899999999999999999999999999999988899999887753221 0111 335667888888
Q ss_pred HHHHHHHHHHHHcCCCC
Q 020160 306 CELAVANLEAFFSNKPL 322 (330)
Q Consensus 306 ~~~~~~nl~~~~~g~~~ 322 (330)
...+..--.+.-.|+|.
T Consensus 157 k~ifq~iaakv~~~epC 173 (487)
T KOG2653|consen 157 KDIFQKIAAKVSDGEPC 173 (487)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 77665543333456665
No 203
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.19 E-value=0.00092 Score=64.08 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=63.8
Q ss_pred CCceEEEEecChHHHHHHHHHH-hCCC-EEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLE-AFGC-CVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
..++++|||.|.+|+..++.+. .++. +|.+|+|++.+.. +. ....++++.+++||+|+.++|.+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3579999999999999999987 4775 6889999875421 11 12467889999999999998764
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 020160 223 THHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 223 t~~li~~~~l~~mk~gailIN~~r 246 (330)
..+|..+. +|+|+.+..++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 34666543 689998887763
No 204
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.19 E-value=0.00059 Score=64.34 Aligned_cols=36 Identities=42% Similarity=0.588 Sum_probs=34.0
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
.|+.+||+|+|.+|+--.+.+++||++|++.+++.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 799999999999999999999999999999999763
No 205
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.17 E-value=0.0012 Score=53.70 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=54.0
Q ss_pred eEEEEe-cChHHHHHHHHHHhC-CCEEEEE-CCCCCCCC------C-CC-C-CCCH--HHH-hhcCCEEEEeccCCcccc
Q 020160 160 RVGIVG-LGSIGSEVAKRLEAF-GCCVSYN-SRNKKPSV------T-YP-F-YPDV--CEL-AANSDVLIICCALTDQTH 224 (330)
Q Consensus 160 ~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~-~~~~~~~~------~-~~-~-~~~l--~el-l~~aDvV~l~~P~t~~t~ 224 (330)
++||+| .|.+|+.+++.+... ++++... +++..... + .. . .... +++ ..++|+|++|+|.....+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 589999 599999999999874 7777654 43321111 0 10 0 0111 122 258999999999774443
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 020160 225 HLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~r 246 (330)
.+ ......+++|.++|++|.
T Consensus 81 ~~--~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 81 IA--PLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HH--HHHHhhhcCCCEEEECCc
Confidence 22 134556799999999974
No 206
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.16 E-value=0.00076 Score=63.41 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=49.1
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCCC--------C-----CCCCCHHHHhhcCCEEEEeccCC
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSVT--------Y-----PFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~~--------~-----~~~~~l~ell~~aDvV~l~~P~t 220 (330)
+.++++.|+|.|.+|++++..|...|+ +|.+++|+..+... . ....++.+.++++|+|+.++|..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 567999999999999999999999998 79999997643210 0 01234455677889888888754
No 207
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0011 Score=64.64 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=58.4
Q ss_pred ceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC---------------CCCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV---------------TYPFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~---------------~~~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
+++.|||+|.||+.+|..|...| .+|++.+|+..+.. .......+.+++++.|+|++++|..-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999888 89999999854311 111123567788888888888876522
Q ss_pred ccccccHHHH-hcCCCCcEEEEcCCCc
Q 020160 223 THHLINKQVL-LALGKKGVIINVGRGA 248 (330)
Q Consensus 223 t~~li~~~~l-~~mk~gailIN~~rg~ 248 (330)
. ..+ +.++.|.-.++++-..
T Consensus 82 ~------~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 82 L------TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred H------HHHHHHHHhCCCEEEcccCC
Confidence 2 222 2345566666665443
No 208
>PRK06046 alanine dehydrogenase; Validated
Probab=97.12 E-value=0.001 Score=63.71 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=61.1
Q ss_pred CceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIICCALTDQT 223 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~~P~t~~t 223 (330)
-+++||||.|.+|+..++.+.. .+. +|.+|+|++.... + ...+.+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4699999999999999998873 455 4678898864311 1 122567889887 99999999864
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 020160 224 HHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 224 ~~li~~~~l~~mk~gailIN~~r 246 (330)
..++..+ .+|+|+.+..+|.
T Consensus 205 ~P~~~~~---~l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAE---WIKEGTHINAIGA 224 (326)
T ss_pred CcEecHH---HcCCCCEEEecCC
Confidence 3566655 4589999888874
No 209
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.11 E-value=0.0017 Score=61.99 Aligned_cols=114 Identities=19% Similarity=0.134 Sum_probs=70.5
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEec
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICC 217 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~ 217 (330)
+..++|+|||.|.+|..+|..+...| .++..+|.+..... +. ....+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45789999999999999999998878 68888988664311 10 1123555 779999999998
Q ss_pred --cCCcc-cc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE--Ee
Q 020160 218 --ALTDQ-TH--------HLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCLL--RGEIGGAG--LD 270 (330)
Q Consensus 218 --P~t~~-t~--------~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~--~g~i~ga~--lD 270 (330)
|..+. ++ .++. .+.+....|.+++|+++-..=+-...+.+... ..++.|.+ +|
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 44331 11 1110 22344456888999986533222333333321 35666655 55
No 210
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.10 E-value=0.00066 Score=60.82 Aligned_cols=88 Identities=22% Similarity=0.331 Sum_probs=56.5
Q ss_pred CCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------C-CCC---CCCHHHHhhcCCEEEEeccCC
Q 020160 151 PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------T-YPF---YPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 151 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~-~~~---~~~l~ell~~aDvV~l~~P~t 220 (330)
|+..++.|+++.|||.|.+|..-++.|..+|++|+++++...+.. + ... ..+ .+.+..+|+|+.+.. .
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~-d 79 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATD-D 79 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCC-C
Confidence 344568999999999999999999999999999999988654210 0 100 011 344567777665533 2
Q ss_pred ccccccccHHHHhcCCCCcEEEEc
Q 020160 221 DQTHHLINKQVLLALGKKGVIINV 244 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~ 244 (330)
++ +|.......+...++||+
T Consensus 80 ~~----ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 80 EE----LNRRVAHAARARGVPVNV 99 (205)
T ss_pred HH----HHHHHHHHHHHcCCEEEE
Confidence 22 233444444445566664
No 211
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.09 E-value=0.0011 Score=63.22 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=54.5
Q ss_pred ceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCC---------CC--CCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPS---------VT--YPFYPDVCELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~---------~~--~~~~~~l~ell~~aDvV~l~~P~t~~t~~ 225 (330)
+++||||.|..|..-++.+.. ++. +|.+|+|++... .+ .....+.++.+++||+|+.++|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999998888764 665 789999986431 11 223568999999999999998876543 5
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcc
Q 020160 226 LINKQVLLALGKKGVIINVGRGAI 249 (330)
Q Consensus 226 li~~~~l~~mk~gailIN~~rg~~ 249 (330)
+++.+ .++||+.++.+|....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 66654 5789999999987543
No 212
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.08 E-value=0.0017 Score=62.03 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=65.7
Q ss_pred ceEEEEecChHHHHHHHHHHhC-CCEEEE-ECCCC-CCC---CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAF-GCCVSY-NSRNK-KPS---VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL 232 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~-~~~~~-~~~---~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l 232 (330)
.+|||||+|+||+.+++.+... ++++.+ +++++ ... .+.....+.++++.+.|+|++|+|..... ....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence 5899999999999999998765 788864 67774 211 12222346777888999999999865332 3445
Q ss_pred hcCCCCcEEEEcCCC--cccCHHH-HHHHHHc-CCce
Q 020160 233 LALGKKGVIINVGRG--AIIDEKE-MVGCLLR-GEIG 265 (330)
Q Consensus 233 ~~mk~gailIN~~rg--~~vd~~a-L~~aL~~-g~i~ 265 (330)
..++.|.-+|+..-- .+-+..+ +-++-++ |+..
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 556677767776421 1223333 4444453 5554
No 213
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.07 E-value=0.0016 Score=68.94 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=79.9
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~ 209 (330)
++|+|||.|.||..+|..+...|++|+.+|++++.. .+ .....++ +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 589999999999999999999999999999876431 00 0112345 35799
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN 274 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 274 (330)
||+|+=++|.+.+.+.-+-++.=+.++|+++|. |||. ++...|...+..- =.-.++--|.+
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~p-~r~ig~Hff~P 476 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSRP-EKVIGMHYFSP 476 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCCc-cceEEEeccCC
Confidence 999999999888877666666667789998775 4433 5566777776432 22356766653
No 214
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.05 E-value=0.0026 Score=67.07 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=77.6
Q ss_pred ceEEEEecChHHHHHHHHHH-hCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhh
Q 020160 159 KRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAA 208 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~ 208 (330)
++|+|||.|.||..+|..+. ..|++|+.+|.+++.. .+ .....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999987 5899999999876420 00 0112344 4679
Q ss_pred cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCCC
Q 020160 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFEN 274 (330)
Q Consensus 209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~~ 274 (330)
.||+|+=++|...+.+.-+-++.=+.++++++|....++ +....|..++.. .++ .++--|.+
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--~g~HffnP 446 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENV--IGLHYFSP 446 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccE--EEEecCCc
Confidence 999999999988887766656666778888877543332 445566666643 333 56665543
No 215
>PLN02477 glutamate dehydrogenase
Probab=97.04 E-value=0.011 Score=58.23 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=71.1
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEE-CCCCCC--CC------------------CCC--CCCCHHHH-hh
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN-SRNKKP--SV------------------TYP--FYPDVCEL-AA 208 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~-~~~~~~--~~------------------~~~--~~~~l~el-l~ 208 (330)
|.++.|++|.|.|||++|+.+|+.|...|++|++. |.+..- .. ++. ...+.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 45789999999999999999999999999999844 433110 00 000 01122332 34
Q ss_pred cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
.||+++-|. ..+.|+++...+++ -.+++-.+-+.+ .. +-.+.|+++.|.
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~ 329 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV 329 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence 688887654 45678888888875 457778888887 33 345777777764
No 216
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.011 Score=57.49 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=97.5
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------------CC-------------CCCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------------VT-------------YPFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~ell~~aDvV 213 (330)
++|.|+|.|-+|...+..+..+|++|+++|..+.+. ++ .....+.++.++.+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 589999999999999999999999999998765420 00 12235677889999999
Q ss_pred EEeccCCcccccccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe-cCCCCCCCCc----
Q 020160 214 IICCALTDQTHHLIN--------KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD-VFENEPDVPE---- 280 (330)
Q Consensus 214 ~l~~P~t~~t~~li~--------~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP~~~~---- 280 (330)
++++|..+...+-++ ++..+.++..+++|+=|.-.+=-.+.+.+-+....-.. -.+ ++.+|=+...
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 999987665455444 44566677779999988866655666665554443221 222 3455544322
Q ss_pred ccccCCceEEcCCCCCCCHHHHHHHHHHHHH
Q 020160 281 QLFALDNVVLSPHSAVFTPESFKDVCELAVA 311 (330)
Q Consensus 281 ~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ 311 (330)
..+.-+++++ |..+.++.+.+.++...
T Consensus 160 D~~~PdRIVi----G~~~~~a~~~~~ely~~ 186 (414)
T COG1004 160 DFLYPDRIVI----GVRSERAAAVLRELYAP 186 (414)
T ss_pred hccCCCeEEE----ccCChhHHHHHHHHHhh
Confidence 3445567774 55555444444444333
No 217
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.02 E-value=0.0012 Score=54.24 Aligned_cols=59 Identities=31% Similarity=0.420 Sum_probs=43.1
Q ss_pred ceEEEEec-ChHHHHHHHHHHh-CCCEEE-EECCCCCCC-------------CCCCCCCCHHHHhhcCCEEEEec
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEA-FGCCVS-YNSRNKKPS-------------VTYPFYPDVCELAANSDVLIICC 217 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~ell~~aDvV~l~~ 217 (330)
.+|+|+|+ |+||+.+++.+.. -|+++. ++++..... .+.....++++++..+|+++-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 47999999 9999999999987 788864 566665211 12334578999999999887765
No 218
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.01 E-value=0.0013 Score=62.53 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=69.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEeccCC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~P~t 220 (330)
++|+|||.|.+|..+|..+...|. +|..+|....... .. ....+.++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988776 8999988543211 00 11245665 79999999998732
Q ss_pred cc---cc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE--Ee
Q 020160 221 DQ---TH--------HLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGC--LLRGEIGGAG--LD 270 (330)
Q Consensus 221 ~~---t~--------~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~a--L~~g~i~ga~--lD 270 (330)
.. +| .++. .+.+....+.+++|+++-..=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 21 11 1111 112333457889999865433333334444 4445666665 66
No 219
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.01 E-value=0.0026 Score=58.90 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=64.4
Q ss_pred ceEEEEecChHHHHHHHHHHhC---CCEEE-EECCCCCCC----CCCCCCCCHHHH-hhcCCEEEEeccCCccccccccH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAF---GCCVS-YNSRNKKPS----VTYPFYPDVCEL-AANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~---G~~V~-~~~~~~~~~----~~~~~~~~l~el-l~~aDvV~l~~P~t~~t~~li~~ 229 (330)
++|||||||.||+.+++.+..- ++++. ++++.+... .....+.+++++ ....|+|+=|.... ..+.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-av~e---- 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-AIAE---- 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-HHHH----
Confidence 6899999999999999998753 35554 455554221 123446789997 57899999887532 2221
Q ss_pred HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHcC
Q 020160 230 QVLLALGKKGVIINVGRGAIID---EKEMVGCLLRG 262 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~vd---~~aL~~aL~~g 262 (330)
-..+-++.|.-++=.|-|.+-| ++.|.++.+++
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 1223345677777777888887 44555555543
No 220
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.00 E-value=0.0027 Score=67.13 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=78.7
Q ss_pred ceEEEEecChHHHHHHHHHH-hCCCEEEEECCCCCCCC----------------C-------------CCCCCCHHHHhh
Q 020160 159 KRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSV----------------T-------------YPFYPDVCELAA 208 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~ell~ 208 (330)
++|+|||.|.||..+|..+. ..|++|..+|.+++... + .....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 78999999998754200 0 0112344 4579
Q ss_pred cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCC
Q 020160 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFE 273 (330)
Q Consensus 209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~ 273 (330)
.||+|+=++|.+.+.+.-+-++.=+.++|+++|...++ -+....|.+.+.. .++ .++--|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS--~l~i~~la~~~~~p~r~--ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTS--SLPIGQIAAAAARPEQV--IGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHHhcCcccce--EEEecCC
Confidence 99999999998888776555666677899998865443 3556667776643 233 5666554
No 221
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.99 E-value=0.001 Score=67.13 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=50.4
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC-CCCCCHHHH--hhcCCEEEEeccCCc
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY-PFYPDVCEL--AANSDVLIICCALTD 221 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~-~~~~~l~el--l~~aDvV~l~~P~t~ 221 (330)
+.++.|++++|+|.|.+|++++..+...|++|.+++|+..+.. .. ....+++++ +.++|+|++|+|..-
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~ 402 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSV 402 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCC
Confidence 4467899999999999999999999999999999988654211 00 011122222 568899999998653
No 222
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.98 E-value=0.00063 Score=54.75 Aligned_cols=100 Identities=25% Similarity=0.331 Sum_probs=64.7
Q ss_pred eEEEEecChHHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCCCCCCHHHHhh--cCCEEEEeccCCcccccccc
Q 020160 160 RVGIVGLGSIGSEVAKRLEAF--GCCVS-YNSRNKKPS------VTYPFYPDVCELAA--NSDVLIICCALTDQTHHLIN 228 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~ 228 (330)
++||||+|.+|+.....+... ++++. ++|+++... .+...+.+++++++ +.|+|++++|........
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~-- 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA-- 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH--
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH--
Confidence 799999999999999888766 55664 678775431 24446789999998 799999999875444322
Q ss_pred HHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHcCCc
Q 020160 229 KQVLLALGKK-GVIINVG-RGAIIDEKEMVGCLLRGEI 264 (330)
Q Consensus 229 ~~~l~~mk~g-ailIN~~-rg~~vd~~aL~~aL~~g~i 264 (330)
...++ .| .+++.-- --++-+.+.|.++.++.+.
T Consensus 80 ~~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 80 KKALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp HHHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence 23333 33 4555521 1233445556666655443
No 223
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.97 E-value=0.0029 Score=66.90 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=77.5
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN 209 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~ 209 (330)
++|+|||.|.||..+|..+...|++|+.+|++++.. .+ .....++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 589999999999999999999999999999876421 00 0112344 45799
Q ss_pred CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCC
Q 020160 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFE 273 (330)
Q Consensus 210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~ 273 (330)
||+|+=++|..-+.+.-+-++.=+.++|+++|-...+ -++..+|...++. .++ .++=-|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS--~l~i~~ia~~~~~p~r~--ig~Hff~ 453 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTS--TISISLLAKALKRPENF--CGMHFFN 453 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHhhcCCcccE--EEEecCC
Confidence 9999999998888776555666677899988754433 3556667776643 233 4554443
No 224
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.92 E-value=0.0015 Score=62.76 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
..++++|||.|.+|+..+..+.. .+. +|.+|+|++.+.. +. ....++++++.+||+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35799999999999999888874 554 7899999865311 12 12468889999999999998764
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 020160 223 THHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 223 t~~li~~~~l~~mk~gailIN~~ 245 (330)
..++..+. +++|+.+.-++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 34665543 57887666643
No 225
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.91 E-value=0.002 Score=60.02 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=61.2
Q ss_pred ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCC-----C--CCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPS-----V--TYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~-----~--~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
++|||||+|.||+.+++.+... ++++. ++++..... . +...+.+++++-...|+|+.|.|.....+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e----- 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKE----- 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHH-----
Confidence 4899999999999999998865 56653 333322110 1 22345678887456999999998653322
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 020160 230 QVLLALGKKGVIINVGRGAIIDE---KEMVGCLLRGEI 264 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~vd~---~aL~~aL~~g~i 264 (330)
-....++.|.-++-.+-|.+.|. +.|.++.+++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 22333445554554555555543 445666655543
No 226
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.90 E-value=0.011 Score=55.80 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=72.8
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC--CCCCCCCCCCCHHHHhhcCCEEEEeccCCcccc---c------
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK--KPSVTYPFYPDVCELAANSDVLIICCALTDQTH---H------ 225 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~--~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~---~------ 225 (330)
.|++++|||-=.=-..++++|.+.|++|..+.-.. ....+.....+.+++++++|+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 37899999998888999999999999997543322 222344555577889999999999888754321 1
Q ss_pred -cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 226 -LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 226 -li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
-++.+.++.|+++..++ +|.+. .. +-+.+.+.++.
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~ 116 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK 116 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe
Confidence 13578899999998444 33332 22 33556677775
No 227
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.90 E-value=0.0033 Score=60.04 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=63.2
Q ss_pred CceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CC--CCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV---------TY--PFYPDVCELAANSDVLIICCALTDQTH 224 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~---------~~--~~~~~l~ell~~aDvV~l~~P~t~~t~ 224 (330)
-++++|||.|..|+.-++.+.. +.. +|.+|+|++.... +. ....+.++.+++||+|+.++|.+ .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence 4799999999999998887764 333 7899999876421 12 12468899999999999987644 4
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 020160 225 HLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~r 246 (330)
-+++.+ .+|||+.++.+|.
T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred ceeCHH---HcCCCcEEEecCC
Confidence 677665 4689999999984
No 228
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0021 Score=61.77 Aligned_cols=58 Identities=29% Similarity=0.363 Sum_probs=46.7
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCC-------CCCC---CCHHHHhhcCCEEEE
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT-------YPFY---PDVCELAANSDVLII 215 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-------~~~~---~~l~ell~~aDvV~l 215 (330)
++||||||-|..|+.++..++.+|++|++.++.+..... ...+ ..+.++.+.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999987764321 0112 257789999999975
No 229
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.88 E-value=0.0028 Score=57.03 Aligned_cols=91 Identities=24% Similarity=0.291 Sum_probs=61.9
Q ss_pred ceEEEEecChHHHHHHHHHHh--CCCE-EEEECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA--FGCC-VSYNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~--~G~~-V~~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
.+|||||+|.||+.+.+.++. .+++ +.+||++.++.. +.....+++|+++..|+++=|... +..+..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e~--- 76 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVREY--- 76 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHHH---
Confidence 479999999999999999984 2354 578888876532 222246899999999999887642 233322
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHH
Q 020160 230 QVLLALGKKGVIINVGRGAIIDEKE 254 (330)
Q Consensus 230 ~~l~~mk~gailIN~~rg~~vd~~a 254 (330)
..+.+|.|--+|=+|-|.+.|+.-
T Consensus 77 -~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 77 -VPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred -hHHHHhcCCCEEEEechhccChHH
Confidence 233456665566666788876554
No 230
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.80 E-value=0.0029 Score=61.88 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=65.1
Q ss_pred CceEEEEecChHHHHHHHHHHh-CC-C-EEEEECCCCCCCC-----------C---CCCCCCHHHHhhcCCEEEEeccCC
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEA-FG-C-CVSYNSRNKKPSV-----------T---YPFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~-~G-~-~V~~~~~~~~~~~-----------~---~~~~~~l~ell~~aDvV~l~~P~t 220 (330)
-+++||||.|..++.-++.+.. +. . +|.+|+|++.... + .....+.++.+++||+|+.+++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4799999999999999988775 42 4 7899999875311 1 223578999999999999998765
Q ss_pred c---cccccccHHHHhcCCCCcEEEEcCCC
Q 020160 221 D---QTHHLINKQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 221 ~---~t~~li~~~~l~~mk~gailIN~~rg 247 (330)
+ .+.-++..+ .+|||+.++.+|.-
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~ 261 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAAC 261 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCcc
Confidence 4 344677654 46899988877653
No 231
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.79 E-value=0.011 Score=58.89 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=68.4
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---CCC---------------------------CCCCC
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---VTY---------------------------PFYPD 202 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~~---------------------------~~~~~ 202 (330)
|.+|.|+++.|.|+|++|...|+.|..+|++|++++.+.... .+. ....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 567999999999999999999999999999998754421110 000 00112
Q ss_pred HHHHh-hcCCEEEEeccCCccccccccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 020160 203 VCELA-ANSDVLIICCALTDQTHHLINKQVLLALGK-KG-VIINVGRGAIIDEKEMVGCLLRGEI 264 (330)
Q Consensus 203 l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk~-ga-ilIN~~rg~~vd~~aL~~aL~~g~i 264 (330)
.++++ ..||+++-| .+++.|+++...+++. |. +++--+.| .+..++. +.|.++.|
T Consensus 303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI 360 (444)
T PRK14031 303 GARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKI 360 (444)
T ss_pred CcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCc
Confidence 33432 458887655 3567888888888864 44 44444555 6666655 44555544
No 232
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0037 Score=59.95 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=65.8
Q ss_pred CceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIICCALTDQT 223 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~~P~t~~t 223 (330)
-+++||||.|..+..-++.++. ++. +|.+|+|+++... + .....+.++.++.||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4689999999999999998874 555 6889999876421 1 2346789999999999999998765
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 020160 224 HHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 224 ~~li~~~~l~~mk~gailIN~~r 246 (330)
-++..+. +|||+.+..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 5666654 579999999984
No 233
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.77 E-value=0.0027 Score=56.68 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=33.4
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|.+++|.|||+|.+|..+|+.|...|. +++.+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 45899999999999999999999999998 78888765
No 234
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.76 E-value=0.0025 Score=59.08 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=71.1
Q ss_pred EEEEec-ChHHHHHHHHHHhCC----CEEEEECCCCCCCC-----------CC-----CCCCCHHHHhhcCCEEEEeccC
Q 020160 161 VGIVGL-GSIGSEVAKRLEAFG----CCVSYNSRNKKPSV-----------TY-----PFYPDVCELAANSDVLIICCAL 219 (330)
Q Consensus 161 vgIiG~-G~IG~~~A~~l~~~G----~~V~~~~~~~~~~~-----------~~-----~~~~~l~ell~~aDvV~l~~P~ 219 (330)
|+|||. |.+|..+|..+...| .+|..+|...+... .. ....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 68999998764321 00 1124567889999999996521
Q ss_pred C--c-ccc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCceEEE-EecC
Q 020160 220 T--D-QTH--------HLIN--KQVLLALGKKGVIINVGRGAIIDEKE--MVGC--LLRGEIGGAG-LDVF 272 (330)
Q Consensus 220 t--~-~t~--------~li~--~~~l~~mk~gailIN~~rg~~vd~~a--L~~a--L~~g~i~ga~-lDV~ 272 (330)
. + .++ .++. .+.+....|.+++||++ ..+|.-+ +.+. +...++.|.+ +|..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 1 1 011 0110 22344455899999995 4455443 4344 4567788888 8864
No 235
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.75 E-value=0.038 Score=49.35 Aligned_cols=41 Identities=34% Similarity=0.395 Sum_probs=36.7
Q ss_pred CCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 151 PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 151 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
|...++.|+++.|||.|.+|...++.|...|.+|+++++..
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45567999999999999999999999999999999998754
No 236
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.74 E-value=0.0066 Score=60.48 Aligned_cols=106 Identities=15% Similarity=0.203 Sum_probs=70.1
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEE-CCCCCC--------C-------------CCCC-----CCCCHHH
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN-SRNKKP--------S-------------VTYP-----FYPDVCE 205 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~-~~~~~~--------~-------------~~~~-----~~~~l~e 205 (330)
+.++.|++|.|.|+|++|+.+|+.|..+|++|++. |.+..- . .++. ...+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45689999999999999999999999999999877 421100 0 0000 0113334
Q ss_pred Hhh-cCCEEEEeccCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 206 LAA-NSDVLIICCALTDQTHHLINKQVLLALG--KKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 206 ll~-~aDvV~l~~P~t~~t~~li~~~~l~~mk--~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
++. .||+++-|.. .+.|+.+....++ .-.+++-.+-|.+ .. +-.+.|.++.|.
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~-~A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TP-EAIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CH-HHHHHHHHCCcE
Confidence 443 6898887653 4567777666663 2346777777887 33 345677777664
No 237
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.72 E-value=0.006 Score=57.87 Aligned_cols=92 Identities=21% Similarity=0.287 Sum_probs=59.8
Q ss_pred ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCC-------------CC--CCCCCHHHHhhcCCEEEEeccCCc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSV-------------TY--PFYPDVCELAANSDVLIICCALTD 221 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~-------------~~--~~~~~l~ell~~aDvV~l~~P~t~ 221 (330)
++|+|||.|.+|+.+|..|...| .+|..+|+..+... +. .....-.+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 48999999999999999999888 47999998765421 00 011122345799999999876432
Q ss_pred c---cc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 020160 222 Q---TH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDE 252 (330)
Q Consensus 222 ~---t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~ 252 (330)
. +| .++ | .+.+....|.+++|+++ ..+|.
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~ 122 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV 122 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence 1 11 111 1 12344456788999986 44443
No 238
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.67 E-value=0.0027 Score=54.48 Aligned_cols=41 Identities=34% Similarity=0.384 Sum_probs=36.8
Q ss_pred CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190 (330)
Q Consensus 150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~ 190 (330)
+|+..+++|+++.|||.|.+|...++.|...|++|+++++.
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 45667899999999999999999999999999999988654
No 239
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.65 E-value=0.0066 Score=57.56 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=62.4
Q ss_pred CceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIICCALTDQT 223 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~~P~t~~t 223 (330)
-+++||||.|..|..-++.+.. +.. +|.+|+|++.+.. + .....+.++.+.+||+|+.++|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 5799999999999988887764 444 6899999876421 2 122468999999999999988754
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 020160 224 HHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 224 ~~li~~~~l~~mk~gailIN~~r 246 (330)
..++..+ .+|||+.+.-+|.
T Consensus 194 ~P~~~~~---~l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRK---YLGDEYHVNLAGS 213 (301)
T ss_pred CcEecHH---HcCCCceEEecCC
Confidence 4677665 4578988777764
No 240
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.64 E-value=0.0067 Score=57.13 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=33.1
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCC
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNK 191 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~ 191 (330)
+.|+++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5789999999999999999999999996 99999875
No 241
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.63 E-value=0.007 Score=57.78 Aligned_cols=89 Identities=24% Similarity=0.327 Sum_probs=57.6
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------CC-------CCCCCHHHHhhcCCEEEEeccC-
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------TY-------PFYPDVCELAANSDVLIICCAL- 219 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------~~-------~~~~~l~ell~~aDvV~l~~P~- 219 (330)
++++|+|||.|.+|..+|-.+...|. ++..+|.+..... .. ....+-.+.+++||+|+++.-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 57899999999999999999988887 7889998655321 00 0011223568999999997533
Q ss_pred -Cc-ccc-ccc--c----HH---HHhcCCCCcEEEEcC
Q 020160 220 -TD-QTH-HLI--N----KQ---VLLALGKKGVIINVG 245 (330)
Q Consensus 220 -t~-~t~-~li--~----~~---~l~~mk~gailIN~~ 245 (330)
.+ .+| .++ | .+ .+..-.|.+++|+++
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 11 122 111 1 11 222234688999987
No 242
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.61 E-value=0.0065 Score=58.71 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=61.6
Q ss_pred CceEEEEecChHHHHHHHHHH-hCCC-EEEEECCCCCCCC---------C--CCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLE-AFGC-CVSYNSRNKKPSV---------T--YPFYPDVCELAANSDVLIICCALTDQTH 224 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~ 224 (330)
-++++|||.|..+..-++.+. -+.. +|.+|+|++.... + +....++++.+++||+|+.++|.++ ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 479999999999988887665 3444 6889999876421 1 2225789999999999999987432 22
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 020160 225 HLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~r 246 (330)
-++..+ .+|||+.+.-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 456554 4689998887663
No 243
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.59 E-value=0.0075 Score=60.04 Aligned_cols=142 Identities=24% Similarity=0.345 Sum_probs=85.6
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---------CCCCCC--CCHHHHhhcCCEEEEeccCCcccc
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---------VTYPFY--PDVCELAANSDVLIICCALTDQTH 224 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~ell~~aDvV~l~~P~t~~t~ 224 (330)
..|++|.|+|+|.-|.++|+.|+..|++|+++|.++... .+.... ....+....+|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 459999999999999999999999999999999776651 111111 1122568889999886 4333333
Q ss_pred cccc------------HHHHhcC-CCCcEEEEcC-CCcccCHHHHHHHHHc--------CCceEEEEecCCCCCCCCc--
Q 020160 225 HLIN------------KQVLLAL-GKKGVIINVG-RGAIIDEKEMVGCLLR--------GEIGGAGLDVFENEPDVPE-- 280 (330)
Q Consensus 225 ~li~------------~~~l~~m-k~gailIN~~-rg~~vd~~aL~~aL~~--------g~i~ga~lDV~~~EP~~~~-- 280 (330)
.++. -+.+-+. ++..++-=|| -|+--...-+...|++ |.|...++|+.++++.++-
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~~d~~V 163 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAEPADVYV 163 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccCCCCEEE
Confidence 3222 1223332 2333444444 5776555555555554 4677888999987442211
Q ss_pred -c--cccCCce-EEcCCCCCCC
Q 020160 281 -Q--LFALDNV-VLSPHSAVFT 298 (330)
Q Consensus 281 -~--L~~~~nv-ilTPHia~~t 298 (330)
+ =|++..+ -+.|++|-.+
T Consensus 164 lElSSfQL~~~~~~~P~iavil 185 (448)
T COG0771 164 LELSSFQLETTSSLRPEIAVIL 185 (448)
T ss_pred EEccccccccCccCCccEEEEe
Confidence 1 1233333 5677776543
No 244
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.58 E-value=0.012 Score=54.59 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=46.3
Q ss_pred ceEEEEec-ChHHHHHHHHHHhC-CCEEE-EECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCC
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAF-GCCVS-YNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t 220 (330)
.+|+|+|+ |.||+.+++.+... ++++. ++++.+.... +...+.+++++++.+|+|+.++|..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH
Confidence 48999998 99999999998764 68875 4676553321 2334578999998999999777533
No 245
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.006 Score=60.36 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=63.0
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCC-----CCCCCHHHHhhcCCEEEEeccCCccccc-------
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-----PFYPDVCELAANSDVLIICCALTDQTHH------- 225 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~ell~~aDvV~l~~P~t~~t~~------- 225 (330)
.++|.|||+|.+|.++|+.|+..|++|.++|++....... ......+.+..++|+|+.+.+..+. ..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~-~~~l~~A~~ 81 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKE-HPWVQAAIA 81 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCC-cHHHHHHHH
Confidence 4689999999999999999999999999999765432110 1112333445789988877654432 22
Q ss_pred ----cccHHH--Hhc--CCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 020160 226 ----LINKQV--LLA--LGK-KGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 226 ----li~~~~--l~~--mk~-gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
+++... +.. +.+ ..+=|--+-|+.--.+=+...|+.
T Consensus 82 ~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 82 SHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 222211 111 112 234444455776666666677764
No 246
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.55 E-value=0.0019 Score=52.67 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=51.4
Q ss_pred eEEEEe-cChHHHHHHHHHHh-CCCEEE-EECCCCCCCC----CCC---------CCCCHHHHhhcCCEEEEeccCCccc
Q 020160 160 RVGIVG-LGSIGSEVAKRLEA-FGCCVS-YNSRNKKPSV----TYP---------FYPDVCELAANSDVLIICCALTDQT 223 (330)
Q Consensus 160 ~vgIiG-~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~~----~~~---------~~~~l~ell~~aDvV~l~~P~t~~t 223 (330)
+|+||| .|.+|+.+.++|.. ..+++. ++.++..... ... ....-.+.+.++|+|++|+|.....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 689999 99999999999986 345654 4444441211 000 0111224459999999999865433
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 020160 224 HHLINKQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 224 ~~li~~~~l~~mk~gailIN~~rg 247 (330)
+.. ... +++|..+|+.|.-
T Consensus 81 ~~~--~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 81 ELA--PKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHH--HHH---HHTTSEEEESSST
T ss_pred HHH--HHH---hhCCcEEEeCCHH
Confidence 321 222 5789999998753
No 247
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.49 E-value=0.0031 Score=59.19 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=46.8
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------C----CCCC---CCHHHHhhcCCEEEEeccCC
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------T----YPFY---PDVCELAANSDVLIICCALT 220 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~----~~~~---~~l~ell~~aDvV~l~~P~t 220 (330)
+.|+++.|||.|.+|++++..|...|+ +|.+++|+.++.. + .... .++.+.+.++|+|+.++|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 578999999999999999999999998 6999999764321 0 0001 12334456778887777754
No 248
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.44 E-value=0.0091 Score=56.50 Aligned_cols=58 Identities=26% Similarity=0.283 Sum_probs=43.1
Q ss_pred ceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC--C--CCCCHHHHhhcCCEEEEec
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TY--P--FYPDVCELAANSDVLIICC 217 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~--~--~~~~l~ell~~aDvV~l~~ 217 (330)
++|+|||.|.+|..+|..+...|. +|..+|+..+... .. . ...+. +.++.||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 689999999999999999987665 8999998654311 00 0 11344 4589999999986
No 249
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.44 E-value=0.015 Score=49.78 Aligned_cols=89 Identities=13% Similarity=0.173 Sum_probs=65.5
Q ss_pred CCceEEEEe--cChHHHHHHHHHHhCCCEEEEECCCCC--CC----------------CCCCCCCCHHHHhhcCCEEEEe
Q 020160 157 GGKRVGIVG--LGSIGSEVAKRLEAFGCCVSYNSRNKK--PS----------------VTYPFYPDVCELAANSDVLIIC 216 (330)
Q Consensus 157 ~g~~vgIiG--~G~IG~~~A~~l~~~G~~V~~~~~~~~--~~----------------~~~~~~~~l~ell~~aDvV~l~ 216 (330)
.|+||++|| -+++.++++..+..||+++.+..+..- +. .......++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 389999999999999999988877551 11 0123357899999999998775
Q ss_pred ccCC---cc--------ccccccHHHHhcCCCCcEEEEcC
Q 020160 217 CALT---DQ--------THHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 217 ~P~t---~~--------t~~li~~~~l~~mk~gailIN~~ 245 (330)
.-.+ .+ ....++.+.++.+|++++|.-+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 4331 11 11467889999999999999885
No 250
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.44 E-value=0.0075 Score=57.73 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=46.1
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEec
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICC 217 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~ 217 (330)
+..+||+|||.|.+|..+|..+...|. +|..+|.+++... +. ....+. +.++.||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 456899999999999999999888785 8889998775311 10 112355 5679999999976
No 251
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.39 E-value=0.0091 Score=57.58 Aligned_cols=38 Identities=32% Similarity=0.423 Sum_probs=33.6
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK 191 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~ 191 (330)
..|++++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35899999999999999999999999998 788777753
No 252
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.38 E-value=0.0075 Score=60.41 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=67.9
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCC--CCHHHHhhcCCEEEEeccCCccc
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFY--PDVCELAANSDVLIICCALTDQT 223 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~--~~l~ell~~aDvV~l~~P~t~~t 223 (330)
+.+++++|+|+|..|.++|+.|+..|++|.++|.++.... +.... ....+.+.++|+|+.. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 6789999999999999999999999999999997653210 21111 1223556889998886 544433
Q ss_pred cccc-----------cH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160 224 HHLI-----------NK-QVL-LALGKKGVIINVGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 224 ~~li-----------~~-~~l-~~mk~gailIN~~rg~~vd~~aL~~aL~~g 262 (330)
...+ ++ +.+ +..+...+-|--+.|+.--.+-+...|+..
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 2222 11 122 222323455555668877777777777643
No 253
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.38 E-value=0.018 Score=53.01 Aligned_cols=88 Identities=15% Similarity=0.229 Sum_probs=60.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK 238 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g 238 (330)
.++-|+|.|.+++++|+.++.+|++|+++|.++...... ....++.+....| .+.+..+.+.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~~~~ 162 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPED--------LPDGVATLVTDEP----------EAEVAEAPPG 162 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccccc--------CCCCceEEecCCH----------HHHHhcCCCC
Confidence 489999999999999999999999999998765421110 0123332221111 2233345567
Q ss_pred cEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160 239 GVIINVGRGAIIDEKEMVGCLLRGEI 264 (330)
Q Consensus 239 ailIN~~rg~~vd~~aL~~aL~~g~i 264 (330)
..+|=+.++.-.|.+.|..+|.+...
T Consensus 163 t~vvi~th~h~~D~~~L~~aL~~~~~ 188 (246)
T TIGR02964 163 SYFLVLTHDHALDLELCHAALRRGDF 188 (246)
T ss_pred cEEEEEeCChHHHHHHHHHHHhCCCC
Confidence 77777789999999999999954443
No 254
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.38 E-value=0.023 Score=56.92 Aligned_cols=107 Identities=20% Similarity=0.286 Sum_probs=75.9
Q ss_pred cCCceEEEEec----ChHHHHHHHHHHhCCC--EEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160 156 LGGKRVGIVGL----GSIGSEVAKRLEAFGC--CVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 156 l~g~~vgIiG~----G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 229 (330)
++-++|.|||. |++|..+.+.++..|+ +|+.+++......+...+.+++|+-...|++++++|.. .+..++.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l~- 82 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVVE- 82 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHH-HHHHHHH-
Confidence 56689999999 8899999999999887 68888877665567777889999988899999999954 3333432
Q ss_pred HHHhcCCCCcEEE-EcCCCcc-----cCHHHHHHHHHcCCce
Q 020160 230 QVLLALGKKGVII-NVGRGAI-----IDEKEMVGCLLRGEIG 265 (330)
Q Consensus 230 ~~l~~mk~gailI-N~~rg~~-----vd~~aL~~aL~~g~i~ 265 (330)
+. ....-.+++| .-+-++. -.++++.+..+++.+.
T Consensus 83 e~-~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 83 EC-GEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HH-HhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 22 3344444544 3332232 2357788888777665
No 255
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.35 E-value=0.00098 Score=60.00 Aligned_cols=132 Identities=19% Similarity=0.218 Sum_probs=83.1
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------C-----CC-------------CCCC
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------V-----TY-------------PFYP 201 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~-----~~-------------~~~~ 201 (330)
..=+.|+|||.|.||+.+|+.+...|+.|..+|++.+.. + .. ....
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 345789999999999999999999999999999876520 0 00 0123
Q ss_pred CHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc
Q 020160 202 DVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE 280 (330)
Q Consensus 202 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~ 280 (330)
++.++++.+|+|+=++-.+-+.+.=+-++.=..+|+.+++. |+|+ +....+..+++.... .++|-.|.+-|
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP---- 160 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP---- 160 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch----
Confidence 55667777887776654443332222223333467777654 5555 445667777766544 37898888766
Q ss_pred ccccCCceEEcCCCCC
Q 020160 281 QLFALDNVVLSPHSAV 296 (330)
Q Consensus 281 ~L~~~~nvilTPHia~ 296 (330)
...+=.||=|+..+-
T Consensus 161 -vMKLvEVir~~~TS~ 175 (298)
T KOG2304|consen 161 -VMKLVEVIRTDDTSD 175 (298)
T ss_pred -hHHHhhhhcCCCCCH
Confidence 233334555554433
No 256
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.31 E-value=0.032 Score=55.60 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=65.3
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCCCC--CCCC----------------------------CCCC
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNKKP--SVTY----------------------------PFYP 201 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~--~~~~----------------------------~~~~ 201 (330)
+.++.|+|+.|=|+|++|+..|+.|..+|++|+. .|.+..- ..+. ..+.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 5679999999999999999999999999999984 4433100 0000 0001
Q ss_pred CHHHHh-hcCCEEEEeccCCccccccccHHHHhcC-CCCcE-EEEcCCCcccCHHHHHHHHHcCCce
Q 020160 202 DVCELA-ANSDVLIICCALTDQTHHLINKQVLLAL-GKKGV-IINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 202 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~m-k~gai-lIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
+-++++ -.||+.+-|. +.+.|+.+..+.+ +.++. ++--+-+.+ ..+ -.+.|.++.|.
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~ 371 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVI 371 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcE
Confidence 112222 3578776553 5667887776655 44454 444455554 333 44666666654
No 257
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.31 E-value=0.015 Score=57.77 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=69.0
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEE--------ECCCCCCC-C--------------------CC--CCCC
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY--------NSRNKKPS-V--------------------TY--PFYP 201 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~--------~~~~~~~~-~--------------------~~--~~~~ 201 (330)
|.++.|+||.|=|+|++|+..|+.|..+|++|++ |++..-.. . ++ ....
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5579999999999999999999999999999988 55321110 0 00 0011
Q ss_pred CHHHHh-hcCCEEEEeccCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 202 DVCELA-ANSDVLIICCALTDQTHHLINKQVLLALG--KKGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 202 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk--~gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
+-++++ ..||+++-|. +.+.|+.+....+. .-.+++-.+-| .+..+|- +.|.++.|.
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~ 362 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL 362 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence 223333 3488776554 66778887777772 23466666777 5555543 666666664
No 258
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.30 E-value=0.0023 Score=53.80 Aligned_cols=106 Identities=21% Similarity=0.249 Sum_probs=69.7
Q ss_pred EEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCC-----C---------CCCCHHHHhhcCCEEEEeccCCcc
Q 020160 161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTY-----P---------FYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~-----~---------~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
|.|+|.|.||.-+|.+|+..|.+|..+.++.... .+. . ......+.....|+|++++...+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~- 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ- 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc-
Confidence 6899999999999999999999999988876100 010 0 01112346788999999986543
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160 223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL 269 (330)
Q Consensus 223 t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l 269 (330)
++..+. .....+++++.++-.--| +-.++.+.+.+...++.++..
T Consensus 80 ~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 80 LEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp HHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred hHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 343433 355666777677766555 445677777775666654443
No 259
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.30 E-value=0.0084 Score=54.42 Aligned_cols=147 Identities=23% Similarity=0.175 Sum_probs=83.9
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------CCC-----------------C--C--
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------SVT-----------------Y--P-- 198 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~--~-- 198 (330)
..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-. ..+ . .
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 35899999999999999999999999998 66666543210 000 0 0
Q ss_pred --C--CCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160 199 --F--YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN 274 (330)
Q Consensus 199 --~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 274 (330)
. ..++.++++++|+|+.|+. +..++.++++...+ .+.-+|.++-. | ..|.. -++.+
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~~--------------g-~~g~v-~~~~p 156 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAVL--------------G-FEGQV-TVFIP 156 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEec--------------c-CEEEE-EEECC
Confidence 0 1234567888998888764 56677777654443 24455665421 1 12221 12211
Q ss_pred C--CCCCcccccC-Cce-EEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160 275 E--PDVPEQLFAL-DNV-VLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321 (330)
Q Consensus 275 E--P~~~~~L~~~-~nv-ilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~ 321 (330)
. |- ..-++.. +.- .-++..++...-...-++.+++..+.+++.|.+
T Consensus 157 ~~~~c-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~ 206 (228)
T cd00757 157 GEGPC-YRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIG 206 (228)
T ss_pred CCCCC-ccccCCCCCCCCCCccccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 1 10 0011111 000 122334455544566777888888999998874
No 260
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.29 E-value=0.0075 Score=55.50 Aligned_cols=104 Identities=25% Similarity=0.327 Sum_probs=69.4
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEE--------CCCCCC---------C-CC-CCCC----------CCHH-
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN--------SRNKKP---------S-VT-YPFY----------PDVC- 204 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~--------~~~~~~---------~-~~-~~~~----------~~l~- 204 (330)
++.|+++.|-|+|.+|+.+|+.|...|++|++. ++..-. . .. ...+ .+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 589999999999999999999999999998765 221110 0 01 1111 1222
Q ss_pred HHh-hcCCEEEEeccCCccccccccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 205 ELA-ANSDVLIICCALTDQTHHLINKQVLL-ALGKKG-VIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 205 ell-~~aDvV~l~~P~t~~t~~li~~~~l~-~mk~ga-ilIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
+++ ..||+++-|. ..+.|+.+... .+++++ +++-.+.+.+- .++.. .|.++.|.
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL 165 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence 555 5799999874 34568888888 787665 55566666664 44544 88888875
No 261
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.28 E-value=0.012 Score=56.82 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=54.3
Q ss_pred ceEEEEec-ChHHHHHHHHHHhC-CCEEE-EECCCCCCCC------C---C--C-CCC--CHHHHhhcCCEEEEeccCCc
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAF-GCCVS-YNSRNKKPSV------T---Y--P-FYP--DVCELAANSDVLIICCALTD 221 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~------~---~--~-~~~--~l~ell~~aDvV~l~~P~t~ 221 (330)
++|+|+|. |.+|+.+++.|... +.++. .++++..... + . . ... +.++++.++|+|++|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 47999998 99999999999976 66777 3343321110 1 0 0 011 45566678999999999653
Q ss_pred cccccccHHHHhc-CCCCcEEEEcCCC
Q 020160 222 QTHHLINKQVLLA-LGKKGVIINVGRG 247 (330)
Q Consensus 222 ~t~~li~~~~l~~-mk~gailIN~~rg 247 (330)
. .+.... .+.|..+|+.|..
T Consensus 81 s------~~~~~~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 81 S------AELAPELLAAGVKVIDLSAD 101 (346)
T ss_pred H------HHHHHHHHhCCCEEEeCChh
Confidence 3 233332 2568899998843
No 262
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.25 E-value=0.019 Score=54.48 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=69.7
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------CCCC-----------CCCCCHHHHhhcCCEEEEeccCCc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------SVTY-----------PFYPDVCELAANSDVLIICCALTD 221 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-----------~~~~~l~ell~~aDvV~l~~P~t~ 221 (330)
++|+|+|.|.||.-+|-+|...|.+|..+.|+... ..+. .......+....+|+|++++=..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 58999999999999999999999999988886421 1111 00011112346789999987433
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160 222 QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL 269 (330)
Q Consensus 222 ~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l 269 (330)
++...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 233332 3455667788877766444 345666777776666665443
No 263
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.23 E-value=0.01 Score=57.77 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=44.2
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC---CCCC---CHHHHhhcCCEEEE
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY---PFYP---DVCELAANSDVLII 215 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~---~~~~---~l~ell~~aDvV~l 215 (330)
.++|||||-|..|+.+++.++.+|++|+++++++.... .. ..+. .+.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 37899999999999999999999999999988764321 00 0112 36678889998764
No 264
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.20 E-value=0.026 Score=55.77 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=63.2
Q ss_pred ccCCceEEEEec----------ChHHHHHHHHHHhCCCEEEEECCCCCCCC--CCCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 155 KLGGKRVGIVGL----------GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--TYPFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 155 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
.+.|++|+|+|+ ..-...+++.|...|.+|.+||+...... ......++++.+++||.|+++.+.. +
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~-~ 388 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHD-E 388 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCH-H
Confidence 368999999998 55778999999999999999999754321 1122468889999999999998654 3
Q ss_pred ccccccHHHHh-cCCCCcEEEEc
Q 020160 223 THHLINKQVLL-ALGKKGVIINV 244 (330)
Q Consensus 223 t~~li~~~~l~-~mk~gailIN~ 244 (330)
.+. ++-+.+. .|+ ..+++++
T Consensus 389 ~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 389 FKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred Hhc-cCHHHHHHhcC-CCEEEeC
Confidence 333 3434443 455 4578874
No 265
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.15 E-value=0.095 Score=49.81 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=62.5
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-----------CC--CCCCCCHHHHhhcCCEEEEec----
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-----------VT--YPFYPDVCELAANSDVLIICC---- 217 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------~~--~~~~~~l~ell~~aDvV~l~~---- 217 (330)
+.|.+|+++|= +++.++++..+..+|++|.+..+..-.. .+ +....++++.++++|+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 67899999996 8899999999999999998877643221 11 123578999999999998741
Q ss_pred cCCc---c-----ccccccHHHHhcCCCCcEEEEcC
Q 020160 218 ALTD---Q-----THHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 218 P~t~---~-----t~~li~~~~l~~mk~gailIN~~ 245 (330)
.... + -..-++++.++.+|+++++.-+.
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 1100 0 12345666677777777766653
No 266
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.14 E-value=0.048 Score=52.01 Aligned_cols=90 Identities=8% Similarity=0.066 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCCC-----------------------CC-------------CCCCC--CHHHHhhcC
Q 020160 169 IGSEVAKRLEAFGCCVSYNSRNKKPS-----------------------VT-------------YPFYP--DVCELAANS 210 (330)
Q Consensus 169 IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------------~~-------------~~~~~--~l~ell~~a 210 (330)
||..+|..+...|++|..+|++++.. .+ ..... +..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 68899999999999999999987310 00 00111 255788999
Q ss_pred CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160 211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260 (330)
Q Consensus 211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~ 260 (330)
|+|+-++|.+.+.+.-+-.+..+.++|+++|.. .-+.+....|.+.+.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcC
Confidence 999999999999887776777788999999844 445566677777664
No 267
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.0045 Score=56.22 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=47.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------CC-------CCCCCHHHH-hhcCCEEEEeccCCc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------TY-------PFYPDVCEL-AANSDVLIICCALTD 221 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~~-------~~~~~l~el-l~~aDvV~l~~P~t~ 221 (330)
|++.|+|+|.+|..+|+.|...|++|+..++.+.... .. .....|.++ +.++|+++.++..+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 5899999999999999999999999999888764311 11 111235554 788999998886543
No 268
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.022 Score=55.78 Aligned_cols=103 Identities=26% Similarity=0.366 Sum_probs=70.8
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC------------------CCC------CCCCCCCHHHHh-
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK------------------PSV------TYPFYPDVCELA- 207 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~------------------~~~------~~~~~~~l~ell- 207 (330)
+.++.|+||.|=|+|++|+..|+.|...|.+|++++.+.. ... +..+ .+-++++
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~-i~~~e~~~ 280 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEY-ITNEELLE 280 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceE-cccccccc
Confidence 4458999999999999999999999999999998876654 100 1111 1224544
Q ss_pred hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160 208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE 263 (330)
Q Consensus 208 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~ 263 (330)
..||+++=| .+.+.|+.+..++++-. +++-.+-|.+- .+|--..++.|-
T Consensus 281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGI 329 (411)
T COG0334 281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGI 329 (411)
T ss_pred ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCC
Confidence 358877544 46778888888888865 77788887765 333333334443
No 269
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.07 E-value=0.02 Score=55.31 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=42.6
Q ss_pred ceEEEEecChHHHHHHHHHHh-CCCEEEE-ECCCCCC---------C---------------CCCCCCCCHHHHhhcCCE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA-FGCCVSY-NSRNKKP---------S---------------VTYPFYPDVCELAANSDV 212 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~-~~~~~~~---------~---------------~~~~~~~~l~ell~~aDv 212 (330)
.+|||+|+|+||+.+++.+.. -++++.+ +++.+.. . .+.....++++++..+|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 379999999999999998874 4678765 4433210 0 011112467788889999
Q ss_pred EEEeccCC
Q 020160 213 LIICCALT 220 (330)
Q Consensus 213 V~l~~P~t 220 (330)
|+.|.|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998754
No 270
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.07 E-value=0.052 Score=51.60 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=48.4
Q ss_pred cCCceEEEEec---ChHHHHHHHHHHhCCCEEEEECCCCCCCCC---CCCCCCHHHHhhcCCEEEEe
Q 020160 156 LGGKRVGIVGL---GSIGSEVAKRLEAFGCCVSYNSRNKKPSVT---YPFYPDVCELAANSDVLIIC 216 (330)
Q Consensus 156 l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~---~~~~~~l~ell~~aDvV~l~ 216 (330)
+.|++|++||= +++.++++..+..||++|.+..+..-.... .....++++.++++|+|...
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEEC
Confidence 68999999997 599999999999999999887764422111 23457899999999998764
No 271
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.06 E-value=0.11 Score=50.09 Aligned_cols=91 Identities=9% Similarity=0.012 Sum_probs=63.5
Q ss_pred ccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEe
Q 020160 155 KLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIIC 216 (330)
Q Consensus 155 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~ 216 (330)
.+.|++|++||=+ ++.++++..+..+|++|.++.+..-.. .+ +....++++.++++|+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3789999999986 678899999999999998877643211 12 12357899999999999873
Q ss_pred c----cCC-c--c------ccccccHHHHhcC-CCCcEEEEcC
Q 020160 217 C----ALT-D--Q------THHLINKQVLLAL-GKKGVIINVG 245 (330)
Q Consensus 217 ~----P~t-~--~------t~~li~~~~l~~m-k~gailIN~~ 245 (330)
. ... + . ....++.+.++.. |++++|.-+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 100 0 0 1224677788876 7888888764
No 272
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.06 E-value=0.017 Score=52.93 Aligned_cols=37 Identities=32% Similarity=0.461 Sum_probs=31.8
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35899999999999999999999999997 56666654
No 273
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.06 E-value=0.0092 Score=54.88 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=31.5
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSR 189 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~ 189 (330)
..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45899999999999999999999999997 6666654
No 274
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.04 E-value=0.043 Score=51.06 Aligned_cols=61 Identities=26% Similarity=0.306 Sum_probs=43.4
Q ss_pred ceEEEEe-cChHHHHHHHHHHh-CCCEEE-EECCCCCCC-------------CCCCCCCCHHHHhhcCCEEEEeccC
Q 020160 159 KRVGIVG-LGSIGSEVAKRLEA-FGCCVS-YNSRNKKPS-------------VTYPFYPDVCELAANSDVLIICCAL 219 (330)
Q Consensus 159 ~~vgIiG-~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~ell~~aDvV~l~~P~ 219 (330)
.+|+|+| +|+||+.+++.+.. -++++. ++++..... .+...+.+++++...+|+|+.+.|.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence 4899999 69999999999875 578875 466432111 1223346788886679999998853
No 275
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.02 E-value=0.01 Score=58.99 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=47.6
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCC-------CCCCCHHHH-hhcCCEEEEeccCCcc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTY-------PFYPDVCEL-AANSDVLIICCALTDQ 222 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~-------~~~~~l~el-l~~aDvV~l~~P~t~~ 222 (330)
+++.|+|+|.+|+.+|+.|...|++|.++++++... .+. .....++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 479999999999999999999999999998865421 111 111234555 7889999999876544
No 276
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.02 E-value=0.12 Score=49.01 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=62.5
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEec-
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIICC- 217 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~~- 217 (330)
+.|.+|+++|= +++-++++..+..||++|.+..+..-.. .+ +....++++.++++|+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 68999999995 7899999999999999998876643211 01 123468899999999998742
Q ss_pred -cCCc----------cccccccHHHHhcCCCCcEEEEcC
Q 020160 218 -ALTD----------QTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 218 -P~t~----------~t~~li~~~~l~~mk~gailIN~~ 245 (330)
.... .....++++.++.+|+++++.-+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 0000 012356677777777777776653
No 277
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.00 E-value=0.02 Score=54.58 Aligned_cols=108 Identities=20% Similarity=0.294 Sum_probs=65.0
Q ss_pred CceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC----------CC----C-C-CCCHHHHhhcCCEEEEeccC
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV----------TY----P-F-YPDVCELAANSDVLIICCAL 219 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~----------~~----~-~-~~~l~ell~~aDvV~l~~P~ 219 (330)
..||+|||.|.+|..+|..+...|. ++..+|...+... .+ . . ..+.+ .+++||+|+++.-.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCC
Confidence 3599999999999999999876665 6888887664311 00 1 1 13444 48999999996432
Q ss_pred --Cc-ccc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCceEEE
Q 020160 220 --TD-QTH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDEKE--MVGC--LLRGEIGGAG 268 (330)
Q Consensus 220 --t~-~t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~~a--L~~a--L~~g~i~ga~ 268 (330)
.+ .+| .++ | .+.+....|.+++|+++ ..+|.-+ +.+. +...++.|.+
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEecC
Confidence 21 233 111 1 12344457889999997 4444332 2222 3344555553
No 278
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.98 E-value=0.011 Score=55.94 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=41.7
Q ss_pred EEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEecc
Q 020160 161 VGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 161 vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~P 218 (330)
|+|||.|.+|..+|..+...|. +|+.+|++++... .. ....+. +.++.||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999886665 9999998764311 00 012344 45899999999763
No 279
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.97 E-value=0.016 Score=56.88 Aligned_cols=95 Identities=18% Similarity=0.272 Sum_probs=62.6
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhC-CCEEEEECCCCCCCCC----C--------CCCCCHHH-HhhcCCEEEEeccCC
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAF-GCCVSYNSRNKKPSVT----Y--------PFYPDVCE-LAANSDVLIICCALT 220 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~----~--------~~~~~l~e-ll~~aDvV~l~~P~t 220 (330)
...++|+|+|. |.+|+.+.+.|... +++|..+.+....... . ....+++. .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 45669999996 99999999999877 6788766543222110 0 00112222 258899999999864
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~ 256 (330)
...+....|+.|..+|+.|..-..+.++.+
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y 145 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEY 145 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCcccc
Confidence 234455556678999999876666555433
No 280
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.97 E-value=0.015 Score=57.86 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=44.5
Q ss_pred ceEEEEecChHHHHHHH---HH---HhCCCEEEEECCCCCCCC-----------------CCCCCCCHHHHhhcCCEEEE
Q 020160 159 KRVGIVGLGSIGSEVAK---RL---EAFGCCVSYNSRNKKPSV-----------------TYPFYPDVCELAANSDVLII 215 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~---~l---~~~G~~V~~~~~~~~~~~-----------------~~~~~~~l~ell~~aDvV~l 215 (330)
.+|+|||.|.+|.+.+- .+ ...|.+|..||+++.... ......++.+.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998555 22 334679999998764311 11124578899999999999
Q ss_pred eccC
Q 020160 216 CCAL 219 (330)
Q Consensus 216 ~~P~ 219 (330)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9984
No 281
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.96 E-value=0.024 Score=47.49 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=50.9
Q ss_pred EEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcE
Q 020160 161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240 (330)
Q Consensus 161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai 240 (330)
+-|+|.|.+|+++++.++.+|++|+++|++++.. ..++-+. +.+. ..+ .+.+ .+.++.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~-------------~~~~~~~-~~~~----~~~--~~~~-~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERF-------------PEADEVI-CIPP----DDI--LEDL-EIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH----HHH--HHHC--S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcccc-------------CCCCccE-ecCh----HHH--Hhcc-CCCCCeE
Confidence 4689999999999999999999999998875321 1233221 2221 111 0112 3566666
Q ss_pred EEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGL 269 (330)
Q Consensus 241 lIN~~rg~~vd~~aL~~aL~~g~i~ga~l 269 (330)
+| +.++.-.|.+.|..+|++ .....|+
T Consensus 60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 60 VV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp EE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred EE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 66 888999999999998887 4443443
No 282
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.89 E-value=0.013 Score=55.59 Aligned_cols=61 Identities=26% Similarity=0.282 Sum_probs=45.8
Q ss_pred ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCCC-------CC--------CCCCHHHHhhcCCEEEEeccCC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSVT-------YP--------FYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~~-------~~--------~~~~l~ell~~aDvV~l~~P~t 220 (330)
++|+|||.|.+|..+|..+...| .+|..+|++.....+ .. ...+. +.++.||+|+++++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 47999999999999999999888 589999987643211 10 01233 5689999999998864
No 283
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.85 E-value=0.012 Score=46.91 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhCCCEEEEECCCCCCCC--------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160 168 SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239 (330)
Q Consensus 168 ~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga 239 (330)
+-+..+++.|+..|++|.+||+...... +.....++++.++.+|+|+++++.. +.+.+--.+....|+++.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPP 95 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSE
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCC
Confidence 3457899999999999999999765321 2334568899999999999998754 444443345667788899
Q ss_pred EEEEc
Q 020160 240 VIINV 244 (330)
Q Consensus 240 ilIN~ 244 (330)
++|++
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99996
No 284
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.83 E-value=0.011 Score=53.12 Aligned_cols=89 Identities=26% Similarity=0.320 Sum_probs=61.6
Q ss_pred CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------C--C-CCCCCHHHHhhcCCEEEEeccC
Q 020160 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------T--Y-PFYPDVCELAANSDVLIICCAL 219 (330)
Q Consensus 150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~--~-~~~~~l~ell~~aDvV~l~~P~ 219 (330)
+|...++.||++.|||-|.+|..=++.+...|.+|+++++...++. . . ...... +.+..+++|+.+++.
T Consensus 4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~-~~~~~~~lviaAt~d 82 (210)
T COG1648 4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDA-EDLDDAFLVIAATDD 82 (210)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccCh-hhhcCceEEEEeCCC
Confidence 3455679999999999999999999999999999999988763211 1 0 011122 233448888877654
Q ss_pred CccccccccHHHHhcCCCCcEEEEc
Q 020160 220 TDQTHHLINKQVLLALGKKGVIINV 244 (330)
Q Consensus 220 t~~t~~li~~~~l~~mk~gailIN~ 244 (330)
.+ +|+..+..+++-.++||+
T Consensus 83 ~~-----ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 83 EE-----LNERIAKAARERRILVNV 102 (210)
T ss_pred HH-----HHHHHHHHHHHhCCceec
Confidence 32 455566666666677776
No 285
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.80 E-value=0.022 Score=55.00 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=55.4
Q ss_pred ceEEEEec-ChHHHHHHHHHHhC-CCEEEE-ECCCCCCC-C----C-CC-----CCCCHHH-HhhcCCEEEEeccCCccc
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAF-GCCVSY-NSRNKKPS-V----T-YP-----FYPDVCE-LAANSDVLIICCALTDQT 223 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~~-~~~~~~~~-~----~-~~-----~~~~l~e-ll~~aDvV~l~~P~t~~t 223 (330)
++|+|+|. |.+|+.+++.+... ++++.+ .++..... . + .. .+.++++ ...++|+|++|+|.....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~ 82 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM 82 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence 68999997 99999999999876 677654 55332211 0 0 11 1223333 457899999999975332
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020160 224 HHLINKQVLLALGKKGVIINVGRGAIIDE 252 (330)
Q Consensus 224 ~~li~~~~l~~mk~gailIN~~rg~~vd~ 252 (330)
+ + .....+.|..+|+.|-.--.+.
T Consensus 83 ~-~----v~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 83 D-L----APQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred H-H----HHHHHhCCCEEEECCcccCCCC
Confidence 2 2 1122356899999985444433
No 286
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.78 E-value=0.048 Score=50.52 Aligned_cols=97 Identities=22% Similarity=0.207 Sum_probs=64.7
Q ss_pred CccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC-----------CCCCCCCCCHHHHhhcCCEEEEeccC
Q 020160 152 LGSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP-----------SVTYPFYPDVCELAANSDVLIICCAL 219 (330)
Q Consensus 152 ~~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~~l~ell~~aDvV~l~~P~ 219 (330)
.|.+|+..|++|+|+ |.||..+|+-+.+.+.+....-|.... ..+.....|++..+.+.|+++-....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~ 240 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM 240 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence 488999999999995 999999999999888876544332111 11223334566555555555444322
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCcccCHH
Q 020160 220 TDQTHHLINKQVLLALGKKGVIINVGRGAIIDEK 253 (330)
Q Consensus 220 t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~ 253 (330)
.+-..|+.+ .+|||+++|+-++..=||+.
T Consensus 241 --~~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 241 --PKGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred --CCCceechh---hccCCeEEEcCCcCcccccc
Confidence 233456664 47899999999988766654
No 287
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.76 E-value=0.022 Score=55.68 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=32.9
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..+.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999999998 67777765
No 288
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.74 E-value=0.12 Score=48.62 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=75.3
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCC--CCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccc----------
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN--KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHH---------- 225 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~---------- 225 (330)
|++++|||--.=-..+++.|...|++|..+.-. .....+.....+.++.++++|+|++-+|.+.....
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~ 80 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV 80 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence 689999998888889999999999998766443 12122444445566679999999999997665321
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 020160 226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFE 273 (330)
Q Consensus 226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~ 273 (330)
-++++.++.|+++++ +-+|. +..++-++.++..|. ..|.++
T Consensus 81 ~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 81 VLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred cccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCe--EEEEEe
Confidence 246889999998665 44443 444555577777774 454433
No 289
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.73 E-value=0.024 Score=53.26 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=60.0
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---------C-CCCCCCHHHH--hhcCCEEEEeccCCc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---------T-YPFYPDVCEL--AANSDVLIICCALTD 221 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---------~-~~~~~~l~el--l~~aDvV~l~~P~t~ 221 (330)
...|+++.|+|.|..+++++..|+..|. +|++++|+.++.. + ........++ +.++|+|++++|..-
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 4579999999999999999999999996 7999999875421 1 0011122222 226899999988654
Q ss_pred cccc---cccHHHHhcCCCCcEEEEcCCCc
Q 020160 222 QTHH---LINKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 222 ~t~~---li~~~~l~~mk~gailIN~~rg~ 248 (330)
.-.. +++ ...++++.++.++--..
T Consensus 203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P 229 (283)
T COG0169 203 AGPEGDSPVP---AELLPKGAIVYDVVYNP 229 (283)
T ss_pred CCCCCCCCCc---HHhcCcCCEEEEeccCC
Confidence 3321 222 34456666766664433
No 290
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.65 E-value=0.044 Score=49.28 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=32.4
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999999998 47777765
No 291
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.63 E-value=0.0075 Score=48.21 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=52.0
Q ss_pred EEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC----CCCC---HHH-HhhcCCEEEEeccCCccccccc
Q 020160 161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP----FYPD---VCE-LAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~e-ll~~aDvV~l~~P~t~~t~~li 227 (330)
+-|+|+|.+|+.+++.|+..+.+|++.++.+... .+.. -..+ +.+ -+.++|.|+++.+....+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~- 79 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI- 79 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH-
Confidence 5699999999999999999777999988876431 1111 0122 333 257899999988755444333
Q ss_pred cHHHHhcCCCCcEEE
Q 020160 228 NKQVLLALGKKGVII 242 (330)
Q Consensus 228 ~~~~l~~mk~gailI 242 (330)
...++.+.+...++
T Consensus 80 -~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 80 -ALLARELNPDIRII 93 (116)
T ss_dssp -HHHHHHHTTTSEEE
T ss_pred -HHHHHHHCCCCeEE
Confidence 45566666655555
No 292
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.63 E-value=0.093 Score=49.79 Aligned_cols=89 Identities=21% Similarity=0.160 Sum_probs=62.3
Q ss_pred cCCceEEEEecC---hHHHHHHHHHHhCCCEEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccCC
Q 020160 156 LGGKRVGIVGLG---SIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 156 l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~t 220 (330)
+.|.+|+++|-| ++.++++..+..+|++|.+..+..-... +. ....++++.++.+|+|..-- ..
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~ 226 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ 226 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence 789999999985 9999999999999999988776542111 21 23578999999999987632 11
Q ss_pred cc------------ccccccHHHHhcCCCCcEEEEcC
Q 020160 221 DQ------------THHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 221 ~~------------t~~li~~~~l~~mk~gailIN~~ 245 (330)
.+ ...-++.+.++.++++++|.-+.
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 00 02234566777777777776553
No 293
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.62 E-value=0.026 Score=54.40 Aligned_cols=37 Identities=35% Similarity=0.466 Sum_probs=33.3
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999999998 78888764
No 294
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=95.62 E-value=0.041 Score=52.49 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=63.3
Q ss_pred cCCceEEEEecChHHHHHHHHHHh-------CCCEEEEECCCCC--C------------C------C------CCCCCCC
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEA-------FGCCVSYNSRNKK--P------------S------V------TYPFYPD 202 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~-------~G~~V~~~~~~~~--~------------~------~------~~~~~~~ 202 (330)
-.-++|+|||.|+.|+++|+.+.. |..+|.-|-+... . . + ......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 345799999999999999998852 3345544322111 0 0 0 1122468
Q ss_pred HHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160 203 VCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 203 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~ 248 (330)
+.+.+.+||+++..+|.+- +..+ -++...+.|+++..|....|=
T Consensus 99 l~ea~~dADilvf~vPhQf-~~~i-c~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQF-IPRI-CEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCChhh-HHHH-HHHHhcccCCCCeEEEeecce
Confidence 9999999999999999653 3333 367888999999999987763
No 295
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.62 E-value=0.17 Score=48.21 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=83.6
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------------CCC--C--CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------------SVT--Y--PFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~~--~--~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
++|.|+|.|.||.-++-+|...|..|+.+.|.+.. ..+ . .....-.+.+..+|+|++++=.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 58999999999999999999999888887776630 011 0 11123345667999999987544 3
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc--ccccCCceEEcCCCCCCC
Q 020160 223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE--QLFALDNVVLSPHSAVFT 298 (330)
Q Consensus 223 t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~--~L~~~~nvilTPHia~~t 298 (330)
+...+ +.....+++.+.++-+--| +=.++.+...+...++- .|+..+...-..+. .......+.+.+..++..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 34333 4567778888776644333 33344566666555443 23333322111111 344567888888777665
No 296
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.61 E-value=0.23 Score=49.34 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=62.5
Q ss_pred ccCCceEEEEec---ChHHHHHHHHHHhC-CCEEEEECCCCCCC-C---------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160 155 KLGGKRVGIVGL---GSIGSEVAKRLEAF-GCCVSYNSRNKKPS-V---------T--YPFYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 155 ~l~g~~vgIiG~---G~IG~~~A~~l~~~-G~~V~~~~~~~~~~-~---------~--~~~~~~l~ell~~aDvV~l~~P 218 (330)
.+.|+||++||- +++..+++..+..+ |++|.+..+..-.. . + +....++++.++++|+|....-
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 478999999998 58999999998876 99998876643211 0 1 2235789999999999987442
Q ss_pred CCcc----------ccccccHHHHhc-CCCCcEEEEc
Q 020160 219 LTDQ----------THHLINKQVLLA-LGKKGVIINV 244 (330)
Q Consensus 219 ~t~~----------t~~li~~~~l~~-mk~gailIN~ 244 (330)
-.+. ....++++.++. .|++++|.-+
T Consensus 318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 1010 113456777777 7777777755
No 297
>PRK08223 hypothetical protein; Validated
Probab=95.58 E-value=0.045 Score=51.47 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=31.6
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|++.+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35899999999999999999999999997 56666543
No 298
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.57 E-value=0.063 Score=54.14 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=69.8
Q ss_pred ccCCceEEEEec----------ChHHHHHHHHHHhCCCEEEEECCCCCCCC---------------------------CC
Q 020160 155 KLGGKRVGIVGL----------GSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------------------------TY 197 (330)
Q Consensus 155 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------------------------~~ 197 (330)
.+.|++|+|+|+ ..-...+++.|...|.+|.+||+...... ..
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 588999999998 56788999999999999999999743211 01
Q ss_pred CCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020160 198 PFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256 (330)
Q Consensus 198 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~ 256 (330)
....++.+.+++||+|++++... +.+.+--++....|++..+++|. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-HhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 22345678999999999998754 34443223345668766688984 54 45665553
No 299
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.57 E-value=0.14 Score=49.28 Aligned_cols=91 Identities=8% Similarity=0.035 Sum_probs=60.9
Q ss_pred ccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEe
Q 020160 155 KLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIIC 216 (330)
Q Consensus 155 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~ 216 (330)
.+.|.+|++||-+ ++.++++..+..+|+++.+..+..-.. .+ +....++++.++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4789999999976 689999999999999998877643211 01 22357899999999999874
Q ss_pred ccCC-------------ccccccccHHHHhcC-CCCcEEEEcC
Q 020160 217 CALT-------------DQTHHLINKQVLLAL-GKKGVIINVG 245 (330)
Q Consensus 217 ~P~t-------------~~t~~li~~~~l~~m-k~gailIN~~ 245 (330)
.=.. .-....++++.++.. |++++|.-+.
T Consensus 233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 2100 001233456666653 5666666553
No 300
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.57 E-value=0.018 Score=57.87 Aligned_cols=91 Identities=20% Similarity=0.163 Sum_probs=61.8
Q ss_pred CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------C-CC--CCCCHHHHhhcCCEEEEeccCC
Q 020160 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------T-YP--FYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~-~~--~~~~l~ell~~aDvV~l~~P~t 220 (330)
+|+..+++|++|.|||-|.++..=++.|..+|++|+++++...+.. + .. ...-..+.+..+++|+.++...
T Consensus 4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 4555689999999999999999989999999999999987543321 1 00 0011235677888877775433
Q ss_pred ccccccccHHHHhcCCCCcEEEEcC
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~ 245 (330)
+ +|.+....++...+++|++
T Consensus 84 ~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 A-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred H-----HhHHHHHHHHHcCcEEEEC
Confidence 2 4555555566566777764
No 301
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.03 Score=55.65 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=67.3
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCCC--CCCCHHHHhhcCCEEEEeccCCcc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTYP--FYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~--~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
.+.+|++.|+|.|.+|.++|+.|...|++|+++++..... .+.. .....++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 3679999999999999999999999999999999864221 0111 112234566789999886543333
Q ss_pred cccc----------cc-HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160 223 THHL----------IN-KQVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 223 t~~l----------i~-~~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
...+ +. .+.+.. .+...+-|--+.|+---.+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 2211 11 111222 232234444456887777777777765
No 302
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.54 E-value=0.072 Score=51.41 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=63.5
Q ss_pred ceEEEEecChHHHHHHHHHHhC----------CCEEE-EECCCCC-------C---------CCC-CC------CCCCHH
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAF----------GCCVS-YNSRNKK-------P---------SVT-YP------FYPDVC 204 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~----------G~~V~-~~~~~~~-------~---------~~~-~~------~~~~l~ 204 (330)
.+|||+|+|.||+.+++.+... +++|. ++|++.. . ..+ .. ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999998754 56765 4454211 0 001 01 123778
Q ss_pred HHhh--cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 020160 205 ELAA--NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-IDEKEMVGCLLRGEI 264 (330)
Q Consensus 205 ell~--~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~-vd~~aL~~aL~~g~i 264 (330)
+++. ..|+|+.++|....+...--.-....++.|.-+|-...+.+ ...++|.++.++...
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 8874 58999999987654322111223455666766665433332 235677777766655
No 303
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.52 E-value=0.03 Score=55.96 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=66.4
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEec--cCC-c----c
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICC--ALT-D----Q 222 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~--P~t-~----~ 222 (330)
++.|++|.|+|+|..|.++|+.|+..|++|.++|...... .+......-.+-+..+|+|+..- |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 3678999999999999999999999999999999754311 12221111112356899887532 211 1 1
Q ss_pred c---cc----cccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160 223 T---HH----LINK-QVLLA-L-----GKKGVIINVGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 223 t---~~----li~~-~~l~~-m-----k~gailIN~~rg~~vd~~aL~~aL~~g 262 (330)
. +. ++++ +.+.. + +...+-|--+.|+.--..-|...|+..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 1 01 1322 22222 2 233455666779888777788888753
No 304
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.51 E-value=0.18 Score=48.45 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=61.2
Q ss_pred cCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEec
Q 020160 156 LGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIICC 217 (330)
Q Consensus 156 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~~ 217 (330)
+.|+||++||-+ ++.++++..+..+|++|.+..+..-.. .+ +....++++.++++|+|..-+
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV 232 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 689999999987 788999999999999998776543211 01 122468899999999998742
Q ss_pred cCC--c-----c-----ccccccHHHHh-cCCCCcEEEEcC
Q 020160 218 ALT--D-----Q-----THHLINKQVLL-ALGKKGVIINVG 245 (330)
Q Consensus 218 P~t--~-----~-----t~~li~~~~l~-~mk~gailIN~~ 245 (330)
=.. . + ...-++++.++ .+|+++++.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 100 0 0 12345566666 367777766553
No 305
>PRK08328 hypothetical protein; Provisional
Probab=95.50 E-value=0.039 Score=50.30 Aligned_cols=37 Identities=35% Similarity=0.493 Sum_probs=32.2
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35899999999999999999999999998 57777654
No 306
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.48 E-value=0.048 Score=51.61 Aligned_cols=29 Identities=24% Similarity=0.623 Sum_probs=25.4
Q ss_pred eEEEEecChHHHHHHHHHHhCCC-EEEEEC
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNS 188 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~ 188 (330)
+|.|||+|.+|..+|+.|...|. +++.+|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD 30 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 58999999999999999999998 566655
No 307
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.44 E-value=0.096 Score=50.62 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=68.2
Q ss_pred ceEEEEecChHHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCC-cccccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAF--GCCVS-YNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALT-DQTHHLIN 228 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t-~~t~~li~ 228 (330)
.+|||||. .+|+..++.++.. ++++. ++|++.+.. .+...+.++++++...|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 68999999 6899999888775 46765 577765432 14446789999999999999999853 332332
Q ss_pred HHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 229 KQVLLALGKKG-VIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 229 ~~~l~~mk~ga-ilIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
+-..+.|+.|. +++-=-=. .-+.++|+++.++..+.
T Consensus 81 e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~ 117 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR 117 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCE
Confidence 33444556663 34332111 34556688888777665
No 308
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.39 E-value=0.029 Score=49.88 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=32.6
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|.+++|.|+|+|.+|.++++.|...|. +++.+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45899999999999999999999999998 57777654
No 309
>PRK07411 hypothetical protein; Validated
Probab=95.38 E-value=0.041 Score=54.13 Aligned_cols=83 Identities=22% Similarity=0.178 Sum_probs=55.6
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C-----
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-------------VT-----------------Y----- 197 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-------------~~-----------------~----- 197 (330)
..|+..+|.|||+|.+|..+|+.|...|. +++.+|...-.. .+ .
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 35899999999999999999999999998 566666432110 00 0
Q ss_pred -CC--CCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCC
Q 020160 198 -PF--YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237 (330)
Q Consensus 198 -~~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ 237 (330)
.. ..+..+++.++|+|+.|+ .+.+++.+++....+.-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 00 123456788888777765 4566777777655554333
No 310
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.37 E-value=0.014 Score=57.01 Aligned_cols=60 Identities=27% Similarity=0.388 Sum_probs=42.7
Q ss_pred EEEEecChHHHHHHHHHHhCC-C-EEEEECCCCCCC-------C--C-------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160 161 VGIVGLGSIGSEVAKRLEAFG-C-CVSYNSRNKKPS-------V--T-------YPFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 161 vgIiG~G~IG~~~A~~l~~~G-~-~V~~~~~~~~~~-------~--~-------~~~~~~l~ell~~aDvV~l~~P~t 220 (330)
|+|+|.|.+|+.+++.|...+ . +|++.+|+.+.. . . .....++.++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 689999999999999998766 4 899888876531 0 1 111234778999999999999754
No 311
>PLN02527 aspartate carbamoyltransferase
Probab=95.37 E-value=0.13 Score=48.94 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=60.4
Q ss_pred cCCceEEEEecC---hHHHHHHHHHHhC-CCEEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccC
Q 020160 156 LGGKRVGIVGLG---SIGSEVAKRLEAF-GCCVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCAL 219 (330)
Q Consensus 156 l~g~~vgIiG~G---~IG~~~A~~l~~~-G~~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~ 219 (330)
+.|.||++||-+ ++.++++..+..+ |++|.+..+..-... +. ....++++.+++||+|....-.
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q 228 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ 228 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence 689999999965 6899999998887 999987766432110 11 2246899999999999874311
Q ss_pred Cc------c------ccccccHHHHhcCCCCcEEEEcC
Q 020160 220 TD------Q------THHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 220 t~------~------t~~li~~~~l~~mk~gailIN~~ 245 (330)
.+ . -...++.+.++.++++++|.-+.
T Consensus 229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl 266 (306)
T PLN02527 229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL 266 (306)
T ss_pred hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence 00 0 12345566666667776666553
No 312
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.33 E-value=0.024 Score=55.32 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=32.6
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|.+++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45899999999999999999999999997 77777654
No 313
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.33 E-value=0.03 Score=57.25 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=34.9
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
..+.++++.|+|.|.+|++++..|...|++|..++|+.+
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 357899999999999999999999999999999988643
No 314
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.31 E-value=0.04 Score=55.77 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=45.0
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCC--CCCHHHHhhcCCEEEEe
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPF--YPDVCELAANSDVLIIC 216 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~--~~~l~ell~~aDvV~l~ 216 (330)
+.++++.|+|+|..|.++|+.|+..|.+|.++|....... +... .....+.+..+|+|+..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 5688999999999999999999999999999997543210 1111 11123456789999886
No 315
>PLN00106 malate dehydrogenase
Probab=95.30 E-value=0.098 Score=50.15 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=58.9
Q ss_pred CCceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCC---C------CCC-----CCCCHHHHhhcCCEEEEeccC
Q 020160 157 GGKRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPS---V------TYP-----FYPDVCELAANSDVLIICCAL 219 (330)
Q Consensus 157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~---~------~~~-----~~~~l~ell~~aDvV~l~~P~ 219 (330)
..+||+|+|. |.+|..+|..|...+. ++..+|...... . ... ...++.+.+++||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4579999999 9999999999985554 788888765211 0 000 123457889999999987543
Q ss_pred Ccc---ccc-cc--c----H---HHHhcCCCCcEEEEcCCCc
Q 020160 220 TDQ---THH-LI--N----K---QVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 220 t~~---t~~-li--~----~---~~l~~mk~gailIN~~rg~ 248 (330)
... ++. ++ | . +.+....|.+++++++---
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 211 221 11 1 1 2233445889999987544
No 316
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.046 Score=54.32 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=66.0
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCCC--CCHHHHhhc-CCEEEEec--cCC-
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPFY--PDVCELAAN-SDVLIICC--ALT- 220 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~ell~~-aDvV~l~~--P~t- 220 (330)
+.|+++.|+|.|.+|.++|+.|+..|++|.++|+...... +.... ....+++.. .|+|+..- |.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 6799999999999999999999999999999987542211 21111 122344554 89887754 211
Q ss_pred cc-------ccccccHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160 221 DQ-------THHLINKQ-VLLAL-GKKGVIINVGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 221 ~~-------t~~li~~~-~l~~m-k~gailIN~~rg~~vd~~aL~~aL~~g 262 (330)
+. .-.+++.. .+..+ +...+-|--+.|+---..-+...|+..
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 11 01123322 22233 333455555678877777777777653
No 317
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.29 E-value=0.39 Score=46.71 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=45.7
Q ss_pred ccCCceEEEEecC--------hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcC
Q 020160 155 KLGGKRVGIVGLG--------SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANS 210 (330)
Q Consensus 155 ~l~g~~vgIiG~G--------~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~a 210 (330)
.+.|+||+|+|.| ++.++++..+..||++|.+..+..-.. .+ .....++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 455788888999999998877653210 11 12357899999999
Q ss_pred CEEEEe
Q 020160 211 DVLIIC 216 (330)
Q Consensus 211 DvV~l~ 216 (330)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999875
No 318
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.28 E-value=0.1 Score=50.28 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=65.0
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEec
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICC 217 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~ 217 (330)
.+.|.+|++||= .++.++++..+..+|++|.++.+..-... + +....++++.++++|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 478999999996 68899999999999999988776432110 1 223578999999999998832
Q ss_pred -----cCCc---c------ccccccHHHHhcCCCCcEEEEcC
Q 020160 218 -----ALTD---Q------THHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 218 -----P~t~---~------t~~li~~~~l~~mk~gailIN~~ 245 (330)
.... + -...++++.++.+|++++|.-+.
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL 272 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL 272 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence 1100 0 12456788888888888887764
No 319
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=95.24 E-value=0.036 Score=52.23 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=68.6
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C--------------CCCCCC----------CH
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V--------------TYPFYP----------DV 203 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~--------------~~~~~~----------~l 203 (330)
+-...+.++-++|+|.+|-..+...+..|+-|..++-++... . ++.... -+
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 445778889999999999999999999999998877554320 0 111111 13
Q ss_pred HHHhhcCCEEEEe--ccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160 204 CELAANSDVLIIC--CALTDQTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 204 ~ell~~aDvV~l~--~P~t~~t~~li~~~~l~~mk~gailIN~~ 245 (330)
.+..++.|+|+.. .|..+.-+ ++.++..+.||||+++|+.+
T Consensus 239 a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEeh
Confidence 4567899999875 56666544 88999999999999999974
No 320
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.23 E-value=0.18 Score=48.57 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=62.2
Q ss_pred cCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEec
Q 020160 156 LGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIICC 217 (330)
Q Consensus 156 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~~ 217 (330)
+.|+||++||=+ ++.++.+..+..+|++|.+..+..-.. .+ +....++++.++++|+|..-.
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 679999999975 889999999999999998877642111 11 223578999999999998742
Q ss_pred cCC--c------c-----ccccccHHHHhcCC-CCcEEEEcC
Q 020160 218 ALT--D------Q-----THHLINKQVLLALG-KKGVIINVG 245 (330)
Q Consensus 218 P~t--~------~-----t~~li~~~~l~~mk-~gailIN~~ 245 (330)
=.. . + -...++++.++.++ |+++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 100 0 0 12345677777775 477777664
No 321
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.23 E-value=0.018 Score=59.82 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=60.3
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC----CCC---HHH-HhhcCCEEEEeccCCcccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF----YPD---VCE-LAANSDVLIICCALTDQTH 224 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~e-ll~~aDvV~l~~P~t~~t~ 224 (330)
..++-|+|+|++|+.+++.|...|.++++.|.+++.. .+... ..+ +++ -+++||.++++.+..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 4679999999999999999999999999999876531 12111 112 222 2578999999998776665
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 020160 225 HLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~r 246 (330)
.+ ....+++.|...+|-.+|
T Consensus 480 ~i--~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KI--VELCQQHFPHLHILARAR 499 (601)
T ss_pred HH--HHHHHHHCCCCeEEEEeC
Confidence 54 344555666666554433
No 322
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.22 E-value=0.042 Score=51.79 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=33.5
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK 192 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~ 192 (330)
++.|+++.|+|.|..+++++..|...|. +|.+++|+..
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 3678999999999999999999988897 7999999853
No 323
>PRK11579 putative oxidoreductase; Provisional
Probab=95.21 E-value=0.046 Score=52.58 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=45.3
Q ss_pred ceEEEEecChHHHH-HHHHHHh-CCCEEE-EECCCCCCC----CCCCCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160 159 KRVGIVGLGSIGSE-VAKRLEA-FGCCVS-YNSRNKKPS----VTYPFYPDVCELAA--NSDVLIICCALTDQ 222 (330)
Q Consensus 159 ~~vgIiG~G~IG~~-~A~~l~~-~G~~V~-~~~~~~~~~----~~~~~~~~l~ell~--~aDvV~l~~P~t~~ 222 (330)
.++||||+|.||+. .+..++. -++++. ++++++... .....+.+++++++ ..|+|++++|...+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 48999999999985 5665554 368875 567664321 12334679999996 47999999986543
No 324
>PRK05086 malate dehydrogenase; Provisional
Probab=95.20 E-value=0.11 Score=49.62 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=55.5
Q ss_pred ceEEEEec-ChHHHHHHHHHH---hCCCEEEEECCCCCCC---C---CCC--C------CCCHHHHhhcCCEEEEeccCC
Q 020160 159 KRVGIVGL-GSIGSEVAKRLE---AFGCCVSYNSRNKKPS---V---TYP--F------YPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~---~~G~~V~~~~~~~~~~---~---~~~--~------~~~l~ell~~aDvV~l~~P~t 220 (330)
++++|||. |.||+++|..+. ..+..+..+++.+... . ... . ..++.+.++++|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998774 3455788888764321 0 101 0 235567889999999986532
Q ss_pred ccccc-----ccc------HHH---HhcCCCCcEEEEcCCC
Q 020160 221 DQTHH-----LIN------KQV---LLALGKKGVIINVGRG 247 (330)
Q Consensus 221 ~~t~~-----li~------~~~---l~~mk~gailIN~~rg 247 (330)
...+ ++. .+. +..-.+.+++++++-.
T Consensus 81 -~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 81 -RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 2111 111 223 3334577899998653
No 325
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.17 E-value=0.76 Score=43.09 Aligned_cols=180 Identities=17% Similarity=0.128 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 020160 117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAF----GC-------CVS 185 (330)
Q Consensus 117 vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~ 185 (330)
+|=.+++-+|+.+|-. |+.|...++.|+|.|.-|-.+|+.+... |+ +++
T Consensus 4 Ta~V~lAgllnAlk~~--------------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~ 63 (279)
T cd05312 4 TAAVALAGLLAALRIT--------------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW 63 (279)
T ss_pred HHHHHHHHHHHHHHHh--------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence 4445677777666642 4568899999999999999999999876 77 677
Q ss_pred EECCCCC-----CCC---------CCC--CCCCHHHHhh--cCCEEEEeccCCccccccccHHHHhcCC---CCcEEEEc
Q 020160 186 YNSRNKK-----PSV---------TYP--FYPDVCELAA--NSDVLIICCALTDQTHHLINKQVLLALG---KKGVIINV 244 (330)
Q Consensus 186 ~~~~~~~-----~~~---------~~~--~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l~~mk---~gailIN~ 244 (330)
.+|+..- ... ... ...+|.|+++ ++|+++=+- ..-++|+++.++.|. +.+++.=.
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL 139 (279)
T cd05312 64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFAL 139 (279)
T ss_pred EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 7776531 100 001 2358999999 889887632 234789999999998 88999999
Q ss_pred CCCcccCHHHHHHHHH--cCC-ceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCH-----HHHHHHHHHHHHHHHH
Q 020160 245 GRGAIIDEKEMVGCLL--RGE-IGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTP-----ESFKDVCELAVANLEA 315 (330)
Q Consensus 245 ~rg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~-----~~~~~~~~~~~~nl~~ 315 (330)
|.-.---|-.-.++.+ +|+ |.+.|.-.-..+..-. ...=+..|+++=|=++-..- .--+.|...+++-|-+
T Consensus 140 SNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~ 219 (279)
T cd05312 140 SNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALAS 219 (279)
T ss_pred CCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHH
Confidence 9876633333333333 354 6544431111111000 11335668888887764321 1234566666666666
Q ss_pred HHcCC
Q 020160 316 FFSNK 320 (330)
Q Consensus 316 ~~~g~ 320 (330)
+..-+
T Consensus 220 ~~~~~ 224 (279)
T cd05312 220 LVTDE 224 (279)
T ss_pred hCCcc
Confidence 55433
No 326
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.16 E-value=0.007 Score=50.89 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=57.3
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCC--CEEEEECCCCCCCC---------------CCCCCCCHHHHhhcCCEEEEec--c
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFG--CCVSYNSRNKKPSV---------------TYPFYPDVCELAANSDVLIICC--A 218 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~---------------~~~~~~~l~ell~~aDvV~l~~--P 218 (330)
++|+|||. |.+|+.+|..|...+ -++..+|+...... .........+.+++||+|+++. |
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 48999999 999999999987544 48988988743211 0111235567889999999987 3
Q ss_pred CCc-ccc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 020160 219 LTD-QTH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDE 252 (330)
Q Consensus 219 ~t~-~t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~ 252 (330)
..+ ++| .++ | .+.+....|.++++.++ ..+|.
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd~ 123 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVDV 123 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHHH
Confidence 332 112 111 1 11233345778888874 34553
No 327
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.15 E-value=0.051 Score=52.73 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=32.0
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999999998 67666654
No 328
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.15 E-value=0.055 Score=55.89 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=48.3
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----C--C-CCCCC---HHHHhhcCCEEEEecc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----T--Y-PFYPD---VCELAANSDVLIICCA 218 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~--~-~~~~~---l~ell~~aDvV~l~~P 218 (330)
....|+|||||-|..|+.+++.++.+|++|+.++..+.... . . ..+.+ +.++++.+|+|+....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 47889999999999999999999999999999988764221 0 0 11233 5566788999876543
No 329
>PLN02342 ornithine carbamoyltransferase
Probab=95.12 E-value=0.42 Score=46.31 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=62.5
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC----------C---CCCCCCHHHHhhcCCEEEEec---c
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------T---YPFYPDVCELAANSDVLIICC---A 218 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~---~~~~~~l~ell~~aDvV~l~~---P 218 (330)
+.|+||++||= .++.++++..+..+|++|.+..+..-... + +....++++.++++|+|..-. -
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~ 271 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM 271 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence 78999999995 56888888899999999987766432110 1 223578899999999998752 0
Q ss_pred CC-cc--------ccccccHHHHhcCCCCcEEEEcC
Q 020160 219 LT-DQ--------THHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 219 ~t-~~--------t~~li~~~~l~~mk~gailIN~~ 245 (330)
.. +. ....++++.++.+|++++|.-+.
T Consensus 272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 11 10 12456777777777777776663
No 330
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.09 E-value=0.049 Score=52.50 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=42.6
Q ss_pred eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC---CCCCC---HHHHhhcCCEEEE
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY---PFYPD---VCELAANSDVLII 215 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~---~~~~~---l~ell~~aDvV~l 215 (330)
||||||-|..|+.+++.++.+|++|++++.++.... .. ..+.+ +.++++.||+|+.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 699999999999999999999999999988754321 00 11223 6678888998754
No 331
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.05 E-value=0.022 Score=58.47 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=54.6
Q ss_pred ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC----CCC---HHH-HhhcCCEEEEeccCCccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF----YPD---VCE-LAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~e-ll~~aDvV~l~~P~t~~t~~ 225 (330)
.++-|+|+|++|+.+|+.|+..|.+|++.|.+++.. .+... ..+ +++ -++++|.++++++.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 578899999999999999999999999998876531 11110 112 222 25688989888887666554
Q ss_pred cccHHHHhcCCCCcEEE
Q 020160 226 LINKQVLLALGKKGVII 242 (330)
Q Consensus 226 li~~~~l~~mk~gailI 242 (330)
++- ....+.+...+|
T Consensus 498 iv~--~~~~~~~~~~ii 512 (558)
T PRK10669 498 IVA--SAREKRPDIEII 512 (558)
T ss_pred HHH--HHHHHCCCCeEE
Confidence 432 223344555555
No 332
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.03 E-value=0.024 Score=48.70 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=47.4
Q ss_pred EEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC---C-------CCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160 161 VGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV---T-------YPFYPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 161 vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---~-------~~~~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
|.|+|. |.+|+.+++.|...|++|++..|++.+.. + .....++.+.++.+|.|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 578995 99999999999999999999988876421 1 11123456778899999999975444
No 333
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.01 E-value=0.59 Score=43.23 Aligned_cols=176 Identities=16% Similarity=0.110 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC-----------EEE
Q 020160 117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-----------CVS 185 (330)
Q Consensus 117 vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-----------~V~ 185 (330)
+|=.+++-+|+.+|-. |+++...++.|+|.|.-|-.+|+.+...+. +++
T Consensus 4 TaaV~lAgllnAlk~~--------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~ 63 (254)
T cd00762 4 TASVAVAGLLAALKVT--------------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW 63 (254)
T ss_pred hHHHHHHHHHHHHHHh--------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence 3445677777666631 456888999999999999999999987665 577
Q ss_pred EECCCCC-----CCC-----C---C----CCCCCHHHHhh--cCCEEEEeccCCccccccccHHHHhcCC---CCcEEEE
Q 020160 186 YNSRNKK-----PSV-----T---Y----PFYPDVCELAA--NSDVLIICCALTDQTHHLINKQVLLALG---KKGVIIN 243 (330)
Q Consensus 186 ~~~~~~~-----~~~-----~---~----~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l~~mk---~gailIN 243 (330)
.+|+..- ... . + ....+|.|+++ +.|+++=.. ...++|.++.++.|. +.+++.=
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 7776421 000 0 1 12358999999 999887532 235789999999998 8899999
Q ss_pred cCCCcccCH---HHHHHHHHcCCceEEEEecCCCCCCCCc---ccccCCceEEcCCCCCCCHH-----HHHHHHHHHHHH
Q 020160 244 VGRGAIIDE---KEMVGCLLRGEIGGAGLDVFENEPDVPE---QLFALDNVVLSPHSAVFTPE-----SFKDVCELAVAN 312 (330)
Q Consensus 244 ~~rg~~vd~---~aL~~aL~~g~i~ga~lDV~~~EP~~~~---~L~~~~nvilTPHia~~t~~-----~~~~~~~~~~~n 312 (330)
.|....--| ++.+++=+...|.+.|.-.+..+- +. ..-+..|+.+=|=++-..-. --+.|...+++-
T Consensus 140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~--~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~a 217 (254)
T cd00762 140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL--NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEA 217 (254)
T ss_pred CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc--CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHH
Confidence 988776333 333333323345444432222211 11 13366789998977643221 124555555665
Q ss_pred HHHHHc
Q 020160 313 LEAFFS 318 (330)
Q Consensus 313 l~~~~~ 318 (330)
|-++..
T Consensus 218 LA~~v~ 223 (254)
T cd00762 218 IASSVT 223 (254)
T ss_pred HHhhCC
Confidence 655543
No 334
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.01 E-value=0.051 Score=54.94 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=64.5
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC--CCCHHHHhhcCCEEEEeccCCcccc----
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF--YPDVCELAANSDVLIICCALTDQTH---- 224 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~--~~~l~ell~~aDvV~l~~P~t~~t~---- 224 (330)
..|+++.|+|+|.+|.+.++.|+..|++|+++|..+... .+... .....+.+..+|+|+.+-...+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 468999999999999999999999999999999653211 12211 1123456778998887642222211
Q ss_pred ------ccccHHHHh--cC------CC-CcEEEEcCCCcccCHHHHHHHHHc
Q 020160 225 ------HLINKQVLL--AL------GK-KGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 225 ------~li~~~~l~--~m------k~-gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
.++++-.+. .+ ++ ..+-|--+-|+.--..-+...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 122222221 11 12 234444456877777767777765
No 335
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.96 E-value=0.19 Score=48.23 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=60.1
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CC--------CCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKP--SV-------TY--------PFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~ell~~aDvV 213 (330)
++|+|||. |.+|..+|..+...|. ++..+|..... .. .. ....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999999876555 68888874332 11 00 0123456889999999
Q ss_pred EEeccCC--c-cccc-cc--c----H---HHHhcCC-CCcEEEEcCCCcccCHHHHHH
Q 020160 214 IICCALT--D-QTHH-LI--N----K---QVLLALG-KKGVIINVGRGAIIDEKEMVG 257 (330)
Q Consensus 214 ~l~~P~t--~-~t~~-li--~----~---~~l~~mk-~gailIN~~rg~~vd~~aL~~ 257 (330)
+++.-.. + .||. ++ | + ..+..-. |.+++|+++ ..+|.-+-+-
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~ 138 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIA 138 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHH
Confidence 9986432 1 1221 11 1 1 1222334 588999986 6666555443
No 336
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.94 E-value=0.043 Score=60.04 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=45.0
Q ss_pred CCceEEEEecChHHHHHHHHHHhC-CCE-------------EEEECCCCCCCC-------CC---CC-CCCHHHH---hh
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAF-GCC-------------VSYNSRNKKPSV-------TY---PF-YPDVCEL---AA 208 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~-G~~-------------V~~~~~~~~~~~-------~~---~~-~~~l~el---l~ 208 (330)
+.++|+|||.|.||+..|+.|... +.+ |.+.|++..... +. .. +.+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999753 233 778887653311 11 11 3344444 46
Q ss_pred cCCEEEEeccCC
Q 020160 209 NSDVLIICCALT 220 (330)
Q Consensus 209 ~aDvV~l~~P~t 220 (330)
++|+|++++|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999974
No 337
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.89 E-value=0.084 Score=49.99 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=55.3
Q ss_pred EEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCC----------CC----CC--CCCHHHHhhcCCEEEEeccCCcc
Q 020160 161 VGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSV----------TY----PF--YPDVCELAANSDVLIICCALTDQ 222 (330)
Q Consensus 161 vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~----------~~----~~--~~~l~ell~~aDvV~l~~P~t~~ 222 (330)
|+|||.|.+|..+|-.+...| .++..+|....... .. .. ..+ .+.+++||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998888 47999998764311 00 00 123 4689999999998753221
Q ss_pred ---ccc--------ccc--HHHHhcCCCCcEEEEcC
Q 020160 223 ---THH--------LIN--KQVLLALGKKGVIINVG 245 (330)
Q Consensus 223 ---t~~--------li~--~~~l~~mk~gailIN~~ 245 (330)
+|. ++. ...+....|.+++|+++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 111 110 12233345889999987
No 338
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.86 E-value=0.068 Score=52.57 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=31.9
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|.+.+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 35889999999999999999999998887 67777643
No 339
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.83 E-value=0.9 Score=48.33 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=102.9
Q ss_pred CcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC
Q 020160 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC 182 (330)
Q Consensus 103 gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~ 182 (330)
+|+|.|. +.+. +|=.+++-+++.+|-. |+.+...++.|.|.|.-|-.+|+.+...|.
T Consensus 153 ~ip~f~D-D~~G--Ta~v~lA~l~na~~~~--------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 209 (752)
T PRK07232 153 DIPVFHD-DQHG--TAIISAAALLNALELV--------------------GKKIEDVKIVVSGAGAAAIACLNLLVALGA 209 (752)
T ss_pred CCCeecc-ccch--HHHHHHHHHHHHHHHh--------------------CCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence 5788876 3333 4445677777666531 456889999999999999999999999998
Q ss_pred ---EEEEECCCCC----C-C--C-------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160 183 ---CVSYNSRNKK----P-S--V-------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 183 ---~V~~~~~~~~----~-~--~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~ 245 (330)
+++.+|+..- . . . ......+|.|+++.+|+++=. . +.+.++++.++.|.+.+++.=.|
T Consensus 210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals 284 (752)
T PRK07232 210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALA 284 (752)
T ss_pred CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecC
Confidence 6887776531 1 0 0 012235899999999987653 2 25799999999999999999998
Q ss_pred CCcccCHHHHHHHHHc--CCceEEEEecCCCCCCCCcccccCCceEEcCCCC
Q 020160 246 RGAIIDEKEMVGCLLR--GEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295 (330)
Q Consensus 246 rg~~vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia 295 (330)
.... |-.-.++.+. |.|.+.|- ...| =+..|+++=|=++
T Consensus 285 NP~~--E~~p~~a~~~~~~~i~atGr---s~~p------nQ~NN~~~FPgi~ 325 (752)
T PRK07232 285 NPDP--EITPEEAKAVRPDAIIATGR---SDYP------NQVNNVLCFPYIF 325 (752)
T ss_pred CCCc--cCCHHHHHHhcCCEEEEECC---cCCC------Ccccceeecchhh
Confidence 8774 2222233333 34554441 1122 1345777777654
No 340
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.81 E-value=0.021 Score=50.08 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=45.3
Q ss_pred ceEEEEecChHHHHHHHH--HHhCCCEEE-EECCCCCCC----CCC--CCCCCHHHHhh--cCCEEEEeccCCc
Q 020160 159 KRVGIVGLGSIGSEVAKR--LEAFGCCVS-YNSRNKKPS----VTY--PFYPDVCELAA--NSDVLIICCALTD 221 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~--l~~~G~~V~-~~~~~~~~~----~~~--~~~~~l~ell~--~aDvV~l~~P~t~ 221 (330)
-++.|||.|++|++++.. .+..||++. ++|..++.. .+. ...++++..++ +.|+.++|+|...
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 369999999999999985 457899875 788766531 111 22456777777 6789999999653
No 341
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.81 E-value=0.15 Score=50.84 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=62.8
Q ss_pred ccccCCceEEEEec----------ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCC--CCCHHH-HhhcCCEEEEeccC
Q 020160 153 GSKLGGKRVGIVGL----------GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF--YPDVCE-LAANSDVLIICCAL 219 (330)
Q Consensus 153 ~~~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~--~~~l~e-ll~~aDvV~l~~P~ 219 (330)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+||+.......... ...+++ .+..||.|++++..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h 388 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH 388 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence 45689999999999 567889999999999999999997432110000 111222 46789999998865
Q ss_pred CccccccccHHHH-hcCCCCcEEEEcCCCcc
Q 020160 220 TDQTHHLINKQVL-LALGKKGVIINVGRGAI 249 (330)
Q Consensus 220 t~~t~~li~~~~l-~~mk~gailIN~~rg~~ 249 (330)
. +.+. ++.+.+ ..|+...++|+ +|+-+
T Consensus 389 ~-~f~~-~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 389 Q-QFKQ-MGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred H-Hhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence 4 3443 343444 34664568888 56555
No 342
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=94.80 E-value=0.23 Score=46.87 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=69.1
Q ss_pred CceEEEEec-ChHHHHHHHHHHhCCCEE-EEECCC--CCCCCCCCCCCCHHHHhhc--CCEEEEeccCCccccccccHHH
Q 020160 158 GKRVGIVGL-GSIGSEVAKRLEAFGCCV-SYNSRN--KKPSVTYPFYPDVCELAAN--SDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V-~~~~~~--~~~~~~~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~ 231 (330)
..+|.|.|. |.+|+.+.+.|..+|+++ ..+++. .....+...+.++.|+-.. -|+.++++|.. .+...+ ++.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~e~ 85 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-LEA 85 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-HHH
Confidence 567899996 889999999999999863 345554 3333466778899999987 89999999954 333332 223
Q ss_pred HhcCCC-CcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 232 LLALGK-KGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 232 l~~mk~-gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
.+ ..- .++++.-+- ..-|++.|.+..+++.++
T Consensus 86 ~~-~gvk~avI~s~Gf-~~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 86 ID-AGIDLIVCITEGI-PVLDMLEVKAYLERKKTR 118 (291)
T ss_pred HH-CCCCEEEEECCCC-CHHHHHHHHHHHHHcCCE
Confidence 32 332 334444333 343444888888887654
No 343
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.79 E-value=0.086 Score=51.44 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=61.6
Q ss_pred cCCceEEEEecC----------hHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCC
Q 020160 156 LGGKRVGIVGLG----------SIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 156 l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t 220 (330)
|.|||+||+|+- .-...++++|+..|.+|.+||+...... +..+..++++++++||.++++.. .
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 899999999984 3467899999999999999998654322 23556799999999999999764 3
Q ss_pred ccccccccHHHHhcCCCCcEEEE
Q 020160 221 DQTHHLINKQVLLALGKKGVIIN 243 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN 243 (330)
++.+.+ +-+.+ .|| +.++++
T Consensus 387 ~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hcc-CCEEEe
Confidence 455543 33333 565 456555
No 344
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.061 Score=54.08 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=65.4
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC--------CCCC--CCCHHHHhhcCCEEEEec--cCC-cc
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TYPF--YPDVCELAANSDVLIICC--ALT-DQ 222 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~~~--~~~l~ell~~aDvV~l~~--P~t-~~ 222 (330)
+.|++++|+|+|.-|.+.|+.|+..|++|+++|....... +... .....+.+.++|+|+..- |.+ |.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 4689999999999999999999999999999986432111 1000 111235567899887753 221 11
Q ss_pred c-------cccccHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160 223 T-------HHLINKQVL--LA-LG-----KKGVIINVGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 223 t-------~~li~~~~l--~~-mk-----~gailIN~~rg~~vd~~aL~~aL~~g 262 (330)
. ..++++-.+ .. ++ ...+-|--+.|+---..-+...|+..
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 1 113443332 33 32 13455555568877777777777643
No 345
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.75 E-value=0.3 Score=43.87 Aligned_cols=87 Identities=26% Similarity=0.299 Sum_probs=54.9
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CC----CC-CCCHHH-H----hhcCCEEEEeccCCc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TY----PF-YPDVCE-L----AANSDVLIICCALTD 221 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~----~~-~~~l~e-l----l~~aDvV~l~~P~t~ 221 (330)
.|.++.|.|.|.+|+.+++.++..|.+|.+.+++..... +. .. ..+..+ + -...|+++.+++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 578999999999999999999999999998877643210 10 00 011111 1 134677776654311
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCc
Q 020160 222 QTHHLINKQVLLALGKKGVIINVGRGA 248 (330)
Q Consensus 222 ~t~~li~~~~l~~mk~gailIN~~rg~ 248 (330)
.-...+..|++++.+++++...
T Consensus 214 -----~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 214 -----TLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred -----HHHHHHHhcccCCEEEEEccCC
Confidence 1134566677777777776544
No 346
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.74 E-value=0.14 Score=46.12 Aligned_cols=36 Identities=39% Similarity=0.483 Sum_probs=32.1
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
+.|+++.|.|. |.||+.+++.|...|++|++..|+.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 67899999996 9999999999999999998877754
No 347
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.73 E-value=0.043 Score=46.50 Aligned_cols=85 Identities=22% Similarity=0.176 Sum_probs=55.3
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCC---CCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY---PFYPDVCELAANSDVLIICCALTDQTHHLINKQVL 232 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l 232 (330)
..|++|++||+= +.++++++..+.++.++++++...... ......++++++||+|++.-- |=-+.-+ .+.|
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs-TlvN~Ti--~~iL 82 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS-TLVNGTI--DDIL 82 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH-HCCTTTH--HHHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee-eeecCCH--HHHH
Confidence 468999999961 237888888899999999988542211 123456789999999988532 1111112 5678
Q ss_pred hcCCCCcEEEEcCC
Q 020160 233 LALGKKGVIINVGR 246 (330)
Q Consensus 233 ~~mk~gailIN~~r 246 (330)
+..+++..++=+|-
T Consensus 83 ~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 83 ELARNAREVILYGP 96 (147)
T ss_dssp HHTTTSSEEEEESC
T ss_pred HhCccCCeEEEEec
Confidence 88887777776654
No 348
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.70 E-value=0.094 Score=51.97 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=53.4
Q ss_pred ccccCCceEEEEec----------ChHHHHHHHHHHhCC-CEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEec
Q 020160 153 GSKLGGKRVGIVGL----------GSIGSEVAKRLEAFG-CCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICC 217 (330)
Q Consensus 153 ~~~l~g~~vgIiG~----------G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~ 217 (330)
+.++.|++|+|+|+ ..-...+++.|+..| .+|.+||+...... ......++++.++.||.|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 45678999999998 557789999999996 99999999744321 1112468899999999999998
Q ss_pred cCC
Q 020160 218 ALT 220 (330)
Q Consensus 218 P~t 220 (330)
+..
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 754
No 349
>PRK04148 hypothetical protein; Provisional
Probab=94.69 E-value=0.083 Score=44.08 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=48.8
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC-----CCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP-----FYPDVCELAANSDVLIICCALTDQTHHL 226 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~-----~~~~l~ell~~aDvV~l~~P~t~~t~~l 226 (330)
+++++.+||+| -|..+|+.|...|++|++.|.++.... +.. ....-.++.+.+|+|-..-|..+--+.+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~ 94 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI 94 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH
Confidence 56899999999 999999999999999999998876311 110 1122236778888887776654433333
No 350
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.66 E-value=0.031 Score=58.26 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=57.5
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC----CCCH---HH-HhhcCCEEEEeccCCcccc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF----YPDV---CE-LAANSDVLIICCALTDQTH 224 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~l---~e-ll~~aDvV~l~~P~t~~t~ 224 (330)
..++-|+|+|++|+.+|+.|.+.|.++++.|.+++.. .+... ..+. ++ -++++|.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4689999999999999999999999999998876531 12211 1122 21 2568999999997766655
Q ss_pred ccccHHHHhcCCCCcEEEE
Q 020160 225 HLINKQVLLALGKKGVIIN 243 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN 243 (330)
.+ ....+.+.|...++-
T Consensus 480 ~i--~~~ar~~~p~~~iia 496 (621)
T PRK03562 480 QL--VELVKEHFPHLQIIA 496 (621)
T ss_pred HH--HHHHHHhCCCCeEEE
Confidence 44 344555556655443
No 351
>PRK07877 hypothetical protein; Provisional
Probab=94.64 E-value=0.1 Score=55.15 Aligned_cols=93 Identities=20% Similarity=0.302 Sum_probs=61.8
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCC------------CC-----------------CC------
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKP------------SV-----------------TY------ 197 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~------------~~-----------------~~------ 197 (330)
.|++++|+|+|+| +|+.+|..|...|. +++.+|...-. .. ..
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5899999999999 99999999998884 66665532100 00 00
Q ss_pred --CCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 020160 198 --PFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIID 251 (330)
Q Consensus 198 --~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd 251 (330)
....+++++++++|+|+-|+- +-+++.+++....++=+ .++.-.+-++.+|
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~ 235 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD 235 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence 001357788999999988774 56888888876665432 3444444334443
No 352
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.64 E-value=0.69 Score=44.57 Aligned_cols=91 Identities=7% Similarity=0.027 Sum_probs=63.3
Q ss_pred ccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEe
Q 020160 155 KLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIIC 216 (330)
Q Consensus 155 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~ 216 (330)
.+.|.+|++||=+ ++.++++..+..+|++|.+..+..-.. .+ +....++++.++++|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999975 789999999999999998877643110 01 12246899999999999874
Q ss_pred c------cCC--cc-----ccccccHHHHhcC-CCCcEEEEcC
Q 020160 217 C------ALT--DQ-----THHLINKQVLLAL-GKKGVIINVG 245 (330)
Q Consensus 217 ~------P~t--~~-----t~~li~~~~l~~m-k~gailIN~~ 245 (330)
. ... ++ -..-++.+.++.. |++++|.-+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 3 000 00 1234567777775 6788887764
No 353
>PRK12862 malic enzyme; Reviewed
Probab=94.63 E-value=1 Score=48.15 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=103.9
Q ss_pred CcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC
Q 020160 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC 182 (330)
Q Consensus 103 gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~ 182 (330)
+|+|.|. +.+. +|=.+++-+++.+|-. |+.+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 161 ~ip~f~D-D~~G--Ta~v~la~l~~a~~~~--------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 217 (763)
T PRK12862 161 KIPVFHD-DQHG--TAIIVAAALLNGLKLV--------------------GKDIEDVKLVASGAGAAALACLDLLVSLGV 217 (763)
T ss_pred CCceEec-Cccc--HHHHHHHHHHHHHHHh--------------------CCChhhcEEEEEChhHHHHHHHHHHHHcCC
Confidence 5888887 3333 4555677777666632 456889999999999999999999999998
Q ss_pred ---EEEEECCCCC-----CC--C-------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160 183 ---CVSYNSRNKK-----PS--V-------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 183 ---~V~~~~~~~~-----~~--~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~ 245 (330)
+++.+|+..- .. . ......+|.|+++.+|+++=.- +.+.++++.++.|.+.+++.=.|
T Consensus 218 ~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifals 292 (763)
T PRK12862 218 KRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALA 292 (763)
T ss_pred CcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCC
Confidence 6888875421 10 0 0012358999999999887532 25789999999999999999998
Q ss_pred CCcccCHHHHHHHHHc--CCceEEEEecCCCCCCCCcccccCCceEEcCCCCC
Q 020160 246 RGAIIDEKEMVGCLLR--GEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAV 296 (330)
Q Consensus 246 rg~~vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~ 296 (330)
.... |-.-.++.+- |.|.+.|-. ..| =+..|+++=|=++-
T Consensus 293 NP~~--E~~p~~a~~~~~~~i~atGrs---~~p------~Q~NN~~~FPgi~~ 334 (763)
T PRK12862 293 NPTP--EILPEEARAVRPDAIIATGRS---DYP------NQVNNVLCFPYIFR 334 (763)
T ss_pred CCcc--cCCHHHHHHhcCCEEEEECCc---CCC------Ccccceeeccchhh
Confidence 8764 2222223333 345544421 112 23457777776653
No 354
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.61 E-value=0.097 Score=45.54 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=27.6
Q ss_pred eEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK 191 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~ 191 (330)
+|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 487777643
No 355
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.54 E-value=0.34 Score=46.45 Aligned_cols=96 Identities=20% Similarity=0.182 Sum_probs=59.7
Q ss_pred eEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCC--CCCCC-------C--------CCCCCHHHHhhcCCEEE
Q 020160 160 RVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNK--KPSVT-------Y--------PFYPDVCELAANSDVLI 214 (330)
Q Consensus 160 ~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~--~~~~~-------~--------~~~~~l~ell~~aDvV~ 214 (330)
+|+|+|. |.+|+.+|..|...|. ++..+|+.. ....+ . ....+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999998876443 488888865 32110 0 00145678999999999
Q ss_pred EeccC--Cc-cccc-cc--c----H---HHHhcC-CCCcEEEEcCCCcccCHHHHHH
Q 020160 215 ICCAL--TD-QTHH-LI--N----K---QVLLAL-GKKGVIINVGRGAIIDEKEMVG 257 (330)
Q Consensus 215 l~~P~--t~-~t~~-li--~----~---~~l~~m-k~gailIN~~rg~~vd~~aL~~ 257 (330)
++.-. .+ +||. ++ | + ..+... +|.+++|.++ ..+|.-+.+-
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~ 136 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIA 136 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHH
Confidence 87532 22 1221 11 1 1 123334 5888888885 6666555443
No 356
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.52 E-value=0.22 Score=43.89 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=48.3
Q ss_pred ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC---CC-------CCCCCHHHHhhcCCEEEEeccCC
Q 020160 159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---TY-------PFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---~~-------~~~~~l~ell~~aDvV~l~~P~t 220 (330)
++|+||| -|.+|+.+++-++..|++|++.-|++.+.. +. ....++.+.+..-|+|+.+.-..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 5899999 599999999999999999999888876532 11 11234567889999999886544
No 357
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.49 E-value=0.067 Score=53.56 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=67.3
Q ss_pred cCCceEEEEecChHHHH-HHHHHHhCCCEEEEECCCCCCC------CCCCCC-CCHHHHhhcCCEEEEeccCCcc---cc
Q 020160 156 LGGKRVGIVGLGSIGSE-VAKRLEAFGCCVSYNSRNKKPS------VTYPFY-PDVCELAANSDVLIICCALTDQ---TH 224 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~-~A~~l~~~G~~V~~~~~~~~~~------~~~~~~-~~l~ell~~aDvV~l~~P~t~~---t~ 224 (330)
.+++++.|+|+|..|.+ +|+.|+..|++|.++|...... .+.... ..-.+.+..+|+|+..--..+. .+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56889999999999999 7999999999999999765321 122111 1123455689988775322221 11
Q ss_pred -------ccccHH-HHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160 225 -------HLINKQ-VLLA-LGK-KGVIINVGRGAIIDEKEMVGCLLRGE 263 (330)
Q Consensus 225 -------~li~~~-~l~~-mk~-gailIN~~rg~~vd~~aL~~aL~~g~ 263 (330)
.++++- .+.. +++ ..+-|--+.|+---..-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 234333 3333 332 34555556688777777777776543
No 358
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.45 E-value=0.046 Score=51.38 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=33.0
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK 192 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~ 192 (330)
+.|+++.|+|.|..|++++-.|...|+ +|.+++|+..
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ 162 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS 162 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 458999999999999999999999998 6889998764
No 359
>PLN02602 lactate dehydrogenase
Probab=94.39 E-value=0.089 Score=50.99 Aligned_cols=86 Identities=17% Similarity=0.295 Sum_probs=56.0
Q ss_pred ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------------C-CCCC--CCHHHHhhcCCEEEEeccCC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------------T-YPFY--PDVCELAANSDVLIICCALT 220 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------------~-~~~~--~~l~ell~~aDvV~l~~P~t 220 (330)
++|+|||.|.+|..+|-.+...|. ++..+|...+... + .... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 799999999999999999886665 6888888664321 0 0111 233 4589999999985332
Q ss_pred --c-ccc-cccc---------HHHHhcCCCCcEEEEcC
Q 020160 221 --D-QTH-HLIN---------KQVLLALGKKGVIINVG 245 (330)
Q Consensus 221 --~-~t~-~li~---------~~~l~~mk~gailIN~~ 245 (330)
+ .+| .++. .+.+....|.+++|+++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 233 1111 12334456788999987
No 360
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.36 E-value=0.15 Score=50.79 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=60.7
Q ss_pred ceEEEEecChHHHHHHHHHHh--------C--CCEEE-EECCCCCCCC-----CCCCCCCHHHHhhc--CCEEEEeccCC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA--------F--GCCVS-YNSRNKKPSV-----TYPFYPDVCELAAN--SDVLIICCALT 220 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~--------~--G~~V~-~~~~~~~~~~-----~~~~~~~l~ell~~--aDvV~l~~P~t 220 (330)
.+|||+|+|.||+.+++.+.. . +.+|. +++++..... +.....++++++.. .|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 489999999999999988743 2 35554 4566543321 12345688999864 69999887643
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVGRGAII-DEKEMVGCLLRGEI 264 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~rg~~v-d~~aL~~aL~~g~i 264 (330)
.... .-....++.|--+|-..-+-+. .-++|.++.++...
T Consensus 84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 2111 1223456666555533222222 23567777766654
No 361
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.36 E-value=0.072 Score=53.43 Aligned_cols=104 Identities=16% Similarity=0.061 Sum_probs=62.9
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCC-CCHHHHhhcCCEEEEeccCCcccc----
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFY-PDVCELAANSDVLIICCALTDQTH---- 224 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~-~~l~ell~~aDvV~l~~P~t~~t~---- 224 (330)
-.|++++|+|+|.-|.++|+.|+. |.+|+++|....... ..... ....+.+.++|+|+..- .-+.+.
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SP-gI~~~~p~~~ 81 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSP-GIPLTHEIVK 81 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECC-CCCCCCHHHH
Confidence 358899999999999999999995 999999985432211 00111 11234567899887752 222111
Q ss_pred -------ccccHHHH--hcCCCC-cEEEEcCCCcccCHHHHHHHHHc
Q 020160 225 -------HLINKQVL--LALGKK-GVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 225 -------~li~~~~l--~~mk~g-ailIN~~rg~~vd~~aL~~aL~~ 261 (330)
.++++-.+ ..++.. .+=|--+.|+---..-+...|+.
T Consensus 82 ~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 82 IAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 13332222 334332 34444456887777777777775
No 362
>PRK06398 aldose dehydrogenase; Validated
Probab=94.32 E-value=0.23 Score=45.38 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=34.1
Q ss_pred ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160 155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKP 193 (330)
Q Consensus 155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~ 193 (330)
+++||++.|.| -|.||+++|+.|...|++|+..+++...
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~ 42 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS 42 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 47899999999 4799999999999999999988886543
No 363
>PRK12861 malic enzyme; Reviewed
Probab=94.30 E-value=0.55 Score=49.93 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=88.4
Q ss_pred CcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC
Q 020160 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC 182 (330)
Q Consensus 103 gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~ 182 (330)
.|++.|. +.+. +|=.+++-+|+.+|-. |+++...+|.|.|.|.-|..+|+.+...|.
T Consensus 157 ~ipvf~D-D~qG--Ta~v~lA~llnal~~~--------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~ 213 (764)
T PRK12861 157 KIPVFHD-DQHG--TAITVSAAFINGLKVV--------------------GKSIKEVKVVTSGAGAAALACLDLLVDLGL 213 (764)
T ss_pred CCCeecc-ccch--HHHHHHHHHHHHHHHh--------------------CCChhHcEEEEECHhHHHHHHHHHHHHcCC
Confidence 6888887 3333 4555677777666632 456888999999999999999999999998
Q ss_pred ---EEEEECCCC-----CCC--C-------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160 183 ---CVSYNSRNK-----KPS--V-------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 183 ---~V~~~~~~~-----~~~--~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~ 245 (330)
+++.+|+.. +.. . ......+|.|+++.+|+++= +. +.+.++++.++.|.+.+++.=.|
T Consensus 214 ~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 214 PVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred ChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECC
Confidence 688887543 111 0 01123589999999997764 32 25799999999999999999998
Q ss_pred CCcc
Q 020160 246 RGAI 249 (330)
Q Consensus 246 rg~~ 249 (330)
....
T Consensus 289 NPtp 292 (764)
T PRK12861 289 NPTP 292 (764)
T ss_pred CCCc
Confidence 8664
No 364
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.29 E-value=0.072 Score=41.56 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=43.9
Q ss_pred CceEEEEecChHHHHHHHHH-HhCCCEE-EEECCCCCCC----CCCCCCCCHHHHhhc--CCEEEEeccCCc
Q 020160 158 GKRVGIVGLGSIGSEVAKRL-EAFGCCV-SYNSRNKKPS----VTYPFYPDVCELAAN--SDVLIICCALTD 221 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l-~~~G~~V-~~~~~~~~~~----~~~~~~~~l~ell~~--aDvV~l~~P~t~ 221 (330)
..++.|+|+|+.|++++... ...|+.+ .++|.++... .+...+.+++++.+. .|+-++++|...
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~ 74 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEA 74 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHH
Confidence 45899999999999998544 3556654 4566555432 133445578887777 999999998643
No 365
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.28 E-value=0.26 Score=46.98 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=47.4
Q ss_pred cCCceEEEEec---ChHHHHHHHHHHhCCC-EEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEE
Q 020160 156 LGGKRVGIVGL---GSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLII 215 (330)
Q Consensus 156 l~g~~vgIiG~---G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l 215 (330)
+.|.+|++||= +++..+++..+..+|+ +|.+..+..-... .+....++++.++.+|+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67999999997 6999999999999999 8987766432111 12234789999999999976
No 366
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.28 E-value=0.072 Score=52.86 Aligned_cols=87 Identities=30% Similarity=0.256 Sum_probs=57.1
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-------CCCC----CCCC---HHH-HhhcCCEEEEeccCC
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTYP----FYPD---VCE-LAANSDVLIICCALT 220 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~~----~~~~---l~e-ll~~aDvV~l~~P~t 220 (330)
+..+++.|+|+|.+|+.+++.|...|.+|++.+++++.. .+.. -..+ +.+ -+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 456899999999999999999999999999998876421 0111 0112 222 357899998887755
Q ss_pred ccccccccHHHHhcCCCCcEEEEc
Q 020160 221 DQTHHLINKQVLLALGKKGVIINV 244 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~ 244 (330)
.. +++-....+.+.+..+++-+
T Consensus 309 ~~--n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EA--NILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HH--HHHHHHHHHHhCCCeEEEEE
Confidence 33 23333444555555555544
No 367
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.27 E-value=0.35 Score=45.99 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=63.3
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCC--CCCC-------------CCC--C--CCCHHHHhhcCCEEEEe
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNK--KPSV-------------TYP--F--YPDVCELAANSDVLIIC 216 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~--~~~~-------------~~~--~--~~~l~ell~~aDvV~l~ 216 (330)
++|+|+|. |.+|..+|..+...|. +|..+|+.. +... +.. . ..+ .+.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 58999998 9999999999998776 488888844 2110 000 0 123 3459999999999
Q ss_pred ccCCcc---cc-cc-------cc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH----HHcCCceEEE
Q 020160 217 CALTDQ---TH-HL-------IN--KQVLLALGKKGVIINVGRGAIIDEKEMVGC----LLRGEIGGAG 268 (330)
Q Consensus 217 ~P~t~~---t~-~l-------i~--~~~l~~mk~gailIN~~rg~~vd~~aL~~a----L~~g~i~ga~ 268 (330)
...... +| .+ +. ...+....+.+++|+++ +.+|.-..+-. +..+++.|.+
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g 146 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG 146 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence 753221 21 11 10 11233445677777776 55554443322 3344555553
No 368
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.26 E-value=0.4 Score=47.18 Aligned_cols=179 Identities=18% Similarity=0.151 Sum_probs=110.8
Q ss_pred cCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCC
Q 020160 102 RGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG 181 (330)
Q Consensus 102 ~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G 181 (330)
..|+|.|.-- .-+|=.+++-+++.+|- .|+.|+..+|.+.|.|.-|-.+++.+++.|
T Consensus 166 ~~IPvFhDDq---qGTaiv~lA~llnalk~--------------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g 222 (432)
T COG0281 166 MNIPVFHDDQ---QGTAIVTLAALLNALKL--------------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG 222 (432)
T ss_pred CCCCcccccc---cHHHHHHHHHHHHHHHH--------------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence 3577777633 23455566666665554 266789999999999999999999999999
Q ss_pred C---EEEEECCCCCCCC--------CCCC---------CCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEE
Q 020160 182 C---CVSYNSRNKKPSV--------TYPF---------YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241 (330)
Q Consensus 182 ~---~V~~~~~~~~~~~--------~~~~---------~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gail 241 (330)
+ +|+.+|+..--.. .+.+ ..+ ++.+..+|+++-+- ..+.+.++.++.|.+.+++
T Consensus 223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiI 296 (432)
T COG0281 223 VKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPII 296 (432)
T ss_pred CCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEE
Confidence 8 5888887532110 0000 011 44778899876542 2288999999999999999
Q ss_pred EEcCCCcccCHHHHHHHHHcC-CceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHH-----HHHHHHHHHHHHHH
Q 020160 242 INVGRGAIIDEKEMVGCLLRG-EIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES-----FKDVCELAVANLEA 315 (330)
Q Consensus 242 IN~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~-----~~~~~~~~~~nl~~ 315 (330)
.=.|-...--.-+.+..-..| .|-+-|- |.. |- +..|+++=|-++-..-++ -+.|.-.+++-|-+
T Consensus 297 falaNP~pEi~Pe~a~~~~~~aaivaTGr------sd~--Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~ 367 (432)
T COG0281 297 FALANPTPEITPEDAKEWGDGAAIVATGR------SDY--PN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD 367 (432)
T ss_pred eecCCCCccCCHHHHhhcCCCCEEEEeCC------CCC--cc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence 888876521111111111111 3432222 211 11 678999999987532222 34566666666666
Q ss_pred HHc
Q 020160 316 FFS 318 (330)
Q Consensus 316 ~~~ 318 (330)
+..
T Consensus 368 ~~~ 370 (432)
T COG0281 368 LAR 370 (432)
T ss_pred hcc
Confidence 654
No 369
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.21 E-value=0.12 Score=51.54 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=66.0
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---------CCCCCC--CCHHHHhhcCCEEEEeccCCcccc
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---------VTYPFY--PDVCELAANSDVLIICCALTDQTH 224 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~ell~~aDvV~l~~P~t~~t~ 224 (330)
+.++++.|+|.|.+|.++|+.|...|++|.++|...... .+.... ...++.+..+|+|+..--..+...
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 568999999999999999999999999999998755431 011110 112334578999887633222211
Q ss_pred c----------ccc-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160 225 H----------LIN-KQVLLA-LG---KKGVIINVGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 225 ~----------li~-~~~l~~-mk---~gailIN~~rg~~vd~~aL~~aL~~g 262 (330)
. +++ .+.+.. ++ ...+-|--+.|+.--..-+...|+..
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 1 222 223323 32 23445555568877777777777653
No 370
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.21 E-value=0.29 Score=46.97 Aligned_cols=104 Identities=13% Similarity=0.221 Sum_probs=62.4
Q ss_pred ceEEEEecChHHHHHHHHHHh--------CCCEEEE-ECCCCCC--CCC--------------C-CC-CC--CHHHHh-h
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA--------FGCCVSY-NSRNKKP--SVT--------------Y-PF-YP--DVCELA-A 208 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~--------~G~~V~~-~~~~~~~--~~~--------------~-~~-~~--~l~ell-~ 208 (330)
++|+|+|||.+|+.+++.+.. ++.+|.+ .|++... ..+ . .+ .. ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 379999999999999999875 5667654 3443210 000 0 01 12 455554 4
Q ss_pred cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 020160 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII-DEKEMVGCLLRGE 263 (330)
Q Consensus 209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v-d~~aL~~aL~~g~ 263 (330)
.+|+|+=++|...+-..-. .-..+.++.|.-+|-..-|.+. .-+.|.+..+++.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred CCCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence 5899998887532111111 2345567788888877777665 3555666666554
No 371
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.19 E-value=0.07 Score=50.69 Aligned_cols=66 Identities=27% Similarity=0.369 Sum_probs=47.8
Q ss_pred ceEEEEecChHHH-HHHHHHHhCC--CEE-EEECCCCCCC------CCC-CCCCCHHHHhhc--CCEEEEeccCCcccc
Q 020160 159 KRVGIVGLGSIGS-EVAKRLEAFG--CCV-SYNSRNKKPS------VTY-PFYPDVCELAAN--SDVLIICCALTDQTH 224 (330)
Q Consensus 159 ~~vgIiG~G~IG~-~~A~~l~~~G--~~V-~~~~~~~~~~------~~~-~~~~~l~ell~~--aDvV~l~~P~t~~t~ 224 (330)
.++||||+|.+++ ..+..++..+ +.+ ..+|+++... .+. ..+.+++++++. -|+|++++|...+..
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e 82 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence 5899999997774 5888888776 344 5668876542 133 357799999987 489999999765433
No 372
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.13 E-value=0.13 Score=46.18 Aligned_cols=38 Identities=34% Similarity=0.528 Sum_probs=33.8
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
++.++++.|+|. |.||+.+++.|...|++|+..+|++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999995 89999999999999999999988764
No 373
>PRK06128 oxidoreductase; Provisional
Probab=94.08 E-value=0.16 Score=47.61 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=30.7
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECC
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSR 189 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~ 189 (330)
.+.||++.|.|. |.||+.+|+.|...|++|+...+
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL 87 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 478999999995 89999999999999999976544
No 374
>PRK05442 malate dehydrogenase; Provisional
Probab=94.07 E-value=0.43 Score=45.83 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=58.6
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CC--------CCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKP--SV-------TY--------PFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~ell~~aDvV 213 (330)
++|+|||. |.+|..+|-.+...|. ++..+|..... .. .. ....+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 49999998 9999999998765443 68888875432 11 00 1123455889999999
Q ss_pred EEeccC--Cc-cccc-cc--c----HH---HHhc-CCCCcEEEEcCCCcccCHHHHH
Q 020160 214 IICCAL--TD-QTHH-LI--N----KQ---VLLA-LGKKGVIINVGRGAIIDEKEMV 256 (330)
Q Consensus 214 ~l~~P~--t~-~t~~-li--~----~~---~l~~-mk~gailIN~~rg~~vd~~aL~ 256 (330)
+++.-. .+ +||. ++ | ++ .+.. .++.+++|.++ ..+|.-..+
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v 139 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALI 139 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHH
Confidence 997542 11 1221 11 1 11 2222 44688999987 556555533
No 375
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.05 E-value=0.1 Score=38.89 Aligned_cols=35 Identities=34% Similarity=0.455 Sum_probs=31.4
Q ss_pred eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS 194 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~ 194 (330)
++.|||.|.+|-++|..++.+|.+|+.+.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58899999999999999999999999988876644
No 376
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.04 E-value=0.16 Score=48.64 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=44.6
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCC--CEEEEECCCCCCCC--C-------CCC--C---CCHHHHhhcCCEEEEecc
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFG--CCVSYNSRNKKPSV--T-------YPF--Y---PDVCELAANSDVLIICCA 218 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~--~-------~~~--~---~~l~ell~~aDvV~l~~P 218 (330)
++.++|+|||. |.||..+|..+...+ .++..+|....... . ... . .+..+.++.||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56779999999 999999999998444 57888887322110 0 111 1 122678999999998764
Q ss_pred C
Q 020160 219 L 219 (330)
Q Consensus 219 ~ 219 (330)
.
T Consensus 86 ~ 86 (321)
T PTZ00325 86 V 86 (321)
T ss_pred C
Confidence 3
No 377
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.02 E-value=0.18 Score=47.87 Aligned_cols=83 Identities=12% Similarity=0.104 Sum_probs=54.6
Q ss_pred CceEEEEecChHHHHHHHHHHh-CCCEEE-EECCCCCCC-------CCCCC-CCCHHHHhh-----cCCEEEEeccCCcc
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEA-FGCCVS-YNSRNKKPS-------VTYPF-YPDVCELAA-----NSDVLIICCALTDQ 222 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~-------~~~~~-~~~l~ell~-----~aDvV~l~~P~t~~ 222 (330)
..++||||.|.||+..+..+.. -++++. .++++++.. .+... +.+.+++++ +.|+|+.++|...+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4689999999999997777664 356765 566654321 13333 467889885 58889999875433
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 020160 223 THHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 223 t~~li~~~~l~~mk~gailIN~~ 245 (330)
.+ -.....+.|..+|+-+
T Consensus 84 ~e-----~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 VR-----HAAKLREAGIRAIDLT 101 (302)
T ss_pred HH-----HHHHHHHcCCeEEECC
Confidence 22 2233356677777765
No 378
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.00 E-value=0.17 Score=48.23 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=51.8
Q ss_pred ceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc-C
Q 020160 159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA-L 235 (330)
Q Consensus 159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~-m 235 (330)
.+|+||| -|-.|+++.+.|.... +++.....+..... .+.++.++++|++++++|.....+ .... .
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~~s~~------~~~~~~ 71 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDDAARE------AVALID 71 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHHHHHH------HHHHHH
Confidence 5899999 7999999999998655 35555443322211 234466788999999998663322 2222 2
Q ss_pred CCCcEEEEcC
Q 020160 236 GKKGVIINVG 245 (330)
Q Consensus 236 k~gailIN~~ 245 (330)
+.|..+||.|
T Consensus 72 ~~g~~VIDlS 81 (313)
T PRK11863 72 NPATRVIDAS 81 (313)
T ss_pred hCCCEEEECC
Confidence 4688899988
No 379
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.98 E-value=0.15 Score=48.60 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=57.1
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC-----CCCHHHHhh---cCCEEEEeccCCcc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF-----YPDVCELAA---NSDVLIICCALTDQ 222 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~ell~---~aDvV~l~~P~t~~ 222 (330)
.|++|.|+|.|.+|...++.++..|. +|++.+++++.. .+... ..++.++.. ..|+++-+.... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 58999999999999999999999999 588887765431 12211 113334332 268877765421 1
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 020160 223 THHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 223 t~~li~~~~l~~mk~gailIN~~r 246 (330)
+ + ...++.+++++.++.+|.
T Consensus 248 ~--~--~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S--I--NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H--H--HHHHHHhhcCCEEEEEcc
Confidence 1 1 456777888888888875
No 380
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.97 E-value=0.12 Score=48.80 Aligned_cols=85 Identities=18% Similarity=0.104 Sum_probs=51.3
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEE-EEECCCCCCCCCC---CCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCV-SYNSRNKKPSVTY---PFYPDVCELAANSDVLIICCALTDQTHHLINKQVL 232 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V-~~~~~~~~~~~~~---~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l 232 (330)
.|+++.|+|.|.||...++.++.+|+++ .+.++........ .....-++.-...|+|+-++... .+ + ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~-~~---~-~~~~ 218 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDP-SL---I-DTLV 218 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCH-HH---H-HHHH
Confidence 4678999999999999999999999974 4555543221111 11111111112467777655321 11 1 3456
Q ss_pred hcCCCCcEEEEcCC
Q 020160 233 LALGKKGVIINVGR 246 (330)
Q Consensus 233 ~~mk~gailIN~~r 246 (330)
+.+++++.++.+|-
T Consensus 219 ~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 219 RRLAKGGEIVLAGF 232 (308)
T ss_pred HhhhcCcEEEEEee
Confidence 77888888777753
No 381
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.92 E-value=0.31 Score=46.46 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=56.8
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------C---CCCC-----CCHHHHhhcCCEEEEeccCC
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------T---YPFY-----PDVCELAANSDVLIICCALT 220 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------~---~~~~-----~~l~ell~~aDvV~l~~P~t 220 (330)
++|+|||. |.+|..+|-.+...|. ++..+|.. .... . .... .++.+.++.||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 48999999 9999999999987774 68888876 2110 1 0111 23467899999999885432
Q ss_pred --c-cccc-cc--c-------HHHHhcCCCCcEEEEcCCC
Q 020160 221 --D-QTHH-LI--N-------KQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 221 --~-~t~~-li--~-------~~~l~~mk~gailIN~~rg 247 (330)
+ ++|- ++ | .+.+..-.|.+++|+++-.
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 2 2221 11 1 1233344689999998653
No 382
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.85 E-value=0.061 Score=44.46 Aligned_cols=33 Identities=42% Similarity=0.615 Sum_probs=28.3
Q ss_pred CceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
.++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999998898 67777654
No 383
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.83 E-value=0.5 Score=45.30 Aligned_cols=93 Identities=19% Similarity=0.162 Sum_probs=57.4
Q ss_pred eEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CCC--------CCCCHHHHhhcCCEEE
Q 020160 160 RVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKP--SV-------TYP--------FYPDVCELAANSDVLI 214 (330)
Q Consensus 160 ~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~--~~-------~~~--------~~~~l~ell~~aDvV~ 214 (330)
+|+|||. |.+|..+|..+...|. ++..+|+.+.. .. ... ...+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999986554 48888875432 11 010 0124468899999999
Q ss_pred EeccCCc---ccc-ccc--c-------HHHHhcC-CCCcEEEEcCCCcccCHHH
Q 020160 215 ICCALTD---QTH-HLI--N-------KQVLLAL-GKKGVIINVGRGAIIDEKE 254 (330)
Q Consensus 215 l~~P~t~---~t~-~li--~-------~~~l~~m-k~gailIN~~rg~~vd~~a 254 (330)
+..-... +|+ .++ | ...+... +|.+++|.++ ..+|.-+
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 8753321 111 111 1 1123334 5788888876 5555544
No 384
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.80 E-value=0.26 Score=47.08 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=57.7
Q ss_pred eEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCCC-----CC----CCC-----CCHHHHhhcCCEEEEeccCCc-
Q 020160 160 RVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-----TY----PFY-----PDVCELAANSDVLIICCALTD- 221 (330)
Q Consensus 160 ~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-----~~----~~~-----~~l~ell~~aDvV~l~~P~t~- 221 (330)
||+|||. |.+|..+|-.|...|. ++..+|..+.... .. ... .++.+.++.||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 6899999 9999999999876554 7888887652110 11 111 134689999999999865321
Q ss_pred --cccc-cc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 020160 222 --QTHH-LI--N-------KQVLLALGKKGVIINVGRGAIIDE 252 (330)
Q Consensus 222 --~t~~-li--~-------~~~l~~mk~gailIN~~rg~~vd~ 252 (330)
.+|. ++ | .+.+..-.|.+++|+++- .+|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 1111 11 1 122334468999999854 4553
No 385
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.70 E-value=2.3 Score=38.57 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
+|..-.++|++|.|||-|.++..=++.|..+|.+|+++++...
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 3445568899999999999999988999999999999987654
No 386
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.67 E-value=0.11 Score=49.31 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=42.3
Q ss_pred eEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC----------CC------CCCCCHHHHhhcCCEEEEecc
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV----------TY------PFYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~----------~~------~~~~~l~ell~~aDvV~l~~P 218 (330)
||+|||.|.+|..+|..+...|. ++..+|...+... .+ ....+-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 68999999999999998876665 6888887654321 10 001123578999999999754
No 387
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.66 E-value=0.2 Score=47.94 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=55.2
Q ss_pred CCceEEEEecChHHHHHHHHHHh-CC-CEEEEECCCCCCCC---CCCCCCCHHHHhh--cCCEEEEeccCCccccccccH
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEA-FG-CCVSYNSRNKKPSV---TYPFYPDVCELAA--NSDVLIICCALTDQTHHLINK 229 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~~---~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~ 229 (330)
.|.+|.|+|.|.||...++.++. +| .+|++.++++.+.. ........+++.+ ..|+|+=++... .+...+ .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~ 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence 48899999999999999998886 54 68888887654321 1111111222222 368887766521 011112 4
Q ss_pred HHHhcCCCCcEEEEcCC
Q 020160 230 QVLLALGKKGVIINVGR 246 (330)
Q Consensus 230 ~~l~~mk~gailIN~~r 246 (330)
+.++.+++++.++.+|-
T Consensus 241 ~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 241 QIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHhCcCCcEEEEEee
Confidence 56788899888887763
No 388
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=93.64 E-value=0.61 Score=44.49 Aligned_cols=62 Identities=10% Similarity=0.150 Sum_probs=48.0
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC-C-----------CC-CCCCCCHHHHhhcCCEEEEe
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP-S-----------VT-YPFYPDVCELAANSDVLIIC 216 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-~-----------~~-~~~~~~l~ell~~aDvV~l~ 216 (330)
.+.|+||++||- +++.++++..+..+|++|.+..+..-. . .+ .....++++.++++|+|..-
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 378999999996 799999999999999999887764321 0 01 12246889999999999873
No 389
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.64 E-value=0.39 Score=48.00 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=63.2
Q ss_pred ceEEEEec-ChHHHHHHHHHHhC-------CC--EEEEECCCCCCCCC---------------CCCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAF-------GC--CVSYNSRNKKPSVT---------------YPFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~-------G~--~V~~~~~~~~~~~~---------------~~~~~~l~ell~~aDvV 213 (330)
-+|+|||. |.+|..+|-.+... |. +++.+|+..+...+ .....+-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 49999999 99999999988755 44 67788876654210 01012445889999999
Q ss_pred EEeccC--Ccc-ccc-cc--c-------HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160 214 IICCAL--TDQ-THH-LI--N-------KQVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 214 ~l~~P~--t~~-t~~-li--~-------~~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
++..-. .+. +|. ++ | ...+.. -.|.+++|.++ ..+|.-+.+-.-.+
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s 240 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA 240 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 998543 111 111 11 1 123344 46789999886 56666655443333
No 390
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=93.59 E-value=1.3 Score=41.94 Aligned_cols=89 Identities=13% Similarity=0.214 Sum_probs=64.6
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-C-------------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-V-------------T--YPFYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-~-------------~--~~~~~~l~ell~~aDvV~l~~P 218 (330)
++|+|+..+|= .+++.++......+||+|....+..-.. . + .....+.++..+.+|+|..=+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 89999999995 5799999999999999998765543211 0 1 2235689999999999976543
Q ss_pred CC--cccc-----------ccccHHHHhcCCCCcEEEEc
Q 020160 219 LT--DQTH-----------HLINKQVLLALGKKGVIINV 244 (330)
Q Consensus 219 ~t--~~t~-----------~li~~~~l~~mk~gailIN~ 244 (330)
.+ ++.+ .-+|.+.++.-+++++|.-|
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 21 2221 45677888888888888877
No 391
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.57 E-value=0.12 Score=48.76 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=44.8
Q ss_pred ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-------CCCCCHHHHhhcCCEEEEecc
Q 020160 159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTY-------PFYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~-------~~~~~l~ell~~aDvV~l~~P 218 (330)
++|.|.| .|.||+.+++.|...|++|.+..|+.... .+. ....++.+.++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4789999 59999999999999999999888764321 111 112356777899998887644
No 392
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.56 E-value=0.16 Score=47.13 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNK 191 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~ 191 (330)
.|.++.|+|.|.+|...++.++.+|.+ |++.++++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 588999999999999999999999997 77776654
No 393
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.50 E-value=0.12 Score=49.63 Aligned_cols=85 Identities=27% Similarity=0.328 Sum_probs=54.7
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC---CCC-----CCCCCC----CCHHH--HhhcCCEEEEeccCCcc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK---KPS-----VTYPFY----PDVCE--LAANSDVLIICCALTDQ 222 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~---~~~-----~~~~~~----~~l~e--ll~~aDvV~l~~P~t~~ 222 (330)
.|.++.|+|.|.+|...++.++..|.+|++.+++. .+. .+.... .++.+ .....|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 58899999999999999999999999999888732 110 111110 11111 1234677777664221
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 020160 223 THHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 223 t~~li~~~~l~~mk~gailIN~~r 246 (330)
.+ .+.++.+++++.++.+|.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 12 456677888887777664
No 394
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.49 E-value=0.17 Score=48.65 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=51.2
Q ss_pred CceEEEEe-cChHHHHHHHHHHhCCC---EEEEECCCCCCC--CCC---C-CCCCHH-HHhhcCCEEEEeccCCcccccc
Q 020160 158 GKRVGIVG-LGSIGSEVAKRLEAFGC---CVSYNSRNKKPS--VTY---P-FYPDVC-ELAANSDVLIICCALTDQTHHL 226 (330)
Q Consensus 158 g~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~~~~~~~~--~~~---~-~~~~l~-ell~~aDvV~l~~P~t~~t~~l 226 (330)
+++|+|+| -|.+|+.+.+.|...|+ ++.+..+..... ... . ...+++ +.+.++|+|++++|.... +.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s-~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS-KKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH-HHH
Confidence 46899999 69999999999998665 345543332221 111 0 111222 234789999999986532 222
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q 020160 227 INKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 227 i~~~~l~~mk~gailIN~~r 246 (330)
. .. .++.|+++|+.|.
T Consensus 80 ~-~~---~~~~G~~VIDlS~ 95 (334)
T PRK14874 80 A-PK---AAAAGAVVIDNSS 95 (334)
T ss_pred H-HH---HHhCCCEEEECCc
Confidence 1 11 2356889998774
No 395
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.40 E-value=0.19 Score=47.59 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=53.1
Q ss_pred EEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------C--------CCCCCCHHHHhhcCCEEEEeccCC--c-c
Q 020160 163 IVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------T--------YPFYPDVCELAANSDVLIICCALT--D-Q 222 (330)
Q Consensus 163 IiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------~--------~~~~~~l~ell~~aDvV~l~~P~t--~-~ 222 (330)
|||.|.+|..+|..+...+. ++..+|....... . .....+-.+.+++||+|+++.-.. + .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999987665 6888888654321 0 011123457899999999975431 1 1
Q ss_pred cc-ccc--c-------HHHHhcCCCCcEEEEcC
Q 020160 223 TH-HLI--N-------KQVLLALGKKGVIINVG 245 (330)
Q Consensus 223 t~-~li--~-------~~~l~~mk~gailIN~~ 245 (330)
+| .++ | .+.+....|.+++|+++
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 22 111 1 12334457889999986
No 396
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=93.39 E-value=0.23 Score=45.83 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=68.0
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160 170 GSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239 (330)
Q Consensus 170 G~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga 239 (330)
|..+|-.+...|++|+..+++.+-.. +....++-.+..+.+.+.++-+|....|-++. ++.++.++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67888889999999999988765321 33334455578899999999999998888754 68999999999
Q ss_pred EEEEcCCCcccCHHHHHHHH
Q 020160 240 VIINVGRGAIIDEKEMVGCL 259 (330)
Q Consensus 240 ilIN~~rg~~vd~~aL~~aL 259 (330)
++.||..-+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999875544 666666
No 397
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.38 E-value=0.33 Score=46.84 Aligned_cols=85 Identities=25% Similarity=0.305 Sum_probs=52.9
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCC---CC---CHHHHhhcCCEEEEeccCCcccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPF---YP---DVCELAANSDVLIICCALTDQTH 224 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~---~~---~l~ell~~aDvV~l~~P~t~~t~ 224 (330)
.|++|.|.|.|.+|...++.++.+|.+|++.+.+.... .+... .. .+.++....|+++-++.. +.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~~- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VHA- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HHH-
Confidence 58899999999999999999999999987765543321 12110 11 122222345777665431 111
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 020160 225 HLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~r 246 (330)
+ .+.++.+++++.++.+|.
T Consensus 261 -~--~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 -L--GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -H--HHHHHHhcCCcEEEEeCC
Confidence 1 345667777777777763
No 398
>PRK10206 putative oxidoreductase; Provisional
Probab=93.37 E-value=0.14 Score=49.40 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=42.6
Q ss_pred eEEEEecChHHHH-HHHHHHh--CCCEEE-EECCCCCCCC-----C-CCCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160 160 RVGIVGLGSIGSE-VAKRLEA--FGCCVS-YNSRNKKPSV-----T-YPFYPDVCELAA--NSDVLIICCALTDQ 222 (330)
Q Consensus 160 ~vgIiG~G~IG~~-~A~~l~~--~G~~V~-~~~~~~~~~~-----~-~~~~~~l~ell~--~aDvV~l~~P~t~~ 222 (330)
++||||+|.|++. .+..+.. -+++|. ++|++++... + ...+.+++++++ +.|+|++++|...+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 7999999998863 3443422 357775 5777653221 1 234678999996 57999999986644
No 399
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=93.34 E-value=0.28 Score=47.41 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=51.0
Q ss_pred CCceEEEEe-cChHHHHHHHHHHhCCC---EEEEE--CCCCCCCC---CCC-CCCCH-HHHhhcCCEEEEeccCCccccc
Q 020160 157 GGKRVGIVG-LGSIGSEVAKRLEAFGC---CVSYN--SRNKKPSV---TYP-FYPDV-CELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~--~~~~~~~~---~~~-~~~~l-~ell~~aDvV~l~~P~t~~t~~ 225 (330)
...+|+|+| -|.+|+.+.+.|...++ ++.+. .++..+.. +.. ...++ .+.+.++|+|++++|.... .
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s-~- 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSIS-K- 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHH-H-
Confidence 457899999 69999999999988555 33333 22222111 100 01111 2445889999999986522 2
Q ss_pred cccHHHHhc-CCCCcEEEEcC
Q 020160 226 LINKQVLLA-LGKKGVIINVG 245 (330)
Q Consensus 226 li~~~~l~~-mk~gailIN~~ 245 (330)
+.... .+.|+.+||.|
T Consensus 84 ----~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 84 ----KFGPIAVDKGAVVVDNS 100 (344)
T ss_pred ----HHHHHHHhCCCEEEECC
Confidence 22222 25688999988
No 400
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.32 E-value=0.24 Score=45.86 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=44.8
Q ss_pred eEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--C-------CCCCCCHHHHh------hc-CCEEEEeccCC
Q 020160 160 RVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--T-------YPFYPDVCELA------AN-SDVLIICCALT 220 (330)
Q Consensus 160 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~-------~~~~~~l~ell------~~-aDvV~l~~P~t 220 (330)
+|.|.|. |.+|+.+++.|...|++|.+..|++.... + +...+++.+.+ .. +|.|+++.|..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 4778886 99999999999999999999988765321 1 11123555666 45 89999887754
No 401
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.26 E-value=0.27 Score=47.16 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=58.7
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CC--------CCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKP--SV-------TY--------PFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~ell~~aDvV 213 (330)
.+|+|||. |.+|..+|-.+...|. ++..+|..... .. .. ....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999987664 68888875421 11 00 0113456889999999
Q ss_pred EEeccCC--c-cccc-cc--cH-------HHHhcCCC-CcEEEEcCCCcccCHHH
Q 020160 214 IICCALT--D-QTHH-LI--NK-------QVLLALGK-KGVIINVGRGAIIDEKE 254 (330)
Q Consensus 214 ~l~~P~t--~-~t~~-li--~~-------~~l~~mk~-gailIN~~rg~~vd~~a 254 (330)
+++.-.. + +||. ++ |. ..+....| .++++.++ ..+|.-.
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 9986432 1 1221 11 11 12333344 88999886 5555444
No 402
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.24 E-value=0.29 Score=45.88 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=45.1
Q ss_pred CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC-------------CC-------CCCCCCHHHHhhcCCEEEE
Q 020160 157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------------VT-------YPFYPDVCELAANSDVLII 215 (330)
Q Consensus 157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------------~~-------~~~~~~l~ell~~aDvV~l 215 (330)
+|+++.|.| .|-||+.++++|...|++|.+..++.... .. .....+++++++.+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 478999999 69999999999999999998776654321 00 1112346677888998876
Q ss_pred ecc
Q 020160 216 CCA 218 (330)
Q Consensus 216 ~~P 218 (330)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 653
No 403
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.23 E-value=0.052 Score=43.67 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=57.3
Q ss_pred ecChHHHHHHHHHHhC----CCEEE-EECCC--CCCC-----CCCCCCCCHHHHhh--cCCEEEEeccCCccccccccHH
Q 020160 165 GLGSIGSEVAKRLEAF----GCCVS-YNSRN--KKPS-----VTYPFYPDVCELAA--NSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 165 G~G~IG~~~A~~l~~~----G~~V~-~~~~~--~~~~-----~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~ 230 (330)
|+|.||+.+++.+... +++|. +++++ .... .......++++++. ..|+|+=|.+..+.. .-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence 8999999999999865 67775 45555 0111 12234568999988 899999885433222 23
Q ss_pred HHhcCCCCcEEEEcCCCcccC---HHHHHHHHHcCC
Q 020160 231 VLLALGKKGVIINVGRGAIID---EKEMVGCLLRGE 263 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd---~~aL~~aL~~g~ 263 (330)
..+.++.|.-+|-.+-|.+.| .+.|.++.+++.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g 111 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNG 111 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcC
Confidence 455577888899888888772 333444444443
No 404
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.17 E-value=0.33 Score=46.17 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=51.5
Q ss_pred ceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCC
Q 020160 159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG 236 (330)
Q Consensus 159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk 236 (330)
-+|+|+| -|-.|.++.++|.... +++.....+... . ..+.+++++++|++++++|.... ..+. ..+ .+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~----~-~~~~~~~~~~~D~vFlalp~~~s-~~~~--~~~--~~ 71 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK----D-AAERAKLLNAADVAILCLPDDAA-REAV--SLV--DN 71 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc----C-cCCHhHhhcCCCEEEECCCHHHH-HHHH--HHH--Hh
Confidence 3799999 6999999999998643 466554332211 1 12456788899999999996533 2221 112 24
Q ss_pred CCcEEEEcC
Q 020160 237 KKGVIINVG 245 (330)
Q Consensus 237 ~gailIN~~ 245 (330)
.|..+||.|
T Consensus 72 ~g~~VIDlS 80 (310)
T TIGR01851 72 PNTCIIDAS 80 (310)
T ss_pred CCCEEEECC
Confidence 688899988
No 405
>PLN02214 cinnamoyl-CoA reductase
Probab=93.15 E-value=0.29 Score=46.93 Aligned_cols=63 Identities=24% Similarity=0.215 Sum_probs=46.6
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC------------C-------CCCCCCCHHHHhhcCCEEEE
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS------------V-------TYPFYPDVCELAANSDVLII 215 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~-------~~~~~~~l~ell~~aDvV~l 215 (330)
+.++++.|.|. |-||+.+++.|...|++|.+..|+.... . ......+++++++.+|+|+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 67899999997 9999999999999999998887754320 0 00112345677888998877
Q ss_pred ecc
Q 020160 216 CCA 218 (330)
Q Consensus 216 ~~P 218 (330)
+..
T Consensus 88 ~A~ 90 (342)
T PLN02214 88 TAS 90 (342)
T ss_pred ecC
Confidence 664
No 406
>PRK15076 alpha-galactosidase; Provisional
Probab=93.14 E-value=0.13 Score=51.33 Aligned_cols=109 Identities=10% Similarity=0.034 Sum_probs=65.7
Q ss_pred ceEEEEecChHHHHHHH--HH---HhC-CCEEEEECCCCCCCC-------------C----CCCCCCHHHHhhcCCEEEE
Q 020160 159 KRVGIVGLGSIGSEVAK--RL---EAF-GCCVSYNSRNKKPSV-------------T----YPFYPDVCELAANSDVLII 215 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~--~l---~~~-G~~V~~~~~~~~~~~-------------~----~~~~~~l~ell~~aDvV~l 215 (330)
++|+|||.|.+|...+- .+ .++ |.+|..+|..++... + .....++.+.++.||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999955443 22 233 458999998764311 1 1123467799999999999
Q ss_pred eccCC--cccc-----------------cc----------cc-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020160 216 CCALT--DQTH-----------------HL----------IN-------KQVLLALGKKGVIINVGRGAIIDEKEMVGCL 259 (330)
Q Consensus 216 ~~P~t--~~t~-----------------~l----------i~-------~~~l~~mk~gailIN~~rg~~vd~~aL~~aL 259 (330)
+.-.. +.-+ .. -+ .+.+....|++++||.+-..=+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 87553 1110 00 00 1223445689999999876544444454 33
Q ss_pred HcCCceEEE
Q 020160 260 LRGEIGGAG 268 (330)
Q Consensus 260 ~~g~i~ga~ 268 (330)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 444666554
No 407
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.11 E-value=0.39 Score=45.29 Aligned_cols=38 Identities=37% Similarity=0.503 Sum_probs=33.0
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK 191 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~ 191 (330)
..|.+.+|.|+|+|.+|.++|+.|...|. +++.+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 35889999999999999999999999998 577777653
No 408
>PRK06182 short chain dehydrogenase; Validated
Probab=93.09 E-value=0.14 Score=47.04 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
.++++.|.|. |.||+.+|+.|...|++|+..+|+.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4789999995 89999999999999999998888654
No 409
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.06 E-value=0.14 Score=51.58 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=65.7
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCC--CHHHHhhcCCEEEEec--c-CCccc
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYP--DVCELAANSDVLIICC--A-LTDQT 223 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~--~l~ell~~aDvV~l~~--P-~t~~t 223 (330)
.+.++++.|+|+|..|.++|+.|...|++|.++|+..... .+..... ...+.+.++|+|+..- | ..+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 4788999999999999999999999999999999754321 1222211 1234466889887752 2 12211
Q ss_pred c-------ccccHHHHhc-------C-CCC-cEEEEcCCCcccCHHHHHHHHHcC
Q 020160 224 H-------HLINKQVLLA-------L-GKK-GVIINVGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 224 ~-------~li~~~~l~~-------m-k~g-ailIN~~rg~~vd~~aL~~aL~~g 262 (330)
. .+++.-.+.. + ++. .+-|--+-|+.--..-+...|+..
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 1 1223222321 1 122 344444568877777777777653
No 410
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=93.00 E-value=0.55 Score=45.34 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=46.0
Q ss_pred cccCCceEEEEec---ChHHHHHHHHHH-hCCCEEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEe
Q 020160 154 SKLGGKRVGIVGL---GSIGSEVAKRLE-AFGCCVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIIC 216 (330)
Q Consensus 154 ~~l~g~~vgIiG~---G~IG~~~A~~l~-~~G~~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~ 216 (330)
..+.|+||++||= +++..+.+..+. .+|++|.+..+..-... + +....++++.++++|+|..-
T Consensus 155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 3478999999997 588888888766 45999987776432110 1 12246899999999999873
No 411
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=92.93 E-value=0.36 Score=45.49 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=51.0
Q ss_pred ceEEEEecChHHHHHHHHHHh-CCCEEE-EECCCCCCC-------CCCC-CCCCHHHHhh--cCCEEEEeccCCcccccc
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA-FGCCVS-YNSRNKKPS-------VTYP-FYPDVCELAA--NSDVLIICCALTDQTHHL 226 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~-------~~~~-~~~~l~ell~--~aDvV~l~~P~t~~t~~l 226 (330)
.++||||.|.||+..+..+.. -++++. +++++++.. .+.. .+.+.++++. +-|+|++++|...+.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e-- 79 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR-- 79 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence 479999999999988776654 456765 466655431 1332 2457888885 5788999998654322
Q ss_pred ccHHHHhcCCCCcEEEEc
Q 020160 227 INKQVLLALGKKGVIINV 244 (330)
Q Consensus 227 i~~~~l~~mk~gailIN~ 244 (330)
-....++.|..+++-
T Consensus 80 ---~a~~al~aGk~VIde 94 (285)
T TIGR03215 80 ---HARLLAELGKIVIDL 94 (285)
T ss_pred ---HHHHHHHcCCEEEEC
Confidence 223334556555443
No 412
>PRK14851 hypothetical protein; Provisional
Probab=92.92 E-value=0.23 Score=52.34 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=30.3
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEEC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNS 188 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~ 188 (330)
..|++++|+|+|+|.+|..+|+.|...|. ++..+|
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD 74 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIAD 74 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEc
Confidence 45899999999999999999999998887 555555
No 413
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.87 E-value=0.17 Score=50.94 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=65.8
Q ss_pred ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCCCCC--CCHHHHhhcCCEEEEeccCC
Q 020160 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTYPFY--PDVCELAANSDVLIICCALT 220 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~~~--~~l~ell~~aDvV~l~~P~t 220 (330)
+..+.++++.|||.|.+|.++|+.|+..|++|.++++..... .+.... ... +....+|+|+++.-..
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR 89 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence 445789999999999999999999999999999998654211 121111 111 1345689888875333
Q ss_pred cccc----------ccccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 020160 221 DQTH----------HLINK-QVL-LALGK----KGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 221 ~~t~----------~li~~-~~l-~~mk~----gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
+.+. .+++. +.+ ..+.+ ..+-|--+.|+.--..-+...|+.
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 3222 12222 222 33322 234454456777766667777765
No 414
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=92.82 E-value=0.81 Score=43.14 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=69.3
Q ss_pred CCceEEEEe-cChHHHHHHHHHHhCCCEEE-EECCC--CCCCCCCCCCCCHHHHhhc--CCEEEEeccCCccccccccHH
Q 020160 157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVS-YNSRN--KKPSVTYPFYPDVCELAAN--SDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~-~~~~~--~~~~~~~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~ 230 (330)
.+.+|.|.| -|.+|+.+-+.+.+.|.++. .+++. .....+...+.+++|+-.. .|+.++++|.. .+...+. +
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~-e 82 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIF-E 82 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHH-H
Confidence 356789999 59999999999999998743 34554 2333466678899999887 79999999954 3333332 2
Q ss_pred HHhcCCC-CcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160 231 VLLALGK-KGVIINVGRGAIIDEKEMVGCLLRGEIG 265 (330)
Q Consensus 231 ~l~~mk~-gailIN~~rg~~vd~~aL~~aL~~g~i~ 265 (330)
..+ ..- .++++.-+-+. -++++|.+..++..++
T Consensus 83 ~~~-~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir 116 (286)
T TIGR01019 83 AID-AGIELIVCITEGIPV-HDMLKVKRYMEESGTR 116 (286)
T ss_pred HHH-CCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence 222 232 33444433333 3667888888877654
No 415
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.79 E-value=0.18 Score=41.92 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=28.3
Q ss_pred eEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK 191 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~ 191 (330)
+|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 688887653
No 416
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.76 E-value=0.31 Score=46.74 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=58.2
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCC-------CEEEEECCCCCC--CCC----CC-----------CCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFG-------CCVSYNSRNKKP--SVT----YP-----------FYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G-------~~V~~~~~~~~~--~~~----~~-----------~~~~l~ell~~aDvV 213 (330)
.+|+|+|. |.+|+.++..|...+ .+|..+|+.+.. ..+ .. ...++.+.++.||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 37999999 999999999998644 478888875422 111 00 124566889999999
Q ss_pred EEeccCCc---ccc-ccc--cH-------HHHhcC-CCCcEEEEcCCCcccCHHH
Q 020160 214 IICCALTD---QTH-HLI--NK-------QVLLAL-GKKGVIINVGRGAIIDEKE 254 (330)
Q Consensus 214 ~l~~P~t~---~t~-~li--~~-------~~l~~m-k~gailIN~~rg~~vd~~a 254 (330)
+.+.-... .++ .++ |. ..+... +|++++|.++ ..+|.-.
T Consensus 83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (325)
T cd01336 83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA 135 (325)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence 88754321 121 111 11 123333 5788888886 4454433
No 417
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=92.75 E-value=0.78 Score=45.22 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=47.1
Q ss_pred ccCCceEEEEec-----C---hHHHHHHHHHHhCCCEEEEECCCCCC---C-----------CC--CCCCCCHHHHhhcC
Q 020160 155 KLGGKRVGIVGL-----G---SIGSEVAKRLEAFGCCVSYNSRNKKP---S-----------VT--YPFYPDVCELAANS 210 (330)
Q Consensus 155 ~l~g~~vgIiG~-----G---~IG~~~A~~l~~~G~~V~~~~~~~~~---~-----------~~--~~~~~~l~ell~~a 210 (330)
.+.|+||+|+|- | ++.++++..+..+|++|.+..+..-. . .+ +....++++.++++
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 56789999999999999888765311 0 01 12357899999999
Q ss_pred CEEEEe
Q 020160 211 DVLIIC 216 (330)
Q Consensus 211 DvV~l~ 216 (330)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999875
No 418
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=92.72 E-value=0.62 Score=38.88 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=63.3
Q ss_pred HHHHHHHhCCCEEEEECCCCCCC---------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEE
Q 020160 172 EVAKRLEAFGCCVSYNSRNKKPS---------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242 (330)
Q Consensus 172 ~~A~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI 242 (330)
..+++|...|++|++=.-..... .|+....+.++++++||+|+-.-|.+ .+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 56778888899998754332211 13334456679999999998765543 56778899999999
Q ss_pred EcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN 274 (330)
Q Consensus 243 N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 274 (330)
-...-. ....+++.|.++++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 765544 588899999999998787776544
No 419
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.70 E-value=0.22 Score=47.41 Aligned_cols=85 Identities=22% Similarity=0.237 Sum_probs=56.1
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCC-HHHHhhcCCEEEEeccCCccccccccHH
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPD-VCELAANSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~-l~ell~~aDvV~l~~P~t~~t~~li~~~ 230 (330)
.|.++.|.|.|.+|...++.++.+|.+|++.++++++. .+.....+ .++.-...|+++.+.... . .+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence 48899999999999999999999999998887765431 12211111 011112357666554332 1 12 46
Q ss_pred HHhcCCCCcEEEEcCC
Q 020160 231 VLLALGKKGVIINVGR 246 (330)
Q Consensus 231 ~l~~mk~gailIN~~r 246 (330)
.++.+++++.++.+|.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 7788999998888774
No 420
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.70 E-value=0.25 Score=48.48 Aligned_cols=39 Identities=31% Similarity=0.309 Sum_probs=34.6
Q ss_pred ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
++...++++.|+|. |.||+.+++.|...|++|....|+.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 45678999999995 9999999999999999999888765
No 421
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.67 E-value=0.56 Score=44.73 Aligned_cols=83 Identities=24% Similarity=0.235 Sum_probs=52.8
Q ss_pred eEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-------------C-----------------CC------CCCCC
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-------------V-----------------TY------PFYPD 202 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-------------~-----------------~~------~~~~~ 202 (330)
+|.|||+|.+|.++++.|...|. ++..+|...-.. . .. ....+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 58999999999999999998887 567766432110 0 00 00111
Q ss_pred ---HHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160 203 ---VCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 203 ---l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r 246 (330)
..+++++.|+|+.++ .+.+.+..+++-.... +--+|+.+.
T Consensus 81 ~~~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~~---~ip~I~~gt 123 (312)
T cd01489 81 PDFNVEFFKQFDLVFNAL-DNLAARRHVNKMCLAA---DVPLIESGT 123 (312)
T ss_pred ccchHHHHhcCCEEEECC-CCHHHHHHHHHHHHHC---CCCEEEEec
Confidence 236788899888877 4556676666554432 344666544
No 422
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.67 E-value=0.47 Score=45.91 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=50.7
Q ss_pred CCceEEEEec-ChHHHHHHHHHHh-CCCE---EEEEC-C-CCCCCCCC-----CC-CCCHHHHhhcCCEEEEeccCCccc
Q 020160 157 GGKRVGIVGL-GSIGSEVAKRLEA-FGCC---VSYNS-R-NKKPSVTY-----PF-YPDVCELAANSDVLIICCALTDQT 223 (330)
Q Consensus 157 ~g~~vgIiG~-G~IG~~~A~~l~~-~G~~---V~~~~-~-~~~~~~~~-----~~-~~~l~ell~~aDvV~l~~P~t~~t 223 (330)
++.+|||||. |..|+.+.+.|.. -.+. +..+. . +..+.... .. ..+.++ +.++|++++++|.. ..
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence 4579999996 9999999999983 5665 43332 2 21111111 00 113333 48899999999865 22
Q ss_pred cccccHHHHhc-CCCCcEEEEcC
Q 020160 224 HHLINKQVLLA-LGKKGVIINVG 245 (330)
Q Consensus 224 ~~li~~~~l~~-mk~gailIN~~ 245 (330)
+ +.... .+.|+.+|+.|
T Consensus 82 ~-----~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 82 R-----QFVNQAVSSGAIVIDNT 99 (347)
T ss_pred H-----HHHHHHHHCCCEEEECc
Confidence 2 22222 35688999987
No 423
>PRK13529 malate dehydrogenase; Provisional
Probab=92.56 E-value=3.4 Score=42.41 Aligned_cols=212 Identities=16% Similarity=0.163 Sum_probs=127.8
Q ss_pred cCCCcceeEEcCCCCCC-CChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccc
Q 020160 77 LLPEVRLVVATSAGLNH-IDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSK 155 (330)
Q Consensus 77 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~ 155 (330)
.+|+. +|+.---+..+ +.+..--+..|.+.|.-= .-+|-.+++-+|+.+|-. |+.
T Consensus 237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi---QGTaaV~LAgll~A~r~~--------------------g~~ 292 (563)
T PRK13529 237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI---QGTGAVTLAGLLAALKIT--------------------GEP 292 (563)
T ss_pred hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc---chHHHHHHHHHHHHHHHh--------------------CCC
Confidence 35654 55555444433 333333345799988643 335666788888777742 456
Q ss_pred cCCceEEEEecChHHHHHHHHHHh----CCC-------EEEEECCCCC-----CCC---------CCC---------CCC
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEA----FGC-------CVSYNSRNKK-----PSV---------TYP---------FYP 201 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~----~G~-------~V~~~~~~~~-----~~~---------~~~---------~~~ 201 (330)
+...++.|.|.|..|-.+|+.+.. .|. ++..+|+..- ... ... ...
T Consensus 293 l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~ 372 (563)
T PRK13529 293 LSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVI 372 (563)
T ss_pred hhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCC
Confidence 888999999999999999999875 587 6777776531 000 000 124
Q ss_pred CHHHHhhcC--CEEEEeccCCccccccccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCC-ceEEEEecCC
Q 020160 202 DVCELAANS--DVLIICCALTDQTHHLINKQVLLALGK---KGVIINVGRGAIIDEKEMVGCLL--RGE-IGGAGLDVFE 273 (330)
Q Consensus 202 ~l~ell~~a--DvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~~rg~~vd~~aL~~aL~--~g~-i~ga~lDV~~ 273 (330)
+|.|+++.. |+++=+- ..-+.|+++.++.|.+ .+++.=.|.-.-.-|-.-.+|.+ +|+ |.+.|. .
T Consensus 373 ~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs---p 445 (563)
T PRK13529 373 SLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS---P 445 (563)
T ss_pred CHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC---C
Confidence 789999888 8887532 2346899999999987 88999888877644444444444 354 433332 1
Q ss_pred CCCCCCc----ccccCCceEEcCCCCCCCH-----HHHHHHHHHHHHHHHHHHcC
Q 020160 274 NEPDVPE----QLFALDNVVLSPHSAVFTP-----ESFKDVCELAVANLEAFFSN 319 (330)
Q Consensus 274 ~EP~~~~----~L~~~~nvilTPHia~~t~-----~~~~~~~~~~~~nl~~~~~g 319 (330)
-.|.... .-=+..|+.+=|=++-..- .--+.|...+++-|-++..-
T Consensus 446 f~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~ 500 (563)
T PRK13529 446 FAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPL 500 (563)
T ss_pred CCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCcc
Confidence 1111100 1224567888887654321 11245555556656555543
No 424
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.50 E-value=0.17 Score=51.97 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=32.3
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
-.|+++.|.|. |.||+.++++|...|++|.+..|+..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999995 99999999999999999998877643
No 425
>PRK05884 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.2 Score=44.76 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=28.6
Q ss_pred eEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 160 RVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 160 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
++.|.|. |.||+++|+.+...|++|+..+|+.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~ 35 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD 35 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5788886 89999999999999999998887643
No 426
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.38 E-value=0.11 Score=48.48 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=32.0
Q ss_pred CceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP 193 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~ 193 (330)
++++.|+|.|..+++++..|...|+ +|.+++|+.++
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~ 158 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKT 158 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence 4689999999999999999999998 59999998653
No 427
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=92.37 E-value=0.38 Score=52.64 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=53.6
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC--------------------------CCC--------CCC
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS--------------------------VTY--------PFY 200 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------------------~~~--------~~~ 200 (330)
.-.|++|+|||-|.-|-+.|..|...|+.|++|.|+.+.. .+. ...
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence 3579999999999999999999999999999999876531 011 123
Q ss_pred CCHHHHhhcCCEEEEeccCC
Q 020160 201 PDVCELAANSDVLIICCALT 220 (330)
Q Consensus 201 ~~l~ell~~aDvV~l~~P~t 220 (330)
.++++|.+.-|-|+++.-.|
T Consensus 1862 vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred ccHHHHhhccCeEEEEeCCC
Confidence 68999999999999987544
No 428
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.35 E-value=0.43 Score=44.56 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=33.4
Q ss_pred cccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 154 SKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
..+.||++-|.| .|.||..+|+++...|++|+..+++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467899999999 58899999999999999998887764
No 429
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.33 E-value=0.48 Score=44.63 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=44.4
Q ss_pred CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC---------C-----------CCCCCCCHHHHhhcCCEEEE
Q 020160 157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS---------V-----------TYPFYPDVCELAANSDVLII 215 (330)
Q Consensus 157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~-----------~~~~~~~l~ell~~aDvV~l 215 (330)
.||++.|.| .|-||+.++++|...|++|.+..++.... . ......+++++++..|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 478999999 59999999999999999997765543210 0 01112346677888998877
Q ss_pred ecc
Q 020160 216 CCA 218 (330)
Q Consensus 216 ~~P 218 (330)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 664
No 430
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.31 E-value=0.26 Score=47.20 Aligned_cols=66 Identities=23% Similarity=0.147 Sum_probs=47.1
Q ss_pred ccccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCC-------CCCCCHHHHhhcCCEEE
Q 020160 153 GSKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTY-------PFYPDVCELAANSDVLI 214 (330)
Q Consensus 153 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~-------~~~~~l~ell~~aDvV~ 214 (330)
+++.+++++.|.| .|-||+.+++.|...|++|++.++..... ... ....++++++++.|+|+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 5678899999999 69999999999999999998876653211 001 11123556677889776
Q ss_pred Eecc
Q 020160 215 ICCA 218 (330)
Q Consensus 215 l~~P 218 (330)
-+..
T Consensus 85 h~A~ 88 (353)
T PLN02896 85 HVAA 88 (353)
T ss_pred ECCc
Confidence 6553
No 431
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.29 E-value=0.1 Score=46.80 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=46.0
Q ss_pred EEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-------CCC-------CCCCCHHHHhhcCCEEEEeccCC
Q 020160 161 VGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTY-------PFYPDVCELAANSDVLIICCALT 220 (330)
Q Consensus 161 vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~-------~~~~~l~ell~~aDvV~l~~P~t 220 (330)
|.|+|. |.+|+.+++.|..-|++|.+..|..... .+. ...+++.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678995 9999999999999999999887765321 121 11245677899999999999854
No 432
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=92.29 E-value=0.36 Score=46.57 Aligned_cols=83 Identities=11% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCceEEEEec-ChHHHHHHHHHHh--CC-CEEEEECCCCC--CCC---CCC-CCCCHHHH-hhcCCEEEEeccCCccccc
Q 020160 157 GGKRVGIVGL-GSIGSEVAKRLEA--FG-CCVSYNSRNKK--PSV---TYP-FYPDVCEL-AANSDVLIICCALTDQTHH 225 (330)
Q Consensus 157 ~g~~vgIiG~-G~IG~~~A~~l~~--~G-~~V~~~~~~~~--~~~---~~~-~~~~l~el-l~~aDvV~l~~P~t~~t~~ 225 (330)
.+.+|+|||. |-+|+++.+.|.. +- .++........ +.. +.. ...++++. +.++|++++++|....
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s--- 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREAS--- 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHH---
Confidence 4679999996 9999999999987 43 35554432221 111 100 11244444 3789999999986522
Q ss_pred cccHHHHhc-CCCCcEEEEcC
Q 020160 226 LINKQVLLA-LGKKGVIINVG 245 (330)
Q Consensus 226 li~~~~l~~-mk~gailIN~~ 245 (330)
.+.... .+.|+.+|+.|
T Consensus 80 ---~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 80 ---AAYAEEATNAGCLVIDSS 97 (336)
T ss_pred ---HHHHHHHHHCCCEEEECC
Confidence 233332 25688999988
No 433
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.27 E-value=0.26 Score=48.50 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=28.9
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~ 190 (330)
...+-|+|+|.+|+.+++.|+..|.++.+.+.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence 567999999999999999999999988777654
No 434
>PRK12937 short chain dehydrogenase; Provisional
Probab=92.23 E-value=0.5 Score=42.19 Aligned_cols=35 Identities=34% Similarity=0.444 Sum_probs=30.4
Q ss_pred cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCC
Q 020160 156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRN 190 (330)
Q Consensus 156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~ 190 (330)
+.|+++.|.| .|.||+.+|+.+...|++|+...++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 5789999999 5999999999999999998766543
No 435
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.23 E-value=0.2 Score=54.94 Aligned_cols=90 Identities=13% Similarity=0.203 Sum_probs=62.5
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEE-------------------------EEE--CCC-----CCCCCCC------
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCV-------------------------SYN--SRN-----KKPSVTY------ 197 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V-------------------------~~~--~~~-----~~~~~~~------ 197 (330)
+.-.++.|+|.|++|+..++.+..+|.+. +++ .+. ..+...+
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 44578999999999999999999886541 100 000 0000000
Q ss_pred ----CCCCC-HHHHhhcCCEEEEeccCCccccccccHH-HHhcCCCCc----EEEEcC
Q 020160 198 ----PFYPD-VCELAANSDVLIICCALTDQTHHLINKQ-VLLALGKKG----VIINVG 245 (330)
Q Consensus 198 ----~~~~~-l~ell~~aDvV~l~~P~t~~t~~li~~~-~l~~mk~ga----ilIN~~ 245 (330)
.+.+. +++.+..+|+++.++-..+.+..++..+ ..+.||+|. ++++++
T Consensus 281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 01112 3468899999999998888888899888 777899998 888875
No 436
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.21 E-value=0.54 Score=44.43 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=55.2
Q ss_pred eEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------CC-----------------CC------CCC-C
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------SV-----------------TY------PFY-P 201 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~-----------------~~------~~~-~ 201 (330)
+|.|||+|.+|.++++.|...|. ++...|...-. .. .. ... .
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 58999999999999999998887 56666542110 00 00 001 1
Q ss_pred CHHHHhhcCCEEEEeccCCccccccccHHHHhcC-----CCCcEEEEcCCCc
Q 020160 202 DVCELAANSDVLIICCALTDQTHHLINKQVLLAL-----GKKGVIINVGRGA 248 (330)
Q Consensus 202 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~m-----k~gailIN~~rg~ 248 (330)
.-.+++++.|+|+.++- +.++|..++....... +.+.-+|..|..+
T Consensus 81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G 131 (291)
T cd01488 81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG 131 (291)
T ss_pred hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence 22467889998888764 4567777776555443 2234567665533
No 437
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.06 E-value=0.31 Score=45.60 Aligned_cols=60 Identities=22% Similarity=0.149 Sum_probs=44.3
Q ss_pred ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC-------CCCCHHHHhhcCCEEEEecc
Q 020160 159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP-------FYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~ell~~aDvV~l~~P 218 (330)
+++.|.| .|-||+.+++.|...|++|.+.+|++.... +.. ...++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4788998 599999999999999999999888654321 111 12345677888998887664
No 438
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.06 E-value=0.37 Score=46.24 Aligned_cols=36 Identities=31% Similarity=0.206 Sum_probs=32.1
Q ss_pred cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
+++++|.|.| .|-||+.+++.|...|.+|+++++..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5679999999 59999999999999999999998743
No 439
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.05 E-value=0.37 Score=46.83 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=43.5
Q ss_pred CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC-------CCCCHHHHhhcCCEEEEec
Q 020160 157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP-------FYPDVCELAANSDVLIICC 217 (330)
Q Consensus 157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~ell~~aDvV~l~~ 217 (330)
.+|+|.|.|. |-||+.+++.|...|++|++.+|...... ... ...++..++.++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 5789999997 99999999999999999999887532110 001 0122344567899887655
No 440
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.97 E-value=0.3 Score=46.84 Aligned_cols=29 Identities=38% Similarity=0.462 Sum_probs=23.4
Q ss_pred eEEEEecChHHHHHHHHHHhCC----CEEEEEC
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFG----CCVSYNS 188 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~ 188 (330)
+|||+|+|+||+.+.+.+...+ ++|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn 33 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN 33 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 5899999999999999987653 6776543
No 441
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=91.93 E-value=0.78 Score=46.79 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=64.1
Q ss_pred ccCCceEEEEec---ChHHHHHHHHHHhCC-CEEEEECCCCCC-C---------CC--CCCCCCHHHHhhcCCEE--EE-
Q 020160 155 KLGGKRVGIVGL---GSIGSEVAKRLEAFG-CCVSYNSRNKKP-S---------VT--YPFYPDVCELAANSDVL--II- 215 (330)
Q Consensus 155 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G-~~V~~~~~~~~~-~---------~~--~~~~~~l~ell~~aDvV--~l- 215 (330)
.+.|.+|++||= |++..+++..+..|| ++|.+..+..-. . .+ +....++++.++++|+. +.
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 467999999997 699999999999998 999877664321 1 02 22357899999999952 22
Q ss_pred ------eccCC-----cc--ccccccHHHHhcCCCCcEEEEcC
Q 020160 216 ------CCALT-----DQ--THHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 216 ------~~P~t-----~~--t~~li~~~~l~~mk~gailIN~~ 245 (330)
..... .. -...++++.++.+|++++|.-+.
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 12111 00 13456888999999999988874
No 442
>PLN02427 UDP-apiose/xylose synthase
Probab=91.93 E-value=0.36 Score=46.86 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=46.6
Q ss_pred ccccCCceEEEEe-cChHHHHHHHHHHhC-CCEEEEECCCCCCC-----C-------CC-------CCCCCHHHHhhcCC
Q 020160 153 GSKLGGKRVGIVG-LGSIGSEVAKRLEAF-GCCVSYNSRNKKPS-----V-------TY-------PFYPDVCELAANSD 211 (330)
Q Consensus 153 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~-----~-------~~-------~~~~~l~ell~~aD 211 (330)
|+.++.++|.|.| .|-||+.+++.|... |++|++.+++.... . .. ....++.++++++|
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 6667888999999 599999999999987 58999888654210 0 01 11224566788899
Q ss_pred EEEEec
Q 020160 212 VLIICC 217 (330)
Q Consensus 212 vV~l~~ 217 (330)
+|+-+.
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 876554
No 443
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=91.84 E-value=0.36 Score=46.79 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=41.3
Q ss_pred eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----C--C-CCCCC---HHHHhh--cCCEEEEe
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----T--Y-PFYPD---VCELAA--NSDVLIIC 216 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~--~-~~~~~---l~ell~--~aDvV~l~ 216 (330)
+|+|||-|..|..+++.++.+|++|++++.++.... . + ....+ +.++++ ++|.|+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 689999999999999999999999999988764321 0 0 01223 445555 68888643
No 444
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=91.83 E-value=0.21 Score=49.38 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.1
Q ss_pred ceEEEEecChHHHHHHHHHHh-CCCEEEEEC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA-FGCCVSYNS 188 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~ 188 (330)
.+|||.|||+||+.+++.+.. ++++|++.+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN 116 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN 116 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence 499999999999999999875 789988743
No 445
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=91.81 E-value=1.1 Score=41.50 Aligned_cols=122 Identities=21% Similarity=0.201 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 020160 117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAF----GC-------CVS 185 (330)
Q Consensus 117 vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~ 185 (330)
+|=.+++-+|+.+|-. |+.|...++.|+|.|.-|-.+|+.+... |. +++
T Consensus 4 TaaV~lAgll~Al~~~--------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~ 63 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT--------------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW 63 (255)
T ss_dssp HHHHHHHHHHHHHHHH--------------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred hHHHHHHHHHHHHHHh--------------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence 4555677777666652 4568899999999999999999999877 87 477
Q ss_pred EECCCC----CCCC-------------CCCCCCCHHHHhhcC--CEEEEeccCCccccccccHHHHhcCCC---CcEEEE
Q 020160 186 YNSRNK----KPSV-------------TYPFYPDVCELAANS--DVLIICCALTDQTHHLINKQVLLALGK---KGVIIN 243 (330)
Q Consensus 186 ~~~~~~----~~~~-------------~~~~~~~l~ell~~a--DvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN 243 (330)
.+|+.. .... ......+|.|.++.+ |+++=.- ...+.|+++.++.|.+ .+++.=
T Consensus 64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEE
Confidence 776642 1100 111124899999998 9887642 2567899999999987 889999
Q ss_pred cCCCcccCHHHHHHHHHcC
Q 020160 244 VGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 244 ~~rg~~vd~~aL~~aL~~g 262 (330)
.|...---|-.-.++.+-+
T Consensus 140 LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 140 LSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp -SSSCGGSSS-HHHHHHTT
T ss_pred CCCCCCcccCCHHHHHhhC
Confidence 9987764444444444443
No 446
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=91.77 E-value=1.5 Score=42.30 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=45.5
Q ss_pred c-CCceEEEEecC-------hHHHHHHHHHHhCCCEEEEECC-CCCCC--------------CC--CCCCCCHHHHhhcC
Q 020160 156 L-GGKRVGIVGLG-------SIGSEVAKRLEAFGCCVSYNSR-NKKPS--------------VT--YPFYPDVCELAANS 210 (330)
Q Consensus 156 l-~g~~vgIiG~G-------~IG~~~A~~l~~~G~~V~~~~~-~~~~~--------------~~--~~~~~~l~ell~~a 210 (330)
+ .|+||+|+|.| ++.++++..+..+|++|.+..+ ..-.. .+ +....++++.++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68999887654 7888999999999999988877 32110 01 12346889999999
Q ss_pred CEEEEec
Q 020160 211 DVLIICC 217 (330)
Q Consensus 211 DvV~l~~ 217 (330)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9997643
No 447
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.75 E-value=0.45 Score=45.37 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=44.5
Q ss_pred ceEEEEecChHHHHHHHHHHh--CCCEEEEECCCCCCCCCC---------------CCCC-CHHHHhhcCCEEEEec--c
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA--FGCCVSYNSRNKKPSVTY---------------PFYP-DVCELAANSDVLIICC--A 218 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~--~G~~V~~~~~~~~~~~~~---------------~~~~-~l~ell~~aDvV~l~~--P 218 (330)
++|+|||.|.||+++|-+|.. ++-++..+|...+...+. .... .-.+.++.||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 589999999999999999854 444788888874332110 0011 1146789999999997 6
Q ss_pred CCcc
Q 020160 219 LTDQ 222 (330)
Q Consensus 219 ~t~~ 222 (330)
..|.
T Consensus 81 rKpG 84 (313)
T COG0039 81 RKPG 84 (313)
T ss_pred CCCC
Confidence 5554
No 448
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.75 E-value=0.51 Score=46.40 Aligned_cols=62 Identities=24% Similarity=0.169 Sum_probs=50.4
Q ss_pred cCCceEEEEecC----------hHHHHHHHHHHhCCCEEEEECCCCCCCC--CCCCCCCHHHHhhcCCEEEEec
Q 020160 156 LGGKRVGIVGLG----------SIGSEVAKRLEAFGCCVSYNSRNKKPSV--TYPFYPDVCELAANSDVLIICC 217 (330)
Q Consensus 156 l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~~ 217 (330)
..|++|+|+|+. .-...+++.|...|.+|.+||+...... +..+..++.+.+++||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcC
Confidence 468999999993 4577999999999999999999754322 3445679999999999999864
No 449
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=91.72 E-value=0.23 Score=44.08 Aligned_cols=37 Identities=32% Similarity=0.536 Sum_probs=32.1
Q ss_pred cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
..|++++|.|||+|.+|.++|+.|...|. +++.+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35889999999999999999999999998 47777654
No 450
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.72 E-value=0.41 Score=44.04 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=42.4
Q ss_pred eEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcC--CEEEEeccC
Q 020160 160 RVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANS--DVLIICCAL 219 (330)
Q Consensus 160 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~a--DvV~l~~P~ 219 (330)
+|.|+|. |.||+.+++.|...|++|++.+|... ......++.+++..+ |+|+.++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCcc
Confidence 4788995 99999999999999999999887522 122234566777765 998876643
No 451
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=91.64 E-value=0.61 Score=44.20 Aligned_cols=85 Identities=28% Similarity=0.338 Sum_probs=53.5
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC---CCCC---HHHHhhcCCEEEEeccCCccccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP---FYPD---VCELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~---~~~~---l~ell~~aDvV~l~~P~t~~t~~ 225 (330)
.|.++.|.|.|.+|+.+++.++.+|++|++.+++.+... +.. ...+ ..+.-...|+++-+.+...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence 478999999999999999999999999988877643210 110 0011 1112244677766655321
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 020160 226 LINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 226 li~~~~l~~mk~gailIN~~r 246 (330)
.-.+.++.+++++.++++|.
T Consensus 245 -~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 245 -DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -hHHHHHHHhcCCCEEEEEec
Confidence 11445666777777777654
No 452
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=91.58 E-value=0.84 Score=46.62 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=94.7
Q ss_pred ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160 153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231 (330)
Q Consensus 153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~ 231 (330)
+..+.|+...|+|-.. +|..++..|+.....|+.+-.. ..++.|.+.++|+|+.++--. +++-.
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG~P----efVKg-- 221 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIGQP----EFVKG-- 221 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcCCc----ceeec--
Confidence 3458899999999765 5899999999999999876332 247889999999999988432 23333
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHH
Q 020160 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVA 311 (330)
Q Consensus 232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ 311 (330)
+++|||+++|++|--.+-|..- ++|.- ..-||-..+-..- --.+||-=||.-+=+..-+.+..++
T Consensus 222 -dWiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Akev-------as~ITPVPGGVGPMTVAMLmqNtve 286 (935)
T KOG4230|consen 222 -DWIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAKEV-------ASFITPVPGGVGPMTVAMLMQNTVE 286 (935)
T ss_pred -ccccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhhhh-------hhccccCCCCcchHHHHHHHHHHHH
Confidence 4579999999998766554321 22322 4567765544211 1247898888877665555566666
Q ss_pred HHHHHHcCC
Q 020160 312 NLEAFFSNK 320 (330)
Q Consensus 312 nl~~~~~g~ 320 (330)
.-++++.+.
T Consensus 287 aAKR~r~es 295 (935)
T KOG4230|consen 287 AAKRQREES 295 (935)
T ss_pred HHHHHHHhc
Confidence 666666543
No 453
>PRK08324 short chain dehydrogenase; Validated
Probab=91.56 E-value=0.3 Score=51.45 Aligned_cols=39 Identities=38% Similarity=0.600 Sum_probs=34.7
Q ss_pred cccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 154 SKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
..+.|+++.|.| .|.||+.+|+.|...|++|+..+++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 457899999999 599999999999999999999888753
No 454
>PRK08374 homoserine dehydrogenase; Provisional
Probab=91.54 E-value=0.95 Score=43.61 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=63.6
Q ss_pred ceEEEEecChHHHHHHHHHHh--------CC--CEEEEE-CCCCCC--CCCC---------------C-C-------CCC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA--------FG--CCVSYN-SRNKKP--SVTY---------------P-F-------YPD 202 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~--------~G--~~V~~~-~~~~~~--~~~~---------------~-~-------~~~ 202 (330)
.+|+|+|+|++|+.+++.+.. +| .+|.+. +++... ..+. . + ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999998865 56 565543 332111 0010 0 0 116
Q ss_pred HHHHh--hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce-EEEEecCCCCCC
Q 020160 203 VCELA--ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII-DEKEMVGCLLRGEIG-GAGLDVFENEPD 277 (330)
Q Consensus 203 l~ell--~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v-d~~aL~~aL~~g~i~-ga~lDV~~~EP~ 277 (330)
+++++ ..+|+|+-+.+.. ... .-..+.++.|.-+|-...|.+- ..++|.+..+++... .+.-.|...-|.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi 156 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI 156 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence 67877 4799998776432 222 2233445667666655554332 455666555544332 233445555563
No 455
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.52 E-value=0.59 Score=45.48 Aligned_cols=35 Identities=43% Similarity=0.641 Sum_probs=31.3
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
.|.+|.|.|.|.+|...++.++.+|.+|++.+++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999988876543
No 456
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.50 E-value=0.76 Score=44.44 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=49.0
Q ss_pred ceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCC-C--CC----C----------C---C-CCCHHHHhhcCCEEEE
Q 020160 159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKP-S--VT----Y----------P---F-YPDVCELAANSDVLII 215 (330)
Q Consensus 159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-~--~~----~----------~---~-~~~l~ell~~aDvV~l 215 (330)
.+|+|+| .|.+|+.+++.|..+. +++.++.++... . .. . . . ..+.+ .+.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence 6899998 8999999999998764 477766222211 1 00 1 0 0 01333 3478999999
Q ss_pred eccCCccccccccHHHHhcC-CCCcEEEEcC
Q 020160 216 CCALTDQTHHLINKQVLLAL-GKKGVIINVG 245 (330)
Q Consensus 216 ~~P~t~~t~~li~~~~l~~m-k~gailIN~~ 245 (330)
++|.... .+..+.+ +.|..+|+.+
T Consensus 83 a~p~~~s------~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDVA------GEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhHH------HHHHHHHHHCCCEEEECC
Confidence 9987533 2222322 3567666665
No 457
>PRK06153 hypothetical protein; Provisional
Probab=91.20 E-value=0.25 Score=48.34 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=31.4
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECC
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSR 189 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~ 189 (330)
.|++++|+|||+|.+|..++..|...|. +++.+|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 6899999999999999999999999997 6777664
No 458
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.18 E-value=0.36 Score=47.93 Aligned_cols=105 Identities=16% Similarity=0.102 Sum_probs=63.8
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCC--CCHHHHhhcCCEEEEeccCCccccc--
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFY--PDVCELAANSDVLIICCALTDQTHH-- 225 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~--~~l~ell~~aDvV~l~~P~t~~t~~-- 225 (330)
+.++++.|+|+|..|.+.++.|+..|.+|.++|....... +.... ....+.++..|+|+. -|.-+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence 5688999999999999999999999999999996543210 11111 112244567886655 443332221
Q ss_pred ---------cccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160 226 ---------LINK-QVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 226 ---------li~~-~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
++.+ +.+.. ++...+-|--+.|+---..-|...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 23333 232234454456877777777777764
No 459
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=91.11 E-value=2 Score=35.90 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=72.2
Q ss_pred CCceEEEEecC----hHHHHHHHHHHhCCCEEEEECCCCC--CCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160 157 GGKRVGIVGLG----SIGSEVAKRLEAFGCCVSYNSRNKK--PSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ 230 (330)
Q Consensus 157 ~g~~vgIiG~G----~IG~~~A~~l~~~G~~V~~~~~~~~--~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 230 (330)
.-|||++||+. +-+..+++.|...|++|+-+++... ...|...+.||.|+-..-|+|-+--|.. ....+. .+
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e-~~~~i~-~e 92 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSE-AAPEVA-RE 92 (140)
T ss_pred hCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChh-hhHHHH-HH
Confidence 47899999985 5688999999999999998888444 4456667889999999999999887643 333332 33
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRG 262 (330)
Q Consensus 231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g 262 (330)
.++ +....++... ++.++++-..+-..|
T Consensus 93 al~-~~~kv~W~Ql---Gi~n~ea~~~~~~aG 120 (140)
T COG1832 93 ALE-KGAKVVWLQL---GIRNEEAAEKARDAG 120 (140)
T ss_pred HHh-hCCCeEEEec---CcCCHHHHHHHHHhC
Confidence 433 3466777765 567777655554444
No 460
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.03 E-value=0.66 Score=42.32 Aligned_cols=38 Identities=32% Similarity=0.331 Sum_probs=33.8
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
.++|+++.|.|. |.||+++|+.|...|++|+..+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468999999996 99999999999999999999888653
No 461
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.02 E-value=0.37 Score=42.65 Aligned_cols=38 Identities=37% Similarity=0.458 Sum_probs=33.7
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
.+.|+++.|.|. |.||+.+++.+...|++|+..+|++.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 477999999995 99999999999999999999988654
No 462
>PRK08264 short chain dehydrogenase; Validated
Probab=91.00 E-value=0.48 Score=42.22 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=33.9
Q ss_pred ccCCceEEEEe-cChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160 155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGC-CVSYNSRNKKP 193 (330)
Q Consensus 155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~-~V~~~~~~~~~ 193 (330)
++.++++.|.| -|.||+.+|+.|...|+ +|+..+|+.+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~ 43 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES 43 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence 46789999999 59999999999999999 99988886543
No 463
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.00 E-value=0.5 Score=45.64 Aligned_cols=85 Identities=28% Similarity=0.333 Sum_probs=57.4
Q ss_pred CceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------CCCC--C--C-C----HHHHh--hcCCEEEEeccC
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------TYPF--Y--P-D----VCELA--ANSDVLIICCAL 219 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~~~~--~--~-~----l~ell--~~aDvV~l~~P~ 219 (330)
+.++.|+|.|.||...++.++.+|. +|++.|+++.+.. +... . . . ..++. ..+|+++-|.-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3399999999999999999999997 6777787765321 1111 0 1 1 11222 24899998876
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCC
Q 020160 220 TDQTHHLINKQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 220 t~~t~~li~~~~l~~mk~gailIN~~rg 247 (330)
++.+ + .+.++..+++..++.+|-.
T Consensus 248 ~~~~--~--~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 SPPA--L--DQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CHHH--H--HHHHHHhcCCCEEEEEecc
Confidence 2221 2 4677888999888888754
No 464
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.99 E-value=0.35 Score=44.15 Aligned_cols=120 Identities=23% Similarity=0.234 Sum_probs=71.2
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------CCC-----------------C-----C
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------SVT-----------------Y-----P 198 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~-----~ 198 (330)
.|++++|.|+|+|.+|..+|+.|...|. +++.+|...-. ..+ . .
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 4789999999999999999999998887 67776643210 000 0 0
Q ss_pred -C--CCCHHHHh-hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCH-----------------HHHHH
Q 020160 199 -F--YPDVCELA-ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDE-----------------KEMVG 257 (330)
Q Consensus 199 -~--~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~-----------------~aL~~ 257 (330)
. ..+.++++ .+.|+|+.|+- +...+..+++...+ . .=.++...|-|+-.|. ..+.+
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD-~~~~k~~L~~~c~~-~-~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~ 164 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAID-SIRAKVALIAYCRK-R-KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK 164 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCC-CHHHHHHHHHHHHH-h-CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence 0 12345565 36899988864 33334333332222 1 1234545555554442 23667
Q ss_pred HHHcCCceEEEEecCCCCCC
Q 020160 258 CLLRGEIGGAGLDVFENEPD 277 (330)
Q Consensus 258 aL~~g~i~ga~lDV~~~EP~ 277 (330)
.|++..+..-.-=||..|+.
T Consensus 165 ~Lrk~~~~~~~~~v~S~E~~ 184 (231)
T cd00755 165 RLRKRGIFFGVPVVYSTEPP 184 (231)
T ss_pred HHHHcCCCCCeEEEeCCCCC
Confidence 78877775223446778864
No 465
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=90.94 E-value=0.54 Score=44.97 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=32.5
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
++||++.|.|. |-||+.++++|...|++|++.+++..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 46899999995 99999999999999999998887654
No 466
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.84 E-value=0.36 Score=48.09 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=63.5
Q ss_pred CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCCC--CCHHHHhhcCCEEEEeccCCcccc--
Q 020160 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPFY--PDVCELAANSDVLIICCALTDQTH-- 224 (330)
Q Consensus 158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~ell~~aDvV~l~~P~t~~t~-- 224 (330)
.-+++|+|+|.+|.++|+.|+..|++|.++|....... +.... ..-.+.+.++|+|+.. |.-+.+.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~s-p~i~~~~p~ 84 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIIS-PGLALDTPA 84 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEEC-CCCCCCCHH
Confidence 45899999999999999999999999999997543210 11111 1113456789988765 3222211
Q ss_pred ---------ccccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160 225 ---------HLINK-QVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLR 261 (330)
Q Consensus 225 ---------~li~~-~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~ 261 (330)
.++++ +.+.. ++...+-|--+.|+---..-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 12322 23322 333345555566887777777777765
No 467
>PRK05865 hypothetical protein; Provisional
Probab=90.80 E-value=0.96 Score=48.89 Aligned_cols=90 Identities=22% Similarity=0.303 Sum_probs=57.1
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--CC-------CCCCCHHHHhhcCCEEEEeccCCcccc--cc
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--TY-------PFYPDVCELAANSDVLIICCALTDQTH--HL 226 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~~-------~~~~~l~ell~~aDvV~l~~P~t~~t~--~l 226 (330)
|+|.|.|. |.||+.+++.|...|++|++.+++..... .. ....++.++++.+|+|+.+........ ++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv 80 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI 80 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence 47899995 99999999999999999998887642211 11 112345667889998887764322100 01
Q ss_pred c-cHHHHhcCCCC--cEEEEcCCCc
Q 020160 227 I-NKQVLLALGKK--GVIINVGRGA 248 (330)
Q Consensus 227 i-~~~~l~~mk~g--ailIN~~rg~ 248 (330)
. ....++.|+.. ..+|.+|...
T Consensus 81 ~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 81 DGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCcH
Confidence 1 12234445432 3688888765
No 468
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.79 E-value=0.33 Score=48.00 Aligned_cols=63 Identities=29% Similarity=0.375 Sum_probs=46.2
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--------CC-------CCCCCHHHHhhcCCEEEEec
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TY-------PFYPDVCELAANSDVLIICC 217 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~-------~~~~~l~ell~~aDvV~l~~ 217 (330)
+++||++.|.|. |.||+++|+.+...|++|+..+++..... .. ....++.+.+.+.|+++.+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 578999999996 89999999999999999998877543210 00 11123455678899998765
No 469
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=90.78 E-value=0.68 Score=44.27 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=27.1
Q ss_pred ceEEEEecChHHHHHHHHHHhCC--CEEEEECC
Q 020160 159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSR 189 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~ 189 (330)
.+|||=|||+||+.+++.+...+ |+|.+.+.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 47999999999999999998775 89987765
No 470
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.76 E-value=0.64 Score=43.99 Aligned_cols=85 Identities=28% Similarity=0.327 Sum_probs=52.8
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCCCC-----CCCCC---C--CCHH---HHhh--cCCEEEEeccCC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKKPS-----VTYPF---Y--PDVC---ELAA--NSDVLIICCALT 220 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~-----~~~~~---~--~~l~---ell~--~aDvV~l~~P~t 220 (330)
.|.++.|+|.|.+|...++.++.+|.+ |++.+++..+. .+... . .+.+ ++.. ..|+|+-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 389999999999999999999999998 88887654321 11110 0 0111 2222 367666554321
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCC
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~r 246 (330)
.. + ...++.+++++.++.+|.
T Consensus 243 -~~---~-~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 243 -AA---R-RLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -HH---H-HHHHHHhhcCCEEEEEcC
Confidence 11 1 344666777777777654
No 471
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.71 E-value=0.39 Score=43.86 Aligned_cols=64 Identities=28% Similarity=0.343 Sum_probs=46.0
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-----C--------CCCCCCHHHHhhcCCEEEEecc
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----T--------YPFYPDVCELAANSDVLIICCA 218 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~--------~~~~~~l~ell~~aDvV~l~~P 218 (330)
.+.|+++.|.|. |.||+++|+.+...|++|++.+++..... . .....++.+.+...|+++.+.-
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG 88 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG 88 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence 478999999996 78999999999999999988877651110 0 0011234456677899988763
No 472
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.70 E-value=0.96 Score=42.43 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=55.4
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC---CCC--CH-HHHhhcCCEEEEeccCCccccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP---FYP--DV-CELAANSDVLIICCALTDQTHH 225 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~---~~~--~l-~ell~~aDvV~l~~P~t~~t~~ 225 (330)
.|.++.|+|.|.+|+.+++.++.+|.+|++.+++.... .+.. ... +. .......|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 47899999999999999999999999998887665321 0110 000 11 111234787776653221
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 020160 226 LINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 226 li~~~~l~~mk~gailIN~~r 246 (330)
...+.+..|++++.+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 12456778888888888764
No 473
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=90.69 E-value=0.56 Score=44.36 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=47.2
Q ss_pred cCCceEEEEe---cChHHHHHHHHHHhCCCEEEEECCCCCCC----------CC-C-CCCCCHHHHhhcCCEEEE
Q 020160 156 LGGKRVGIVG---LGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VT-Y-PFYPDVCELAANSDVLII 215 (330)
Q Consensus 156 l~g~~vgIiG---~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~-~-~~~~~l~ell~~aDvV~l 215 (330)
+.|.+|+|+| .|+.-++.++.|+.||.+|..+.+..-.. .+ . ......+|.+.++|++.+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 7899999999 89999999999999999999988753222 01 1 224456669999999865
No 474
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.64 E-value=0.75 Score=42.01 Aligned_cols=86 Identities=26% Similarity=0.289 Sum_probs=56.6
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCCCC-----CC-CCC-CCCHHHH--hhcCCEEEEeccCCcccccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKKPS-----VT-YPF-YPDVCEL--AANSDVLIICCALTDQTHHL 226 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~-----~~-~~~-~~~l~el--l~~aDvV~l~~P~t~~t~~l 226 (330)
.|.++.|.|.|.+|..+++.++.+|.+ |++.+++.+.. .+ ... ....++. -...|+++.++.... .+
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~---~~ 173 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS---AL 173 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH---HH
Confidence 478999999999999999999999998 88877654321 11 000 0011111 124788876654321 12
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q 020160 227 INKQVLLALGKKGVIINVGRG 247 (330)
Q Consensus 227 i~~~~l~~mk~gailIN~~rg 247 (330)
...++.+++++.++++|-.
T Consensus 174 --~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 174 --ETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred --HHHHHHhcCCcEEEEEecc
Confidence 4567889999999988754
No 475
>PRK14852 hypothetical protein; Provisional
Probab=90.59 E-value=0.53 Score=51.17 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=87.4
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------CC-----------------CC------
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------SV-----------------TY------ 197 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~-----------------~~------ 197 (330)
.|++++|+|||+|.+|..+|+.|...|. ++...|...-. .. ..
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 5899999999999999999999999887 55555432110 00 00
Q ss_pred --CCCCCHHHHhhcCCEEEEeccCCc-cccccccHHHHhcCCCCcEEEEcCCC------------cccCHHHHHH-----
Q 020160 198 --PFYPDVCELAANSDVLIICCALTD-QTHHLINKQVLLALGKKGVIINVGRG------------AIIDEKEMVG----- 257 (330)
Q Consensus 198 --~~~~~l~ell~~aDvV~l~~P~t~-~t~~li~~~~l~~mk~gailIN~~rg------------~~vd~~aL~~----- 257 (330)
....+++++++.+|+|+-++-.-. +.+..+..... +.+.-+|..+-. +..+++- .+
T Consensus 409 ~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~---~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~~-f~~~~~~ 484 (989)
T PRK14852 409 EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL---ELGIPVITAGPLGYSCALLVFMPGGMNFDSY-FGIDDDT 484 (989)
T ss_pred cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH---HcCCCEEEeeccccCeeEEEEcCCCCCHHHh-CCCCCCC
Confidence 012356778889999988774311 22233333322 233444444321 1111100 00
Q ss_pred HHHcCCceEEEEecCCCCCCCCc-ccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 020160 258 CLLRGEIGGAGLDVFENEPDVPE-QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNK 320 (330)
Q Consensus 258 aL~~g~i~ga~lDV~~~EP~~~~-~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~ 320 (330)
-..+|-++ .++ ...|.+.. ..++..+|-+.=+.+-++.-+-.-.+-.+....++++-|+
T Consensus 485 p~~~~~~~-~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~ 544 (989)
T PRK14852 485 PPMEGYLR-FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHR 544 (989)
T ss_pred chHhhhhh-hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCC
Confidence 00011111 111 12222111 2335566766667777777777888888888899988887
No 476
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=90.59 E-value=0.83 Score=44.50 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=31.9
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
..++|+|||-|..|+.+++.++.+|++|+.++..+.
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~ 46 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 356899999999999999999999999988887654
No 477
>PRK06196 oxidoreductase; Provisional
Probab=90.59 E-value=0.4 Score=45.24 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=33.6
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
.+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468999999996 88999999999999999998888643
No 478
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.58 E-value=0.42 Score=42.78 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=33.1
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
+.|+++.|+|. |.||+.+|+.+...|++|+..+++.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67999999997 9999999999999999999888765
No 479
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.45 E-value=0.49 Score=42.88 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=34.3
Q ss_pred cccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 154 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
.++.||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 4578999999995 89999999999999999998887654
No 480
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=90.43 E-value=1.1 Score=41.09 Aligned_cols=81 Identities=25% Similarity=0.346 Sum_probs=56.5
Q ss_pred cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCC--C-CCCHHHHhh---cCCEEEEeccCC
Q 020160 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYP--F-YPDVCELAA---NSDVLIICCALT 220 (330)
Q Consensus 156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~--~-~~~l~ell~---~aDvV~l~~P~t 220 (330)
+.|++|.=||+| |..+++-+...|.+|++.|-+.+... +.. + ..+.+|+.. +.|+|+++
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cm---- 131 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCM---- 131 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEh----
Confidence 789999999988 46899999999999999998775411 111 2 346677765 68988763
Q ss_pred cccccccc-----HHHHhcCCCCcEEE
Q 020160 221 DQTHHLIN-----KQVLLALGKKGVII 242 (330)
Q Consensus 221 ~~t~~li~-----~~~l~~mk~gailI 242 (330)
+-.+|+=+ ....+.+|||++++
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILF 158 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEE
Confidence 22333333 34778899987655
No 481
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=90.35 E-value=0.31 Score=41.50 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=24.6
Q ss_pred eEEEEecChHHHHHHHHHH-hCCCEEEEECC
Q 020160 160 RVGIVGLGSIGSEVAKRLE-AFGCCVSYNSR 189 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~ 189 (330)
+|||-|||+||+.+++.+. .-.++|.+.+.
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd 32 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAIND 32 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEec
Confidence 7999999999999999987 44567766543
No 482
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=90.30 E-value=0.41 Score=47.39 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=64.4
Q ss_pred eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----------CCCCCC--CCHHHHhhcCCEEEEeccCCcccc--
Q 020160 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----------VTYPFY--PDVCELAANSDVLIICCALTDQTH-- 224 (330)
Q Consensus 160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------~~~~~~--~~l~ell~~aDvV~l~~P~t~~t~-- 224 (330)
++.|||+|.+|.++|+.|+..|++|.++|...... .+.... .+ .+.+..+|+|+..--..+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 47899999999999999999999999999754321 121111 12 345678998877532222111
Q ss_pred --------ccccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160 225 --------HLINK-QVL-LALGKKGVIINVGRGAIIDEKEMVGCLLRGE 263 (330)
Q Consensus 225 --------~li~~-~~l-~~mk~gailIN~~rg~~vd~~aL~~aL~~g~ 263 (330)
.++++ +.+ ..++...+-|--+.|+---..-+...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 12322 222 3334345556666788877777778887643
No 483
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.30 E-value=0.75 Score=44.11 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKK 192 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~ 192 (330)
.|++|.|.|.|.+|...++.++.+|.+ |++.+++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~ 212 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR 212 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 488999999999999999999999995 888876543
No 484
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=90.28 E-value=1.1 Score=42.23 Aligned_cols=62 Identities=23% Similarity=0.194 Sum_probs=44.9
Q ss_pred CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------------CCCCCCCHHHHhhcCCEEEE
Q 020160 157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------------TYPFYPDVCELAANSDVLII 215 (330)
Q Consensus 157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~ell~~aDvV~l 215 (330)
.|+++.|.| .|-||+.+++.|...|++|.+..|+..... ......+++++++.+|+|+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 589999999 699999999999999999986655432100 01112356777888998877
Q ss_pred ecc
Q 020160 216 CCA 218 (330)
Q Consensus 216 ~~P 218 (330)
+..
T Consensus 84 ~A~ 86 (322)
T PLN02986 84 TAS 86 (322)
T ss_pred eCC
Confidence 653
No 485
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.26 E-value=0.64 Score=44.69 Aligned_cols=85 Identities=29% Similarity=0.324 Sum_probs=55.9
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCC---CCC---HHHHhhcCCEEEEeccCCcccc
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPF---YPD---VCELAANSDVLIICCALTDQTH 224 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~---~~~---l~ell~~aDvV~l~~P~t~~t~ 224 (330)
.|.++.|.|.|.+|..+++.++..|.+|+..+++.+.. .+... ..+ +.++....|+++-++.....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 57899999999999999999999999987776544221 12210 111 22223346888776643211
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 020160 225 HLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 225 ~li~~~~l~~mk~gailIN~~r 246 (330)
+ ...++.+++++.++.+|.
T Consensus 258 -~--~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 -L--EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred -H--HHHHHHhccCCEEEEECC
Confidence 1 346677888888888874
No 486
>PRK07856 short chain dehydrogenase; Provisional
Probab=90.19 E-value=0.5 Score=42.68 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=33.0
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
++.||++.|.|. |.||+.+|+.|...|++|+..+++.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 467999999995 7899999999999999999888865
No 487
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=90.16 E-value=0.91 Score=43.74 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=47.7
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCC-CEEEEE-CCCCCC--CC----CC-----C-C-CC-----CH-HHHhhcCCEEEEe
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFG-CCVSYN-SRNKKP--SV----TY-----P-F-YP-----DV-CELAANSDVLIIC 216 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G-~~V~~~-~~~~~~--~~----~~-----~-~-~~-----~l-~ell~~aDvV~l~ 216 (330)
.+|+|+|. |.+|+.+++.+.... +++.+. +..... .. .. . . .. ++ .+.+.++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 47999995 999999999998755 677654 332211 00 00 0 0 01 11 2345889999999
Q ss_pred ccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160 217 CALTDQTHHLINKQVLLALGKKGVIINVG 245 (330)
Q Consensus 217 ~P~t~~t~~li~~~~l~~mk~gailIN~~ 245 (330)
+|..-... +. +.+ ++.|..+|+.|
T Consensus 81 ~p~~~s~~-~~--~~~--~~~G~~VIDls 104 (341)
T TIGR00978 81 LPSEVAEE-VE--PKL--AEAGKPVFSNA 104 (341)
T ss_pred CCHHHHHH-HH--HHH--HHCCCEEEECC
Confidence 98663322 21 222 23566666654
No 488
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.13 E-value=0.46 Score=44.35 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=31.3
Q ss_pred ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160 155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN 190 (330)
Q Consensus 155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~ 190 (330)
.|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999999999994 67776643
No 489
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.12 E-value=0.53 Score=42.58 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=33.7
Q ss_pred ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160 155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK 192 (330)
Q Consensus 155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~ 192 (330)
.+.||++.|.|. |.||+.+|++|...|++|+..+|+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999995 99999999999999999998888643
No 490
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=90.11 E-value=0.74 Score=42.22 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=41.2
Q ss_pred EEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCCC-----C--CCCHHHHhhcCCEEEEecc
Q 020160 162 GIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP-----F--YPDVCELAANSDVLIICCA 218 (330)
Q Consensus 162 gIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~-----~--~~~l~ell~~aDvV~l~~P 218 (330)
.|.| .|-||+.+++.|...|++|++.+|++....... . .....+.+.++|+|+.++.
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 4666 699999999999999999999998765432110 0 1244556788998887764
No 491
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=90.07 E-value=1.6 Score=42.84 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=56.7
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCCC-E------EEEE--CCCCCCCC---------------CCCCCCCHHHHhhcCCEE
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFGC-C------VSYN--SRNKKPSV---------------TYPFYPDVCELAANSDVL 213 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G~-~------V~~~--~~~~~~~~---------------~~~~~~~l~ell~~aDvV 213 (330)
-+|+|||. |.+|..+|-.+...|. . +..+ |...+... ......+-.+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 59999999 9999999999876554 2 3334 55544321 001012445789999999
Q ss_pred EEeccC--Cc-cccc-cc--c----HH---HHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 020160 214 IICCAL--TD-QTHH-LI--N----KQ---VLLA-LGKKGVIINVGRGAIIDEKEMVG 257 (330)
Q Consensus 214 ~l~~P~--t~-~t~~-li--~----~~---~l~~-mk~gailIN~~rg~~vd~~aL~~ 257 (330)
++..-. .+ ++|. ++ | ++ .+.. -+|.+++|.++ ..+|.-+.+-
T Consensus 125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~ 180 (387)
T TIGR01757 125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIA 180 (387)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHH
Confidence 997533 22 1221 11 1 11 1222 44788888886 5555555443
No 492
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.07 E-value=0.32 Score=46.23 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=34.2
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP 193 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~ 193 (330)
.|.|++|.|+|.+|.++++-++++|. ++++.|.++++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence 58999999999999999999999998 89999988764
No 493
>PLN02206 UDP-glucuronate decarboxylase
Probab=90.05 E-value=0.75 Score=45.98 Aligned_cols=69 Identities=26% Similarity=0.250 Sum_probs=47.9
Q ss_pred CCCCccccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCCC--CCCCHHHHhhcCCEEEE
Q 020160 149 EFPLGSKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTYP--FYPDVCELAANSDVLII 215 (330)
Q Consensus 149 ~~~~~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~--~~~~l~ell~~aDvV~l 215 (330)
..++|..-++++|.|.| .|-||+.+++.|...|.+|++.++..... .... ..+-++..+.++|+|+-
T Consensus 110 ~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViH 189 (442)
T PLN02206 110 KIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYH 189 (442)
T ss_pred cCccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEE
Confidence 35677777889999999 59999999999999999999887542110 0011 11223445678998766
Q ss_pred ec
Q 020160 216 CC 217 (330)
Q Consensus 216 ~~ 217 (330)
+.
T Consensus 190 lA 191 (442)
T PLN02206 190 LA 191 (442)
T ss_pred ee
Confidence 54
No 494
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.05 E-value=0.78 Score=44.27 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=54.1
Q ss_pred CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC---C--CCHHH-Hh---h-cCCEEEEeccCC
Q 020160 157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF---Y--PDVCE-LA---A-NSDVLIICCALT 220 (330)
Q Consensus 157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~---~--~~l~e-ll---~-~aDvV~l~~P~t 220 (330)
.|.+|.|.|.|.+|...++.++..|+ +|++.++++.+. .+... . .++.+ +. . ..|+|+-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 47899999999999999999999999 588887665331 12110 1 11111 11 1 367777665322
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCC
Q 020160 221 DQTHHLINKQVLLALGKKGVIINVGR 246 (330)
Q Consensus 221 ~~t~~li~~~~l~~mk~gailIN~~r 246 (330)
.+ + ...++.+++++.++.++-
T Consensus 271 -~~--~--~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 -PA--L--ETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -HH--H--HHHHHHHhcCCEEEEEcc
Confidence 11 1 345667788888887764
No 495
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.04 E-value=1.1 Score=43.32 Aligned_cols=80 Identities=10% Similarity=0.166 Sum_probs=47.9
Q ss_pred ceEEEEec-ChHHHHHHHHHHhCCC---EEEEECCCCCCC----C-CCC-CCC--CHHHHhhcCCEEEEeccCCcccccc
Q 020160 159 KRVGIVGL-GSIGSEVAKRLEAFGC---CVSYNSRNKKPS----V-TYP-FYP--DVCELAANSDVLIICCALTDQTHHL 226 (330)
Q Consensus 159 ~~vgIiG~-G~IG~~~A~~l~~~G~---~V~~~~~~~~~~----~-~~~-~~~--~l~ell~~aDvV~l~~P~t~~t~~l 226 (330)
.+|+|+|. |.+|+++.+.|...++ ++.+........ . +.. ... +..+ ++++|++++++|.. ....
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~- 81 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRS- 81 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHH-
Confidence 58999995 9999999999995443 333332211111 0 100 011 2223 58999999999943 2222
Q ss_pred ccHHHHhcC-CCCcEEEEcC
Q 020160 227 INKQVLLAL-GKKGVIINVG 245 (330)
Q Consensus 227 i~~~~l~~m-k~gailIN~~ 245 (330)
....+ +.|..+||.|
T Consensus 82 ----~v~~~~~~G~~VIDlS 97 (336)
T PRK05671 82 ----FAEKARAAGCSVIDLS 97 (336)
T ss_pred ----HHHHHHHCCCeEEECc
Confidence 33322 4688899987
No 496
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=89.93 E-value=8.2 Score=39.84 Aligned_cols=187 Identities=19% Similarity=0.142 Sum_probs=112.7
Q ss_pred cCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHh--
Q 020160 102 RGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEA-- 179 (330)
Q Consensus 102 ~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~-- 179 (330)
..|.+.|.-- .-+|-.+++-+|+.+|-. ++.|...++.|+|.|..|-.+|+.+..
T Consensus 288 ~~i~~FnDDi---QGTaaV~lAgll~A~r~~--------------------g~~l~d~riv~~GAGsAgigia~ll~~~~ 344 (581)
T PLN03129 288 TTHLCFNDDI---QGTAAVALAGLLAALRAT--------------------GGDLADQRILFAGAGEAGTGIAELIALAM 344 (581)
T ss_pred cCCCEecccc---chHHHHHHHHHHHHHHHh--------------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence 4677777532 235556777777777632 456889999999999999999999876
Q ss_pred ---CCC-------EEEEECCCCC-----CC-C---------CCCCCCCHHHHhhc--CCEEEEeccCCccccccccHHHH
Q 020160 180 ---FGC-------CVSYNSRNKK-----PS-V---------TYPFYPDVCELAAN--SDVLIICCALTDQTHHLINKQVL 232 (330)
Q Consensus 180 ---~G~-------~V~~~~~~~~-----~~-~---------~~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l 232 (330)
.|. ++..+|+..- .. . ......+|.|+++. .|+++=+- ..-+.|+++.+
T Consensus 345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi 420 (581)
T PLN03129 345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVL 420 (581)
T ss_pred HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHH
Confidence 466 6777776431 11 0 11123589999999 89887542 22368999999
Q ss_pred hcCC---CCcEEEEcCCCcccCHHHHHHHHH--cCC-ceEEEEecCCCCCCCC-c---ccccCCceEEcCCCCCCCH---
Q 020160 233 LALG---KKGVIINVGRGAIIDEKEMVGCLL--RGE-IGGAGLDVFENEPDVP-E---QLFALDNVVLSPHSAVFTP--- 299 (330)
Q Consensus 233 ~~mk---~gailIN~~rg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EP~~~-~---~L~~~~nvilTPHia~~t~--- 299 (330)
+.|. +.+++.=.|...---|-.-.++.+ +|+ |.+.|. .-+|..- . .-=+..|+.+=|=++-..-
T Consensus 421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGS---Pf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~ 497 (581)
T PLN03129 421 EAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGS---PFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSG 497 (581)
T ss_pred HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCC---CCCCeeeCCeeecCccccceeeccchhhHHHhcC
Confidence 9995 788988888765333322233333 355 433321 1111100 1 1224568888887654221
Q ss_pred --HHHHHHHHHHHHHHHHHHc
Q 020160 300 --ESFKDVCELAVANLEAFFS 318 (330)
Q Consensus 300 --~~~~~~~~~~~~nl~~~~~ 318 (330)
.--+.|.-.+++-|-++..
T Consensus 498 a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 498 AIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CcCCCHHHHHHHHHHHHHhCC
Confidence 1234555566666655553
No 497
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=89.93 E-value=0.73 Score=41.93 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=34.0
Q ss_pred ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160 155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKP 193 (330)
Q Consensus 155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~ 193 (330)
.+.||++.|.| -|.||+++|+.|...|++|+..+++...
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~ 45 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD 45 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 47899999999 5899999999999999999988876543
No 498
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.84 E-value=0.61 Score=45.00 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=48.8
Q ss_pred eEEEEe-cChHHHHHHHHHHhCCCEE---EEECCCCCCCC-----CCC-CCC--CHHHHhhcCCEEEEeccCCccccccc
Q 020160 160 RVGIVG-LGSIGSEVAKRLEAFGCCV---SYNSRNKKPSV-----TYP-FYP--DVCELAANSDVLIICCALTDQTHHLI 227 (330)
Q Consensus 160 ~vgIiG-~G~IG~~~A~~l~~~G~~V---~~~~~~~~~~~-----~~~-~~~--~l~ell~~aDvV~l~~P~t~~t~~li 227 (330)
+|+||| -|.+|+.+++.|...|+.+ .+..+...... +.. ... +. +.+.++|+++.++|.... ..+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~s-~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSVS-KEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHHH-HHHH
Confidence 589999 8999999999998866643 33333322111 110 011 22 345899999999986533 2221
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 020160 228 NKQVLLALGKKGVIINVG 245 (330)
Q Consensus 228 ~~~~l~~mk~gailIN~~ 245 (330)
.+ ..+.|+++|+.+
T Consensus 79 -~~---~~~~G~~VID~s 92 (339)
T TIGR01296 79 -PK---AAKCGAIVIDNT 92 (339)
T ss_pred -HH---HHHCCCEEEECC
Confidence 11 235688888877
No 499
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=89.77 E-value=0.49 Score=40.16 Aligned_cols=29 Identities=34% Similarity=0.347 Sum_probs=23.8
Q ss_pred ceEEEEecChHHHHHHHHHHh-CCCEEEEE
Q 020160 159 KRVGIVGLGSIGSEVAKRLEA-FGCCVSYN 187 (330)
Q Consensus 159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~ 187 (330)
.+|||+|+|+||+.+++.+.. -++++.+.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai 30 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAI 30 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEe
Confidence 379999999999999998874 56777654
No 500
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.73 E-value=0.6 Score=41.91 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=32.8
Q ss_pred cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160 156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK 191 (330)
Q Consensus 156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~ 191 (330)
+.||++.|.|. |.||+.+|+.|...|++|+..+|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 68999999997 8999999999999999999888754
Done!