RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020160
(330 letters)
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 375 bits (964), Expect = e-130
Identities = 143/316 (45%), Positives = 208/316 (65%), Gaps = 10/316 (3%)
Query: 12 PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
VL++ L ++F + + + +FL L A S++A+ ++ A
Sbjct: 24 IGVLMMCPMSTYLEQELDKRF------KLFRYWTQPAQ-RDFLALQAESIRAVVGNSNAG 76
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
AE++ LP++ +V + S GL+ +D+++C +GV + N +V ++DVAD A+GL++ VL
Sbjct: 77 ADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVL 136
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
R++ D +VR+G W +F L +K GKRVGI+GLG IG VA+R EAF C +SY SR
Sbjct: 137 RRICECDKYVRRGAWK-FGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSR 195
Query: 190 NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI 249
+KKP+ Y +Y V ELA+NSD+L++ C LT +T H+IN++V+ ALG KGV+IN+GRG
Sbjct: 196 SKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255
Query: 250 IDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELA 309
+DE E+V L+ G +GGAGLDVFE EP+VPE+LF L+NVVL PH T E+ K + +L
Sbjct: 256 VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 315
Query: 310 VANLEAFFSNKPLLTP 325
V NLEA FS KPLLTP
Sbjct: 316 VGNLEAHFSGKPLLTP 331
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 368 bits (946), Expect = e-128
Identities = 102/316 (32%), Positives = 165/316 (52%), Gaps = 10/316 (3%)
Query: 12 PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
P +LL+ P L + + Y++A L S++A+ + GA
Sbjct: 31 PDLLLVEPMMPFVMDELQRNY------SVHRLYQAADR--PALEAALPSIRAVATGGGAG 82
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
++ E + LP + ++ G + +D+ RRR + + V ++DVAD + L++ VL
Sbjct: 83 LSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVL 142
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
R++ D VR+G W + PLG GKR+G++GLG IG +A R EAFG V Y +R
Sbjct: 143 RRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNR 202
Query: 190 NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI 249
+ V + + +LA +SDVL +C A + T ++++ +L ALG +G+++NV RG +
Sbjct: 203 STLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNV 262
Query: 250 IDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELA 309
+DE ++ L G I GAGLDVF NEP + + N VL PH T E+ + +L
Sbjct: 263 VDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLV 322
Query: 310 VANLEAFFSNKPLLTP 325
+ANL A F+ +
Sbjct: 323 LANLAAHFAGEKAPNT 338
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 292 bits (749), Expect = 6e-98
Identities = 87/324 (26%), Positives = 154/324 (47%), Gaps = 19/324 (5%)
Query: 12 PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
+ L R+ P+ A L ++F L+ L + AH + +F +A
Sbjct: 29 QKAFLCRRFTPAIEAELRQRF-------DLEVNLEDTVLTPSGIASRAHGAEVLFVTATE 81
Query: 69 PVTAEIL-RLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
+TAE++ +L P ++ + S G +HID+ R G+ + + +V S+ A+ A+ L+++
Sbjct: 82 AITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLN 141
Query: 128 VLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
R+ AD VR G WP LG L G+R+GI G+G IG +A R FG + Y
Sbjct: 142 ACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHY 201
Query: 187 NSRNKKPSVT---YPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN 243
++R + ++ + L SD+ +I + ++ + + + V+IN
Sbjct: 202 HNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVIN 261
Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH--SAVFTPES 301
+ RG +I++ ++ L + AGLDVF NEP + + +LDN+ L+PH SA T E+
Sbjct: 262 ISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSA--THET 319
Query: 302 FKDVCELAVANLEAFFSNKPLLTP 325
+ L + +EA +
Sbjct: 320 RDAMGWLLIQGIEALNQSDVPDNL 343
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 272 bits (697), Expect = 4e-90
Identities = 85/338 (25%), Positives = 140/338 (41%), Gaps = 28/338 (8%)
Query: 12 PQVLLLRKP-----SGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFS-- 64
P+VLLL P ++ ++F + +AI
Sbjct: 4 PRVLLLGDPARHLDDLWSDFQQKF----EVIPANLTTHDGFKQALREKRYGDFEAIIKLA 59
Query: 65 ----SAGAPVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVAD 119
+ P A+++ LP +++ A AG + +D+ RGVA AN+ +D
Sbjct: 60 VENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSD 119
Query: 120 YALGLLIDVLRKLSAADCFVRQGLWP-----INAEFPLGSKLGGKRVGIVGLGSIGSEVA 174
AL L++ V R S ++ R G G +G VGLG+I E+A
Sbjct: 120 LALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIA 179
Query: 175 KR-LEAFGCCVSYNSRNKKP-----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228
++ + G + Y ++ + ELA SD + + THHLI+
Sbjct: 180 RKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLID 239
Query: 229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNV 288
+ A+ I+N RG +I + ++ L G++ AGLDV E EP V ++L + +V
Sbjct: 240 EAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHV 299
Query: 289 VLSPHSAVFTPESFKDVCELAVANLEAFFSN-KPLLTP 325
L+ H E+F + L + N++ F KPLLTP
Sbjct: 300 TLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTP 337
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 270 bits (693), Expect = 1e-89
Identities = 106/327 (32%), Positives = 167/327 (51%), Gaps = 22/327 (6%)
Query: 12 PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
P+V + R+ G ML ++F ++ + + E L V A+ +
Sbjct: 3 PKVFITREIPEVGIKMLEDEF-------EVEVWGDEKEIPREILLKKVKEVDALVTMLSE 55
Query: 69 PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
+ E+ P++R+V + G ++ID+ E +RG+ + N +V ++ AD A LL+
Sbjct: 56 RIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115
Query: 129 LRKLSAADCFVRQGLWPINA-----EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
R + D FVR G W ++ LG + GK +GI+GLG IG +AKR + F
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMR 175
Query: 184 VSYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
+ Y SR +K V + + +L SD +++ LT +T+HLIN++ L + K +
Sbjct: 176 ILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAI 235
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH--SAVFT 298
+IN+ RG ++D +V L G I GAGLDVFE EP E+LF LDNVVL+PH SA +
Sbjct: 236 LINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSA--S 293
Query: 299 PESFKDVCELAVANLEAFFSNKPLLTP 325
+ + + EL NL AF + T
Sbjct: 294 FGAREGMAELVAKNLIAFKRGEIPPTL 320
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 265 bits (680), Expect = 8e-88
Identities = 81/329 (24%), Positives = 147/329 (44%), Gaps = 27/329 (8%)
Query: 12 PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
++L+ + A E + + A+ + + + A SV A+ +
Sbjct: 2 KKILITWPLPEAAMARARESYD-------VIAHGDDPKITIDEMIETAKSVDALLITLNE 54
Query: 69 PVTAEILRLLPEVRL-VVAT-SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
E++ +PE + ++T S G +HID+ C+ RG+ + NA + + A+ A+ LL+
Sbjct: 55 KCRKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLL 113
Query: 127 DVLRKLSAADCFVRQGLWP-INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
R+ + +R WP +G KL K +GI G GSIG +AKR + F +
Sbjct: 114 GSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDID 173
Query: 186 YNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK 238
Y ++ S T+ + + L + S + T +T + NK + +L +
Sbjct: 174 YFDTHRASSSDEASYQATF--HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 231
Query: 239 GVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH--SAV 296
+++N RG ++D + +V L G + AG DVF EP++ E + L N L PH SA
Sbjct: 232 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA- 290
Query: 297 FTPESFKDVCELAVANLEAFFSNKPLLTP 325
++ +D+ A ++A F +
Sbjct: 291 -ATQAREDMAHQANDLIDALFGGADMSYA 318
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 262 bits (671), Expect = 8e-87
Identities = 62/280 (22%), Positives = 116/280 (41%), Gaps = 9/280 (3%)
Query: 50 EFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA 109
F + + + ++ + +TAE L +P ++ + +AGL+H+ V +A
Sbjct: 20 YFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPH-VTVAGN 78
Query: 110 GNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI 169
++ VA++AL LL+ +++ +++G + + G++V ++GLG I
Sbjct: 79 AGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYG---RDVEIPLIQGEKVAVLGLGEI 135
Query: 170 GSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229
G+ V K L A G V SR K + F + E + + L T L+
Sbjct: 136 GTRVGKILAALGAQVRGFSRTPKEGP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKY 194
Query: 230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDN 287
Q L + + V +NVGR ++D ++ L DV+ D + F+L N
Sbjct: 195 QHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN 254
Query: 288 VVLSPH--SAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
VV +P ++ + AV NL + +
Sbjct: 255 VVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNI 294
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 260 bits (668), Expect = 3e-86
Identities = 100/318 (31%), Positives = 156/318 (49%), Gaps = 17/318 (5%)
Query: 14 VLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVT 71
VL+ R L E+ LP E L + + +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEV-----EVHRGLFLPKAELLK-RVEGAVGLIPTVEDRID 56
Query: 72 AEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRK 131
AE++ ++++ S G++H+D+ R RG+ + + V +E AD L LL+ V R+
Sbjct: 57 AEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARR 116
Query: 132 LSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
+ + R GLW E LG L G +G+VG+G IG VAKR AFG V Y++R
Sbjct: 117 VVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHART 176
Query: 191 KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
KP + + EL +DV+ + LT +TH L+N++ L A+ + +++N RGA++
Sbjct: 177 PKPLPYP--FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALV 234
Query: 251 DEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSPH--SAVFTPESFKDVCE 307
D + +V LRG + GAGLDV + EP P L+AL N V++PH SA + + + E
Sbjct: 235 DTEALVE-ALRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSA--GRTTRERMAE 291
Query: 308 LAVANLEAFFSNKPLLTP 325
+AV NL A + P
Sbjct: 292 VAVENLLAVLEGREPPNP 309
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 259 bits (664), Expect = 2e-85
Identities = 89/326 (27%), Positives = 146/326 (44%), Gaps = 19/326 (5%)
Query: 12 PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
+V + R+ G L ++ ++S P+ + L +
Sbjct: 9 MKVFVTRRIPAEGRVALARAADCE-----VEQWDSDEPIPAKELERGVAGAHGLLCLLSD 63
Query: 69 PVTAEIL-RLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
V IL ++++ S G++H+ + E ++RG+ + +V ++ A+ A+ LL+
Sbjct: 64 HVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLT 123
Query: 128 VLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC-VS 185
R+L A V+ G W + G L VGI+GLG IG +A+RL+ FG
Sbjct: 124 TCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFL 183
Query: 186 YNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
Y R +P F + ELAA SD +++ C+LT T L NK + + V I
Sbjct: 184 YTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFI 243
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP-DVPEQLFALDNVVLSPH--SAVFTP 299
N+ RG ++++ ++ L G+I AGLDV EP L L N V+ PH SA T
Sbjct: 244 NISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSA--TH 301
Query: 300 ESFKDVCELAVANLEAFFSNKPLLTP 325
+ + LA NL A +P+ +
Sbjct: 302 RTRNTMSLLAANNLLAGLRGEPMPSE 327
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 246 bits (630), Expect = 3e-80
Identities = 84/335 (25%), Positives = 148/335 (44%), Gaps = 34/335 (10%)
Query: 12 PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
P++++ + +L L ++ L E + +A+ +
Sbjct: 3 PKLVITHRVHEEILQLLAPHC-------ELITNQTDSTLTREEILRRCRDAQAMMAFMPD 55
Query: 69 PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
V A+ L+ PE+R++ G ++ DV C RGV L ++ + A+ A+GL + +
Sbjct: 56 RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
R L AAD FVR G + G+ L VG +G+G+IG +A RL+ +G + Y+
Sbjct: 116 GRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHE 175
Query: 189 RNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
+ + EL A+SD +++ L T HL+N ++ LAL + G +
Sbjct: 176 AKALDTQTEQRLGLR---QVACSELFASSDFILLALPLNADTLHLVNAEL-LALVRPGAL 231
Query: 242 -INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--------PDVPEQLFALDNVVLSP 292
+N RG+++DE ++ L RG++GG DVFE E + L A N + +P
Sbjct: 232 LVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTP 291
Query: 293 H--SAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
H SA ++ A N+ + + +
Sbjct: 292 HIGSA--VRAVRLEIERCAAQNILQALAGERPINA 324
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 231 bits (591), Expect = 2e-74
Identities = 67/298 (22%), Positives = 129/298 (43%), Gaps = 15/298 (5%)
Query: 37 QYLKAYESALPLHEFLTLHAHSVKA-----IFSSAGAPVTAEILRLLPEVRLVVATSAGL 91
+ L+ ++ P F A + + + + R +++ V SAG+
Sbjct: 13 EQLQQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHPLLKTILARPTNQLKFVQVISAGV 72
Query: 92 NHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFP 151
+++ + + GV +AN + ++ +++ L ++ V+R AA R A
Sbjct: 73 DYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQ--WALPM 130
Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELA 207
S L G+++ I G G IG +A + A G V + P+ T F +
Sbjct: 131 TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAF-TATADAL 189
Query: 208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGA 267
A ++ ++ LT THHL + ++ ++ ++IN+GRG +D ++ L ++ A
Sbjct: 190 ATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMA 249
Query: 268 GLDVFENEPDVPEQ--LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323
LDV E EP +P L+ D+V+++PH + V + AN F + L+
Sbjct: 250 ALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLV 306
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 233 bits (596), Expect = 2e-74
Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 12/267 (4%)
Query: 64 SSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALG 123
A +T E + ++L + G +H+D+ R V +A S VA++ +
Sbjct: 97 PFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVM 156
Query: 124 LLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
+++ ++R + + R+G W I L VG V G IG V +RL F
Sbjct: 157 MILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVH 216
Query: 184 VSYNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG 236
+ Y R++ P +T+ + ++ DV+ + C L +T H+IN + L L
Sbjct: 217 LHYTDRHRLPESVEKELNLTW--HATREDMYPVCDVVTLNCPLHPETEHMINDE-TLKLF 273
Query: 237 KKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSPHS 294
K+G I+N RG + D + L G + G DV+ +P + + ++PH
Sbjct: 274 KRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHI 333
Query: 295 AVFTPESFKDVCELAVANLEAFFSNKP 321
+ T + LE FF +P
Sbjct: 334 SGTTLTAQARYAAGTREILECFFEGRP 360
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 226 bits (579), Expect = 1e-72
Identities = 78/294 (26%), Positives = 142/294 (48%), Gaps = 21/294 (7%)
Query: 47 PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVAL 106
+ + + I +T E+L +P ++L+ S G +HID+ C+++G+ +
Sbjct: 31 DVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILV 90
Query: 107 ANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGL 166
+ E VA++ +++ ++++L + V++ + ++E L +L +G++G
Sbjct: 91 THIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEI-LARELNRLTLGVIGT 149
Query: 167 GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF--YPDVCELAANSDVLIICCALTDQTH 224
G IGS VA AFG V K+ + Y + EL SDV+ + T +TH
Sbjct: 150 GRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETH 209
Query: 225 HLINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-- 281
H+IN++ ++L K GV +IN RG ++D + RG+ G GLDVFE+E + +
Sbjct: 210 HMINEER-ISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKY 268
Query: 282 --------------LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321
L DNV+++PH A +T +S + + E V ++AF
Sbjct: 269 TEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDL 322
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 225 bits (577), Expect = 4e-72
Identities = 102/325 (31%), Positives = 164/325 (50%), Gaps = 22/325 (6%)
Query: 12 PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
P+V +L K L + E L E L I S
Sbjct: 3 PKVGVLLKMKREALEELKKYA----------DVEIILYPSGEELKGVIGRFDGIIVSPTT 52
Query: 69 PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
+T E+L ++++ SAG ++ID+ E +RG+ + + SE VA++ +GL+I++
Sbjct: 53 KITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112
Query: 129 LRKLSAADCFVRQGLW----PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
+RK+ AD F+R+G W I F L GK+VGI+G+G+IG +A+RL FG +
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKL 172
Query: 185 SYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
Y SR++K +V Y D+ EL SD++I+ LT T+H+IN++ + + +
Sbjct: 173 YYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEE-RVKKLEGKYL 231
Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALD-NVVLSPHSAVFTPE 300
+N+GRGA++DEK + + +G++ G DVFE EP +LF + VL+PH A E
Sbjct: 232 VNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALE 291
Query: 301 SFKDVCELAVANLEAFFSNKPLLTP 325
+ +DV AV NL +
Sbjct: 292 AQEDVGFRAVENLLKVLRGEVPEDL 316
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 220 bits (562), Expect = 2e-70
Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 10/258 (3%)
Query: 66 AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLL 125
A A V + L +++ A SAG++HIDV V +NAG +S VA++A LL
Sbjct: 35 AEAQVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALL 93
Query: 126 IDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
+ + + + ++ G++ + L GK +GI+G G IG VA +AFG V
Sbjct: 94 LAHAKNILENNELMKAGIF----RQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVI 149
Query: 186 YNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINV 244
+R+ +L SD ++I LTD+T ++N + LLA +K + I+NV
Sbjct: 150 AYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSR-LLANARKNLTIVNV 208
Query: 245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKD 304
R ++ + +M+G L DV+ NEP++ E L N +LSPH A D
Sbjct: 209 ARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITE--TNLRNAILSPHVAGGMSGEIMD 266
Query: 305 V-CELAVANLEAFFSNKP 321
+ +LA N+ FF +
Sbjct: 267 IAIQLAFENVRNFFEGEG 284
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 210 bits (536), Expect = 5e-66
Identities = 64/295 (21%), Positives = 119/295 (40%), Gaps = 22/295 (7%)
Query: 47 PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGV 104
L A + AE L+ L + + + + G+++ID+ + + G
Sbjct: 35 LLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGF 94
Query: 105 ALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIV 164
+ N +A++A +LR+ A D V + +G ++ + VG+V
Sbjct: 95 QITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT--IGREVRDQVVGVV 152
Query: 165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY--PFYPDVCELAANSDVLIICCALTDQ 222
G G IG + +E FG V + P + + + +L +DV+ +
Sbjct: 153 GTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPA 212
Query: 223 THHLINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP----- 276
H+IN + + A K+ V I+NV RG ++D ++ L G+I G +DV+E E
Sbjct: 213 NVHMINDESI-AKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNE 271
Query: 277 ---------DVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
L A NV+++P +A +T + +++ A N K
Sbjct: 272 DWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA 326
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 209 bits (534), Expect = 1e-65
Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 26/297 (8%)
Query: 47 PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRL-VVAT-SAGLNHIDVVECRRRGV 104
L E A I S P A + + + + + G ++ID+ ++ G+
Sbjct: 33 FLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGI 92
Query: 105 ALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIV 164
L+N +A++AL + +LR + ++ G + F +G +LG + VG++
Sbjct: 93 RLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVM 151
Query: 165 GLGSIGSEVAKRLEAFGCCV----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALT 220
G G IG K + FG V Y + P Y + +L SDV+ +
Sbjct: 152 GTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYV---SLEDLFKQSDVIDLHVPGI 208
Query: 221 DQTHHLINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP--- 276
+Q H+IN+ L K G +IN R +ID + M+ L G++ G G+D +E E
Sbjct: 209 EQNTHIINEAAF-NLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDL 267
Query: 277 -----------DVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
+ ++L + NVVLSPH A +T + ++ ++ +L F +
Sbjct: 268 LNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET 324
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 207 bits (529), Expect = 8e-65
Identities = 78/335 (23%), Positives = 141/335 (42%), Gaps = 28/335 (8%)
Query: 12 PQVLLLRK---PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGA 68
P V LL +L + A+ A E +
Sbjct: 22 PLVALLDGRDCTVEMPILKDVATV--------AFCDAQSTQEIHEKVLNEAVGALMYHTI 73
Query: 69 PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
+T E L +R++V +G ++ID+ G+A+ N E+ AD L ++++
Sbjct: 74 TLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNL 133
Query: 129 LRKLSAADCFVRQGLWPINAEFP-----LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
R+ + +R+G + E +++ G+ +GI+GLG +G VA R +AFG
Sbjct: 134 YRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFN 193
Query: 184 VSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
V + + + +L +SD + + C L + HHLIN + +
Sbjct: 194 VLFYDPYLSDGVERALGLQR--VSTLQDLLFHSDCVTLHCGLNEHNHHLINDF-TVKQMR 250
Query: 238 KGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHS 294
+G ++N RG ++DEK + L G I GA LDV E+EP Q L N++ +PH+
Sbjct: 251 QGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHA 310
Query: 295 AVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAV 329
A ++ ++ ++ E A + + + + V
Sbjct: 311 AWYSEQASIEMREEAAREIRRAITGRIPDSLKNCV 345
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 205 bits (524), Expect = 2e-64
Identities = 62/317 (19%), Positives = 123/317 (38%), Gaps = 29/317 (9%)
Query: 28 EQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPE--VRLVV 85
E + +K L E + A A+ + L + + V+ ++
Sbjct: 17 EACNKEFGYD-IKCVPDYLNTKETAEM-AAGFDAVILRGNCFANKQNLDIYKKLGVKYIL 74
Query: 86 ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
+AG +HID + G +A +A+ A+ + +LR + + +
Sbjct: 75 TRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK 134
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV----SYNSRNKKPSVTYPFYP 201
++A F ++ VG+VGLG IG A+ G V + + + T
Sbjct: 135 VDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQV--- 190
Query: 202 DVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLL 260
+ E+ SD++ I + ++ + L K G ++N RG ++D + ++ +
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFL-KKMKDGAILVNCARGQLVDTEAVIEAVE 249
Query: 261 RGEIGGAGLDVFENEPD----------VPEQLFA-----LDNVVLSPHSAVFTPESFKDV 305
G++GG G DV + E + LF V+++PH +T E+ K++
Sbjct: 250 SGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNM 309
Query: 306 CELAVANLEAFFSNKPL 322
E++ NL+
Sbjct: 310 VEVSYQNLKDLAETGDC 326
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 203 bits (519), Expect = 2e-63
Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 16/269 (5%)
Query: 64 SSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYA 121
A VTAE ++ ++L++ G +HID+ G+ +A NV S VA+
Sbjct: 70 PFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVS--VAEDE 127
Query: 122 LGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG 181
L ++ ++R V +G W + L GK +G VG G IG + +RL+ FG
Sbjct: 128 LMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFG 187
Query: 182 CCVSYNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA 234
C + Y+ R + + D+ E+ DV++I LT++T + NK+ L+
Sbjct: 188 CNLLYHDRLQMAPELEKETGAKF--VEDLNEMLPKCDVIVINMPLTEKTRGMFNKE-LIG 244
Query: 235 LGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSP 292
KKGV I+N RGAI++ + +V + G IGG DV++ +P + + N ++P
Sbjct: 245 KLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTP 304
Query: 293 HSAVFTPESFKDVCELAVANLEAFFSNKP 321
H++ T ++ LE +F +
Sbjct: 305 HTSGTTIDAQLRYAAGTKDMLERYFKGED 333
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 202 bits (517), Expect = 5e-63
Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 26/274 (9%)
Query: 69 PVTAEILRLLPEVRLVVAT----SAGLNHIDVVECRRRGVALANA-GNVFSEDVADYALG 123
VT ++L LP+++++ T HID+ C +GV + G+ + A+
Sbjct: 60 RVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVA--PAELTWA 117
Query: 124 LLIDVLRKLSAADCFVRQGLW--------PINAEFPLGSKLGGKRVGIVGLGSIGSEVAK 175
L++ R++ ++ G W + F +G L G+ +GI G G IG VA
Sbjct: 118 LVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177
Query: 176 RLEAFGCCVSYNSRNKKP----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231
AFG V R + + L SDVL + L D+T +I
Sbjct: 178 YGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVA- 236
Query: 232 LLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDN 287
L K +N R +++E MV L RG G A +DVFE EP L ++N
Sbjct: 237 DLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHT--LLRMEN 294
Query: 288 VVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321
+ +PH ES++ +A N+
Sbjct: 295 CICTPHIGYVERESYEMYFGIAFQNILDILQGNV 328
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 194 bits (494), Expect = 2e-59
Identities = 71/279 (25%), Positives = 122/279 (43%), Gaps = 20/279 (7%)
Query: 64 SSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRG--VALANA--GNVFSEDVAD 119
A +T E + +++LVV G +HID+ + G +++ NV S VA+
Sbjct: 68 PFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAE 125
Query: 120 YALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEA 179
+ + ++ ++R A + W + A + GK + +G G IG V +RL
Sbjct: 126 HVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVP 185
Query: 180 FGCCV-SYNSRNKKP-----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL 233
F Y P V ++ EL A +D++ + L T LINK+ LL
Sbjct: 186 FNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKE-LL 244
Query: 234 ALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNV--- 288
+ KKG ++N RGAI +++ L G++ G G DV+ +P + + N
Sbjct: 245 SKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGA 304
Query: 289 --VLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
++PH + T ++ + V LE+FF+ K P
Sbjct: 305 GNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRP 343
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 188 bits (480), Expect = 7e-58
Identities = 74/262 (28%), Positives = 124/262 (47%), Gaps = 17/262 (6%)
Query: 69 PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
+L ++ +T AG++ + + RR L N +F +++Y G L+ +
Sbjct: 56 ARAKPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSL 114
Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
+R+L +Q LW + L G+ + I+G GSIG +A + FG V S
Sbjct: 115 MRQLPLYREQQKQRLW----QSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVS 170
Query: 189 RNKKP----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV 244
R+ + Y P + ++ A +DV++ T +THHL ++ NV
Sbjct: 171 RSGRERAGFDQVYQL-PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNV 229
Query: 245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPH-SAVFTPES 301
GRG I+E +++ L G++G A LDVFE EP +P L+ N++++PH SA P+
Sbjct: 230 GRGNAINEGDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYSFPD- 287
Query: 302 FKDVCELAVANLEAFFSNKPLL 323
DV ++ V N F +PL
Sbjct: 288 --DVAQIFVRNYIRFIDGQPLD 307
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 188 bits (479), Expect = 8e-58
Identities = 87/260 (33%), Positives = 134/260 (51%), Gaps = 18/260 (6%)
Query: 69 PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLI 126
VT ++ P+++++ GL++IDV + +G+ + NA + S VA+ A+GL+
Sbjct: 55 KVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRS--VAELAVGLMF 112
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
V RK++ AD +R+G+W + +G +L GK +GI+G G IG +VAK A G +
Sbjct: 113 SVARKIAFADRKMREGVW--AKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILL 170
Query: 187 N------SRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
R K+ + + D+ L SDV+ I L + T+HLIN++ L L KK
Sbjct: 171 YDPYPNEERAKEVNGKFV---DLETLLKESDVVTIHVPLVESTYHLINEE-RLKLMKKTA 226
Query: 241 -IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE-QLFALDNVVLSPHSAVFT 298
+IN RG ++D +V L G I GAGLDVFE EP + L DNVVL+PH T
Sbjct: 227 ILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAST 286
Query: 299 PESFKDVCELAVANLEAFFS 318
E+ + +
Sbjct: 287 VEAQERAGVEVAEKVVKILK 306
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 185 bits (471), Expect = 2e-56
Identities = 74/263 (28%), Positives = 122/263 (46%), Gaps = 17/263 (6%)
Query: 69 PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLI 126
VTA+++ ++++V G++++D+ R+G+ + N GN S A+ G+++
Sbjct: 78 KVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLS--AAELTCGMIM 135
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
+ R++ A ++ G W +F +G++L GK +GI+GLG IG EVA R+++FG
Sbjct: 136 CLARQIPQATASMKDGKWE-RKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIG 193
Query: 187 ------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
+ V + E+ D + + L T L+N A KKGV
Sbjct: 194 YDPIISPEVSASFGVQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDN-TFAQCKKGV 249
Query: 241 -IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299
++N RG I+DE ++ L G+ GA LDVF EP L +NV+ PH T
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTK 309
Query: 300 ESFKDVCELAVANLEAFFSNKPL 322
E+ E K L
Sbjct: 310 EAQSRCGEEIAVQFVDMVKGKSL 332
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 179 bits (457), Expect = 2e-54
Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 22/267 (8%)
Query: 69 PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLI 126
VT +++ +++++ GL++ID E +R + + A + S + +GL+I
Sbjct: 57 KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDS--AVELTIGLMI 114
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
RK+ + + G++ + G +L GK +GIVG G IG++V A G V
Sbjct: 115 AAARKMYTSMALAKSGIFK---KI-EGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLA 170
Query: 187 ------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
+ +K + + EL NSDV+ + ++ +I+ L K V
Sbjct: 171 YDILDIREKAEKINAKAV---SLEELLKNSDVISLHVTVSKDAKPIIDYP-QFELMKDNV 226
Query: 241 -IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAV 296
I+N R ++ K ++ + +G++ DVF NEP + +L + V+++ H
Sbjct: 227 IIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGA 286
Query: 297 FTPESFKDVCELAVANLEAFFSNKPLL 323
T E+ K V E+ NL ++
Sbjct: 287 QTKEAQKRVAEMTTQNLLNAMKELGMI 313
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 184 bits (469), Expect = 4e-54
Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 17/262 (6%)
Query: 69 PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLI 126
V AE+L P++++V GL+++DV RGV + NA N+ S A++AL LL+
Sbjct: 55 TVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHS--AAEHALALLL 112
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
R++ AAD +R+ W + F G+++ GK VG+VGLG IG VA+R+ AFG V
Sbjct: 113 AASRQIPAADASLREHTWK-RSSF-SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 170
Query: 187 N------SRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
+R + + + +L A +D + + T +T LI+K+ LA K GV
Sbjct: 171 YDPYVSPARAAQLGIELL---SLDDLLARADFISVHLPKTPETAGLIDKE-ALAKTKPGV 226
Query: 241 -IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299
I+N RG ++DE + + G + AGLDVF EP LF L VV++PH T
Sbjct: 227 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTA 286
Query: 300 ESFKDVCELAVANLEAFFSNKP 321
E+ ++ + +
Sbjct: 287 EAQDRAGTDVAESVRLALAGEF 308
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 172 bits (439), Expect = 7e-52
Identities = 68/298 (22%), Positives = 120/298 (40%), Gaps = 19/298 (6%)
Query: 37 QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHI-- 94
++ A E ALP + E+L ++ V AG++ I
Sbjct: 17 WWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEMLAG-RRLKAVFVLGAGVDAILS 75
Query: 95 ---DVVECRRRGVALANA-GNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEF 150
E + L + +YA+ ++ R+ Q LW
Sbjct: 76 KLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALW---KPL 132
Query: 151 PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK--PSVTYPFYPD-VCELA 207
P + VGI+G G +G++VA+ L+A+G + SR++K P V + +
Sbjct: 133 PEYT-REEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFL 191
Query: 208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGA 267
+ VLI T QT +IN ++L L ++N+ RG + E +++ L G++ GA
Sbjct: 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGA 251
Query: 268 GLDVFENEPDVPEQ--LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323
LDVF EP +P++ L+ V ++PH A T + + + +P+
Sbjct: 252 MLDVFSQEP-LPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEPVT 306
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 164 bits (417), Expect = 1e-47
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 20/236 (8%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
+T +++ ++ + A + G N +D+ +RG+ + NA N S VA+ +G L+
Sbjct: 59 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGELLL 116
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-- 185
+LR + A+ +G+ A + GK++GI+G G IG+++ E+ G V
Sbjct: 117 LLRGVPEANAKAHRGVGNKLAA--GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY 174
Query: 186 --YNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-II 242
N + + +L SDV+ + T +++ + + +L K G +I
Sbjct: 175 DIENKLPLGNATQVQ---HLSDLLNMSDVVSLHVPENPSTKNMMGAKEI-SLMKPGSLLI 230
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-----LFALDNVVLSPH 293
N RG ++D + L + GA +DVF EP L DNV+L+PH
Sbjct: 231 NASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH 286
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 163 bits (414), Expect = 3e-47
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 14/233 (6%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
+T EI + V S G N +++ R+RG+ + NA N S VA+ +G +I
Sbjct: 70 LTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRS--VAELVIGEIIM 127
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV-SY 186
++R++ G W A ++ GK +GIVG G+IGS+V E+ G V Y
Sbjct: 128 LMRRIFPRSVSAHAGGWEKTAI--GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYY 185
Query: 187 NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINVG 245
++ +K + EL SDV+ + + T LI + L KKG +IN
Sbjct: 186 DTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKL-RKMKKGAFLINNA 244
Query: 246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-----LFALDNVVLSPH 293
RG+ +D + + L G + GA +DVF EP + L L+NV+L+PH
Sbjct: 245 RGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPH 297
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 160 bits (408), Expect = 1e-46
Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 30/237 (12%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
V +L P + V +AG +H+D ++ G+ + A N + V +Y L+
Sbjct: 52 VNESLLSGTP-INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIA--VVEYVFSALLM 108
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
+ + G L + +GIVG+G++GS + RLEA G
Sbjct: 109 LAERD--------------------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC 148
Query: 188 SRNKKPSVTYPFYPDVCELAANSDVLIICCALTD----QTHHLINKQVLLALGKKGVIIN 243
+ + + EL +DVL L +T HL ++ ++ L ++IN
Sbjct: 149 DPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208
Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300
RG ++D ++ L G+ LDV+E EPD+ L ++ + H A +T E
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIG-TSHIAGYTLE 264
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 159 bits (403), Expect = 8e-46
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 30/237 (12%)
Query: 70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
V+ L P VR V + G +H+D+ G+A ++A N V DY LG L+
Sbjct: 49 VSRAALAGSP-VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARG--VVDYVLGCLLA 105
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
+ G+ L + G+VG G +G + + L G V
Sbjct: 106 MAEVR--------------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVC 145
Query: 188 SRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQ----THHLINKQVLLALGKKGVIIN 243
++ + + L A +DV+ + L T HL+++ L AL ++N
Sbjct: 146 DPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205
Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300
RGA++D + + L G LDV+E EP + A ++ +PH A ++ E
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAARCLIATPHIAGYSLE 261
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 63.8 bits (155), Expect = 9e-12
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTYPFYPDVCELAA 208
+ G V ++GLG +G VA++ A G V +R + +
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELR 212
Query: 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG 247
+ DV I ++ VL + +I++
Sbjct: 213 DVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASK 246
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 39.7 bits (92), Expect = 6e-04
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVS--YNSRNKKPSVTYPFYPDVCELAANSDVLIICC 217
VG++G G+IG +A+ LE G ++ + R + + + E + +
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKM----VRGIDEFLQREMDVAVEA 57
Query: 218 ALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
A K +L G ++++ G A D V
Sbjct: 58 ASQQAVKDYAEK--ILKAGIDLIVLSTGAFADRDFLSRV 94
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 39.1 bits (91), Expect = 0.001
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFG-----CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLI 214
V +VG+G GS + L+ + + SR + S+ + + + ++ +
Sbjct: 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDV 68
Query: 215 ICCALTDQTHHLINKQVLLALGK 237
+H +Q L A GK
Sbjct: 69 AYICSESSSHEDYIRQFLQA-GK 90
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 37.7 bits (87), Expect = 0.003
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDV-LIICCA 218
V I+G+G+IG ++ + F +Y+ +K P + E SDV ++ CA
Sbjct: 14 TVLIIGMGNIGKKLVELGN-FEKIYAYDRISKDI----PGVVRLDEFQVPSDVSTVVECA 68
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVG 245
+ + +L +II+
Sbjct: 69 SPEAVKEYSLQ--ILKNPVNYIIISTS 93
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 37.7 bits (88), Expect = 0.004
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 160 RVGIVGLGSIGS-----EVAKRLEAF--GCCVSYNSRNKKPSVTYP---FYPDVCELAAN 209
+G G + V R +++ +++ ++ + Y F D+ E+ +
Sbjct: 4 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLND 63
Query: 210 SDVLIICCALTDQTHHLINKQVLLALGK 237
DV ++ +H K+ L A GK
Sbjct: 64 PDVKLVVVCTHADSHFEYAKRALEA-GK 90
>1yb4_A Tartronic semialdehyde reductase; structural genomics,
oxidoreductase, salmonella typhimurium LT2, PSI, protein
ST initiative; 2.40A {Salmonella typhimurium}
Length = 295
Score = 36.0 bits (84), Expect = 0.013
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF----YPDVCELAANSDVLII 215
++G +GLG +GS +A L G + + ++ +D++ I
Sbjct: 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADELLSLGAVNVETARQVTEFADIIFI 64
Query: 216 CCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-ID 251
+ D T + + VL G+ G +G +D
Sbjct: 65 M--VPD-TPQV--EDVL--FGEHGCAKTSLQGKTIVD 94
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 35.6 bits (82), Expect = 0.015
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 10/103 (9%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF------GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVL 213
R IVG G+IG + L G + + D+ E + DV
Sbjct: 11 RAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDI-EQLESVDVA 69
Query: 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
++C + +L G I+ + +
Sbjct: 70 LVC---SPSREVERTALEILKKGICTADSFDIHDGILALRRSL 109
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism,
tartaric acid, target 11128H, NYSGXRC, PSI-2, structural
genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Length = 303
Score = 35.6 bits (83), Expect = 0.016
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY------PFYPDVCELAANSDV 212
VGIVGLGS+G A+ G N + E A D
Sbjct: 8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDA 67
Query: 213 LIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
L+I Q +QVL G+ GV + G+ +
Sbjct: 68 LVILVVNAAQV-----RQVL--FGEDGVAHLMKPGSAV 98
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 35.7 bits (83), Expect = 0.016
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 160 RVGIVGLGSIGS-------EVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVCELAAN 209
++G +G G + + + LE + + F D+ EL +
Sbjct: 4 KMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTD 63
Query: 210 SDVLIICCALTDQTHHLINKQVLLALGK 237
++ +I TH+ + KQ +LA GK
Sbjct: 64 PEIELITICTPAHTHYDLAKQAILA-GK 90
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 34.2 bits (79), Expect = 0.021
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
++ K+ ++GLG G + K L G V
Sbjct: 2 GRIKNKQFAVIGLGRFGGSIVKELHRMGHEV 32
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 35.2 bits (80), Expect = 0.021
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-----SVTYPFYPDVCELAANSDVLI 214
+ VG G++ + L+ SR+ V + + + V+
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63
Query: 215 ICC 217
+
Sbjct: 64 VIV 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.024
Identities = 39/218 (17%), Positives = 59/218 (27%), Gaps = 105/218 (48%)
Query: 10 QFPQVLLLRKPSGFAMLGEQFFTSNK--FQYLKAYESALPLHEFLTLHA-HSV---KAIF 63
QF Q P A+ K F+ LK+ + +P A HS+ A+
Sbjct: 1730 QFTQ------P---AL-----TLMEKAAFEDLKS-KGLIPADATF---AGHSLGEYAALA 1771
Query: 64 SSAGAPVTAEILRLLP-E--VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADY 120
S A + E V +V RG+ + A ++Y
Sbjct: 1772 SLADV---------MSIESLVEVV---------------FYRGMTMQVAVPRDELGRSNY 1807
Query: 121 ALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVG----LGSIGSEVAKR 176
+ A + RV L + V KR
Sbjct: 1808 GM-----------IA--------------------INPGRVAASFSQEALQYVVERVGKR 1836
Query: 177 ----LEAFGCCVSYNSRNKKPSVTYPFYPDVC--ELAA 208
+E V+YN N+ Y V +L A
Sbjct: 1837 TGWLVEI----VNYNVENQ----QY-----VAAGDLRA 1861
Score = 31.6 bits (71), Expect = 0.43
Identities = 31/157 (19%), Positives = 47/157 (29%), Gaps = 43/157 (27%)
Query: 60 KAIFSSAGAPVTAEILRLLP--EVRLVVATSAGLNHIDVVECRRRGVALANAGNVFS-ED 116
K FS+ PV + P LV A+ + + V+ D
Sbjct: 413 KLKFSNRFLPVAS------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VYDTFD 464
Query: 117 VADYALGLLIDVLRKLSA------ADCFVRQGL-WPINAEFP------LGSKLGGKRVGI 163
+D LR LS DC +R + W +F G G G
Sbjct: 465 GSD---------LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP--G----GA 509
Query: 164 VGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSVTYPF 199
GLG + + + G + + + P Y F
Sbjct: 510 SGLGVL---THRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 29.2 bits (65), Expect = 2.4
Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 54/125 (43%)
Query: 206 LAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG 265
LA+ +DV+ ++ L+ + RG + + R E+G
Sbjct: 1770 LASLADVM----SIES----------LVEVVFY-------RGMTMQV-----AVPRDELG 1803
Query: 266 GAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCE---------LAVANLEAF 316
+ + P V A F+ E+ + V E + + N
Sbjct: 1804 RSNYGMIAINP---------GRVA-----ASFSQEALQYVVERVGKRTGWLVEIVNY--- 1846
Query: 317 FSNKP 321
N
Sbjct: 1847 --NVE 1849
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 34.8 bits (81), Expect = 0.028
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR--NKKPS---------VTYPFYPDVCEL 206
GK+VGIVGLG IGS +A G SR K+ + D E
Sbjct: 180 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEK 239
Query: 207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
++ LI+ CA + + A+ G I+++
Sbjct: 240 YFDTFDLIVVCA--SSLTDIDFNIMPKAMKVGGRIVSIS 276
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 34.6 bits (80), Expect = 0.031
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 160 RVGIVGLGSIGS----EVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDV 212
+VGI+G G GS + L+ + SR ++ +P ++ E+ + +
Sbjct: 7 KVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAI 66
Query: 213 LIICCALTDQTHHLINKQVLLALGK 237
++ H+ + A GK
Sbjct: 67 ELVIVTTPSGLHYEHTMACIQA-GK 90
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 34.4 bits (80), Expect = 0.039
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 148 AEFPLGSK-LGGKRVGIVGLGSIGSEVAKRLEAFGC 182
A+ GS L G V + GLG++ + K+L G
Sbjct: 162 AKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGA 197
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 34.2 bits (78), Expect = 0.046
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP-----FYPDVCELAANSDVLI 214
RVG +G G + +A RL + G V + + PS E + V+I
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 215 ICC 217
Sbjct: 62 SAV 64
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 33.0 bits (76), Expect = 0.053
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCV 184
++G + G + + L A G V
Sbjct: 7 YEYIVIGSEAAGVGLVRELTAAGKKV 32
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 33.8 bits (78), Expect = 0.056
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 160 RVGIVGLGSIGS-------EVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDV 212
+ ++G G +G L + K+ + DV
Sbjct: 9 NIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDV 68
Query: 213 LIICCALTDQTHHLINKQVLLALGK 237
++ A + TH + + L A GK
Sbjct: 69 DLVVIASPNATHAPLARLALNA-GK 92
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 33.8 bits (78), Expect = 0.068
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 160 RVGIVGLGSIGSEVAKRL-------EAFGCCVSYNSRNKKPSVTY--PFYPDVCELAANS 210
++G++GLGSI + + E G + +K Y + + LA
Sbjct: 8 KMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKC 67
Query: 211 DVLIICCALTDQTHHLINKQVLLALGK 237
D + + + T+ TH+ I K +L G
Sbjct: 68 DCIFLHSS-TE-THYEIIKILLNL-GV 91
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 33.9 bits (77), Expect = 0.069
Identities = 11/96 (11%), Positives = 24/96 (25%), Gaps = 19/96 (19%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF------GCCVSYNSR------------NKKPSVTYPFYP 201
R+ + +G G + + K V
Sbjct: 22 RIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGND 81
Query: 202 DVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
D + + ++ + + + HH + A GK
Sbjct: 82 DYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKA-GK 116
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 33.1 bits (75), Expect = 0.071
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 149 EFPLGSKLGGK--RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
EFPL K V I G G G + ++ G V + SRN
Sbjct: 8 EFPLTVDSSEKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRN 51
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 33.7 bits (78), Expect = 0.073
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
L G V + GLG++G +A G +
Sbjct: 173 LDGLTVLVQGLGAVGGSLASLAAEAGAQL 201
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 33.2 bits (75), Expect = 0.084
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKKPSVTY------PFYPDVCELAANSDV 212
+ ++G G++ + +AK L G + SR ++ + + D+ E+ + +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 213 LIICC 217
I+
Sbjct: 72 YIVSL 76
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 33.4 bits (77), Expect = 0.089
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-----PFYPDVCELAANSDVL 213
K++G +GLG +GS + L G V+ +R + + E+ + D+
Sbjct: 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDIT 90
Query: 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
C + K ++ LG GV+ + G
Sbjct: 91 FACVSDPKAA-----KDLV--LGPSGVLQGIRPGKCY 120
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 33.1 bits (76), Expect = 0.095
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 160 RVGIVGLGSIGSEVAKRL-------EAFGCCVSYNSRNKKPSVTY--PFYPDVCELAANS 210
R+G+VGLG I + + G ++ ++ P+ + LAA+
Sbjct: 7 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASC 66
Query: 211 DVLIICCALTDQTHHLINKQVLLALGK 237
D + + + T +H + +L A G
Sbjct: 67 DAVFVHSS-TA-SHFDVVSTLLNA-GV 90
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 33.1 bits (76), Expect = 0.10
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 160 RVGIVGLGSIGS-------EVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDV 212
+ G+ G G E + +K+ EL + ++
Sbjct: 7 KTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEI 66
Query: 213 LIICCALTDQTHHLINKQVLLALGK 237
+I D TH+ L A GK
Sbjct: 67 DLIVVNTPDNTHYEYAGMALEA-GK 90
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 32.6 bits (74), Expect = 0.12
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
+VGI+G G +A RL G V SRN
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRN 60
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta
protein, PSI, protein struct initiative; HET: TLA; 1.50A
{Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Length = 242
Score = 32.7 bits (74), Expect = 0.14
Identities = 13/129 (10%), Positives = 35/129 (27%), Gaps = 22/129 (17%)
Query: 181 GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICC------------ALTDQTHHLIN 228
+ + + SD++II ++ +
Sbjct: 51 SDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSH 110
Query: 229 KQVLLALGKKGVIINVGRG----AIIDEKEMV----GCLLRGEIGGAGLDVFENEPDVPE 280
L GK V ++V + + + G + ++ E + E
Sbjct: 111 LFRL--AGKFVVTLDVAESNGSDNVSEYLRDIFSYMGGQILHQVSITNSLKDIAEAQLME 168
Query: 281 QLFALDNVV 289
+ +++V+
Sbjct: 169 ATYKIEDVL 177
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 31.7 bits (73), Expect = 0.15
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN--------KKPSVTYPFYPDV 203
+ K GG ++ +VG G + SE+A V+ RN +K Y D+
Sbjct: 15 IVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDI 74
Query: 204 CELAANSDVLIICCALTDQTHHLINKQVL 232
L N+DV+I T ++ ++ L
Sbjct: 75 DSLIKNNDVIITA---TSSKTPIVEERSL 100
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 32.5 bits (75), Expect = 0.16
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-----PFYPDVCELAANSDVL 213
+VG +GLG +G ++K L G + + RN + +A DV+
Sbjct: 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 65
Query: 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-ID 251
I L + + H+ K+V LG+ G+I G + ID
Sbjct: 66 ITM--LPN-SPHV--KEVA--LGENGIIEGAKPGTVLID 97
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 32.3 bits (74), Expect = 0.16
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 147 NAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCEL 206
F + K V + G G +G A+ L A G +S R +
Sbjct: 11 QFGFKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE--------SI 62
Query: 207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
AN+DV+I+ + T I +++ L + ++ ++
Sbjct: 63 LANADVVIV-SVPINLTLETI-ERLKPYLTENMLLADLT 99
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 32.5 bits (74), Expect = 0.18
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCV--SYNSRNKKPSVTY------PFYPDVCELAANSD 211
++G +G G S +A L G +Y++ + + V E+A D
Sbjct: 26 KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECD 85
Query: 212 VLIICCALTDQTHHLINKQVLLALGKKGVII 242
V+ +T Q + +Q L + +
Sbjct: 86 VIFSL--VTAQAALEVAQQAGPHLCEGALYA 114
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 32.1 bits (74), Expect = 0.18
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-----PFYPDVCELAANSDVL 213
++ G +GLG +GS +AK L GC V+ +R+ + + CE+ + V
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVT 61
Query: 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-ID 251
L D ++V GK GV+ +G G +D
Sbjct: 62 FAM--LAD-PAAA--EEVC--FGKHGVLEGIGEGRGYVD 93
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 32.2 bits (73), Expect = 0.19
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN--KKPSVT------YPFYPDVCELAANS 210
+ G G +++ L G + SRN + ++ + + L +
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVT 65
Query: 211 DVLI 214
+LI
Sbjct: 66 HLLI 69
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 32.3 bits (74), Expect = 0.19
Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 17/92 (18%)
Query: 160 RVGIVGLGSIGSEVAKRL----EAFGCCVSYNSRN--------KKPSVTYPFYPDVCELA 207
++ ++G + L G + + ++ Y + E+
Sbjct: 4 KICVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEML 63
Query: 208 ANSDVLIICCALTDQTHHLINKQVLLAL--GK 237
I+ + K +L AL
Sbjct: 64 EKEKPDILVINTVFSLNG---KILLEALERKI 92
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 32.2 bits (74), Expect = 0.20
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 160 RVGIVGLGSIGSEVAKRLEA--------FGC-----CVSYNSRNKKPSVT--YPFYPDVC 204
VG++GLG++G L G + + +K ++ P +
Sbjct: 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPF 71
Query: 205 ELAANSDVLIIC 216
++ + ++ I+
Sbjct: 72 DVVDDPEIDIVV 83
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB:
1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 32.2 bits (73), Expect = 0.22
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSVTYPFYP--DVCELAANSDVLII 215
RV IVG G++G V K + V SR P + DV + A + DVL +
Sbjct: 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFL 64
Query: 216 C 216
C
Sbjct: 65 C 65
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 32.2 bits (74), Expect = 0.23
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF-------YPDVCELAANSD 211
++G +GLG++G +A L G V + + ++AA SD
Sbjct: 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLM--EANVAAVVAQGAQACENNQKVAAASD 62
Query: 212 VLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-ID 251
++ + V+ G GV+ G + +D
Sbjct: 63 IIFTSLPNAGIV-----ETVM--NGPGGVLSACKAGTVIVD 96
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 32.2 bits (74), Expect = 0.23
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-----PFYPDVCELAANSDVL 213
VG +GLG +G ++ L G V+ +R E+
Sbjct: 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81
Query: 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-ID 251
I + V+ K GV+ + G ID
Sbjct: 82 IAMLSDPCAA-----LSVV--FDKGGVLEQICEGKGYID 113
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 31.7 bits (73), Expect = 0.23
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-----PFYPDVCELAANSDVL 213
G +GLG +G +A L G V+ +RN E+ A D+
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDIT 61
Query: 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-ID 251
I L D ++V G GV+ +G G ID
Sbjct: 62 IAM--LAD-PAAA--REVC--FGANGVLEGIGGGRGYID 93
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 31.5 bits (72), Expect = 0.28
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 29/111 (26%)
Query: 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAAN 209
+ + L G+ V +VG G+I + K G ++ + P+V+ ++ E A
Sbjct: 23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVA----PTVS----AEINEWEAK 74
Query: 210 SDV----------------LIICCALTDQTHHLINKQVLLALGKKGVIINV 244
+ I+ T+ +NK V K ++N+
Sbjct: 75 GQLRVKRKKVGEEDLLNVFFIVVA--TN--DQAVNKFV-KQHIKNDQLVNM 120
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 31.9 bits (73), Expect = 0.29
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 160 RVGIVGLGSIGS-------EVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDV 212
+VG++G G LE G S S+ P D L + +
Sbjct: 9 KVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSI 68
Query: 213 LIICCALTDQTHHLINKQVLLALGK 237
+I + TH + + L A GK
Sbjct: 69 DLIVIPTPNDTHFPLAQSALAA-GK 92
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 31.5 bits (72), Expect = 0.30
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 176 RLEAFGCCVSYNSRNKKPSVTY----PFYPDVCELAANSDVLIICCALTD-----QTHHL 226
+ F ++ + V Y + P+ ++D+ I C + + H+
Sbjct: 159 PVTCFAMRITAGND----IVVYSADSSYIPEFIPFTKDADLFICECNMYAHQEAAKAGHM 214
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 31.6 bits (72), Expect = 0.30
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 160 RVGIVGLGSIGS------EVAKRLEAFGCCVSYNSRNK---KPSVTYPFYPDVCELAANS 210
++ IVG G +GS A LE G + + + + Y + A+
Sbjct: 7 QLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGL--KIYESYEAVLADE 64
Query: 211 DVLIICCALTDQTHHLINKQVLLALGK 237
V + A + +H + L A GK
Sbjct: 65 KVDAVLIATPNDSHKELAISALEA-GK 90
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 31.4 bits (72), Expect = 0.30
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 159 KRVGIVGLGSIGSEVAKRL-------EAFGCCVSYNSRN--KKPSVTYPFYPDVCELAAN 209
K + I GLG IG+ +A + + G S SR+ + + D AA
Sbjct: 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAAL 66
Query: 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
+DV+I+ + +T I L L + +I + G
Sbjct: 67 ADVIILAVPI-KKTIDFIKILADLDLKEDVIITDAG 101
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 32.0 bits (72), Expect = 0.31
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 155 KLGGKRVGIVGLGSIGSEVAKRLEAFG 181
+ G RV +VG G IG E+ K L G
Sbjct: 14 AVAGGRVLVVGAGGIGCELLKNLVLTG 40
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 31.6 bits (72), Expect = 0.31
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 14/105 (13%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---------SVTYPFYPDVCELAAN 209
+ V I+GLG IG + + L A V +R++ V+ + AA
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE 68
Query: 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG--RGAIIDE 252
++++ + L++ + +V + A+ D
Sbjct: 69 DALIVLAVPM-TAIDSLLDA--VHTHAPNNGFTDVVSVKTAVYDA 110
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 31.4 bits (72), Expect = 0.37
Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 145 PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-----PF 199
+ S +++ +G GS+G +A+RL G + +R + +
Sbjct: 18 LYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATI 77
Query: 200 YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-ID 251
+ A ++D+++ L + + + VL A +GV + G++ +D
Sbjct: 78 HEQARAAARDADIVVSM--LEN-GAVV--QDVLFA---QGVAAAMKPGSLFLD 122
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 31.4 bits (72), Expect = 0.41
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
R+ IVG G IG E+A G V
Sbjct: 144 PQSRLLIVGGGVIGLELAATARTAGVHV 171
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 31.2 bits (71), Expect = 0.44
Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 17/137 (12%)
Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
+SAAD F L I E + + G ++ L +S ++
Sbjct: 101 SFLISAADPFTESDLAFIEGEAVH--------INPLWYGEFPEDLIPVLRRKVMFLSADA 152
Query: 189 RNKKPS-----VTYPFYPDVCELAANSDVLII----CCALTDQTHHLINKQVLLALGKKG 239
+ + Y + + D+ + LT + +++ + G K
Sbjct: 153 QGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRESCRIIRSFGAKI 212
Query: 240 VIINVGRGAIIDEKEMV 256
++ G I+ +
Sbjct: 213 ILATHASGVIVFDGNFY 229
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 31.0 bits (71), Expect = 0.45
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 25/101 (24%)
Query: 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR--NKKPSVTYPFYPDVCELAANSDV--- 212
G +VG+ G G +GS K A G VS +R +KK D +
Sbjct: 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKK--------QDALSMGVKHFYTDP 228
Query: 213 --------LIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
II T + + L L G + VG
Sbjct: 229 KQCKEELDFIISTIPTH---YDLK-DYLKLLTYNGDLALVG 265
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 31.2 bits (71), Expect = 0.46
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF------GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVL 213
R+ ++G G G + + S D + + +V
Sbjct: 12 RLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVE 71
Query: 214 IICCALTDQTHHLINKQVLLALGK 237
+ A TH I + + GK
Sbjct: 72 AVIIATPPATHAEITLAAIAS-GK 94
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 31.0 bits (71), Expect = 0.51
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
R+ ++G G IG EVA V
Sbjct: 148 ADNRLVVIGGGYIGLEVAATAIKANMHV 175
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 31.0 bits (71), Expect = 0.55
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
R+ IVG G IG EVA G V
Sbjct: 142 SATRLLIVGGGLIGCEVATTARKLGLSV 169
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 31.3 bits (70), Expect = 0.55
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 155 KLGGKRVGIVGLGSIGSEVAKRLEAFG 181
K+ V I+GL +G E+AK + G
Sbjct: 24 KMQTSNVLILGLKGLGVEIAKNVVLAG 50
Score = 29.4 bits (65), Expect = 1.8
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
K+ +V +VG G+IG E+ K G +
Sbjct: 421 KKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYI 457
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 30.7 bits (70), Expect = 0.57
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK 192
GK+VG+VG+G +G K A G V + ++
Sbjct: 195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA 229
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7
c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 30.7 bits (70), Expect = 0.57
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------------SVTYPFYPDVCELA 207
++ ++G G++G L G V R +P + +
Sbjct: 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL 61
Query: 208 ANSDVLIICC-------ALTDQTHHLINKQVLLAL 235
A SD+L++ A+ L +L +
Sbjct: 62 ATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLI 96
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 31.0 bits (70), Expect = 0.59
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 138 FVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG 181
F P L +V ++G G +G E+ K L G
Sbjct: 22 FTHPDFEPSTESLQ--FLLDTCKVLVIGAGGLGCELLKNLALSG 63
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural G joint center for structural
genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 30.6 bits (70), Expect = 0.60
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 160 RVGIVGLGSIGSEVAKRLE 178
++ IVG G++G VA+ L
Sbjct: 4 KIAIVGFGTVGQGVAELLI 22
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 30.6 bits (70), Expect = 0.61
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 160 RVGIVGLGSIGSEVAKRLE 178
R+ ++G G++G V + ++
Sbjct: 6 RIILMGTGNVGLNVLRIID 24
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 31.0 bits (71), Expect = 0.61
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
K V ++G G IG E A A G V
Sbjct: 141 DKKHVVVIGAGFIGLEFAATARAKGLEV 168
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 30.9 bits (71), Expect = 0.62
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
G KL R+ I G G+ GS +AK + G V
Sbjct: 215 KGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKV 247
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 30.6 bits (70), Expect = 0.62
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 151 PL---GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR--NKK 192
PL G K G R GI+GLG +G K +A G V+ S K+
Sbjct: 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKR 217
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 30.6 bits (70), Expect = 0.63
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
+G ++ G RV I G G++G+ A+ G V
Sbjct: 229 IGLQVEGARVAIQGFGNVGNAAARAFHDHGARV 261
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 30.8 bits (70), Expect = 0.64
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
+ G K + G G++G + L FG
Sbjct: 238 MTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKC 270
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 30.6 bits (70), Expect = 0.66
Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 36/104 (34%)
Query: 82 RLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCF-VR 140
+L+ AT + RR A+ V +R + D +
Sbjct: 110 KLIWATGG--------DPRRLSCVGADLAGVH--------------AVR--TKEDADRLM 145
Query: 141 QGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
L G K ++G G IG E A L FG V
Sbjct: 146 AELDA-----------GAKNAVVIGGGYIGLEAAAVLTKFGVNV 178
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 30.6 bits (70), Expect = 0.70
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
G K+ ++ + G G++G+ K +E G V
Sbjct: 206 FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKV 238
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 30.3 bits (69), Expect = 0.71
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKKPSVTYPF-------YPDVCELAANSD 211
V ++GLG++G+ +A+ L G V+ +N R+ P V + S
Sbjct: 11 DVSVIGLGAMGTIMAQVLLKQGKRVAIWN-RS--PGKAAALVAAGAHLCESVKAALSASP 67
Query: 212 VLIICCALTDQTHHLINKQVLLALGKKGVIIN 243
I TH ++ + I++
Sbjct: 68 ATIFVLLDNHATHEVLGMPGVARALAHRTIVD 99
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 30.4 bits (69), Expect = 0.73
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVS 185
++ I G G +G E+A+RL A G V+
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVT 30
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.74
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 17/41 (41%)
Query: 37 QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP---VTAEI 74
Q LK +++L L ++ AP + A +
Sbjct: 20 QALKKLQASLKL--------------YADDSAPALAIKATM 46
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 30.4 bits (69), Expect = 0.74
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 160 RVGIVGLGSIG-------SEVAKRLEAFGCCVSYNSRNKKPSVTY--PFYPDVCELAANS 210
R +VG G I + A R E C + K + + ++ A +
Sbjct: 15 RFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQT 74
Query: 211 --DVLIIC 216
D++I+
Sbjct: 75 DADIVILT 82
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 30.2 bits (67), Expect = 0.75
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---------SVTYPFYPDVCE--LAA 208
+ I G G++G + E G V+Y + +V YP + +
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVPYPALAALAKQYATQ 80
Query: 209 NSDVLIICCA 218
+++
Sbjct: 81 LKGKIVVDIT 90
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.8 bits (70), Expect = 0.79
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
G +V I+G G IG + A L G S
Sbjct: 494 GNKVAIIGCGGIGFDTAMYLSQPGESTS 521
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 30.1 bits (67), Expect = 0.81
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
G ++ ++G G++G +A L G V+ +R+
Sbjct: 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRD 51
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 30.3 bits (69), Expect = 0.82
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 160 RVGIVGLGSIGSEVAKRLE 178
+ I GLG++G + + +
Sbjct: 8 NLSIFGLGNVGLNLLRIIR 26
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 30.2 bits (69), Expect = 0.86
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
L + GK V I G+G++G A LE G V
Sbjct: 204 LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKV 236
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 30.2 bits (69), Expect = 0.87
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
G L G RV + GLG +G+ VA E G V
Sbjct: 212 RGLDLRGARVVVQGLGQVGAAVALHAERLGMRV 244
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 30.2 bits (69), Expect = 0.89
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 159 KRVGIVGLGSIGSEVAKRL-------EAFGCCVSYNSRN--KKPSVTYPFYPDVCELAAN 209
+ V IVG+G +G AK L + +G ++ S + + + ++
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 61
Query: 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
S ++ + + K++ L + + + G
Sbjct: 62 SPDFVMLSSPVRTFREIA-KKLSYILSEDATVTDQG 96
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 30.2 bits (69), Expect = 0.90
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 151 PL---GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR--NKK 192
PL G GK +GIVGLG +G K +AFG V+ S +KK
Sbjct: 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKK 224
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 0.94
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 158 GKRVGIVGLG--SIGSEVAKRLEAFGCCV 184
K V I G G SIG+EV + L G V
Sbjct: 476 DKYVLITGAGKGSIGAEVLQGLLQGGAKV 504
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 29.9 bits (68), Expect = 0.96
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 159 KRVGIVGLGSIGSEVAKRL-------EAFGCCVSYNSRN--KKPSVTYPFYPDVCELAAN 209
+ V IVG+G +G AK L + +G ++ S + + + ++
Sbjct: 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 93
Query: 210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
S ++ + + K++ L + + + G
Sbjct: 94 SPDFVMLSSPVRTFREIA-KKLSYILSEDATVTDQG 128
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A
{Thermus thermophilus}
Length = 332
Score = 30.2 bits (69), Expect = 0.97
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 160 RVGIVGLGSIGSEVAKRLE 178
++ ++G G++GS +
Sbjct: 5 KIALLGGGTVGSAFYNLVL 23
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic
transcription repressor, acetylation, carbohydrate
metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A
3v2u_A* 3btu_A
Length = 438
Score = 29.9 bits (67), Expect = 1.1
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 21/97 (21%)
Query: 160 RVGIVGLGSIGSEVAKR-LEAF----------GCCVSYNSRNKK-------PSVTYPFYP 201
RVG VGL + K A + + T +P
Sbjct: 22 RVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATA--FP 79
Query: 202 DVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK 238
+ A++S + +I A+ +H+ + +L K
Sbjct: 80 TLESFASSSTIDMIVIAIQVASHYEVVMPLLEF-SKN 115
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 29.5 bits (67), Expect = 1.1
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCE-LAANSDVLIIC 216
+V I+G + +A+ + + V +++ ++CE A II
Sbjct: 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD----------RELCEEFAKKLKATIIH 49
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 13/88 (14%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF------GCCVSYNSRNKKPSVTY--PFYPDVCELAANSD 211
V +GLG +A C + +K Y + L A D
Sbjct: 7 GVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLARED 66
Query: 212 VLIICCALTDQTHHLINKQVLLAL--GK 237
V ++ + + H + + GK
Sbjct: 67 VEMVIITVPNDKHA---EVIEQCARSGK 91
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 29.9 bits (67), Expect = 1.3
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCEL 206
G+ V +VG S +++ + L Y S + V E+
Sbjct: 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEI 260
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Length = 393
Score = 29.7 bits (67), Expect = 1.4
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 17/94 (18%)
Query: 160 RVGIVGLGSIG---SEVAKRLEAF----------GCCVSYNSRNKKPSVTYPF---YPDV 203
+G++G G +G + ++ + + + + F D
Sbjct: 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADW 86
Query: 204 CELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
L A+ +V ++ +Q H + L A GK
Sbjct: 87 RALIADPEVDVVSVTTPNQFHAEMAIAALEA-GK 119
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 29.6 bits (67), Expect = 1.7
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 96 VVECRRRGVALANAGN---------VFSEDVADYALGLLIDVLRKL 132
+ R +GV L G+ VF + A L + D+L
Sbjct: 426 ISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 29.4 bits (66), Expect = 1.7
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 10/87 (11%)
Query: 160 RVGIVGLGSIGSEVAKR------LEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANS 210
R VGL G ++ + S Y E+ +
Sbjct: 28 RFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDE 87
Query: 211 DVLIICCALTDQTHHLINKQVLLALGK 237
++ +I A + + + GK
Sbjct: 88 NIGLIVSAAVSSERAELAIRAMQH-GK 113
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 29.2 bits (66), Expect = 1.9
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF-------GCCVSYNSRNKKPSVTYP----FYPDVCELAA 208
R+G++G G+IG E R+ +K Y YP+ L A
Sbjct: 4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLA 63
Query: 209 NSDVLIICCALTDQTHHLINKQVLLAL--GK 237
+ +V + H VL A+ K
Sbjct: 64 DENVDAVLVTSWGPAHE---SSVLKAIKAQK 91
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80;
transcription, galactose metabolism, repressor; 2.10A
{Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB:
3e1k_A
Length = 479
Score = 29.3 bits (65), Expect = 1.9
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 160 RVGIVGLGSIGSEVAKR-LEAF----------GCCVSYNSRNKKPSVTYPF-----YPDV 203
RVG VGL S S VAK A + + + +
Sbjct: 41 RVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSL 100
Query: 204 CELAANSDVLIICCALTDQTHHLINKQVLLA 234
A D+ +I ++ H+ + K +L
Sbjct: 101 ESFAQYKDIDMIVVSVKVPEHYEVVKNILEH 131
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 28.9 bits (64), Expect = 2.0
Identities = 13/105 (12%), Positives = 39/105 (37%), Gaps = 13/105 (12%)
Query: 154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTYPFYPDVCE 205
+ +G K V I+G G +G+ + +++ ++ + + D
Sbjct: 7 NDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP---LTDGDG 63
Query: 206 LAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
+DV+++ L D + + ++ + +++ + A
Sbjct: 64 WIDEADVVVLA--LPDNIIEKVAEDIVPRVRPGTIVLILDAAAPY 106
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 29.3 bits (66), Expect = 2.1
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 160 RVGIVGLGSIGSEVAKRL-------EAFGCCVSYNSRNKKPSVTY---PFYPDVCELAAN 209
+VG+VG+G+ E C S R ++ P +V +
Sbjct: 7 KVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQ 66
Query: 210 SDVLIICCALTDQTHHLINKQVLLALGK 237
+ + A Q H + + G
Sbjct: 67 VPLDAVVMAGPPQLHFEMGLLAMSK-GV 93
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 29.1 bits (66), Expect = 2.1
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 159 KRVGIVGLGSIGSEVAKRLE 178
+R+ IVG G+IG+ +AKRLE
Sbjct: 236 RRIMIVGGGNIGASLAKRLE 255
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 29.3 bits (65), Expect = 2.2
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 154 SKLGGKRVGIVGLGSIGSEVAKRL 177
L V ++ + G+E+ K L
Sbjct: 28 EALESAHVCLINATATGTEILKNL 51
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 29.2 bits (66), Expect = 2.2
Identities = 34/228 (14%), Positives = 61/228 (26%), Gaps = 75/228 (32%)
Query: 67 GAPVTAE-ILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLL 125
+P+T + I+ E ++ AT A V + +A V D
Sbjct: 464 ESPMTGDDIVEFGFEH-VITATGATWRTDGVARFHTTALPIAEGMQVLGPD--------- 513
Query: 126 IDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGS--IGSEVAKRLEAFGCC 183
D+ G GK+V + +G VA+ L G
Sbjct: 514 -DLFA----------------------GRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYE 550
Query: 184 VSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN 243
VS + + S +V + + + L + GV
Sbjct: 551 VSIVTPGAQVSSWTNNTFEV--------------------NRIQRR-----LIENGVAR- 584
Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLS 291
+ + +G G+ + E+ D VV+
Sbjct: 585 -----------VTDHAVV-AVGAGGV-TVRDTYASIERELECDAVVMV 619
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 28.9 bits (65), Expect = 2.2
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 152 LGSKLGGKRVGIVGL-GSIGSEVAKRLEAFG 181
L S + R ++G GSIG V K +
Sbjct: 29 LQSVVSQSRFLVLGGAGSIGQAVTKEIFKRN 59
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 28.9 bits (65), Expect = 2.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 158 GKRVGIVGLGSIGSEVA 174
K + I+G G +GSE+A
Sbjct: 180 VKSITIIGGGFLGSELA 196
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 28.7 bits (65), Expect = 2.4
Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 36/130 (27%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELA------------ 207
++G+VGLG IG+ +A L G + SR CE A
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ----------QSTCEKAVERQLVDEAGQD 51
Query: 208 ----ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG--RGAIIDEKEMVGCLLR 261
+ ++ +C + + ++++ L ++ +V + AI + L
Sbjct: 52 LSLLQTAKIIFLCTPI-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEP---ASQLWS 106
Query: 262 GEIGG---AG 268
G IGG AG
Sbjct: 107 GFIGGHPMAG 116
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Length = 262
Score = 28.6 bits (65), Expect = 2.5
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCC-----VSYNSRNKKPSVTYPFYPDVCELAANS 210
+ ++G +GLG +GS +A + Y K ++ Y ELA +
Sbjct: 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNY--MSSNEELARHC 59
Query: 211 DVLIIC 216
D+++
Sbjct: 60 DIIVCA 65
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 28.8 bits (65), Expect = 2.5
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVS----------YNSRNKKPSVTYPFYPDVCELAAN 209
V I+G G++G+ +A L+ + Y + P+ ++
Sbjct: 4 SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIV-VKGYEDVTNT 62
Query: 210 SDVLIICC 217
DV+II
Sbjct: 63 FDVIIIAV 70
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 28.6 bits (64), Expect = 2.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 155 KLGGKRVGIVGLGSIGSEVAK 175
+L RV +VGL +G+E+AK
Sbjct: 33 RLRASRVLLVGLKGLGAEIAK 53
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 28.8 bits (65), Expect = 2.8
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF-------GCCVSYNSRNKKPSVTYP---FYPDVCELAAN 209
R I+GLG +G A+ L C +++ + Y + ++
Sbjct: 10 RAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDT 69
Query: 210 SDVLIICCALTDQTHHLINKQVLLAL--GK 237
++ I H + + A+ G
Sbjct: 70 ENIDAIFIVAPTPFHP---EMTIYAMNAGL 96
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 28.4 bits (64), Expect = 3.2
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF------GCCVSYNSRNKKPSVTY---PFYPDVCELAANS 210
R+G++GLG IG+ A+ L+ R ++ Y D EL +
Sbjct: 4 RIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDP 63
Query: 211 DVLIICCALTDQTHHLINKQVLLAL--GK 237
+V + + TH + V+ K
Sbjct: 64 NVDAVLVCSSTNTHS---ELVIACAKAKK 89
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 28.4 bits (63), Expect = 3.3
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 14/96 (14%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCV--SYNSRNKKPSVTYPFYP----------DVCEL 206
+ +G G +A L +Y+ R P+ + D
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
A +DV++ + + L + V I
Sbjct: 85 IACADVVLSL--VVGAATKAVAASAAPHLSDEAVFI 118
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 28.1 bits (63), Expect = 3.6
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 160 RVGIVGLGSIGSEV-------AKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDV 212
+ IVG+G I + + SR+ + L A +
Sbjct: 27 NLAIVGVGKIVRDQHLPSIAKNANFKLVATA----SRHGTVEGVNSYTTIEAMLDAEPSI 82
Query: 213 LIICCALTDQTHHLINKQVLLALGK 237
+ + Q + + L+A GK
Sbjct: 83 DAVSLCMPPQYRYEAAYKALVA-GK 106
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase,
NADP, pantothenate BIOS PSI-2, protein structure
initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 28.3 bits (64), Expect = 3.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVS 185
+ ++G G+IGS L G CVS
Sbjct: 4 NILVIGTGAIGSFYGALLAKTGHCVS 29
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 27.1 bits (60), Expect = 3.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFG 181
+ +VG G IG +A L+
Sbjct: 6 WNICVVGAGKIGQMIAALLKTSS 28
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 28.3 bits (64), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 144 WPINAEFPLGS-KLGGKRVGIVGLGS 168
WP +AE GKRVG++G G+
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGA 195
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 28.4 bits (64), Expect = 4.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
+ GK + G G +G A L FG V
Sbjct: 209 IAGKTACVCGYGDVGKGCAAALRGFGARV 237
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 28.2 bits (62), Expect = 4.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 159 KRVGIVGLGSIGSEVAKRL 177
V + G G+IG VA +
Sbjct: 2 VNVAVNGYGTIGKRVADAI 20
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 28.2 bits (63), Expect = 4.3
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF-------GCCVSYNSRNKKPSVTY--PFYPDVCELAANS 210
R GI GLG GS + C ++ Y P + + E+ +
Sbjct: 4 RFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHV 63
Query: 211 --DVLIIC 216
D + I
Sbjct: 64 QMDAVYIA 71
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 28.0 bits (63), Expect = 4.8
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 13/88 (14%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF------GCCVSYNSRNKKPSVTY--PFYPDVCELAANSD 211
R+ + G G IG A + A + ++ + E+ A D
Sbjct: 6 RIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDD 65
Query: 212 VLIICCALTDQTHHLINKQVLLAL--GK 237
+ I TH + A+ G
Sbjct: 66 IDGIVIGSPTSTHV---DLITRAVERGI 90
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 28.0 bits (63), Expect = 5.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
GGK+V + G G +G L+A G V
Sbjct: 218 FGGKQVVVCGYGEVGKGCCAALKAMGSIV 246
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 27.6 bits (62), Expect = 5.2
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-----PFYPDVCELAANSDVL 213
K++ +GLG +G+ +A L G ++ + + +DV+
Sbjct: 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 63
Query: 214 IICCALTDQTHHLINKQVL-LALGKKGVIINVGRGAI-ID 251
I L ++ V L L G++ ++ G + ++
Sbjct: 64 ISM--LPA------SQHVEGLYLDDDGLLAHIAPGTLVLE 95
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 27.9 bits (63), Expect = 5.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
G +RV ++G G IG E A L + G +
Sbjct: 144 GKRRVLLLGAGLIGCEFANDLSSGGYQLD 172
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 28.0 bits (63), Expect = 5.5
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 96 VVECRRRGVALANAGN---------VFSEDVADYALGLLIDVLRKLS 133
+ + +R V + AG S D A+ + L ++
Sbjct: 403 IRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVVT 449
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase;
HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3
d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Length = 358
Score = 27.6 bits (62), Expect = 6.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 160 RVGIVGLGSIGSEVAKRLEA 179
V ++G G +GS +L A
Sbjct: 6 NVAVIGAGVVGSAFLDQLLA 25
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB;
SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A
{Bacillus subtilis}
Length = 271
Score = 27.3 bits (61), Expect = 6.7
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
L GK+ ++ EVA++ A +
Sbjct: 130 LKGKKAA-GAATTVYMEVARKYGAKEVIYDNAT 161
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 27.3 bits (61), Expect = 6.8
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF-------GCCVSYNSRNKKPSVTYP----FYPDVCELAA 208
+ GIVG+G IGS+ +RL C R + Y Y D +L
Sbjct: 25 KAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLIN 84
Query: 209 NSDVLIICCALTDQTHHLINKQVLLAL--GK 237
+ DV ++ +++ H + AL K
Sbjct: 85 DKDVEVVIITASNEAHA---DVAVAALNANK 112
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 27.1 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 160 RVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRN 190
RV ++G G++G +A RL G + SR
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 27.2 bits (61), Expect = 7.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC 182
L K V +VG G +G VAK L G
Sbjct: 163 GSLHDKTVLVVGAGEMGKTVAKSLVDRGV 191
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 26.9 bits (60), Expect = 8.1
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 155 KLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNK 191
V ++G G IG+E+AK+ A G V RN
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG 41
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped
dimer, enzyme complex with COFA product, oxidoreductase;
HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP:
a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Length = 436
Score = 27.1 bits (61), Expect = 8.1
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 30/90 (33%)
Query: 155 KLGGKRVGIVGLG------------SIGSEVAKRLEAFGCCVSY---------------- 186
++VG++GL + E+A+ L G +
Sbjct: 310 SHDTRKVGLLGLSFKAGTDDLRESPLV--ELAEMLIGKGYELRIFDRNVEYARVHGANKE 367
Query: 187 NSRNKKPSVTYPFYPDVCELAANSDVLIIC 216
+K P V+ D+ E+ A+SDVL++
Sbjct: 368 YIESKIPHVSSLLVSDLDEVVASSDVLVLG 397
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, PSI-2;
2.60A {Bradyrhizobium japonicum}
Length = 383
Score = 27.1 bits (60), Expect = 8.3
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 27/104 (25%)
Query: 160 RVGIVGLGSIG-----SEVAKRLEAFGCCVSYNSRNKKPSVTYP---------------- 198
R+G++ G G + + + A +N + P
Sbjct: 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKR 65
Query: 199 -----FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
+ D+ A+ + + A T Q + Q + A GK
Sbjct: 66 FNIARWTTDLDAALADKNDTMFFDAATTQARPGLLTQAINA-GK 108
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 27.0 bits (60), Expect = 8.6
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 160 RVGIVGLGSIGSEVAKRLEAF------GCCVSYNSRNKKPSVTYP---FYPDVCELAANS 210
R +GL + G S + K + +P F +L ++
Sbjct: 6 RFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDA 65
Query: 211 DVLIICCALTDQTHHLINKQVLLALGK 237
+ +I CA+ + + L A GK
Sbjct: 66 SIDLIACAVIPCDRAELALRTLDA-GK 91
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 26.9 bits (60), Expect = 9.9
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
+ GK + G G +G A+ L G V
Sbjct: 245 MAGKVAVVCGYGDVGKGSAQSLAGAGARV 273
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.413
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,186,497
Number of extensions: 327549
Number of successful extensions: 1418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1279
Number of HSP's successfully gapped: 217
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)