Query 020161
Match_columns 330
No_of_seqs 148 out of 2956
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194 Membrane glycoprotein 100.0 2E-30 4.3E-35 225.9 2.0 298 21-324 99-441 (873)
2 KOG4194 Membrane glycoprotein 100.0 1.5E-30 3.2E-35 226.7 0.8 299 18-323 143-463 (873)
3 PLN00113 leucine-rich repeat r 99.9 9.9E-26 2.2E-30 223.5 19.2 239 22-263 116-369 (968)
4 PLN00113 leucine-rich repeat r 99.9 1.1E-24 2.4E-29 216.0 18.2 289 18-312 230-584 (968)
5 KOG0444 Cytoskeletal regulator 99.9 1.5E-25 3.4E-30 197.3 -4.8 295 15-315 23-355 (1255)
6 PRK15387 E3 ubiquitin-protein 99.9 1.1E-21 2.4E-26 183.6 17.5 260 24-314 201-460 (788)
7 KOG0444 Cytoskeletal regulator 99.9 9.3E-25 2E-29 192.5 -3.5 284 19-310 50-373 (1255)
8 PRK15387 E3 ubiquitin-protein 99.8 6.8E-20 1.5E-24 171.7 16.7 238 23-286 221-459 (788)
9 KOG0472 Leucine-rich repeat pr 99.8 6.6E-24 1.4E-28 177.8 -10.1 261 46-315 45-313 (565)
10 PLN03210 Resistant to P. syrin 99.8 9.6E-19 2.1E-23 174.8 22.9 277 21-310 586-904 (1153)
11 PRK15370 E3 ubiquitin-protein 99.8 4.7E-19 1E-23 166.9 14.3 246 24-285 178-428 (754)
12 KOG0618 Serine/threonine phosp 99.8 4.7E-21 1E-25 175.7 -1.0 286 18-310 213-511 (1081)
13 KOG4237 Extracellular matrix p 99.8 3.4E-21 7.3E-26 161.3 -6.4 292 27-325 49-372 (498)
14 KOG0472 Leucine-rich repeat pr 99.8 1.2E-21 2.6E-26 164.3 -9.9 260 26-290 47-315 (565)
15 KOG0618 Serine/threonine phosp 99.8 3.8E-20 8.2E-25 169.8 -1.7 283 25-315 46-446 (1081)
16 PLN03210 Resistant to P. syrin 99.7 2.1E-16 4.5E-21 158.2 20.7 253 23-283 610-904 (1153)
17 cd00116 LRR_RI Leucine-rich re 99.7 2.7E-17 5.9E-22 143.3 9.0 249 46-311 23-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 3.1E-16 6.8E-21 147.9 13.3 227 22-264 197-429 (754)
19 KOG4237 Extracellular matrix p 99.7 7.3E-19 1.6E-23 147.4 -4.8 275 1-285 51-359 (498)
20 cd00116 LRR_RI Leucine-rich re 99.6 2E-16 4.4E-21 137.8 6.1 255 14-284 13-319 (319)
21 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.7E-20 114.3 -4.0 160 37-200 24-188 (264)
22 PF14580 LRR_9: Leucine-rich r 99.5 4.2E-14 9E-19 109.9 3.8 127 179-305 13-146 (175)
23 KOG1259 Nischarin, modulator o 99.4 6E-14 1.3E-18 114.4 2.5 134 180-315 279-415 (490)
24 KOG1909 Ran GTPase-activating 99.4 3.6E-14 7.8E-19 117.8 -0.6 109 203-311 182-310 (382)
25 KOG0531 Protein phosphatase 1, 99.4 5.3E-14 1.1E-18 126.5 0.0 266 45-315 48-321 (414)
26 PF14580 LRR_9: Leucine-rich r 99.4 1.2E-13 2.6E-18 107.3 1.8 132 195-328 7-143 (175)
27 KOG0617 Ras suppressor protein 99.3 3.4E-14 7.3E-19 106.7 -3.5 178 111-311 26-211 (264)
28 KOG1909 Ran GTPase-activating 99.3 2.6E-13 5.7E-18 112.7 1.0 245 46-298 30-324 (382)
29 KOG1259 Nischarin, modulator o 99.3 1.8E-12 4E-17 105.9 2.0 123 143-265 286-414 (490)
30 KOG0531 Protein phosphatase 1, 99.2 7.6E-13 1.6E-17 119.0 -0.9 238 44-286 70-319 (414)
31 COG4886 Leucine-rich repeat (L 99.2 6.2E-11 1.3E-15 106.4 7.8 188 100-287 97-292 (394)
32 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.5E-16 106.0 1.5 198 93-311 118-338 (505)
33 KOG3207 Beta-tubulin folding c 99.1 5.1E-12 1.1E-16 108.1 -0.8 198 66-265 118-341 (505)
34 COG4886 Leucine-rich repeat (L 99.1 2E-10 4.3E-15 103.1 7.4 190 50-243 97-292 (394)
35 KOG0532 Leucine-rich repeat (L 99.0 2.9E-11 6.4E-16 106.7 -3.4 200 16-221 42-249 (722)
36 KOG1859 Leucine-rich repeat pr 98.9 3.5E-11 7.5E-16 109.2 -5.7 186 114-313 105-293 (1096)
37 KOG0532 Leucine-rich repeat (L 98.9 2.9E-11 6.3E-16 106.8 -6.2 207 100-309 54-270 (722)
38 KOG4658 Apoptotic ATPase [Sign 98.8 4E-09 8.6E-14 101.9 3.3 126 24-152 523-653 (889)
39 PF13855 LRR_8: Leucine rich r 98.7 6.9E-09 1.5E-13 66.4 2.8 60 46-108 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.7 1.2E-08 2.6E-13 98.7 4.1 214 25-242 546-784 (889)
41 KOG4341 F-box protein containi 98.7 7.6E-10 1.6E-14 94.5 -3.7 277 25-304 139-457 (483)
42 PF13855 LRR_8: Leucine rich r 98.6 5.7E-08 1.2E-12 62.1 3.4 59 69-130 1-61 (61)
43 COG5238 RNA1 Ran GTPase-activa 98.5 1.4E-08 2.9E-13 82.4 0.1 187 46-240 30-254 (388)
44 KOG1859 Leucine-rich repeat pr 98.5 5.6E-10 1.2E-14 101.6 -9.6 205 66-286 81-293 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.5 6.5E-09 1.4E-13 85.3 -3.4 168 46-216 185-373 (419)
46 KOG1644 U2-associated snRNP A' 98.4 4.9E-07 1.1E-11 70.3 6.1 123 26-152 21-151 (233)
47 KOG2982 Uncharacterized conser 98.4 9.2E-08 2E-12 78.6 1.5 80 204-285 197-290 (418)
48 KOG2120 SCF ubiquitin ligase, 98.4 8.8E-09 1.9E-13 84.5 -5.0 171 25-197 186-375 (419)
49 KOG2123 Uncharacterized conser 98.4 3.3E-08 7.2E-13 80.4 -1.9 87 227-315 18-104 (388)
50 KOG2982 Uncharacterized conser 98.3 2.5E-07 5.5E-12 76.1 2.0 171 45-219 70-262 (418)
51 PLN03150 hypothetical protein; 98.3 2.2E-06 4.7E-11 81.1 8.4 102 47-151 419-525 (623)
52 PF12799 LRR_4: Leucine Rich r 98.3 1.7E-06 3.6E-11 50.9 4.1 39 46-84 1-39 (44)
53 PF12799 LRR_4: Leucine Rich r 98.3 1.2E-06 2.7E-11 51.4 3.5 37 251-287 2-39 (44)
54 KOG1644 U2-associated snRNP A' 98.2 3E-06 6.6E-11 66.0 6.0 121 46-172 19-149 (233)
55 COG5238 RNA1 Ran GTPase-activa 98.2 4.8E-06 1E-10 67.9 6.1 198 114-311 26-284 (388)
56 KOG3665 ZYG-1-like serine/thre 98.1 1.4E-06 3.1E-11 82.4 3.4 143 163-307 122-283 (699)
57 KOG4341 F-box protein containi 98.1 1.8E-07 4E-12 80.3 -2.3 272 4-277 144-457 (483)
58 PLN03150 hypothetical protein; 98.1 4.3E-06 9.4E-11 79.2 6.5 102 207-311 419-527 (623)
59 KOG3665 ZYG-1-like serine/thre 98.0 4E-06 8.7E-11 79.5 3.9 128 185-312 122-263 (699)
60 KOG2123 Uncharacterized conser 97.8 7.9E-07 1.7E-11 72.6 -3.6 95 184-278 18-123 (388)
61 KOG2739 Leucine-rich acidic nu 97.8 1.5E-05 3.2E-10 64.8 2.7 106 206-313 43-155 (260)
62 KOG4579 Leucine-rich repeat (L 97.6 5.2E-06 1.1E-10 60.7 -1.6 106 47-156 28-138 (177)
63 PRK15386 type III secretion pr 97.6 0.00055 1.2E-08 60.4 9.9 133 23-173 51-187 (426)
64 PRK15386 type III secretion pr 97.5 0.0012 2.6E-08 58.4 10.8 133 44-195 50-187 (426)
65 KOG2739 Leucine-rich acidic nu 97.4 7.8E-05 1.7E-09 60.6 2.1 102 46-151 43-153 (260)
66 KOG4579 Leucine-rich repeat (L 97.4 3.2E-05 7E-10 56.7 -0.6 106 26-135 29-140 (177)
67 PF13306 LRR_5: Leucine rich r 96.7 0.0076 1.6E-07 44.6 6.8 94 201-302 30-129 (129)
68 KOG1947 Leucine rich repeat pr 96.6 0.00032 6.9E-09 64.7 -1.1 58 117-174 242-306 (482)
69 PF13306 LRR_5: Leucine rich r 96.4 0.013 2.8E-07 43.3 6.6 75 46-126 12-89 (129)
70 PF00560 LRR_1: Leucine Rich R 96.0 0.0022 4.8E-08 31.2 0.4 20 47-66 1-20 (22)
71 KOG4308 LRR-containing protein 96.0 0.00017 3.6E-09 65.7 -6.4 169 119-287 88-305 (478)
72 KOG4308 LRR-containing protein 95.5 0.00027 5.8E-09 64.4 -7.2 217 98-314 89-362 (478)
73 PF13504 LRR_7: Leucine rich r 95.1 0.016 3.4E-07 26.2 1.4 16 47-62 2-17 (17)
74 KOG1947 Leucine rich repeat pr 94.4 0.016 3.4E-07 53.4 1.0 127 183-310 186-332 (482)
75 KOG3763 mRNA export factor TAP 94.2 0.026 5.7E-07 51.2 1.8 85 225-311 215-311 (585)
76 KOG3864 Uncharacterized conser 93.0 0.03 6.5E-07 44.2 0.2 76 208-283 103-187 (221)
77 KOG3864 Uncharacterized conser 90.2 0.1 2.3E-06 41.3 0.5 80 228-310 101-187 (221)
78 smart00370 LRR Leucine-rich re 90.2 0.3 6.5E-06 24.6 2.1 18 271-288 1-18 (26)
79 smart00369 LRR_TYP Leucine-ric 90.2 0.3 6.5E-06 24.6 2.1 18 271-288 1-18 (26)
80 PF13516 LRR_6: Leucine Rich r 87.8 0.42 9.1E-06 23.5 1.5 16 271-286 1-16 (24)
81 smart00364 LRR_BAC Leucine-ric 85.5 0.56 1.2E-05 23.7 1.2 18 46-63 2-19 (26)
82 smart00365 LRR_SD22 Leucine-ri 84.9 0.67 1.4E-05 23.5 1.4 16 272-287 2-17 (26)
83 KOG3763 mRNA export factor TAP 82.0 0.75 1.6E-05 42.2 1.5 79 247-328 215-304 (585)
84 KOG4242 Predicted myosin-I-bin 80.7 9.2 0.0002 34.8 7.6 21 67-87 163-183 (553)
85 smart00368 LRR_RI Leucine rich 79.6 2.3 5E-05 21.8 2.3 15 272-286 2-16 (28)
86 smart00367 LRR_CC Leucine-rich 68.9 7.4 0.00016 19.4 2.6 16 271-286 1-17 (26)
87 KOG4242 Predicted myosin-I-bin 66.8 59 0.0013 29.9 9.1 36 252-287 415-455 (553)
88 KOG0473 Leucine-rich repeat pr 65.8 0.17 3.6E-06 41.1 -5.9 82 45-130 41-123 (326)
89 KOG0473 Leucine-rich repeat pr 61.9 0.18 3.9E-06 41.0 -6.4 87 65-155 38-125 (326)
90 PF05725 FNIP: FNIP Repeat; I 53.1 25 0.00055 20.1 3.2 33 22-54 10-42 (44)
91 TIGR00864 PCC polycystin catio 23.5 56 0.0012 37.0 2.3 29 53-81 2-31 (2740)
No 1
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=2e-30 Score=225.88 Aligned_cols=298 Identities=24% Similarity=0.345 Sum_probs=185.6
Q ss_pred cccCCCcEEeccCcccccCCCCCCC-CCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCC
Q 020161 21 EIDLSNTVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (330)
Q Consensus 21 ~~~~~l~~l~l~~~~l~~~~~~~~~-~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 98 (330)
...++++++++..|.+..+|+.+.. .+|+.|++.+|.|.++.. .+..++.|+.|+++.|.++.+ ....|..-.++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i---~~~sfp~~~ni 175 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI---PKPSFPAKVNI 175 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc---cCCCCCCCCCc
Confidence 3456677777777777777765554 347777777777776654 366777777777777777665 33344444567
Q ss_pred cEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCc
Q 020161 99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSN 173 (330)
Q Consensus 99 ~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~ 173 (330)
++|+|++|.|+.+.. |..+.+|..|.+++|+++.++...+. +++|+.|++..|.+... -.|..+++|+.+.+..|
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 777777777776543 55566777777777777777665555 67777777777655442 23444555555555555
Q ss_pred ccccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--
Q 020161 174 RLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME-- 244 (330)
Q Consensus 174 ~~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~-- 244 (330)
.+..+ ..|..+.++++|+++.|++..+ .+.++.+|+.|+++.|.|... ..|..++.|+.|++++|.++.++
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 44322 1233444555555555544443 344444555555555544443 34455555555555555544431
Q ss_pred ------------------------CCCCCCCCCEEEcCCCCCCCc-----cccccCCCCCeEeCCCCCCCchHHHHHHHh
Q 020161 245 ------------------------GLSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLESIVEAVA 295 (330)
Q Consensus 245 ------------------------~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 295 (330)
.|.++++|++|+|++|.++.. ..+..+++|+.|.+.+|+++.|+ ..++
T Consensus 336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~---krAf 412 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP---KRAF 412 (873)
T ss_pred HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc---hhhh
Confidence 355667778888888776533 34666888888888888888665 5677
Q ss_pred ccccccchhhccCCCccccccccccccCC
Q 020161 296 GSRETLTTIYLENNPCKIFKLFCYPQTNF 324 (330)
Q Consensus 296 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 324 (330)
..++.|+.|+|.+|++.++..-.|.+.++
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m~L 441 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPMEL 441 (873)
T ss_pred ccCcccceecCCCCcceeecccccccchh
Confidence 88888888888888887777666655544
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-30 Score=226.67 Aligned_cols=299 Identities=21% Similarity=0.297 Sum_probs=250.2
Q ss_pred ccccccCCCcEEeccCcccccCCCCCCC--CCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcc
Q 020161 18 QAVEIDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94 (330)
Q Consensus 18 ~~~~~~~~l~~l~l~~~~l~~~~~~~~~--~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 94 (330)
+.....+.++.+|++.|.++.++.-.|+ .++++|++++|.|+.+.. .|..+.+|..|.+++|.++.. +...|++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL---p~r~Fk~ 219 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL---PQRSFKR 219 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc---CHHHhhh
Confidence 4455678899999999999999877777 479999999999998866 488889999999999999886 4556788
Q ss_pred cCCCcEEEccCCcCcCCC--CCCCCCcccEEEccCCCCcCcccccc-ccCCCcEEEccCCCCCCc--ccccCCCCccEEE
Q 020161 95 LAGLEELILRDNKLMKIP--DVSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKNEVPKM--EEIEHFHDLQILE 169 (330)
Q Consensus 95 ~~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~ 169 (330)
+++|+.|+|..|.+.-+. .|..+++|+.|.+..|++..+....+ .+.+++.|+++.|.++.. .++.++.+|+.|+
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 999999999999887554 37889999999999999988775544 489999999999988874 5678899999999
Q ss_pred cCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC
Q 020161 170 FGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK 242 (330)
Q Consensus 170 l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~ 242 (330)
+++|.++ .++....+++|++|+++.|.++.. .|..+..|+.|+++.|.++.+ ..+....+|+.|+++.|.++.
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 9999986 346678889999999999988877 677888999999999999887 568899999999999999875
Q ss_pred C-----cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 243 M-----EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 243 ~-----~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
. ..+.++++|+.|.+.+|++..+ ..+..++.|++|||.+|.|.+|- +.++..+ .|+.|-+..-.+.++.
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq---~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ---PNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred EEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec---ccccccc-hhhhhhhcccceEEec
Confidence 3 3578899999999999999988 67889999999999999999664 6778888 8999888766655554
Q ss_pred cccccccC
Q 020161 316 LFCYPQTN 323 (330)
Q Consensus 316 ~~~~~~~~ 323 (330)
...|...|
T Consensus 456 ql~Wl~qW 463 (873)
T KOG4194|consen 456 QLKWLAQW 463 (873)
T ss_pred cHHHHHHH
Confidence 44444433
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=9.9e-26 Score=223.46 Aligned_cols=239 Identities=26% Similarity=0.287 Sum_probs=139.1
Q ss_pred ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCC-ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
...++++|+++++.+.+..+...+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP---NSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC---hhhhhCcCCCe
Confidence 34455555555555554333344566666666666665 455556677777777777776665432 23455667777
Q ss_pred EEccCCcCcC-CCC-CCCCCcccEEEccCCCCcCc-cccccccCCCcEEEccCCCCCC--cccccCCCCccEEEcCCccc
Q 020161 101 LILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSS-HGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 101 L~l~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~ 175 (330)
|++++|.+.+ +|. +..+++|++|++++|.+.+. +.....+++|+.|++++|.+.+ +..+..+++|+.|++++|.+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 7777766653 343 56666777777777666542 2223345667777777666554 23456666677777766665
Q ss_pred c--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC-C-cCC
Q 020161 176 R--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-M-EGL 246 (330)
Q Consensus 176 ~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~-~-~~~ 246 (330)
. .+..+..+++|+.|++++|.+.+. .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+ + ..+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 3 334455666666666666665433 345556666666666665543 234455666666666666553 2 234
Q ss_pred CCCCCCCEEEcCCCCCC
Q 020161 247 STLVNLHVLDVSSNKLT 263 (330)
Q Consensus 247 ~~~~~L~~L~l~~n~~~ 263 (330)
..+++|+.|++++|+++
T Consensus 353 ~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLT 369 (968)
T ss_pred hCCCCCcEEECCCCeeE
Confidence 44555555666555554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.1e-24 Score=215.99 Aligned_cols=289 Identities=22% Similarity=0.237 Sum_probs=157.7
Q ss_pred ccccccCCCcEEeccCcccccC-C-CCCCCCCcCEEecCCCCCC-ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcc
Q 020161 18 QAVEIDLSNTVLDLTSFQLHDL-D-SVEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94 (330)
Q Consensus 18 ~~~~~~~~l~~l~l~~~~l~~~-~-~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 94 (330)
..+....++++|+++++.+.+. | .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+. .+..
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~ 306 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE---LVIQ 306 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh---hHcC
Confidence 3344556777788777776643 2 2334567777777777666 4555666677777777777666554322 2344
Q ss_pred cCCCcEEEccCCcCcC-CCC-CCCCCcccEEEccCCCCcCcc-ccccccCCCcEEEccCCCC------------------
Q 020161 95 LAGLEELILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNEV------------------ 153 (330)
Q Consensus 95 ~~~L~~L~l~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~------------------ 153 (330)
+++|++|++++|.+.+ +|. +..+++|+.|++++|.+.+.. .....+++|+.|++++|.+
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 5566666666665543 222 445555555555555554322 1122234444444444433
Q ss_pred ------CC--cccccCCCCccEEEcCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcc------------
Q 020161 154 ------PK--MEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCI------------ 208 (330)
Q Consensus 154 ------~~--~~~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L------------ 208 (330)
.+ +..+..+++|+.|++++|.++ .+..+..++.|+.|++++|.+.+. .+..+++|
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 22 122344555556666555543 223344555555555555544432 12233444
Q ss_pred -----------cEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccC
Q 020161 209 -----------KKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNL 271 (330)
Q Consensus 209 -----------~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~ 271 (330)
+.|++++|.+++. ..+..++.|+.|++++|.+.+. +.+..+++|+.|++++|.+++. ..+..+
T Consensus 467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 4444444444333 1234455566666666655542 2455666777777777777655 456667
Q ss_pred CCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161 272 SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312 (330)
Q Consensus 272 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 312 (330)
++|+.|++++|++.. .++..+..+++|+.+++++|++.
T Consensus 547 ~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 547 PVLSQLDLSQNQLSG---EIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ccCCEEECCCCcccc---cCChhHhcCcccCEEeccCCcce
Confidence 777777777777662 22344556677777777777754
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.5e-25 Score=197.34 Aligned_cols=295 Identities=25% Similarity=0.329 Sum_probs=161.1
Q ss_pred CCcccccccCCCcEEeccCcccccCC-CCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhc
Q 020161 15 NPDQAVEIDLSNTVLDLTSFQLHDLD-SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWD 93 (330)
Q Consensus 15 ~~~~~~~~~~~l~~l~l~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 93 (330)
.++..+..+.+.+.|.+.+.++..+| .+..+.+|++|++++|++.++...+..+|.|+.+.+..|.+..... +..+.
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGi--P~diF 100 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGI--PTDIF 100 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCC--Cchhc
Confidence 35666666777777777777776665 2344556666666666665555555555555555555554443321 12333
Q ss_pred ccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCCCCCCc-ccccCCCCccEEEc
Q 020161 94 ALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEVPKM-EEIEHFHDLQILEF 170 (330)
Q Consensus 94 ~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l 170 (330)
.+..|+.|+++.|++..+|. +....++-.|++++|.+..++...+. +..|-.|++++|.+..+ +....+..|+.|.+
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 44555555555555555553 44445555555555555544433222 33444445555544442 23334444444444
Q ss_pred CCcccc---------------------------ccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCccccc
Q 020161 171 GSNRLR---------------------------VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSM 221 (330)
Q Consensus 171 ~~~~~~---------------------------~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~ 221 (330)
++|++. .+.++..+.+|..++++.|.+..+ .+....+|+.|++++|+++..
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee
Confidence 444332 233444455566666666665555 344556666666666666655
Q ss_pred -cccccccccceEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCC--Cc-cccccCCCCCeEeCCCCCCCchHHHHHHHhc
Q 020161 222 -KGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLT--LV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAG 296 (330)
Q Consensus 222 -~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~--~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 296 (330)
.......+|++|+++.|+++.+| .+..+++|+.|-+.+|+++ ++ +.++.+.+|+.+...+|.+.-+| .-+-
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP----Eglc 336 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP----EGLC 336 (1255)
T ss_pred eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc----hhhh
Confidence 23344566666666666666654 3556666666666666554 33 44555555566565555554332 3355
Q ss_pred cccccchhhccCCCccccc
Q 020161 297 SRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 297 ~~~~L~~l~l~~n~~~~~~ 315 (330)
+|++|++|.|+.|++..++
T Consensus 337 RC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred hhHHHHHhcccccceeech
Confidence 6777777777777765543
No 6
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=1.1e-21 Score=183.59 Aligned_cols=260 Identities=28% Similarity=0.286 Sum_probs=193.6
Q ss_pred CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
.....|+++++.+..+|. .++++|+.|++++|+++.+|. ..++|++|++++|.++... . ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP-~------lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-V------LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCccc-C------cccccceeec
Confidence 456788999999998886 556789999999999998875 3588999999999888642 1 1367889999
Q ss_pred cCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccC
Q 020161 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN 183 (330)
Q Consensus 104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 183 (330)
++|.++.+|. ...+|+.|++++|++..++. .+++|+.|++++|.+..+..+ ...|+.|++++|.++.++.+.
T Consensus 270 s~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~lp- 341 (788)
T PRK15387 270 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTLP- 341 (788)
T ss_pred cCCchhhhhh--chhhcCEEECcCCccccccc---cccccceeECCCCccccCCCC--cccccccccccCccccccccc-
Confidence 9888887775 23578888898888887664 246788999988888775432 345777888888876544322
Q ss_pred CCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161 184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263 (330)
Q Consensus 184 ~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 263 (330)
..|+.|++++|.+...+. ...++..|++++|.++..+.. +..|+.|++++|.+++++.. .++|+.|++++|+++
T Consensus 342 -~~Lq~LdLS~N~Ls~LP~-lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 342 -SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLT 415 (788)
T ss_pred -cccceEecCCCccCCCCC-CCcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCC
Confidence 468888888888876532 245788888888888877643 35788888888888877643 357888888888888
Q ss_pred CccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161 264 LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 264 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
.++.+ ..+|+.|++++|+++.+|.. +.++++|+.|+|++|++.+.
T Consensus 416 sIP~l--~~~L~~L~Ls~NqLt~LP~s----l~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 416 SLPML--PSGLLSLSVYRNQLTRLPES----LIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCcc--hhhhhhhhhccCcccccChH----HhhccCCCeEECCCCCCCch
Confidence 77532 34677888888888876532 45678888888888887654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=9.3e-25 Score=192.47 Aligned_cols=284 Identities=23% Similarity=0.308 Sum_probs=200.7
Q ss_pred cccccCCCcEEeccCcccccC-CCCCCCCCcCEEecCCCCCC--ChhhhhhcCCCCCEEeCCCCcCCccccccchhhccc
Q 020161 19 AVEIDLSNTVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95 (330)
Q Consensus 19 ~~~~~~~l~~l~l~~~~l~~~-~~~~~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 95 (330)
.....-+++.|.++.|++.++ ..+.-++.|+.+.++.|++. ++|..+.++..|++|++++|++... +..+..-
T Consensus 50 EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev----P~~LE~A 125 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV----PTNLEYA 125 (1255)
T ss_pred HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc----chhhhhh
Confidence 333445566666666665553 33445566666666666555 5666666666666666666665552 2233444
Q ss_pred CCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCC--------------------
Q 020161 96 AGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEV-------------------- 153 (330)
Q Consensus 96 ~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------- 153 (330)
+++-.|++++|+|..||. +-+++.|-+|++++|++..+++....+..|+.|.+++|.+
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 555666666666666654 4445555566666665555555444444445555555432
Q ss_pred ----CC---cccccCCCCccEEEcCCcccc-ccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCcccccc-
Q 020161 154 ----PK---MEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK- 222 (330)
Q Consensus 154 ----~~---~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~- 222 (330)
+- +..+..+.+|..++++.|.+. .++.+..+++|+.|++++|.++.. ....+.++++|+++.|+++..|
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchH
Confidence 21 233556678888899988886 556788899999999999999987 5567789999999999999996
Q ss_pred ccccccccceEEccCCCCC--CCc-CCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccc
Q 020161 223 GFEECIALEELYLSHNGIS--KME-GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298 (330)
Q Consensus 223 ~~~~~~~L~~l~l~~~~~~--~~~-~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 298 (330)
.+-+++.|+.|...+|+++ ++| ++..+..|+++..++|.+.-. +.+..|.+|+.|.|+.|.+.++|+. +.-+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPea----IHlL 361 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEA----IHLL 361 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhh----hhhc
Confidence 4667899999999998765 554 577888999999999999877 7789999999999999999988754 3446
Q ss_pred cccchhhccCCC
Q 020161 299 ETLTTIYLENNP 310 (330)
Q Consensus 299 ~~L~~l~l~~n~ 310 (330)
+.|++||+.+|+
T Consensus 362 ~~l~vLDlreNp 373 (1255)
T KOG0444|consen 362 PDLKVLDLRENP 373 (1255)
T ss_pred CCcceeeccCCc
Confidence 889999999998
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=6.8e-20 Score=171.66 Aligned_cols=238 Identities=27% Similarity=0.340 Sum_probs=195.2
Q ss_pred cCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161 23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 102 (330)
..+++.|++.+|++..+|. .+++|++|++++|.++++|.. .++|+.|++++|.+.... . ..+.|+.|+
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp-----~--lp~~L~~L~ 288 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLP-----A--LPSGLCKLW 288 (788)
T ss_pred hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhh-----h--chhhcCEEE
Confidence 3578999999999999885 478999999999999998753 468999999999887631 1 236789999
Q ss_pred ccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccccccc
Q 020161 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQ 182 (330)
Q Consensus 103 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 182 (330)
+++|.++.+|. ..++|+.|++++|.+..++.. ..+|..|++.+|.+..++.+ ..+|+.|++++|.++.++.+
T Consensus 289 Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~l- 360 (788)
T PRK15387 289 IFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLPTL- 360 (788)
T ss_pred CcCCccccccc--cccccceeECCCCccccCCCC---cccccccccccCcccccccc--ccccceEecCCCccCCCCCC-
Confidence 99999998885 347899999999999887653 45688899999998775432 25899999999998765443
Q ss_pred CCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCC
Q 020161 183 NLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262 (330)
Q Consensus 183 ~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~ 262 (330)
.+.|+.|++++|.+...+- ...+|+.|++++|.++..+.. .+.|+.|++++|.++.+|.+ ..+|+.|++++|++
T Consensus 361 -p~~L~~L~Ls~N~L~~LP~-l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqL 434 (788)
T PRK15387 361 -PSELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQL 434 (788)
T ss_pred -CcccceehhhccccccCcc-cccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcc
Confidence 3578899999999887632 236799999999999987653 47899999999999988754 35789999999999
Q ss_pred CCc-cccccCCCCCeEeCCCCCCCc
Q 020161 263 TLV-DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 263 ~~~-~~~~~~~~L~~L~l~~n~l~~ 286 (330)
+.+ ..+..+++|+.|++++|+++.
T Consensus 435 t~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 435 TRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cccChHHhhccCCCeEECCCCCCCc
Confidence 988 567889999999999999994
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=6.6e-24 Score=177.80 Aligned_cols=261 Identities=28% Similarity=0.403 Sum_probs=218.7
Q ss_pred CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEEE
Q 020161 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFD 124 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~ 124 (330)
..++.+.+++|.+..+...+..+..|.++++++|+.+. .+++++.+..+..++.+.+.+..+|+ +....++++++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~----lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQ----LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhh----CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 57889999999999888888999999999999998887 44556677888889999999998886 78888999999
Q ss_pred ccCCCCcCccccccccCCCcEEEccCCCCCC-cccccCCCCccEEEcCCcccc-ccccccCCCCCcEEECcCCCcccc--
Q 020161 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVV-- 200 (330)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~-- 200 (330)
++.|.+..+++..+.+..++.++..+|.+.. +.++..+.++..+++.+|++. .++....++.|+++++..|.++..
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~ 200 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPP 200 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCCh
Confidence 9999998888877778888889888888877 466778888888899888875 444555588899999988887776
Q ss_pred ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeE
Q 020161 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDL 277 (330)
Q Consensus 201 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L 277 (330)
.++++.+|+-|.+..|++...|.|..|..|.++.+..|.+.-++ ..++++++.+|+++.|+++.. +.+.-+.+|++|
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL 280 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence 78888899999999999999999999999999999999888774 467888999999999999988 667778889999
Q ss_pred eCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 278 WLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 278 ~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
|+++|.|+.++ .-++++ +|+.|-+.|||++.+.
T Consensus 281 DlSNN~is~Lp----~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 281 DLSNNDISSLP----YSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred cccCCccccCC----cccccc-eeeehhhcCCchHHHH
Confidence 99999998765 335666 7999999999976654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=9.6e-19 Score=174.79 Aligned_cols=277 Identities=19% Similarity=0.220 Sum_probs=172.6
Q ss_pred cccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 21 ~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
..+.+++.|++.++.+..+|....+.+|++|+++++.+..++..+..+++|+.|+++++..... ++.+..+++|++
T Consensus 586 ~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~----ip~ls~l~~Le~ 661 (1153)
T PLN03210 586 YLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE----IPDLSMATNLET 661 (1153)
T ss_pred hcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc----CCccccCCcccE
Confidence 3456788888888888888876667899999999999888888788899999999988754332 234566788999
Q ss_pred EEccCC-cCcCCCC-CCCCCcccEEEccCCC-CcCccccccccCCCcEEEccCCCCCC-cccccCCCCccEEEcCCcccc
Q 020161 101 LILRDN-KLMKIPD-VSIFKKLSVFDVSFNE-ITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRLR 176 (330)
Q Consensus 101 L~l~~~-~l~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 176 (330)
|++++| .+..+|. +..+++|+.|++++|. +..++.. ..+.+|+.|++++|.... +. ....+|+.|+++++.+.
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-INLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETAIE 738 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-CCCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCccc
Confidence 999887 4556765 7788888888888864 4444432 246778888888774322 11 12346677777776654
Q ss_pred ccccccCC-------------------------------CCCcEEECcCCCccc-c--ccCCCCcccEEECCCC-ccccc
Q 020161 177 VMENLQNL-------------------------------TNLQELWLGRNRIKV-V--NLCGLKCIKKISLQSN-RLTSM 221 (330)
Q Consensus 177 ~~~~l~~~-------------------------------~~L~~L~l~~~~i~~-~--~~~~~~~L~~L~l~~~-~l~~~ 221 (330)
.++....+ ++|+.|++++|.... . .+..+++|+.|++++| .+...
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 32221122 345555555543211 1 3445556666666654 34444
Q ss_pred cccccccccceEEccCCCC-CCCcCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCC-CCchHHHHHHHhccc
Q 020161 222 KGFEECIALEELYLSHNGI-SKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQ-IESLESIVEAVAGSR 298 (330)
Q Consensus 222 ~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~ 298 (330)
|....+++|+.|++++|.. ..++.. ..+|+.|++++|.++.+ ..+..+++|+.|++++|+ ++.++ .....+
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~----~~~~~L 892 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS----LNISKL 892 (1153)
T ss_pred CCCCCccccCEEECCCCCcccccccc--ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC----cccccc
Confidence 4333455666666665532 222221 24666777777776666 345667777777777743 44432 123455
Q ss_pred cccchhhccCCC
Q 020161 299 ETLTTIYLENNP 310 (330)
Q Consensus 299 ~~L~~l~l~~n~ 310 (330)
++|+.+++++|.
T Consensus 893 ~~L~~L~l~~C~ 904 (1153)
T PLN03210 893 KHLETVDFSDCG 904 (1153)
T ss_pred cCCCeeecCCCc
Confidence 666666666654
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=4.7e-19 Score=166.86 Aligned_cols=246 Identities=19% Similarity=0.222 Sum_probs=158.7
Q ss_pred CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
.+..+|++++.+++.+|. ..++.++.|++++|.++++|..+. ++|+.|++++|.+... |. .+ .+.|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsL-P~---~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA-CIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSI-PA---TL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccC-Ch---hh--hccccEEEC
Confidence 456788888888888875 457789999999999998887653 5899999999988753 21 11 257889999
Q ss_pred cCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccC
Q 020161 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN 183 (330)
Q Consensus 104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 183 (330)
++|.+..+|.. ...+|+.|++++|++..++.. .+.+|+.|++++|.+..+... -..+|+.|++++|.++.++. .-
T Consensus 249 s~N~L~~LP~~-l~s~L~~L~Ls~N~L~~LP~~--l~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~LP~-~l 323 (754)
T PRK15370 249 SINRITELPER-LPSALQSLDLFHNKISCLPEN--LPEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTALPE-TL 323 (754)
T ss_pred cCCccCcCChh-HhCCCCEEECcCCccCccccc--cCCCCcEEECCCCccccCccc-chhhHHHHHhcCCccccCCc-cc
Confidence 99988888751 235788999998888766542 235788888888877664321 12356777777776653321 11
Q ss_pred CCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161 184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263 (330)
Q Consensus 184 ~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 263 (330)
.++|+.|++++|.+...+-.-+++|+.|++++|+++..|.. -++.|+.|++++|.++.++.-. ...|+.|++++|+++
T Consensus 324 ~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~-lp~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~ 401 (754)
T PRK15370 324 PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPET-LPPTITTLDVSRNALTNLPENL-PAALQIMQASRNNLV 401 (754)
T ss_pred cccceeccccCCccccCChhhcCcccEEECCCCCCCcCChh-hcCCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcc
Confidence 24667777777666555333335666777776666655421 1356666666666666554211 124666666666666
Q ss_pred Ccc-----ccccCCCCCeEeCCCCCCC
Q 020161 264 LVD-----DIQNLSRLEDLWLNDNQIE 285 (330)
Q Consensus 264 ~~~-----~~~~~~~L~~L~l~~n~l~ 285 (330)
.++ .....+.+..+++.+|++.
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 541 1223355666666666665
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=4.7e-21 Score=175.69 Aligned_cols=286 Identities=26% Similarity=0.277 Sum_probs=228.8
Q ss_pred ccccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCC
Q 020161 18 QAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97 (330)
Q Consensus 18 ~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 97 (330)
+.....++++.|+...+.++.......+.++++++++.+.++.+|..+..+.+|+.++..+|.++. .+..+...+.
T Consensus 213 ~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~----lp~ri~~~~~ 288 (1081)
T KOG0618|consen 213 ELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA----LPLRISRITS 288 (1081)
T ss_pred eEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHh----hHHHHhhhhh
Confidence 333445666666666666666555667789999999999999999889999999999999999965 3344566789
Q ss_pred CcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccc--cCCCcEEEccCCCCCCcccc--cCCCCccEEEcCC
Q 020161 98 LEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNV--TDTLKELYVSKNEVPKMEEI--EHFHDLQILEFGS 172 (330)
Q Consensus 98 L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~ 172 (330)
|+.|.+..|.+..+|+ .....+|++|++..|.+..++..... ...++.++.+.+.+...... ...+.|+.|.+.+
T Consensus 289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 9999999999999987 55599999999999999988875433 33467777777777664322 3456788899999
Q ss_pred cccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc-ccccccccceEEccCCCCCCCcCC
Q 020161 173 NRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEGL 246 (330)
Q Consensus 173 ~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~ 246 (330)
|.++ .++-+.+..+|+.|+++.|++..+ .+..++.|+.|++++|+++.++ .+..|..|++|....|.+..+|.+
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~ 448 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPEL 448 (1081)
T ss_pred CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhh
Confidence 9885 446678889999999999988766 6788889999999999999985 577899999999999999999999
Q ss_pred CCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161 247 STLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (330)
Q Consensus 247 ~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 310 (330)
..++.|+.+|++.|+++.. +.....++|++||+++|.-...+ ...++.+.++..++++-++
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d---~~~l~~l~~l~~~~i~~~~ 511 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD---HKTLKVLKSLSQMDITLNN 511 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccc---hhhhHHhhhhhheecccCC
Confidence 9999999999999999876 32223389999999999855443 3446667778887777763
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=3.4e-21 Score=161.27 Aligned_cols=292 Identities=21% Similarity=0.266 Sum_probs=204.7
Q ss_pred cEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (330)
Q Consensus 27 ~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (330)
-..++++..+..+|. ..|+..+++.+..|+|++||+. |+.+++|+.|++++|.|+.+. ..+|..+++|..|.+.+
T Consensus 49 ~~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~---p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA---PDAFKGLASLLSLVLYG 124 (498)
T ss_pred ceEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcC---hHhhhhhHhhhHHHhhc
Confidence 556778888888886 7889999999999999999985 999999999999999999984 45777888888887766
Q ss_pred -CcCcCCCC--CCCCCcccEEEccCCCCcCcccccc-ccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccc-c--
Q 020161 106 -NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRL-R-- 176 (330)
Q Consensus 106 -~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~-~-- 176 (330)
|+|+.+|. +..+.+++.|.+.-|++..+..... .++.+..|.+..|.+..+. .+..+..++.+.+..|.+ .
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 89999885 8888999999999998887765433 3788888888888777652 466777777777766552 1
Q ss_pred cc-----------ccccCCCCCcEEECcCCCccccccCCC-CcccEE---ECCCC-ccccc--cccccccccceEEccCC
Q 020161 177 VM-----------ENLQNLTNLQELWLGRNRIKVVNLCGL-KCIKKI---SLQSN-RLTSM--KGFEECIALEELYLSHN 238 (330)
Q Consensus 177 ~~-----------~~l~~~~~L~~L~l~~~~i~~~~~~~~-~~L~~L---~l~~~-~l~~~--~~~~~~~~L~~l~l~~~ 238 (330)
.+ ..++.........+...++.....+.+ .+++.+ -.+.+ ..... ..+..+++|+.+++++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 00 011111111111111111211110000 011111 11112 11111 23677888888888888
Q ss_pred CCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161 239 GISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 239 ~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
.++.+ .+|.+.+.+++|.+..|++..+ ..+..+..|+.|+|.+|+|+.+. +.++....+|..|.+-.||+.+.
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~---~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA---PGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe---cccccccceeeeeehccCcccCc
Confidence 88887 3678888888899988888877 66788888888999999988654 56677778888888888888777
Q ss_pred ccccccccCCC
Q 020161 315 KLFCYPQTNFP 325 (330)
Q Consensus 315 ~~~~~~~~~~p 325 (330)
....|...|+-
T Consensus 362 C~l~wl~~Wlr 372 (498)
T KOG4237|consen 362 CRLAWLGEWLR 372 (498)
T ss_pred cchHHHHHHHh
Confidence 77777766654
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.2e-21 Score=164.33 Aligned_cols=260 Identities=25% Similarity=0.331 Sum_probs=216.9
Q ss_pred CcEEeccCcccccC-CCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161 26 NTVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (330)
Q Consensus 26 l~~l~l~~~~l~~~-~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (330)
+..+.++.+.+..+ +.+..+..++++++.+|++..+|+.++.+..++.++.+.|++.. .+.+++....+.+++++
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~----lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE----LPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh----ccHHHhhhhhhhhhhcc
Confidence 56677777777665 45566788999999999999999999999999999999998877 34566778889999999
Q ss_pred CCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccc-ccccc
Q 020161 105 DNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLR-VMENL 181 (330)
Q Consensus 105 ~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~l 181 (330)
.+.+..+++ ++.+-.+..++..+|.+...++....+.++..+++.+|.+... ...-.++.|++++...|-++ .++.+
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l 202 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL 202 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence 998888775 8888888899999999988888777788888899998887773 33444888899998888875 56788
Q ss_pred cCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc-CCCCCCCCCEEEc
Q 020161 182 QNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-GLSTLVNLHVLDV 257 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l 257 (330)
+.+.+|..|++..|.+... .|.+|+.|..+.++.|++...+ ...+++++..+|+++|++.++| ...-+.+|.+|++
T Consensus 203 g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL 282 (565)
T ss_pred cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence 8899999999999998887 8889999999999999988875 3567889999999999999975 4667788999999
Q ss_pred CCCCCCCc-cccccCCCCCeEeCCCCCCCchHHH
Q 020161 258 SSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESI 290 (330)
Q Consensus 258 ~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~ 290 (330)
|+|.++.+ ..++++ +|+.|.+.+|++.++-..
T Consensus 283 SNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 283 SNNDISSLPYSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred cCCccccCCcccccc-eeeehhhcCCchHHHHHH
Confidence 99999999 668888 999999999999987543
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=3.8e-20 Score=169.83 Aligned_cols=283 Identities=28% Similarity=0.397 Sum_probs=165.5
Q ss_pred CCcEEeccCcccccCCC-CCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 25 SNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~-~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
.++.||++++++..+|. +...++|+.|+++.|.|.+.|.+...+++|+++.+.+|.... .+..+..+++|++|++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~----lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQS----LPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhc----CchhHHhhhccccccc
Confidence 37888888888777763 444566666666666666666666666666666666665554 2334455666666666
Q ss_pred cCCcCcCCCC-CCCCC----------------------------------------cccE-EEccCCCCcCc--------
Q 020161 104 RDNKLMKIPD-VSIFK----------------------------------------KLSV-FDVSFNEITSS-------- 133 (330)
Q Consensus 104 ~~~~l~~~~~-~~~~~----------------------------------------~L~~-L~l~~~~~~~~-------- 133 (330)
+.|.+..+|. +..+. .+++ +++..|.+...
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l 201 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANL 201 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccch
Confidence 6666655442 11111 1222 33333333200
Q ss_pred ----------cccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc-ccccccCCCCCcEEECcCCCcccc--
Q 020161 134 ----------HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVV-- 200 (330)
Q Consensus 134 ----------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~-- 200 (330)
..+....++++.|+...|.++.........++++++++.+.+. .++.+..+.+|+.++...|.+...
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ 281 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPL 281 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHH
Confidence 0001112334444444444443333344456777777776664 334456667777777666654332
Q ss_pred -----------------------ccCCCCcccEEECCCCccccccc--c-------------------------cccccc
Q 020161 201 -----------------------NLCGLKCIKKISLQSNRLTSMKG--F-------------------------EECIAL 230 (330)
Q Consensus 201 -----------------------~~~~~~~L~~L~l~~~~l~~~~~--~-------------------------~~~~~L 230 (330)
...+..+|++|++..|++...|. + ...+.|
T Consensus 282 ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 282 RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAAL 361 (1081)
T ss_pred HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHH
Confidence 23345667777777776654421 0 012235
Q ss_pred ceEEccCCCCCC--CcCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhc
Q 020161 231 EELYLSHNGISK--MEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL 306 (330)
Q Consensus 231 ~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l 306 (330)
+.|++.+|.+++ +|.+.+.++|++|++++|++..+ ..+.+++.|++|+|++|+++.+++. +..|+.|+.|..
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t----va~~~~L~tL~a 437 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT----VANLGRLHTLRA 437 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH----HHhhhhhHHHhh
Confidence 555666666665 35667778888888888888766 4567778888888888888877533 445677888888
Q ss_pred cCCCccccc
Q 020161 307 ENNPCKIFK 315 (330)
Q Consensus 307 ~~n~~~~~~ 315 (330)
.+|.+...+
T Consensus 438 hsN~l~~fP 446 (1081)
T KOG0618|consen 438 HSNQLLSFP 446 (1081)
T ss_pred cCCceeech
Confidence 888776654
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=2.1e-16 Score=158.22 Aligned_cols=253 Identities=21% Similarity=0.233 Sum_probs=161.7
Q ss_pred cCCCcEEeccCcccccCCC-CCCCCCcCEEecCCCC-CCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 23 DLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANR-LTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~-~~~~~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
..++++|++.++.+..++. ...+++|+.|+++++. +..+|. +..+++|+.|++++|......| ..+..+++|+.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp---~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP---SSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc---hhhhccCCCCE
Confidence 3566777777666666542 3345667777776653 444543 5566667777776654333322 23445666666
Q ss_pred EEccCC-cCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCccc---------------------
Q 020161 101 LILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE--------------------- 158 (330)
Q Consensus 101 L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------- 158 (330)
|++++| .+..+|....+++|++|++++|......+ ....+|+.|++.++.+..++.
T Consensus 686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 686 LDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred EeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence 666665 45555543355666666666653221111 113345555555554333211
Q ss_pred ----------ccCCCCccEEEcCCccc--cccccccCCCCCcEEECcCCC-cccc-ccCCCCcccEEECCCCc-cccccc
Q 020161 159 ----------IEHFHDLQILEFGSNRL--RVMENLQNLTNLQELWLGRNR-IKVV-NLCGLKCIKKISLQSNR-LTSMKG 223 (330)
Q Consensus 159 ----------~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~-i~~~-~~~~~~~L~~L~l~~~~-l~~~~~ 223 (330)
...+++|+.|++++|.. ..+..++++++|+.|++++|. +... ....+++|+.|++++|. +...+.
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 12235788888887753 355678899999999999874 4444 22367899999999884 443333
Q ss_pred cccccccceEEccCCCCCCCc-CCCCCCCCCEEEcCCC-CCCCc-cccccCCCCCeEeCCCCC
Q 020161 224 FEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSN-KLTLV-DDIQNLSRLEDLWLNDNQ 283 (330)
Q Consensus 224 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~L~~L~l~~n~ 283 (330)
. ..+++.|++++|.++.+| ++..+++|+.|++++| +++.+ .....+++|+.+++++|.
T Consensus 844 ~--~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 844 I--STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c--ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 2 468999999999999876 5778899999999996 56666 456778899999999996
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.7e-17 Score=143.26 Aligned_cols=249 Identities=23% Similarity=0.263 Sum_probs=144.1
Q ss_pred CCcCEEecCCCCCC-----ChhhhhhcCCCCCEEeCCCCcCCc--cccc-cchhhcccCCCcEEEccCCcCcCC-CC-CC
Q 020161 46 TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDD--AAIE-PISRWDALAGLEELILRDNKLMKI-PD-VS 115 (330)
Q Consensus 46 ~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~~~~~L~~L~l~~~~l~~~-~~-~~ 115 (330)
+.|++++++++.++ .++..+...++|+.++++++.+.. .... ....+..+++|++|++++|.+... +. +.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 45777777777764 234445566677777777766552 1000 012344466777777776666521 11 11
Q ss_pred CC---CcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCC-CCccEEEcCCcccc------ccccccCCC
Q 020161 116 IF---KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF-HDLQILEFGSNRLR------VMENLQNLT 185 (330)
Q Consensus 116 ~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~------~~~~l~~~~ 185 (330)
.+ ++|++|++++|++........ ...+..+ ++|+.+++++|.++ ....+..++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l-----------------~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLL-----------------AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHH-----------------HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 12 336666666655442100000 0112233 45555555555543 112234455
Q ss_pred CCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC--cC----C
Q 020161 186 NLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM--EG----L 246 (330)
Q Consensus 186 ~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~--~~----~ 246 (330)
+|++|++++|.+.+. .+...++|+.|++++|.+++. ..+..++.|+.|++++|.+++. .. +
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence 666666666665532 233445677777777766543 2345677888888888887752 11 1
Q ss_pred -CCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCchHH-HHHHHhccc-cccchhhccCCCc
Q 020161 247 -STLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLES-IVEAVAGSR-ETLTTIYLENNPC 311 (330)
Q Consensus 247 -~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~-~~L~~l~l~~n~~ 311 (330)
...+.|+.|++++|.+++. ..+..+++|+++++++|.+++.+. ....++... +.|+.+++.+|++
T Consensus 246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1347899999999998743 345566889999999999996533 233445555 7899999988874
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=3.1e-16 Score=147.94 Aligned_cols=227 Identities=24% Similarity=0.259 Sum_probs=178.3
Q ss_pred ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161 22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 101 (330)
+...++.|++++|.+..+|. ..+++|++|++++|.++++|..+. ++|+.|++++|.+... |. .+ ..+|+.|
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~L-P~---~l--~s~L~~L 267 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITEL-PE---RL--PSALQSL 267 (754)
T ss_pred cccCCcEEEecCCCCCcCCh-hhccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcC-Ch---hH--hCCCCEE
Confidence 35689999999999999886 345799999999999999987653 4799999999998853 21 22 2579999
Q ss_pred EccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccc-c
Q 020161 102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME-N 180 (330)
Q Consensus 102 ~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~ 180 (330)
++++|.++.+|.- -.++|++|++++|.+..++.. ...+|+.|++++|.+..+.. ...++|+.|++++|.++.++ .
T Consensus 268 ~Ls~N~L~~LP~~-l~~sL~~L~Ls~N~Lt~LP~~--lp~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~Lt~LP~~ 343 (754)
T PRK15370 268 DLFHNKISCLPEN-LPEELRYLSVYDNSIRTLPAH--LPSGITHLNVQSNSLTALPE-TLPPGLKTLEAGENALTSLPAS 343 (754)
T ss_pred ECcCCccCccccc-cCCCCcEEECCCCccccCccc--chhhHHHHHhcCCccccCCc-cccccceeccccCCccccCChh
Confidence 9999999988861 235899999999999877642 23578999999998887532 12368999999999886443 3
Q ss_pred ccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcC-----CCCCCCCCEE
Q 020161 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG-----LSTLVNLHVL 255 (330)
Q Consensus 181 l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~L~~L 255 (330)
+ .++|+.|++++|.+...+....++|+.|++++|.++..|.. -...|+.|++++|+++.++. ....+.+..+
T Consensus 344 l--~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~-l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 344 L--PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPEN-LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred h--cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHh-HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEE
Confidence 3 26899999999998866444457899999999999987542 23479999999999998753 2345789999
Q ss_pred EcCCCCCCC
Q 020161 256 DVSSNKLTL 264 (330)
Q Consensus 256 ~l~~n~~~~ 264 (330)
++.+|+++.
T Consensus 421 ~L~~Npls~ 429 (754)
T PRK15370 421 IVEYNPFSE 429 (754)
T ss_pred EeeCCCccH
Confidence 999999874
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=7.3e-19 Score=147.42 Aligned_cols=275 Identities=23% Similarity=0.291 Sum_probs=173.1
Q ss_pred CCCCCCCCCCcccCCCcccccccCCCcEEeccCcccccCCCCCC--CCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCC
Q 020161 1 MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLR 77 (330)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~--~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~ 77 (330)
|++++.++.+.- ...++...++++..|.++.+|+..| .++|+.|++++|.|+.|.+ .|.++++|..|-+.
T Consensus 51 VdCr~~GL~eVP-------~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 51 VDCRGKGLTEVP-------ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred EEccCCCcccCc-------ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh
Confidence 345555554433 2345666889999999999998776 6899999999999998865 59999999887766
Q ss_pred C-CcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCCCC
Q 020161 78 Q-NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEV 153 (330)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 153 (330)
+ |+|++. +.+.|..+..++.|.+.-|++.-++. +..++++..|.++.|.+..+...... ...++.+.+..|.+
T Consensus 124 g~NkI~~l---~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 124 GNNKITDL---PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred cCCchhhh---hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 6 899987 55678889999999998888887654 78899999999999998877764333 66677777766653
Q ss_pred CCcc--------------cccCCCCccEEEcCCccccccccccCCCCCcEE--EC-cCCCcccc----ccCCCCcccEEE
Q 020161 154 PKME--------------EIEHFHDLQILEFGSNRLRVMENLQNLTNLQEL--WL-GRNRIKVV----NLCGLKCIKKIS 212 (330)
Q Consensus 154 ~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L--~l-~~~~i~~~----~~~~~~~L~~L~ 212 (330)
.... .++...-+.-..+.+.++...+.-.....++.+ .+ +.+..... .|..+++|++++
T Consensus 201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 2210 111111111111111111111000000011111 01 11111111 466667777777
Q ss_pred CCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCC
Q 020161 213 LQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIE 285 (330)
Q Consensus 213 l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~ 285 (330)
+++|+++.+ ..|.....+++|.+..|++..+. .|.++..|+.|++.+|+|+.+ ..+.....|..|++-.|++-
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 777777666 35666677777777777766653 356666777777777777655 44555566666666666544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=2e-16 Score=137.77 Aligned_cols=255 Identities=24% Similarity=0.278 Sum_probs=154.7
Q ss_pred CCCcccccccCCCcEEeccCcccccC-----C-CCCCCCCcCEEecCCCCCCC-------hhhhhhcCCCCCEEeCCCCc
Q 020161 14 TNPDQAVEIDLSNTVLDLTSFQLHDL-----D-SVEFPTNLTELDLTANRLTS-------LDSRISHLSNLKKLSLRQNL 80 (330)
Q Consensus 14 ~~~~~~~~~~~~l~~l~l~~~~l~~~-----~-~~~~~~~L~~L~l~~~~i~~-------l~~~~~~l~~L~~L~l~~~~ 80 (330)
..+...+.....+++++++++.+... + .+...+++++++++++.+.. ++..+..+++|+.|++++|.
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred cchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 34666677777799999999988442 2 23445779999999997763 23346789999999999999
Q ss_pred CCccccccchhhcccCCCcEEEccCCcCcC-----CC-CCCCC-CcccEEEccCCCCcCcc-----ccccccCCCcEEEc
Q 020161 81 IDDAAIEPISRWDALAGLEELILRDNKLMK-----IP-DVSIF-KKLSVFDVSFNEITSSH-----GLSNVTDTLKELYV 148 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~-~~~~~-~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l 148 (330)
+....+..+..+...+.|++|++++|.+.. +. .+..+ ++|+.+++++|.++... .....+.+|+.|++
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 876433333332222559999999998873 11 13444 77888888888776311 11111344555555
Q ss_pred cCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc
Q 020161 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM 221 (330)
Q Consensus 149 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~ 221 (330)
++|.+.+... . .....+...+.|+.|++++|.+.+. .+..+++|+.|++++|.+++.
T Consensus 173 ~~n~l~~~~~-~---------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 173 ANNGIGDAGI-R---------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred cCCCCchHHH-H---------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 5555442000 0 0111223334555555555544322 234455666666666665542
Q ss_pred c--cc-----ccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc------cccccC-CCCCeEeCCC
Q 020161 222 K--GF-----EECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNL-SRLEDLWLND 281 (330)
Q Consensus 222 ~--~~-----~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~------~~~~~~-~~L~~L~l~~ 281 (330)
. .+ ...+.|+.+++++|.+++. ..+...++|+.+++++|.++.. ..+... +.|+++++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 1 11 1236788888888877631 2344557888888888888755 233444 6788888887
Q ss_pred CCC
Q 020161 282 NQI 284 (330)
Q Consensus 282 n~l 284 (330)
|++
T Consensus 317 ~~~ 319 (319)
T cd00116 317 DSF 319 (319)
T ss_pred CCC
Confidence 763
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.3e-15 Score=114.27 Aligned_cols=160 Identities=29% Similarity=0.450 Sum_probs=131.0
Q ss_pred ccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CC
Q 020161 37 HDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VS 115 (330)
Q Consensus 37 ~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~ 115 (330)
..++.+.-+++++.|.+|+|+++.+|+.+..+.+|+.|++.+|++.. .+.++.++++|++|++.-|.+..+|. ++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~----lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE----LPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh----cChhhhhchhhhheecchhhhhcCccccC
Confidence 33445555789999999999999999999999999999999999987 44567789999999999999888885 89
Q ss_pred CCCcccEEEccCCCCcC--ccccccccCCCcEEEccCCCCCC-cccccCCCCccEEEcCCccc-cccccccCCCCCcEEE
Q 020161 116 IFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRL-RVMENLQNLTNLQELW 191 (330)
Q Consensus 116 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~-~~~~~l~~~~~L~~L~ 191 (330)
.++.|..||+..|.+.. ++..++.+..|+.|+++.|.++- +..++.+.+|+.|.+..|.+ +.+..++.+..|++|.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 99999999999998874 44555558889999999998877 35688888888888887765 5667777778888888
Q ss_pred CcCCCcccc
Q 020161 192 LGRNRIKVV 200 (330)
Q Consensus 192 l~~~~i~~~ 200 (330)
+.+|++.-.
T Consensus 180 iqgnrl~vl 188 (264)
T KOG0617|consen 180 IQGNRLTVL 188 (264)
T ss_pred cccceeeec
Confidence 777765443
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.46 E-value=4.2e-14 Score=109.88 Aligned_cols=127 Identities=29% Similarity=0.372 Sum_probs=53.0
Q ss_pred ccccCCCCCcEEECcCCCcccc-ccC-CCCcccEEECCCCccccccccccccccceEEccCCCCCCCc-CC-CCCCCCCE
Q 020161 179 ENLQNLTNLQELWLGRNRIKVV-NLC-GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME-GL-STLVNLHV 254 (330)
Q Consensus 179 ~~l~~~~~L~~L~l~~~~i~~~-~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~-~~-~~~~~L~~ 254 (330)
+.+.++.++++|++.++.+... .+. .+.+++.|++++|.++..+++..++.|++|++++|.++.+. .+ ..+++|++
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3444555677777777777766 444 45678888888888888877888888888888888888874 34 35788888
Q ss_pred EEcCCCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhh
Q 020161 255 LDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305 (330)
Q Consensus 255 L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~ 305 (330)
|.+++|+|.++ ..+..+++|+.|++.+|+++..+..=..++..+|+|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 88888888766 5667788999999999998876666667788889999865
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.42 E-value=6e-14 Score=114.43 Aligned_cols=134 Identities=27% Similarity=0.323 Sum_probs=115.9
Q ss_pred cccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCC-CCCCCCCEEE
Q 020161 180 NLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL-STLVNLHVLD 256 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~L~~L~ 256 (330)
.+..+..|+++|++.|.+..+ .++-.|.++.|+++.|.++....+..+++|+.|++++|.++.+.++ ..+.+++.|.
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 345567889999999998877 6788899999999999999998899999999999999999988764 4677999999
Q ss_pred cCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 257 VSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 257 l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
+++|.+.+++.+..+-+|..||+++|+|..+++ ..-++++|.|..+.|.+||+....
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~lde--V~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDE--VNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHH--hcccccccHHHHHhhcCCCccccc
Confidence 999999999889999999999999999998754 345789999999999999976543
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=3.6e-14 Score=117.77 Aligned_cols=109 Identities=23% Similarity=0.266 Sum_probs=62.6
Q ss_pred CCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc-----
Q 020161 203 CGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV----- 265 (330)
Q Consensus 203 ~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~----- 265 (330)
+..+.|+.+.+..|.+... ..+..|++|+.|++.+|-++.- +.++.+++|+++++++|.++.-
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 3334455555554444332 2345666666666666666542 3456666777777777776644
Q ss_pred -c-ccccCCCCCeEeCCCCCCCchHH-HHHHHhccccccchhhccCCCc
Q 020161 266 -D-DIQNLSRLEDLWLNDNQIESLES-IVEAVAGSRETLTTIYLENNPC 311 (330)
Q Consensus 266 -~-~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~ 311 (330)
. .-...|+|+.+.+.+|.|+.-++ .+.......|.|..|+|++|.+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 11235677777777777774422 2222334467777777777776
No 25
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.38 E-value=5.3e-14 Score=126.50 Aligned_cols=266 Identities=40% Similarity=0.600 Sum_probs=193.4
Q ss_pred CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEE
Q 020161 45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF 123 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L 123 (330)
++.++.++...+.+.........+..+..+.+..|.+... ...+..+++|+.+++.+|.+..+.. +..+++|++|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~----~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L 123 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKI----LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVL 123 (414)
T ss_pred cchhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhh----hcccccccceeeeeccccchhhcccchhhhhcchhe
Confidence 4455555555554432221113456666666777766651 2234567888888888888888877 7778888888
Q ss_pred EccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccccc--ccCCCCCcEEECcCCCcccc-
Q 020161 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVV- 200 (330)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~i~~~- 200 (330)
++++|.+..+.++... ..|+.|++.+|.+..+..+..+..|+.+++++|.+..+.. ...+.+++.+++..|.+...
T Consensus 124 ~ls~N~I~~i~~l~~l-~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 124 DLSFNKITKLEGLSTL-TLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE 202 (414)
T ss_pred eccccccccccchhhc-cchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc
Confidence 8888888877765443 3488888888888888888888889999999998876666 57788888899988887776
Q ss_pred ccCCCCcccEEECCCCccccccccccccc--cceEEccCCCCCCC-cCCCCCCCCCEEEcCCCCCCCccccccCCCCCeE
Q 020161 201 NLCGLKCIKKISLQSNRLTSMKGFEECIA--LEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL 277 (330)
Q Consensus 201 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--L~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L 277 (330)
.+.....+..+++..|.++.......... |+.+++.++.+... ..+..+..+..++++.|++.....+...+.+..+
T Consensus 203 ~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~ 282 (414)
T KOG0531|consen 203 GLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSEL 282 (414)
T ss_pred chHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHh
Confidence 55666666666888888877765555555 88999999998887 7788888899999999998888777777788888
Q ss_pred eCCCCCCCchHHHHHHH-hccccccchhhccCCCccccc
Q 020161 278 WLNDNQIESLESIVEAV-AGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 278 ~l~~n~l~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~ 315 (330)
....+++.........- ....+.++.+.+.+|+.....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 283 WLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 88888877432222221 555688888888888865543
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.38 E-value=1.2e-13 Score=107.35 Aligned_cols=132 Identities=28% Similarity=0.450 Sum_probs=52.8
Q ss_pred CCcccc-ccCCCCcccEEECCCCccccccccc-cccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc-ccc-cc
Q 020161 195 NRIKVV-NLCGLKCIKKISLQSNRLTSMKGFE-ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDI-QN 270 (330)
Q Consensus 195 ~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~-~~ 270 (330)
+.+... .+..+.+++.|++.+|.++....+. .+..|+.|++++|.++.++++..+++|++|++++|+++.+ +.+ ..
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHh
Confidence 334333 4455667899999999999987776 5789999999999999999999999999999999999998 444 46
Q ss_pred CCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc-ccccccCCCCCC
Q 020161 271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL-FCYPQTNFPKYT 328 (330)
Q Consensus 271 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~p~~~ 328 (330)
+++|++|++++|+|.++.+. ..+..+++|+.|++.+||+...+. ..+.-.++|.++
T Consensus 87 lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp -TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred CCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 89999999999999987542 446789999999999999865543 445555566543
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=3.4e-14 Score=106.66 Aligned_cols=178 Identities=22% Similarity=0.408 Sum_probs=118.1
Q ss_pred CCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc-ccccccCCCCCcE
Q 020161 111 IPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQE 189 (330)
Q Consensus 111 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~ 189 (330)
++.+..+..++.|.+++|++...++. ++.+.+|+.|++.+|.++ .+..++.+++|+.
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppn----------------------ia~l~nlevln~~nnqie~lp~~issl~klr~ 83 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPN----------------------IAELKNLEVLNLSNNQIEELPTSISSLPKLRI 83 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCc----------------------HHHhhhhhhhhcccchhhhcChhhhhchhhhh
Confidence 44444555566666666666555544 444455555555555553 3345556666666
Q ss_pred EECcCCCcccc--ccCCCCcccEEECCCCccccc---cccccccccceEEccCCCCCCC-cCCCCCCCCCEEEcCCCCCC
Q 020161 190 LWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLT 263 (330)
Q Consensus 190 L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~ 263 (330)
|+++.|.+... +|+.++.|+.|++..|++... ..+-.+..|+.|++++|.+.-+ +.+..+.+|+.|.++.|.+-
T Consensus 84 lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 84 LNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred eecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence 66666655443 666777777777777666544 2344567888889999988876 46888999999999999887
Q ss_pred Cc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCc
Q 020161 264 LV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311 (330)
Q Consensus 264 ~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~ 311 (330)
.+ ..++.+++|++|.+.+|+++.++..+.. +.-.-+-+.+...+||+
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlppel~~-l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPPELAN-LDLVGNKQVMRMEENPW 211 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecChhhhh-hhhhhhHHHHhhhhCCC
Confidence 77 6688899999999999999988755433 23333344555667775
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=2.6e-13 Score=112.69 Aligned_cols=245 Identities=23% Similarity=0.287 Sum_probs=149.5
Q ss_pred CCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCc---CCccccccc----hhhcccCCCcEEEccCCcCcC--C
Q 020161 46 TNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNL---IDDAAIEPI----SRWDALAGLEELILRDNKLMK--I 111 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~---~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~--~ 111 (330)
..++.++++||.|.. +...+.+.++|+..++++-. .....++.+ .++..+++|++++||.|.+.. +
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 556677777776652 33345566677776666531 111111111 223445566666666666652 3
Q ss_pred CC----CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccc------cccc
Q 020161 112 PD----VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV------MENL 181 (330)
Q Consensus 112 ~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~l 181 (330)
+. +..+..|++|.+.+|.+...-...- -.-|..+.. ......-++|+.+.+++|++.. ...+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~~-------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELAV-------NKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHHH-------HhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 32 3445556666665555543221100 000111100 0123455678888888887742 2346
Q ss_pred cCCCCCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC-----
Q 020161 182 QNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM----- 243 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~----- 243 (330)
+..+.|+++.+.+|.|... .+..+++|+.|++..|.++.. ..+..+++|+.+++.+|.+..-
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 6778899999999877654 578889999999999988765 3466778999999999988752
Q ss_pred -cCC-CCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCchHHHHHHHhccc
Q 020161 244 -EGL-STLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298 (330)
Q Consensus 244 -~~~-~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 298 (330)
..+ ...++|+++.+.+|.++.- ..+...+.|..|+|++|.+..-+..+..+...+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKF 324 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhc
Confidence 222 3468999999999998744 345567899999999999943333334444443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=1.8e-12 Score=105.88 Aligned_cols=123 Identities=28% Similarity=0.389 Sum_probs=59.7
Q ss_pred CcEEEccCCCCCCcc-cccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-c-cCCCCcccEEECCCCccc
Q 020161 143 LKELYVSKNEVPKME-EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-N-LCGLKCIKKISLQSNRLT 219 (330)
Q Consensus 143 L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~-~~~~~~L~~L~l~~~~l~ 219 (330)
|+.+++++|.+..++ ...-.++++.|+++.|++.....++.+++|+.||+++|.+... + -..+.++++|.+.+|.+.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 445555555554432 2333455555555555555444455555555555555544443 1 122334455555555555
Q ss_pred cccccccccccceEEccCCCCCCC---cCCCCCCCCCEEEcCCCCCCCc
Q 020161 220 SMKGFEECIALEELYLSHNGISKM---EGLSTLVNLHVLDVSSNKLTLV 265 (330)
Q Consensus 220 ~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~ 265 (330)
...++.++-+|..|++++|+|..+ .++..+|.|+.+.+.+|++...
T Consensus 366 ~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 366 TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 444445555555555555555443 2344445555555555554443
No 30
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.24 E-value=7.6e-13 Score=119.03 Aligned_cols=238 Identities=32% Similarity=0.379 Sum_probs=171.7
Q ss_pred CCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEE
Q 020161 44 FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVF 123 (330)
Q Consensus 44 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L 123 (330)
.+..++.+++..+.+..+-..+..+.+|+.+++.+|.+..+.. .+..+++|++|++++|.|+.+.++..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~----~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN----LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc----chhhhhcchheeccccccccccchhhccchhhh
Confidence 3566777777777777654456778888888888887776421 145678888888888888888777777778888
Q ss_pred EccCCCCcCccccccccCCCcEEEccCCCCCCccc--ccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-
Q 020161 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV- 200 (330)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~- 200 (330)
++.+|.+..+..... +..++.+++++|.+..+.. ...+.+++.+++.+|.+..+..+.....+..+.+..|.+...
T Consensus 146 ~l~~N~i~~~~~~~~-l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 146 NLSGNLISDISGLES-LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred eeccCcchhccCCcc-chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence 888888877665443 6777888888888777666 477788888888888877665555555555556777776665
Q ss_pred ccCCCCc--ccEEECCCCccccc-cccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc------cccccC
Q 020161 201 NLCGLKC--IKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV------DDIQNL 271 (330)
Q Consensus 201 ~~~~~~~--L~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~------~~~~~~ 271 (330)
++..... |+.+.+.++.+... ..+..+..+..+++..+.+..+..+.....+..+....+.+... ......
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAA 304 (414)
T ss_pred CcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccc
Confidence 4444443 78888888887777 66777888888888888888877777777777777777776533 224556
Q ss_pred CCCCeEeCCCCCCCc
Q 020161 272 SRLEDLWLNDNQIES 286 (330)
Q Consensus 272 ~~L~~L~l~~n~l~~ 286 (330)
+.+..+.+..|++..
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 305 PTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccCcccc
Confidence 677777777777664
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=6.2e-11 Score=106.38 Aligned_cols=188 Identities=27% Similarity=0.397 Sum_probs=116.4
Q ss_pred EEEccCCcC-cCCCCCCCCCcccEEEccCCCCcCccccccccC-CCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccc
Q 020161 100 ELILRDNKL-MKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD-TLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLR 176 (330)
Q Consensus 100 ~L~l~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 176 (330)
.+.+..+.+ .....+...+.++.+++.++.+..+++...... +|+.|+++.|.+..+ ..+..+++|+.|+++.|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 355555544 223333444556666666666666655555553 666666666666654 35666677777777777765
Q ss_pred cccccc-CCCCCcEEECcCCCcccccc--CCCCcccEEECCCCc-cccccccccccccceEEccCCCCCC-CcCCCCCCC
Q 020161 177 VMENLQ-NLTNLQELWLGRNRIKVVNL--CGLKCIKKISLQSNR-LTSMKGFEECIALEELYLSHNGISK-MEGLSTLVN 251 (330)
Q Consensus 177 ~~~~l~-~~~~L~~L~l~~~~i~~~~~--~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~ 251 (330)
...... ..+.|+.|++++|.+...+. .....|+++.+++|. +.....+.....+..+.+..|.+.. ...+..+++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~ 256 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccc
Confidence 444333 56667777777777766633 244557777777773 3333455666666666677776666 345566666
Q ss_pred CCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCch
Q 020161 252 LHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 252 L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~ 287 (330)
++.|++++|.++.++.+....+++.|++++|.+..+
T Consensus 257 l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 257 LETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cceeccccccccccccccccCccCEEeccCcccccc
Confidence 777777777777776577777777777777766643
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-11 Score=105.98 Aligned_cols=198 Identities=22% Similarity=0.273 Sum_probs=96.8
Q ss_pred cccCCCcEEEccCCcCcCCC---CCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEE
Q 020161 93 DALAGLEELILRDNKLMKIP---DVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE 169 (330)
Q Consensus 93 ~~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 169 (330)
.++.+|+.+.+.++.+...+ ....+++++.|++++|-+....+.... ...+++|+.|+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i-------------------~eqLp~Le~LN 178 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKI-------------------AEQLPSLENLN 178 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHH-------------------HHhcccchhcc
Confidence 34667777777777666444 145567777777777655544433222 23344444444
Q ss_pred cCCcccccc---ccccCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCc-cccc-cccccccccceEEccCCCC
Q 020161 170 FGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNR-LTSM-KGFEECIALEELYLSHNGI 240 (330)
Q Consensus 170 l~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~-l~~~-~~~~~~~~L~~l~l~~~~~ 240 (330)
++.|++..+ ..-...++++.|.++.|+++-. ....+|+++.|.+..|. +... ....-++.|++|+|++|++
T Consensus 179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred cccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 444444221 0012344555555555555432 23445555555555552 1111 1123345555566655555
Q ss_pred CCCc---CCCCCCCCCEEEcCCCCCCCcc---c-----cccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161 241 SKME---GLSTLVNLHVLDVSSNKLTLVD---D-----IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309 (330)
Q Consensus 241 ~~~~---~~~~~~~L~~L~l~~n~~~~~~---~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n 309 (330)
-+.+ ....+++|+.|+++.+.++++. . ....++|++|++..|+|.++... .+ +...++|+.+.+..|
T Consensus 259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~~-l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL-NH-LRTLENLKHLRITLN 336 (505)
T ss_pred cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc-ch-hhccchhhhhhcccc
Confidence 4432 3445555555555555555441 1 23345566666666665544221 11 233355555555555
Q ss_pred Cc
Q 020161 310 PC 311 (330)
Q Consensus 310 ~~ 311 (330)
++
T Consensus 337 ~l 338 (505)
T KOG3207|consen 337 YL 338 (505)
T ss_pred cc
Confidence 54
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.1e-12 Score=108.07 Aligned_cols=198 Identities=24% Similarity=0.283 Sum_probs=108.7
Q ss_pred hcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC----CCCCCcccEEEccCCCCcCcccc--ccc
Q 020161 66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD----VSIFKKLSVFDVSFNEITSSHGL--SNV 139 (330)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~~~~~~~~--~~~ 139 (330)
.++.+|+.+.+.++.+.....+ .....|+.++.|+++.|-+..+.. ...+|+|+.|+++.|++.....- ...
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3456666666666655553221 234556666666666665554322 34566666666666665433221 112
Q ss_pred cCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc----ccCCCCcccE
Q 020161 140 TDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKK 210 (330)
Q Consensus 140 ~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~ 210 (330)
.++++.|.++.|.+.+- .....+++++.|.+.+|..... ....-...|++|++++|.+-+. ....++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 45566666666666551 2234556666666666531111 1122234566666666654443 3445566666
Q ss_pred EECCCCccccc--cc------cccccccceEEccCCCCCCCcCC---CCCCCCCEEEcCCCCCCCc
Q 020161 211 ISLQSNRLTSM--KG------FEECIALEELYLSHNGISKMEGL---STLVNLHVLDVSSNKLTLV 265 (330)
Q Consensus 211 L~l~~~~l~~~--~~------~~~~~~L~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~ 265 (330)
|+++.+.+..+ +. ....+.|+.|++..|++.+.+++ ..+++|+.|.+..|+++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 66666655544 11 24567777777777777665443 3456677777777776543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=2e-10 Score=103.11 Aligned_cols=190 Identities=31% Similarity=0.429 Sum_probs=113.6
Q ss_pred EEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccC-CCcEEEccCCcCcCCC-CCCCCCcccEEEccC
Q 020161 50 ELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA-GLEELILRDNKLMKIP-DVSIFKKLSVFDVSF 127 (330)
Q Consensus 50 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~ 127 (330)
.+....+.+..-...+..++.++.+++.++.++...+. ....+ +|+.|+++.+.+..++ ++..+++|+.|+++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~----~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL----IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc----cccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 45555555533333344556666666666666654221 12232 5666666666666664 356666666666666
Q ss_pred CCCcCccccccccCCCcEEEccCCCCCCcccc-cCCCCccEEEcCCcc-ccccccccCCCCCcEEECcCCCccc--cccC
Q 020161 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEI-EHFHDLQILEFGSNR-LRVMENLQNLTNLQELWLGRNRIKV--VNLC 203 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~--~~~~ 203 (330)
|++..++......+.++.|++++|.+..++.. .....|+++.+++|. +..+..+.....+..+.+..+.+.. ....
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence 66666665544556666666666666665443 344446667777663 3455555666666666666666655 3556
Q ss_pred CCCcccEEECCCCccccccccccccccceEEccCCCCCCC
Q 020161 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM 243 (330)
Q Consensus 204 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~ 243 (330)
.+++++.|++++|.++..+.+.....++.++++++.+...
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 253 NLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccceeccccccccccccccccCccCEEeccCcccccc
Confidence 6666777777777777666566667777777777666543
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=2.9e-11 Score=106.75 Aligned_cols=200 Identities=27% Similarity=0.294 Sum_probs=150.6
Q ss_pred CcccccccCCCcEEeccCcccccCCCCCC---CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhh
Q 020161 16 PDQAVEIDLSNTVLDLTSFQLHDLDSVEF---PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRW 92 (330)
Q Consensus 16 ~~~~~~~~~~l~~l~l~~~~l~~~~~~~~---~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 92 (330)
++.+.+..-.--+|.+++.++..+|.... .......+++.|++..+|..+..|..|..+.+..|.+-.+ ...+
T Consensus 42 l~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i----p~~i 117 (722)
T KOG0532|consen 42 LERALEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI----PEAI 117 (722)
T ss_pred hhHHHHHHhhhcccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceec----chhh
Confidence 33333333444567788888888876444 3556778899999999998888888899988888877664 2345
Q ss_pred cccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEc
Q 020161 93 DALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEF 170 (330)
Q Consensus 93 ~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l 170 (330)
.++..|++++++.|.++.+|. +..+ -|+.|-+++|+++.++.......+|..|+.+.|.+..+ ..+.++.+|+.+.+
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 668888999999999998886 4444 48889999999998887666778888899999888774 45777788888888
Q ss_pred CCcccc-ccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCccccc
Q 020161 171 GSNRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSM 221 (330)
Q Consensus 171 ~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~ 221 (330)
..|++. .+..+..+ .|..||+++|.+... .|..+..|++|-+.+|.++.-
T Consensus 197 rRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 197 RRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence 887764 55556644 478888888888776 677888888888888877654
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.89 E-value=3.5e-11 Score=109.19 Aligned_cols=186 Identities=24% Similarity=0.341 Sum_probs=121.2
Q ss_pred CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECc
Q 020161 114 VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLG 193 (330)
Q Consensus 114 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~ 193 (330)
+..+.+|++|.+.++.+.....+...-.+|++|.+.+. +.. |+++ +..|.-. +..-...-.|...+++
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~S-l~A---------l~~v-~ascggd-~~ns~~Wn~L~~a~fs 172 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNS-LDA---------LRHV-FASCGGD-ISNSPVWNKLATASFS 172 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhcc-HHH---------HHHH-HHHhccc-cccchhhhhHhhhhcc
Confidence 55677888888888887765554444455665544332 111 0100 0000000 0000112345556666
Q ss_pred CCCcccc--ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCC-CCCCEEEcCCCCCCCcccccc
Q 020161 194 RNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTL-VNLHVLDVSSNKLTLVDDIQN 270 (330)
Q Consensus 194 ~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~ 270 (330)
+|.+... .+.-++.++.|++++|+++....++.|+.|++|||++|.+..++.+..- ..|..|.+++|.++.+..+.+
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~ 252 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIEN 252 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHh
Confidence 6665444 5666677888888888888888888888899999999888887755422 248999999999998877888
Q ss_pred CCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161 271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 271 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
+++|+.||+++|-|.+-... ..+..+..|+.|+|.|||+-+
T Consensus 253 LksL~~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhhccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCcccc
Confidence 88999999999987754322 234556778999999999643
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=2.9e-11 Score=106.78 Aligned_cols=207 Identities=20% Similarity=0.309 Sum_probs=123.0
Q ss_pred EEEccCCcCcCCCC---CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCccc
Q 020161 100 ELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 100 ~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 175 (330)
.|.|++-.+..+|. -..+.--...+++.|++..++.....+..|+.+.+..|.+..+ ..+..+..|+.++++.|.+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence 44555555555542 1223344566777787777776555566677777776666553 4566666777777777776
Q ss_pred c-ccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCccccc-cccccccccceEEccCCCCCCCc-CCCCCC
Q 020161 176 R-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKME-GLSTLV 250 (330)
Q Consensus 176 ~-~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~ 250 (330)
+ .+..+..++ |+.|-+++|.+... +++....|..++.+.|.+... +.+.....|+.+.+..|.+..++ .+. .-
T Consensus 134 S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~L 211 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SL 211 (722)
T ss_pred hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CC
Confidence 5 334555555 66666666666554 445556666666666666655 34555666666666666666553 233 23
Q ss_pred CCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161 251 NLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309 (330)
Q Consensus 251 ~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n 309 (330)
.|..||+|+|+++.+ ..+..++.|++|.|.+|+++.-+..+ -+.+..+=-+.|+..-|
T Consensus 212 pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqI-C~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQI-CEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHH-Hhccceeeeeeecchhc
Confidence 366777777777666 45666777777777777776544332 22344444455544444
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=4e-09 Score=101.95 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=82.8
Q ss_pred CCCcEEeccCcccccCCCCCCCCCcCEEecCCCC--CCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANR--LTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~--i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
...+.+.+.++.+..++.-..++.|++|-+.++. +..++.. |..++.|++|++++|.-....| ..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP---~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP---SSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC---hHHhhhhhhhc
Confidence 3446666666666666554555678888888875 5555554 6678888888888765444433 34455777788
Q ss_pred EEccCCcCcCCCC-CCCCCcccEEEccCCCCcCcc-ccccccCCCcEEEccCCC
Q 020161 101 LILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNE 152 (330)
Q Consensus 101 L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 152 (330)
|+++++.+..+|. ++++..|.+|++..+...... .....+++|+.|.+....
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 8888888887776 777778888888777543333 333336777777766544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=6.9e-09 Score=66.43 Aligned_cols=60 Identities=37% Similarity=0.542 Sum_probs=38.6
Q ss_pred CCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcC
Q 020161 46 TNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKL 108 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 108 (330)
++|++|++++|++..++. .|.++++|++|++++|.+... ....|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i---~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI---PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE---ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc---CHHHHcCCCCCCEEeCcCCcC
Confidence 456677777777776665 366677777777777766655 233455666677777666653
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.2e-08 Score=98.71 Aligned_cols=214 Identities=21% Similarity=0.202 Sum_probs=119.6
Q ss_pred CCcEEeccCcc--cccCCC--CCCCCCcCEEecCCC-CCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161 25 SNTVLDLTSFQ--LHDLDS--VEFPTNLTELDLTAN-RLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (330)
Q Consensus 25 ~l~~l~l~~~~--l~~~~~--~~~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 99 (330)
.++.|=+.++. +..++. ...++.|+.|++++| .+..+|..++.+-+||+|+++++.+.. .+..+.++..|.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~----LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH----LPSGLGNLKKLI 621 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc----cchHHHHHHhhh
Confidence 46666666654 444444 344688999999977 566889889999999999999988775 445677788899
Q ss_pred EEEccCCc-CcCCCCC-CCCCcccEEEccCCCCcCccccccc---cCCCcEEEccCCCCCCcccccCCCCcc----EEEc
Q 020161 100 ELILRDNK-LMKIPDV-SIFKKLSVFDVSFNEITSSHGLSNV---TDTLKELYVSKNEVPKMEEIEHFHDLQ----ILEF 170 (330)
Q Consensus 100 ~L~l~~~~-l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~L~----~L~l 170 (330)
+|++..+. +..++.+ ..+++|++|.+.............. +..|+.+............+..+..|. .+.+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence 99988764 3445554 4488999998887752221111111 233333333222220012222222222 2222
Q ss_pred CCccc-cccccccCCCCCcEEECcCCCccccccCCCC---------cccEEECCCCccccc-cccccccccceEEccCCC
Q 020161 171 GSNRL-RVMENLQNLTNLQELWLGRNRIKVVNLCGLK---------CIKKISLQSNRLTSM-KGFEECIALEELYLSHNG 239 (330)
Q Consensus 171 ~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~---------~L~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~ 239 (330)
.++.. +....+..+.+|+.|.+.++.+.+..+.... ++..+...++..-.. ......++|+.+.+.++.
T Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 22222 2334566677778888777776544222211 222222222211111 223456788888887776
Q ss_pred CCC
Q 020161 240 ISK 242 (330)
Q Consensus 240 ~~~ 242 (330)
..+
T Consensus 782 ~~e 784 (889)
T KOG4658|consen 782 LLE 784 (889)
T ss_pred ccc
Confidence 443
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.68 E-value=7.6e-10 Score=94.51 Aligned_cols=277 Identities=18% Similarity=0.111 Sum_probs=146.5
Q ss_pred CCcEEeccCcccccCCC----CCCCCCcCEEecCCCC-CCC-hhhhh-hcCCCCCEEeCCCC-cCCccccccchhhcccC
Q 020161 25 SNTVLDLTSFQLHDLDS----VEFPTNLTELDLTANR-LTS-LDSRI-SHLSNLKKLSLRQN-LIDDAAIEPISRWDALA 96 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~----~~~~~~L~~L~l~~~~-i~~-l~~~~-~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~ 96 (330)
.++.|.+.++.--+..+ ...++++++|++.+|. ++. .-.++ ..|++|+++++..| .+++...+.+ ...++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l--a~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL--AEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH--HHhhh
Confidence 35666666654333222 2336778888888774 331 11122 35778888888774 3444422211 24578
Q ss_pred CCcEEEccCC-cCcC--CCC-CCCCCcccEEEccCCCCcCcccc---ccccCCCcEEEccCCCC-CCc---ccccCCCCc
Q 020161 97 GLEELILRDN-KLMK--IPD-VSIFKKLSVFDVSFNEITSSHGL---SNVTDTLKELYVSKNEV-PKM---EEIEHFHDL 165 (330)
Q Consensus 97 ~L~~L~l~~~-~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~-~~~---~~~~~~~~L 165 (330)
+|.+|+++|| .+++ +.. ...+..+..+...+|.=..+..+ ...+..+..+++..|.. ++. ..-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 8888888887 3443 322 33444455555554432222111 12244455555545532 221 123456677
Q ss_pred cEEEcCCccc-c--cc-ccccCCCCCcEEECcCCC-cccccc----CCCCcccEEECCCCcccccc----ccccccccce
Q 020161 166 QILEFGSNRL-R--VM-ENLQNLTNLQELWLGRNR-IKVVNL----CGLKCIKKISLQSNRLTSMK----GFEECIALEE 232 (330)
Q Consensus 166 ~~L~l~~~~~-~--~~-~~l~~~~~L~~L~l~~~~-i~~~~~----~~~~~L~~L~l~~~~l~~~~----~~~~~~~L~~ 232 (330)
+.++.+++.- + .+ .-.+++.+|+.+.++.++ +++.+| ..++.|+.+++..+...... --.+|+.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 7777776543 2 11 223466777777777764 344322 34466777777666443331 2346677777
Q ss_pred EEccCCCCCCC-------cCCCCCCCCCEEEcCCCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccc
Q 020161 233 LYLSHNGISKM-------EGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT 302 (330)
Q Consensus 233 l~l~~~~~~~~-------~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 302 (330)
+.+++|....- ....+...++.+.+++++.+.. ..+..++.|+.+++-+++-..- +.+..+..++|+++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk-~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK-EAISRFATHLPNIK 455 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh-hhhHHHHhhCccce
Confidence 77776643221 1234455677777777765433 4556666777777777663322 23345566666666
Q ss_pred hh
Q 020161 303 TI 304 (330)
Q Consensus 303 ~l 304 (330)
+.
T Consensus 456 v~ 457 (483)
T KOG4341|consen 456 VH 457 (483)
T ss_pred eh
Confidence 53
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=5.7e-08 Score=62.15 Aligned_cols=59 Identities=34% Similarity=0.514 Sum_probs=43.2
Q ss_pred CCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCC
Q 020161 69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEI 130 (330)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~ 130 (330)
|+|++|++++|.+... +...|..+++|++|++++|.++.+++ +..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i---~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEI---PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEE---CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCcc---CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5678888888877765 33456677888888888888877664 67778888888877753
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.55 E-value=1.4e-08 Score=82.38 Aligned_cols=187 Identities=22% Similarity=0.245 Sum_probs=83.1
Q ss_pred CCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCcCCc---ccc----ccchhhcccCCCcEEEccCCcCcC-CC
Q 020161 46 TNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDD---AAI----EPISRWDALAGLEELILRDNKLMK-IP 112 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~---~~~----~~~~~~~~~~~L~~L~l~~~~l~~-~~ 112 (330)
..++++++|||.|.. +...+..-.+|+..+++.-.... ..+ ....++..||+|+.+++|.|.+.. .|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 455666666665552 22234455566666655421111 100 012234556666666666666552 22
Q ss_pred C-----CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc------ccc
Q 020161 113 D-----VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM------ENL 181 (330)
Q Consensus 113 ~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~l 181 (330)
+ ++..+.|.+|.+.+|.+..+...... ..|.+| .. ......-+.|+.+....|++..- ..+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig-kal~~l--a~-----nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KALFHL--AY-----NKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHH-HHHHHH--HH-----HhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 1 44455566666666655443221100 000000 00 01223345556666665555311 112
Q ss_pred cCCCCCcEEECcCCCcccc--------ccCCCCcccEEECCCCcccccc------ccccccccceEEccCCCC
Q 020161 182 QNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGI 240 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~i~~~--------~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~L~~l~l~~~~~ 240 (330)
..-..|+++.+.+|+|... ++..+.+|+.|+++.|.++... .+..++.|+.|.+.+|-+
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 2223556666666655433 3344455555555555444331 122334455555555444
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=5.6e-10 Score=101.57 Aligned_cols=205 Identities=26% Similarity=0.314 Sum_probs=132.2
Q ss_pred hcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCC-CcccEEEccCCCCcCccccccccCCCc
Q 020161 66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF-KKLSVFDVSFNEITSSHGLSNVTDTLK 144 (330)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~ 144 (330)
.-+++++.+.+-...-.+ |..+-.+..+.+|+.|-+.+|.+..+-++..+ .+|++|.+ .+....+..+...+
T Consensus 81 d~lqkt~~lkl~~~pa~~--pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC-~~Sl~Al~~v~asc---- 153 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARD--PTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLIC-HNSLDALRHVFASC---- 153 (1096)
T ss_pred HHHhhheeeeecccCCCC--CCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhh-hccHHHHHHHHHHh----
Confidence 345556666554432222 22222345578899999999988764332222 23444433 22333322221111
Q ss_pred EEEccCCCCCCcccccCCCCccEEEcCCcccccc-ccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCcccccc
Q 020161 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK 222 (330)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~ 222 (330)
..++..-..-.+|...++++|.+..+ .+++-+++++.|+++.|.+.++ .+.+++.|++|+++.|.++..+
T Consensus 154 --------ggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp 225 (1096)
T KOG1859|consen 154 --------GGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVP 225 (1096)
T ss_pred --------ccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhcccc
Confidence 00000000112355667777777655 4466778888888888888887 6778888888999888888886
Q ss_pred ccc--cccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc---cccccCCCCCeEeCCCCCCCc
Q 020161 223 GFE--ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 223 ~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~ 286 (330)
.+. .|. |+.|.+++|.++.+-++.++.+|..|+++.|-+.+. ..++.+..|..|+|.+|++--
T Consensus 226 ~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 226 QLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 543 344 888999999888888888888999999999877655 667888888999999998763
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.5e-09 Score=85.28 Aligned_cols=168 Identities=20% Similarity=0.259 Sum_probs=108.6
Q ss_pred CCcCEEecCCCCCC--ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCC-cCcCCC--C-CCCCCc
Q 020161 46 TNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN-KLMKIP--D-VSIFKK 119 (330)
Q Consensus 46 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~--~-~~~~~~ 119 (330)
+++++|++++..|+ .+..-+.+|.+|+.|.+.++.+.+... ..+.....|+.++++.| .++... . +..+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~---~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV---NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH---HHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 56999999998888 466668889999999999988877422 23556788899998876 555422 1 567788
Q ss_pred ccEEEccCCCCcCcc---ccccccCCCcEEEccCCCCCC----cc-cccCCCCccEEEcCCccc-c--ccccccCCCCCc
Q 020161 120 LSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPK----ME-EIEHFHDLQILEFGSNRL-R--VMENLQNLTNLQ 188 (330)
Q Consensus 120 L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~----~~-~~~~~~~L~~L~l~~~~~-~--~~~~l~~~~~L~ 188 (330)
|..|+++.|.+.... ...+..++|..|+++++.-.- +. -...+++|.+||++.+.. + ....+..++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 888888888665322 122336777888887763211 11 235667777777776543 1 223445566677
Q ss_pred EEECcCCC-cccc---ccCCCCcccEEECCCC
Q 020161 189 ELWLGRNR-IKVV---NLCGLKCIKKISLQSN 216 (330)
Q Consensus 189 ~L~l~~~~-i~~~---~~~~~~~L~~L~l~~~ 216 (330)
+|.++.|. +... .+...+++.+|++.++
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 77776653 2221 5666667777776655
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.44 E-value=4.9e-07 Score=70.31 Aligned_cols=123 Identities=24% Similarity=0.320 Sum_probs=77.3
Q ss_pred CcEEeccCcccccCCCCCC-CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161 26 NTVLDLTSFQLHDLDSVEF-PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~~~~-~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (330)
-+++++.+.++..++.++. ......+++++|.+..++. |.++++|+.|.+++|.|+.+.+... ..++.|..|.+.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchh---hhccccceEEec
Confidence 4556666666666554333 3566777777777666543 6677777777777777777654321 235667777777
Q ss_pred CCcCcCCC---CCCCCCcccEEEccCCCCcCccc----cccccCCCcEEEccCCC
Q 020161 105 DNKLMKIP---DVSIFKKLSVFDVSFNEITSSHG----LSNVTDTLKELYVSKNE 152 (330)
Q Consensus 105 ~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~ 152 (330)
+|.+..+. ++..+|.|++|.+-+|....... .....++|+.|++.+-.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77666433 35667777777777776654332 23336777777776643
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=9.2e-08 Score=78.64 Aligned_cols=80 Identities=25% Similarity=0.248 Sum_probs=46.2
Q ss_pred CCCcccEEECCCCccccc---cccccccccceEEccCCCCCC---CcCCCCCCCCCEEEcCCCCCCCc--------cccc
Q 020161 204 GLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISK---MEGLSTLVNLHVLDVSSNKLTLV--------DDIQ 269 (330)
Q Consensus 204 ~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~l~l~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~--------~~~~ 269 (330)
.++++..+-+..|.+... ......+.+-.|+++.+++.+ ++.+.+++.|..|.++++++.+. -.++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 345566666666644433 344455566666677666655 34566667777777777776544 1245
Q ss_pred cCCCCCeEeCCCCCCC
Q 020161 270 NLSRLEDLWLNDNQIE 285 (330)
Q Consensus 270 ~~~~L~~L~l~~n~l~ 285 (330)
.+++++.|+ +.+|+
T Consensus 277 RL~~v~vLN--GskIs 290 (418)
T KOG2982|consen 277 RLTKVQVLN--GSKIS 290 (418)
T ss_pred eccceEEec--Ccccc
Confidence 566666655 33554
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.8e-09 Score=84.53 Aligned_cols=171 Identities=21% Similarity=0.139 Sum_probs=125.6
Q ss_pred CCcEEeccCcccccC---CCCCCCCCcCEEecCCCCCC-ChhhhhhcCCCCCEEeCCCCc-CCccccccchhhcccCCCc
Q 020161 25 SNTVLDLTSFQLHDL---DSVEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNL-IDDAAIEPISRWDALAGLE 99 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~---~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~ 99 (330)
.++.+|+++..++-- ..+..|..|+.|++.|+.+. .+...+....+|+.++++++. ++..+.. --+.+|+.|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~--ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ--LLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH--HHHHhhhhHh
Confidence 467888877665432 12345789999999999998 566678899999999999974 4443221 1257899999
Q ss_pred EEEccCCcCcC-C-CC--CCCCCcccEEEccCCCCc----CccccccccCCCcEEEccCCCCCC---cccccCCCCccEE
Q 020161 100 ELILRDNKLMK-I-PD--VSIFKKLSVFDVSFNEIT----SSHGLSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQIL 168 (330)
Q Consensus 100 ~L~l~~~~l~~-~-~~--~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L 168 (330)
.|+++||.+.. . .. .+--+.|+.|+++++... .+.-+...++++.+|+++.|.... +..+..++.|+++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 99999997663 2 11 233468899999988533 333445669999999999986555 3568899999999
Q ss_pred EcCCccc---cccccccCCCCCcEEECcCCCc
Q 020161 169 EFGSNRL---RVMENLQNLTNLQELWLGRNRI 197 (330)
Q Consensus 169 ~l~~~~~---~~~~~l~~~~~L~~L~l~~~~i 197 (330)
.++.|-. +..-.+...|.|.+|+..++--
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 9998853 2345577889999999887643
No 49
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=3.3e-08 Score=80.43 Aligned_cols=87 Identities=28% Similarity=0.406 Sum_probs=74.1
Q ss_pred ccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhc
Q 020161 227 CIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL 306 (330)
Q Consensus 227 ~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l 306 (330)
+.+++.|+..+|++.++.....++.|++|.||-|+|+.+..+..|++|++|+|+.|.|.+++++ ..+++.|+|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL--~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL--EYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH--HHHhcCchhhhHhh
Confidence 4567788888888888877788889999999999999998899999999999999999988643 45788999999999
Q ss_pred cCCCccccc
Q 020161 307 ENNPCKIFK 315 (330)
Q Consensus 307 ~~n~~~~~~ 315 (330)
..|||....
T Consensus 96 ~ENPCc~~a 104 (388)
T KOG2123|consen 96 DENPCCGEA 104 (388)
T ss_pred ccCCccccc
Confidence 999986543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2.5e-07 Score=76.13 Aligned_cols=171 Identities=20% Similarity=0.236 Sum_probs=94.5
Q ss_pred CCCcCEEecCCCCCCChh---hhhhcCCCCCEEeCCCCcCCccccccchhh-cccCCCcEEEccCCcCc--CCCC-CCCC
Q 020161 45 PTNLTELDLTANRLTSLD---SRISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELILRDNKLM--KIPD-VSIF 117 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~--~~~~-~~~~ 117 (330)
+.+++++++.+|.|+... +-+.++|.|+.|+++.|.+.. .+... ....+|+.|.+.++.+. .... +..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----ccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 577888888888888543 336788888888888887766 33333 23567778887776654 2222 5567
Q ss_pred CcccEEEccCCCCcCcc----ccccccCCCcEEEccCCCCCCc----ccccCCCCccEEEcCCccccc---cccccCCCC
Q 020161 118 KKLSVFDVSFNEITSSH----GLSNVTDTLKELYVSKNEVPKM----EEIEHFHDLQILEFGSNRLRV---MENLQNLTN 186 (330)
Q Consensus 118 ~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~---~~~l~~~~~ 186 (330)
|.++.|+++.|.+..+- ...-..+.+..+...+|..... .-..-++++..+.+..+++.. -.+....+.
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence 77777777777443211 0011123344444444433221 112334555555555554421 122333444
Q ss_pred CcEEECcCCCcccc----ccCCCCcccEEECCCCccc
Q 020161 187 LQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLT 219 (330)
Q Consensus 187 L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~ 219 (330)
+-.|+++.+.+++. .+.+++.+..|.+.++.+.
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 44556666655544 4556666666666666543
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=2.2e-06 Score=81.15 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=71.5
Q ss_pred CcCEEecCCCCCC-ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC-CCC-CCCCCcccEE
Q 020161 47 NLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKKLSVF 123 (330)
Q Consensus 47 ~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~L~~L 123 (330)
.++.|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++ +|. +..+++|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~---~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP---SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh---HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 3778888888887 5677788888888888888888775432 45668888888888888874 555 7778888888
Q ss_pred EccCCCCcCcccccc--ccCCCcEEEccCC
Q 020161 124 DVSFNEITSSHGLSN--VTDTLKELYVSKN 151 (330)
Q Consensus 124 ~l~~~~~~~~~~~~~--~~~~L~~L~l~~~ 151 (330)
++++|.+.+..+... ...++..+++.+|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCC
Confidence 888888765433211 1233445555554
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.7e-06 Score=50.87 Aligned_cols=39 Identities=46% Similarity=0.680 Sum_probs=30.9
Q ss_pred CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCcc
Q 020161 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA 84 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~ 84 (330)
++|++|++++|+|+.+++.+.+|++|++|++++|.+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 468888888888888888888888888888888887763
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.2e-06 Score=51.44 Aligned_cols=37 Identities=41% Similarity=0.583 Sum_probs=19.6
Q ss_pred CCCEEEcCCCCCCCccc-cccCCCCCeEeCCCCCCCch
Q 020161 251 NLHVLDVSSNKLTLVDD-IQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 251 ~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 287 (330)
+|++|++++|+++.++. +..+++|+.|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555533 55555555555555555544
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=3e-06 Score=65.99 Aligned_cols=121 Identities=20% Similarity=0.320 Sum_probs=70.0
Q ss_pred CCcCEEecCCCCCCChhhhhh-cCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccE
Q 020161 46 TNLTELDLTANRLTSLDSRIS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSV 122 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~ 122 (330)
.+=+++++++..+..+.. ++ ...+...+++++|.+.. ...|..++.|.+|.+.+|.|+.+.+ -..+++|+.
T Consensus 19 ~~e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~-----l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~ 92 (233)
T KOG1644|consen 19 VRERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRK-----LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKT 92 (233)
T ss_pred ccccccccccccccchhh-ccccccccceecccccchhh-----cccCCCccccceEEecCCcceeeccchhhhccccce
Confidence 345556666665554322 22 24456666777766554 2345556667777777777776654 234566777
Q ss_pred EEccCCCCcCcccc--ccccCCCcEEEccCCCCCCcc-----cccCCCCccEEEcCC
Q 020161 123 FDVSFNEITSSHGL--SNVTDTLKELYVSKNEVPKME-----EIEHFHDLQILEFGS 172 (330)
Q Consensus 123 L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~L~~L~l~~ 172 (330)
|.+.+|++..+..+ ...+++|++|.+-+|.++.-. .+..+++|+.||+..
T Consensus 93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred EEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777766554332 233567777777776665521 245666777777655
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=4.8e-06 Score=67.91 Aligned_cols=198 Identities=21% Similarity=0.238 Sum_probs=129.1
Q ss_pred CCCCCcccEEEccCCCCcCcc-----ccccccCCCcEEEccCCCCCC------------cccccCCCCccEEEcCCcccc
Q 020161 114 VSIFKKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSKNEVPK------------MEEIEHFHDLQILEFGSNRLR 176 (330)
Q Consensus 114 ~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~~L~~L~l~~~~~~ 176 (330)
+..+..++.+++++|.+..-. .....-.+|+..+++.--... .+.+..|++++.++++.|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345678889999999876421 111113456666655421111 134678889999999988763
Q ss_pred --cc----ccccCCCCCcEEECcCCCcccc----------------ccCCCCcccEEECCCCcccccc------cccccc
Q 020161 177 --VM----ENLQNLTNLQELWLGRNRIKVV----------------NLCGLKCIKKISLQSNRLTSMK------GFEECI 228 (330)
Q Consensus 177 --~~----~~l~~~~~L~~L~l~~~~i~~~----------------~~~~~~~L~~L~l~~~~l~~~~------~~~~~~ 228 (330)
.+ +.++..+.|++|.+++|++..+ ....-+.|+++....|.+..-+ .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 22 3356677888999988887655 1234477888888888765432 233336
Q ss_pred ccceEEccCCCCCCC-------cCCCCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCchH--HHHHH
Q 020161 229 ALEELYLSHNGISKM-------EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLE--SIVEA 293 (330)
Q Consensus 229 ~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~~--~~~~~ 293 (330)
.|+++.+.+|.|..- .++..+.+|+.|++..|-++.. ..+...+.|++|.+.+|-++.-+ .....
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 788888888888652 3466778899999999888755 34566677889999998877531 12211
Q ss_pred H-hccccccchhhccCCCc
Q 020161 294 V-AGSRETLTTIYLENNPC 311 (330)
Q Consensus 294 ~-~~~~~~L~~l~l~~n~~ 311 (330)
+ -...|+|+.|-..+|-.
T Consensus 266 f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hhhhcCCCccccccchhhh
Confidence 1 12367888888888774
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=1.4e-06 Score=82.44 Aligned_cols=143 Identities=19% Similarity=0.227 Sum_probs=97.7
Q ss_pred CCccEEEcCCcccc---ccccc-cCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCccccccccccccccceEE
Q 020161 163 HDLQILEFGSNRLR---VMENL-QNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKGFEECIALEELY 234 (330)
Q Consensus 163 ~~L~~L~l~~~~~~---~~~~l-~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~ 234 (330)
.+|++|++++...- .+..+ ..+|+|+.|.+.+-.+... -+..+++|..||+++.+++...+++.+.+|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 46788888775331 11222 3467888888888665444 4567788888888888888777777888888887
Q ss_pred ccCCCCCC---CcCCCCCCCCCEEEcCCCCCCCc--------cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccch
Q 020161 235 LSHNGISK---MEGLSTLVNLHVLDVSSNKLTLV--------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303 (330)
Q Consensus 235 l~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 303 (330)
+.+=.+.. +..+..+.+|+.||+|....... +.-..+|.|+.||.+++.+.. ..+......-|+|+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~--~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE--EILEELLNSHPNLQQ 279 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH--HHHHHHHHhCccHhh
Confidence 77766654 34577788888888887654332 334557888888888777664 455666666777777
Q ss_pred hhcc
Q 020161 304 IYLE 307 (330)
Q Consensus 304 l~l~ 307 (330)
+-.-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 6543
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.14 E-value=1.8e-07 Score=80.26 Aligned_cols=272 Identities=17% Similarity=0.100 Sum_probs=173.0
Q ss_pred CCCCCCCcccCCCcccccccCCCcEEeccCccc-ccC---CCCCCCCCcCEEecCCC-CCCC--hhhhhhcCCCCCEEeC
Q 020161 4 DGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQL-HDL---DSVEFPTNLTELDLTAN-RLTS--LDSRISHLSNLKKLSL 76 (330)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l-~~~---~~~~~~~~L~~L~l~~~-~i~~--l~~~~~~l~~L~~L~l 76 (330)
++.+.-+..-..+.....+.+++++|++.++.. ++. ....++++++++++.+| .++. +..--.+|++|.+|++
T Consensus 144 SlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNl 223 (483)
T KOG4341|consen 144 SLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNL 223 (483)
T ss_pred cccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhh
Confidence 344444555556777778899999999988762 221 12356899999999996 5552 3333568999999999
Q ss_pred CCCc-CCccccccchhhcccCCCcEEEccCCcCcCCCC----CCCCCcccEEEccCCCCcCcc---ccccccCCCcEEEc
Q 020161 77 RQNL-IDDAAIEPISRWDALAGLEELILRDNKLMKIPD----VSIFKKLSVFDVSFNEITSSH---GLSNVTDTLKELYV 148 (330)
Q Consensus 77 ~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l 148 (330)
+-+. +++...+.. ...+..++.+.+.+|.-.+... -..+..+..+++..|...... .....+.+++.+..
T Consensus 224 Swc~qi~~~gv~~~--~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~ 301 (483)
T KOG4341|consen 224 SWCPQISGNGVQAL--QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCY 301 (483)
T ss_pred ccCchhhcCcchHH--hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcc
Confidence 9974 444322221 2456667777777764332221 133455666665555432222 22233677888888
Q ss_pred cCCCCCCc---cc-ccCCCCccEEEcCCccc-cc---cccccCCCCCcEEECcCCCcccc-----ccCCCCcccEEECCC
Q 020161 149 SKNEVPKM---EE-IEHFHDLQILEFGSNRL-RV---MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQS 215 (330)
Q Consensus 149 ~~~~~~~~---~~-~~~~~~L~~L~l~~~~~-~~---~~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~~ 215 (330)
+++...+- .. -.++++|+.+.+..+.- +. ..--.++++|+.+++..+..... ....++.++.+.+++
T Consensus 302 s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 302 SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhh
Confidence 88765441 22 35678999999988763 21 12235778999999988754332 345778999999998
Q ss_pred Cccccccc-------cccccccceEEccCCCCCC---CcCCCCCCCCCEEEcCCCC-CCCc---cccccCCCCCeE
Q 020161 216 NRLTSMKG-------FEECIALEELYLSHNGISK---MEGLSTLVNLHVLDVSSNK-LTLV---DDIQNLSRLEDL 277 (330)
Q Consensus 216 ~~l~~~~~-------~~~~~~L~~l~l~~~~~~~---~~~~~~~~~L~~L~l~~n~-~~~~---~~~~~~~~L~~L 277 (330)
+......+ ......++.+.++++.... ++.+..+++|+.+++-+++ ++.. ..-..+|+++..
T Consensus 382 ce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 382 CELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 85433321 2245668888899887654 3567788899999998875 3332 334456666543
No 58
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=4.3e-06 Score=79.15 Aligned_cols=102 Identities=23% Similarity=0.340 Sum_probs=79.2
Q ss_pred cccEEECCCCccccc--cccccccccceEEccCCCCCC-Cc-CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCC
Q 020161 207 CIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-ME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLN 280 (330)
Q Consensus 207 ~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~ 280 (330)
.++.|++++|.+++. +.+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|++++. +.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 478889999988765 357788999999999999975 44 588899999999999999865 668899999999999
Q ss_pred CCCCC-chHHHHHHHhccccccchhhccCCCc
Q 020161 281 DNQIE-SLESIVEAVAGSRETLTTIYLENNPC 311 (330)
Q Consensus 281 ~n~l~-~~~~~~~~~~~~~~~L~~l~l~~n~~ 311 (330)
+|+++ .++..+ .....++..+++.+|+.
T Consensus 499 ~N~l~g~iP~~l---~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAAL---GGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHH---hhccccCceEEecCCcc
Confidence 99988 333222 22234566778888873
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=4e-06 Score=79.47 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCCcEEECcCCCcccc-----ccCCCCcccEEECCCCcccccc---ccccccccceEEccCCCCCCCcCCCCCCCCCEEE
Q 020161 185 TNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKMEGLSTLVNLHVLD 256 (330)
Q Consensus 185 ~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~ 256 (330)
.+|+.|++++.+.-.. .-..+|+|++|.+.+-.+.... -....|+|..||+++++++.+.+.+.+++|++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 3566666665432211 2234566666666665544332 2345566667777777766666666666777776
Q ss_pred cCCCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHH---HHhccccccchhhccCCCcc
Q 020161 257 VSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVE---AVAGSRETLTTIYLENNPCK 312 (330)
Q Consensus 257 l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~ 312 (330)
+.+-.+... ..+-++++|+.||+++.+.......+. +.-..+|.|+.||.+++.+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 666666543 445566677777776665443322222 22334666777766666543
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=7.9e-07 Score=72.60 Aligned_cols=95 Identities=24% Similarity=0.310 Sum_probs=68.6
Q ss_pred CCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCc---CCCCCCCCCEEEcCC
Q 020161 184 LTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME---GLSTLVNLHVLDVSS 259 (330)
Q Consensus 184 ~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~L~~L~l~~ 259 (330)
+.+.+.|++-+++++++ ....++.|+.|.++-|+++.+..+..|..|++|++..|.|.++. -+.++++|+.|.|..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 34566777778888777 45577788888888888888877788888888888888777753 356777788888877
Q ss_pred CCCCCc-------cccccCCCCCeEe
Q 020161 260 NKLTLV-------DDIQNLSRLEDLW 278 (330)
Q Consensus 260 n~~~~~-------~~~~~~~~L~~L~ 278 (330)
|.-.+. ..+..+|+|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 764433 3456677777665
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.79 E-value=1.5e-05 Score=64.77 Aligned_cols=106 Identities=24% Similarity=0.219 Sum_probs=77.4
Q ss_pred CcccEEECCCCccccccccccccccceEEccCCCCCC---CcC-CCCCCCCCEEEcCCCCCCCc---cccccCCCCCeEe
Q 020161 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK---MEG-LSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLW 278 (330)
Q Consensus 206 ~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~---~~~-~~~~~~L~~L~l~~n~~~~~---~~~~~~~~L~~L~ 278 (330)
..++.+++.+..++....+..++.|+.|.++.|.... ++. ...+++|+++++++|++..+ ..+..+++|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 4566677777777877778888899999999884332 332 33458999999999998766 4566777888999
Q ss_pred CCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161 279 LNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 279 l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
+.+|..+.+.+.-..++.-+++|+.++ ++.+.+
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD--~~dv~~ 155 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLD--GCDVDG 155 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhcccc--ccccCC
Confidence 999987766555567777788888654 555443
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=5.2e-06 Score=60.72 Aligned_cols=106 Identities=20% Similarity=0.292 Sum_probs=61.5
Q ss_pred CcCEEecCCCCCCChhhh---hhcCCCCCEEeCCCCcCCccccccchhh-cccCCCcEEEccCCcCcCCCC-CCCCCccc
Q 020161 47 NLTELDLTANRLTSLDSR---ISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELILRDNKLMKIPD-VSIFKKLS 121 (330)
Q Consensus 47 ~L~~L~l~~~~i~~l~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~ 121 (330)
.+..++++.|.+-.++.. +.....|+..++++|.+.+.. ..| ..++..+++++++|.++.+|. +..++.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp----~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFP----KKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCC----HHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 344555666655544443 334445555666666665531 122 234566677777777776664 66667777
Q ss_pred EEEccCCCCcCccccccccCCCcEEEccCCCCCCc
Q 020161 122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM 156 (330)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 156 (330)
.+++..|++...+.....+.++..|+..++...++
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred hcccccCccccchHHHHHHHhHHHhcCCCCccccC
Confidence 77777777766665555555566666666655553
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00055 Score=60.43 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=76.6
Q ss_pred cCCCcEEeccCcccccCCCCCCCCCcCEEecCCC-CCCChhhhhhcCCCCCEEeCCCC-cCCccccccchhhcccCCCcE
Q 020161 23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN-RLTSLDSRISHLSNLKKLSLRQN-LIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~ 100 (330)
..+++.|+++++.+..+| ..|++|++|.+++| .++.+|..+ .++|++|.+++| .+.. + ...|+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-----L-----P~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-----L-----PESVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-----c-----ccccce
Confidence 477888888888888887 56778888888885 555666544 257888888887 3322 1 245777
Q ss_pred EEccCCcCcCCCCCCCC-CcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc
Q 020161 101 LILRDNKLMKIPDVSIF-KKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN 173 (330)
Q Consensus 101 L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (330)
|++.++....++ .+ ++|+.|.+.++........ ...+++|+.|.+.+|....... .-..+|+.|.++.+
T Consensus 117 L~L~~n~~~~L~---~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~-~LP~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIK---NVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPE-KLPESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccc---cCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcc-cccccCcEEEeccc
Confidence 777655433322 12 2456666543321111111 1224667777777766433211 11246777777654
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.0012 Score=58.35 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=80.2
Q ss_pred CCCCcCEEecCCCCCCChhhhhhcCC-CCCEEeCCCCcCCccccccchhhcccCCCcEEEccCC-cCcCCCCCCCCCccc
Q 020161 44 FPTNLTELDLTANRLTSLDSRISHLS-NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN-KLMKIPDVSIFKKLS 121 (330)
Q Consensus 44 ~~~~L~~L~l~~~~i~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~L~ 121 (330)
.+..+++|++++|.++++| .+| +|+.|.++++.-....+. .+ .++|++|.+++| .+..+| .+|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~---~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPG---SI--PEGLEKLTVCHCPEISGLP-----ESVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCc---hh--hhhhhheEccCcccccccc-----cccc
Confidence 3578999999999888887 244 699999988643333222 11 257889999887 666555 3477
Q ss_pred EEEccCCCCcCccccccccCCCcEEEccCCCCCCcccc--cCCCCccEEEcCCccccc-cccccCCCCCcEEECcCC
Q 020161 122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI--EHFHDLQILEFGSNRLRV-MENLQNLTNLQELWLGRN 195 (330)
Q Consensus 122 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-~~~l~~~~~L~~L~l~~~ 195 (330)
.|++..+....+. ..++.|+.|.+.++........ .-.++|++|.+++|.... +..+. .+|+.|.++.+
T Consensus 116 ~L~L~~n~~~~L~---~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDSIK---NVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCcccc---cCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 7777665543322 2345677777654321111111 122578888888776532 22233 47778887665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=7.8e-05 Score=60.64 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=70.0
Q ss_pred CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCC--cCCccccccchhhcccCCCcEEEccCCcCcC---CCCCCCCCcc
Q 020161 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN--LIDDAAIEPISRWDALAGLEELILRDNKLMK---IPDVSIFKKL 120 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~L 120 (330)
..++.+++.+..++++.. +-.+++|+.|.++.| .+.... .+. ...+|.|+++++++|++.. ++++..+++|
T Consensus 43 ~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l--~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGL--EVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccc--eeh-hhhCCceeEEeecCCccccccccchhhhhcch
Confidence 567777888887776633 567889999999998 444421 111 2456899999999998774 4557778889
Q ss_pred cEEEccCCCCcCcccc----ccccCCCcEEEccCC
Q 020161 121 SVFDVSFNEITSSHGL----SNVTDTLKELYVSKN 151 (330)
Q Consensus 121 ~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~ 151 (330)
..|++++|....+... +..+++|.+|+-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 9999999877664433 223677777665443
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.36 E-value=3.2e-05 Score=56.65 Aligned_cols=106 Identities=25% Similarity=0.296 Sum_probs=75.4
Q ss_pred CcEEeccCcccccCCC----CCCCCCcCEEecCCCCCCChhhhhhc-CCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 26 NTVLDLTSFQLHDLDS----VEFPTNLTELDLTANRLTSLDSRISH-LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~----~~~~~~L~~L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
+-.++++.+.+-.++. +.....|+..++++|.+.++|..|.. ++.++.+++++|.+++. +..+..++.|+.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv----PeE~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV----PEELAAMPALRS 104 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc----hHHHhhhHHhhh
Confidence 3456666666655432 22235677788999988888887654 56888899999888875 223566888889
Q ss_pred EEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccc
Q 020161 101 LILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG 135 (330)
Q Consensus 101 L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 135 (330)
|+++.|.+...|. +..+.++-+|+.-.|.+-.++.
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 9998888887665 5567778888887777665553
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.67 E-value=0.0076 Score=44.60 Aligned_cols=94 Identities=24% Similarity=0.459 Sum_probs=35.8
Q ss_pred ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCC
Q 020161 201 NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRL 274 (330)
Q Consensus 201 ~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L 274 (330)
.|..+.+++.+.+..+ +... ..+..++.++.+.+.. .+..+ ..+..+++++.+.+..+ ++.+ ..+.++ .|
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 3444445555555442 3322 2344555566665543 33322 23455666666666543 4433 445555 67
Q ss_pred CeEeCCCCCCCchHHHHHHHhccccccc
Q 020161 275 EDLWLNDNQIESLESIVEAVAGSRETLT 302 (330)
Q Consensus 275 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 302 (330)
+.+.+.. .++.++ ..++.+|++|+
T Consensus 106 ~~i~~~~-~~~~i~---~~~F~~~~~l~ 129 (129)
T PF13306_consen 106 KEINIPS-NITKIE---ENAFKNCTKLK 129 (129)
T ss_dssp -EEE-TT-B-SS-------GGG------
T ss_pred eEEEECC-CccEEC---CccccccccCC
Confidence 7777665 444443 35566666653
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.64 E-value=0.00032 Score=64.68 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=25.8
Q ss_pred CCcccEEEccCCC-CcC--ccccccccCCCcEEEccCCC-CCC--c-ccccCCCCccEEEcCCcc
Q 020161 117 FKKLSVFDVSFNE-ITS--SHGLSNVTDTLKELYVSKNE-VPK--M-EEIEHFHDLQILEFGSNR 174 (330)
Q Consensus 117 ~~~L~~L~l~~~~-~~~--~~~~~~~~~~L~~L~l~~~~-~~~--~-~~~~~~~~L~~L~l~~~~ 174 (330)
+.+|+.++++.+. ++. +..+...+++|+.|.+.+|. +++ + .....++.|++|+++.+.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3455555555554 221 11222224555555555454 222 1 123445556666666543
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.41 E-value=0.013 Score=43.32 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=26.8
Q ss_pred CCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccE
Q 020161 46 TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSV 122 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~ 122 (330)
++|+.+.+.. .+..++.. |.++++|+.+.+..+ +... .-..|..++.++.+.+.. .+..++. +..+++++.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i---~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI---GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE----TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-cccc---ceeeeecccccccccccc-cccccccccccccccccc
Confidence 3455555543 34444432 445555555555443 2222 122344444555555543 2222222 333455555
Q ss_pred EEcc
Q 020161 123 FDVS 126 (330)
Q Consensus 123 L~l~ 126 (330)
+.+.
T Consensus 86 i~~~ 89 (129)
T PF13306_consen 86 IDIP 89 (129)
T ss_dssp EEET
T ss_pred cccC
Confidence 5543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.03 E-value=0.0022 Score=31.23 Aligned_cols=20 Identities=55% Similarity=0.664 Sum_probs=12.4
Q ss_pred CcCEEecCCCCCCChhhhhh
Q 020161 47 NLTELDLTANRLTSLDSRIS 66 (330)
Q Consensus 47 ~L~~L~l~~~~i~~l~~~~~ 66 (330)
+|++|++++|.++.+|..|+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665544
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.02 E-value=0.00017 Score=65.72 Aligned_cols=169 Identities=26% Similarity=0.261 Sum_probs=88.6
Q ss_pred cccEEEccCCCCcCcc-----ccccccCCCcEEEccCCCCCCc------ccccCC-CCccEEEcCCccccc------ccc
Q 020161 119 KLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSKNEVPKM------EEIEHF-HDLQILEFGSNRLRV------MEN 180 (330)
Q Consensus 119 ~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~------~~~~~~-~~L~~L~l~~~~~~~------~~~ 180 (330)
.+.++.+.+|.+.... ......++|..|++++|.+.+. ..+... +.++.|.+..|.++. ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777778887765432 1122256777888888877652 223333 556666666666542 233
Q ss_pred ccCCCCCcEEECcCCCcccc-------c----cCCCCcccEEECCCCccccc------cccccccc-cceEEccCCCCCC
Q 020161 181 LQNLTNLQELWLGRNRIKVV-------N----LCGLKCIKKISLQSNRLTSM------KGFEECIA-LEELYLSHNGISK 242 (330)
Q Consensus 181 l~~~~~L~~L~l~~~~i~~~-------~----~~~~~~L~~L~l~~~~l~~~------~~~~~~~~-L~~l~l~~~~~~~ 242 (330)
+....+++.+++..|.+... . +....++++|.+.+|.++.. ..+...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 44466777777777765422 1 12344555566655555433 11222223 4445555555553
Q ss_pred C------cCCCCC-CCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCch
Q 020161 243 M------EGLSTL-VNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 243 ~------~~~~~~-~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~ 287 (330)
. +.+... +.+++++++.|.+++. ..+..+++++++.+.+|++.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 2 233333 4555666666655543 2234445556666666655543
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.52 E-value=0.00027 Score=64.40 Aligned_cols=217 Identities=22% Similarity=0.233 Sum_probs=137.7
Q ss_pred CcEEEccCCcCcCCC------CCCCCCcccEEEccCCCCcCcc-----cccccc-CCCcEEEccCCCCCCc------ccc
Q 020161 98 LEELILRDNKLMKIP------DVSIFKKLSVFDVSFNEITSSH-----GLSNVT-DTLKELYVSKNEVPKM------EEI 159 (330)
Q Consensus 98 L~~L~l~~~~l~~~~------~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~-~~L~~L~l~~~~~~~~------~~~ 159 (330)
+..+.+.+|.+.... .+...+.|..|++++|.+.... ...... ..++.|.+..|.++.. ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 777888888877422 2566788999999999887321 111112 4566677777777662 335
Q ss_pred cCCCCccEEEcCCcccc------ccccc----cCCCCCcEEECcCCCcccc-------ccCCCCc-ccEEECCCCccccc
Q 020161 160 EHFHDLQILEFGSNRLR------VMENL----QNLTNLQELWLGRNRIKVV-------NLCGLKC-IKKISLQSNRLTSM 221 (330)
Q Consensus 160 ~~~~~L~~L~l~~~~~~------~~~~l----~~~~~L~~L~l~~~~i~~~-------~~~~~~~-L~~L~l~~~~l~~~ 221 (330)
.....++.++++.|.+. ....+ ....++++|.++.+.++.. .+...++ +..+++.+|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 56778888888888762 11222 3467889999998887655 3444444 66688888888755
Q ss_pred ------cccccc-cccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCC
Q 020161 222 ------KGFEEC-IALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDN 282 (330)
Q Consensus 222 ------~~~~~~-~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n 282 (330)
+.+..+ +.++.+++..|.+++. ..+..++.++++.++.|.+... ..+.....+..+.+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 345555 7788999999998874 3456777999999999998876 22334445556666655
Q ss_pred CCCch--HHHHHHHhccccccchhhccCCCcccc
Q 020161 283 QIESL--ESIVEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 283 ~l~~~--~~~~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
...+. ......+............+++...+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (478)
T KOG4308|consen 329 GKGTRGGTSVLAEADAQRQLLSELGISGNRVGEE 362 (478)
T ss_pred CccchhHHHHHHHHHHHhhhhHHHHhhhccchHH
Confidence 43322 123333333334444445555554443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.06 E-value=0.016 Score=26.18 Aligned_cols=16 Identities=69% Similarity=0.873 Sum_probs=6.8
Q ss_pred CcCEEecCCCCCCChh
Q 020161 47 NLTELDLTANRLTSLD 62 (330)
Q Consensus 47 ~L~~L~l~~~~i~~l~ 62 (330)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555443
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.41 E-value=0.016 Score=53.42 Aligned_cols=127 Identities=22% Similarity=0.146 Sum_probs=84.3
Q ss_pred CCCCCcEEECcCC-Ccccc----ccCCCCcccEEECCCC--ccccc-----cccccccccceEEccCCC-CCCC--cCC-
Q 020161 183 NLTNLQELWLGRN-RIKVV----NLCGLKCIKKISLQSN--RLTSM-----KGFEECIALEELYLSHNG-ISKM--EGL- 246 (330)
Q Consensus 183 ~~~~L~~L~l~~~-~i~~~----~~~~~~~L~~L~l~~~--~l~~~-----~~~~~~~~L~~l~l~~~~-~~~~--~~~- 246 (330)
.++.|+.+.+..+ .+.+. ....++.|+.|+++++ ..+.. .....|+.|+.+++.++. +++. ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4678888887765 34432 4567788999998873 11111 234567888999998887 5543 222
Q ss_pred CCCCCCCEEEcCCCC-CCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161 247 STLVNLHVLDVSSNK-LTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (330)
Q Consensus 247 ~~~~~L~~L~l~~n~-~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 310 (330)
..+++|++|.+.+|. +++. .....++.|++|++++|..... ..+......|++++.+.+....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhhcC
Confidence 237889999988887 6655 4456788899999999885533 3334446668887776655443
No 75
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=94.19 E-value=0.026 Score=51.18 Aligned_cols=85 Identities=26% Similarity=0.314 Sum_probs=61.0
Q ss_pred ccccccceEEccCCCCCCCcCCC----CCCCCCEEEcCCC--CCCCccccccC--CCCCeEeCCCCCCCch----HHHHH
Q 020161 225 EECIALEELYLSHNGISKMEGLS----TLVNLHVLDVSSN--KLTLVDDIQNL--SRLEDLWLNDNQIESL----ESIVE 292 (330)
Q Consensus 225 ~~~~~L~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~n--~~~~~~~~~~~--~~L~~L~l~~n~l~~~----~~~~~ 292 (330)
.+.+.+..+.+++|++..++.++ ..|+|+.|+|++| .+....+++.. ..|++|.+.+|++.+- ...+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 35677888889999888876543 3579999999999 56555444433 3589999999997742 33556
Q ss_pred HHhccccccchhhccCCCc
Q 020161 293 AVAGSRETLTTIYLENNPC 311 (330)
Q Consensus 293 ~~~~~~~~L~~l~l~~n~~ 311 (330)
++.+.+|+|..|| |..+
T Consensus 295 ~i~~~FPKL~~LD--G~ev 311 (585)
T KOG3763|consen 295 AIRELFPKLLRLD--GVEV 311 (585)
T ss_pred HHHHhcchheeec--Cccc
Confidence 6677889988754 5554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=0.03 Score=44.23 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=37.9
Q ss_pred ccEEECCCCccccc--cccccccccceEEccCCCCCCC---cCCC-CCCCCCEEEcCCC-CCCCc--cccccCCCCCeEe
Q 020161 208 IKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM---EGLS-TLVNLHVLDVSSN-KLTLV--DDIQNLSRLEDLW 278 (330)
Q Consensus 208 L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~---~~~~-~~~~L~~L~l~~n-~~~~~--~~~~~~~~L~~L~ 278 (330)
++.++.+++.+... ..+..++.++.+.+..|.--+- +-+. -.++|+.|++++| +||+- .++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44444444444322 2344455555555555443221 1111 2356777777766 35543 5566666666666
Q ss_pred CCCCC
Q 020161 279 LNDNQ 283 (330)
Q Consensus 279 l~~n~ 283 (330)
+.+=+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 66543
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=0.1 Score=41.28 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=59.5
Q ss_pred cccceEEccCCCCCC--CcCCCCCCCCCEEEcCCCC-CCCc--cccc-cCCCCCeEeCCCCC-CCchHHHHHHHhccccc
Q 020161 228 IALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNK-LTLV--DDIQ-NLSRLEDLWLNDNQ-IESLESIVEAVAGSRET 300 (330)
Q Consensus 228 ~~L~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~n~-~~~~--~~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~ 300 (330)
..++.++-+++.|.. ++.+..++.++.|.+.+|. +.+. +.++ -.++|+.|++++|+ |++ .-.+-+..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~---~GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD---GGLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech---hHHHHHHHhhh
Confidence 456788888887764 5778888899999998885 4444 3332 45799999999997 664 22455778899
Q ss_pred cchhhccCCC
Q 020161 301 LTTIYLENNP 310 (330)
Q Consensus 301 L~~l~l~~n~ 310 (330)
|+.|.+.+-+
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 9999998877
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.17 E-value=0.3 Score=24.57 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=13.1
Q ss_pred CCCCCeEeCCCCCCCchH
Q 020161 271 LSRLEDLWLNDNQIESLE 288 (330)
Q Consensus 271 ~~~L~~L~l~~n~l~~~~ 288 (330)
+++|+.|++++|+|+.++
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356778888888877765
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.17 E-value=0.3 Score=24.57 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=13.1
Q ss_pred CCCCCeEeCCCCCCCchH
Q 020161 271 LSRLEDLWLNDNQIESLE 288 (330)
Q Consensus 271 ~~~L~~L~l~~n~l~~~~ 288 (330)
+++|+.|++++|+|+.++
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356778888888877765
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.77 E-value=0.42 Score=23.49 Aligned_cols=16 Identities=44% Similarity=0.462 Sum_probs=9.9
Q ss_pred CCCCCeEeCCCCCCCc
Q 020161 271 LSRLEDLWLNDNQIES 286 (330)
Q Consensus 271 ~~~L~~L~l~~n~l~~ 286 (330)
+++|+.|++++|+|++
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 4677888888888774
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.54 E-value=0.56 Score=23.71 Aligned_cols=18 Identities=44% Similarity=0.656 Sum_probs=12.6
Q ss_pred CCcCEEecCCCCCCChhh
Q 020161 46 TNLTELDLTANRLTSLDS 63 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~ 63 (330)
+.|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467777777777777665
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.94 E-value=0.67 Score=23.48 Aligned_cols=16 Identities=38% Similarity=0.628 Sum_probs=11.1
Q ss_pred CCCCeEeCCCCCCCch
Q 020161 272 SRLEDLWLNDNQIESL 287 (330)
Q Consensus 272 ~~L~~L~l~~n~l~~~ 287 (330)
++|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4677777777777654
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=81.97 E-value=0.75 Score=42.16 Aligned_cols=79 Identities=27% Similarity=0.285 Sum_probs=53.0
Q ss_pred CCCCCCCEEEcCCCCCCCcccc----ccCCCCCeEeCCCC--CCCchHHHHHHHhccccccchhhccCCCccccc-----
Q 020161 247 STLVNLHVLDVSSNKLTLVDDI----QNLSRLEDLWLNDN--QIESLESIVEAVAGSRETLTTIYLENNPCKIFK----- 315 (330)
Q Consensus 247 ~~~~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~----- 315 (330)
...+.+..+++++|++-.++.+ ...|+|+.|+|++| .+.+. ..+.. -....|+.|.+.|||+...-
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K--~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDK--LKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhh--hcCCCHHHeeecCCccccchhhhHH
Confidence 3557888999999998877332 34689999999999 55542 22232 23366999999999964332
Q ss_pred cccccccCCCCCC
Q 020161 316 LFCYPQTNFPKYT 328 (330)
Q Consensus 316 ~~~~~~~~~p~~~ 328 (330)
-+......|||+.
T Consensus 292 yv~~i~~~FPKL~ 304 (585)
T KOG3763|consen 292 YVSAIRELFPKLL 304 (585)
T ss_pred HHHHHHHhcchhe
Confidence 2223445677753
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.67 E-value=9.2 Score=34.75 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=13.6
Q ss_pred cCCCCCEEeCCCCcCCccccc
Q 020161 67 HLSNLKKLSLRQNLIDDAAIE 87 (330)
Q Consensus 67 ~l~~L~~L~l~~~~~~~~~~~ 87 (330)
.-+.+++++++.|.+.+..+-
T Consensus 163 pnpr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred CcchhhhhccCCCcccccCCc
Confidence 345677777777776665443
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.64 E-value=2.3 Score=21.82 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=11.3
Q ss_pred CCCCeEeCCCCCCCc
Q 020161 272 SRLEDLWLNDNQIES 286 (330)
Q Consensus 272 ~~L~~L~l~~n~l~~ 286 (330)
++|++|+|++|.+++
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467788888888775
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.90 E-value=7.4 Score=19.35 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=11.3
Q ss_pred CCCCCeEeCCCCC-CCc
Q 020161 271 LSRLEDLWLNDNQ-IES 286 (330)
Q Consensus 271 ~~~L~~L~l~~n~-l~~ 286 (330)
+++|++|++++|. +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 4678888888886 543
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=66.80 E-value=59 Score=29.89 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=18.3
Q ss_pred CCEEEcCCCCCCCc-----cccccCCCCCeEeCCCCCCCch
Q 020161 252 LHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 252 L~~L~l~~n~~~~~-----~~~~~~~~L~~L~l~~n~l~~~ 287 (330)
+..+.++.|..... -.+..-+.+..|++++|...+.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~ 455 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDG 455 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccC
Confidence 45555555555433 1223334556666666655543
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=65.84 E-value=0.17 Score=41.14 Aligned_cols=82 Identities=22% Similarity=0.157 Sum_probs=44.2
Q ss_pred CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEE
Q 020161 45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF 123 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L 123 (330)
.++.+.|+++.|++..+...|.-+..|..|+++.|.+... +..+.....+..+++-.|..+..|- .+..+.++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~----~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFL----PKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhC----hhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 3566666666666665555555555566666666554432 1222333444455555555554443 5556666666
Q ss_pred EccCCCC
Q 020161 124 DVSFNEI 130 (330)
Q Consensus 124 ~l~~~~~ 130 (330)
++.++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 6666653
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=61.94 E-value=0.18 Score=40.96 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=65.7
Q ss_pred hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCC
Q 020161 65 ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143 (330)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 143 (330)
+..+.+.+.|+++.|.+... ...|..++.+..|+++.+.+..+|. ++....++.++...|.....+......+.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~----~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNL----GKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhh----ccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 56788889999998876652 3346677888899999888887774 677777888888888777766655667777
Q ss_pred cEEEccCCCCCC
Q 020161 144 KELYVSKNEVPK 155 (330)
Q Consensus 144 ~~L~l~~~~~~~ 155 (330)
++++..++.+..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 777777776544
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=53.10 E-value=25 Score=20.15 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=17.8
Q ss_pred ccCCCcEEeccCcccccCCCCCCCCCcCEEecC
Q 020161 22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLT 54 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~ 54 (330)
++.++++|.+...--..+.....+++|++|.+.
T Consensus 10 iP~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 10 IPSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred eCCCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 456666666633333334444556666666654
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.46 E-value=56 Score=36.96 Aligned_cols=29 Identities=21% Similarity=0.507 Sum_probs=12.7
Q ss_pred cCCCCCCChhhh-hhcCCCCCEEeCCCCcC
Q 020161 53 LTANRLTSLDSR-ISHLSNLKKLSLRQNLI 81 (330)
Q Consensus 53 l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~ 81 (330)
|++|+|+.|+.. |..+++|+.|+|++|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 344444444432 34444444444444433
Done!