Query 020161
Match_columns 330
No_of_seqs 148 out of 2956
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 12:43:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 100.0 7.3E-34 2.5E-38 249.2 29.6 293 22-327 42-335 (347)
2 4fmz_A Internalin; leucine ric 100.0 1.3E-32 4.4E-37 241.3 27.7 281 20-312 62-346 (347)
3 1o6v_A Internalin A; bacterial 100.0 2.8E-32 9.6E-37 248.3 25.8 284 20-315 64-391 (466)
4 1o6v_A Internalin A; bacterial 100.0 4.9E-31 1.7E-35 240.2 27.3 282 23-315 45-347 (466)
5 2id5_A Lingo-1, leucine rich r 100.0 1.4E-30 4.8E-35 237.9 23.8 294 23-322 31-343 (477)
6 3o6n_A APL1; leucine-rich repe 100.0 4.3E-30 1.5E-34 228.8 25.8 283 23-315 44-355 (390)
7 3v47_A TOLL-like receptor 5B a 100.0 3.5E-30 1.2E-34 233.9 20.3 288 22-315 28-411 (455)
8 3o6n_A APL1; leucine-rich repe 100.0 2.6E-29 8.7E-34 223.7 25.4 279 20-310 65-372 (390)
9 3bz5_A Internalin-J, INLJ; leu 100.0 1E-28 3.6E-33 223.5 29.2 275 21-314 39-354 (457)
10 2id5_A Lingo-1, leucine rich r 100.0 1.9E-29 6.6E-34 230.4 23.2 286 25-317 12-314 (477)
11 3oja_B Anopheles plasmodium-re 100.0 4.7E-29 1.6E-33 233.7 26.0 279 24-315 51-361 (597)
12 3t6q_A CD180 antigen; protein- 100.0 5.6E-29 1.9E-33 233.9 25.3 284 25-315 255-563 (606)
13 1xku_A Decorin; proteoglycan, 100.0 1.7E-28 5.9E-33 213.5 25.8 282 22-310 29-330 (330)
14 3oja_B Anopheles plasmodium-re 100.0 8.3E-29 2.8E-33 232.0 25.2 260 20-286 71-359 (597)
15 3v47_A TOLL-like receptor 5B a 100.0 5.2E-29 1.8E-33 226.2 21.1 285 25-316 11-388 (455)
16 3t6q_A CD180 antigen; protein- 100.0 5.5E-28 1.9E-32 227.2 28.7 293 20-315 125-516 (606)
17 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-28 9.9E-33 212.2 21.3 279 24-310 33-331 (332)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-27 4.1E-32 220.8 25.6 122 24-153 21-150 (520)
19 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-27 4.1E-32 222.2 24.8 151 161-314 332-512 (549)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-27 7.3E-32 221.1 25.9 103 24-132 52-160 (562)
21 4ecn_A Leucine-rich repeat pro 100.0 1.3E-27 4.3E-32 230.0 23.8 296 16-315 440-822 (876)
22 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-27 6.5E-32 223.5 24.4 133 181-316 395-538 (606)
23 4eco_A Uncharacterized protein 100.0 7.3E-28 2.5E-32 227.0 21.1 297 16-316 198-583 (636)
24 4eco_A Uncharacterized protein 100.0 8.7E-28 3E-32 226.5 21.4 287 22-316 247-604 (636)
25 3rgz_A Protein brassinosteroid 100.0 5.4E-28 1.8E-32 232.7 20.3 217 94-313 416-718 (768)
26 2z63_A TOLL-like receptor 4, v 100.0 2.6E-27 8.8E-32 221.0 23.8 172 140-314 346-533 (570)
27 3bz5_A Internalin-J, INLJ; leu 100.0 3.9E-26 1.3E-30 206.7 30.2 278 20-312 60-387 (457)
28 4ecn_A Leucine-rich repeat pro 100.0 3E-27 1E-31 227.4 23.4 290 22-319 489-847 (876)
29 1xku_A Decorin; proteoglycan, 100.0 1E-26 3.5E-31 202.3 23.9 259 46-314 31-308 (330)
30 3rgz_A Protein brassinosteroid 100.0 5.3E-28 1.8E-32 232.8 17.0 286 21-312 244-551 (768)
31 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-27 1.6E-31 216.9 22.3 171 142-315 303-484 (520)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.1E-27 3.1E-31 216.9 24.3 288 18-314 70-512 (562)
33 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-26 1.2E-30 217.7 28.7 291 19-315 267-625 (680)
34 3g06_A SSPH2 (leucine-rich rep 100.0 2.5E-26 8.5E-31 214.2 26.9 258 25-313 41-298 (622)
35 3vq2_A TLR4, TOLL-like recepto 100.0 4E-27 1.4E-31 221.2 21.7 207 114-324 346-570 (606)
36 2z63_A TOLL-like receptor 4, v 100.0 8.7E-27 3E-31 217.4 23.4 111 202-315 392-510 (570)
37 2ft3_A Biglycan; proteoglycan, 100.0 7E-27 2.4E-31 203.5 20.9 257 47-314 34-309 (332)
38 1jl5_A Outer protein YOPM; leu 100.0 5.7E-26 1.9E-30 205.5 27.3 270 24-314 111-411 (454)
39 2z81_A CD282 antigen, TOLL-lik 99.9 6.7E-27 2.3E-31 217.2 19.4 129 24-155 26-162 (549)
40 1ziw_A TOLL-like receptor 3; i 99.9 6.5E-26 2.2E-30 215.8 25.2 283 23-311 24-365 (680)
41 1jl5_A Outer protein YOPM; leu 99.9 2.8E-25 9.7E-30 200.9 28.0 262 26-316 73-354 (454)
42 3j0a_A TOLL-like receptor 5; m 99.9 2.8E-26 9.6E-31 222.9 22.4 287 22-314 22-377 (844)
43 4g8a_A TOLL-like receptor 4; l 99.9 7E-26 2.4E-30 213.7 24.3 130 22-154 50-186 (635)
44 3zyj_A Leucine-rich repeat-con 99.9 3.5E-26 1.2E-30 206.6 20.7 238 23-285 42-292 (440)
45 3zyi_A Leucine-rich repeat-con 99.9 4.3E-26 1.5E-30 206.7 19.9 237 25-286 55-304 (452)
46 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.7E-29 203.1 28.9 237 24-286 61-298 (622)
47 3j0a_A TOLL-like receptor 5; m 99.9 7.2E-26 2.5E-30 220.0 20.7 284 26-316 6-355 (844)
48 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-26 8.2E-31 198.7 12.9 231 45-309 33-272 (317)
49 2z80_A TOLL-like receptor 2, v 99.9 1.9E-25 6.5E-30 196.1 17.9 259 25-287 32-316 (353)
50 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-24 4.8E-29 204.8 24.1 146 26-175 33-185 (635)
51 2z66_A Variable lymphocyte rec 99.9 1.1E-24 3.6E-29 187.5 20.6 263 26-311 9-286 (306)
52 2z80_A TOLL-like receptor 2, v 99.9 1.9E-25 6.6E-30 196.0 15.0 263 45-315 30-317 (353)
53 1ogq_A PGIP-2, polygalacturona 99.9 4.3E-25 1.5E-29 190.4 13.7 239 46-312 50-304 (313)
54 3oja_A Leucine-rich immune mol 99.9 2.5E-24 8.4E-29 196.5 18.7 229 45-307 33-270 (487)
55 1z7x_W Ribonuclease inhibitor; 99.9 1.7E-27 5.7E-32 216.6 -2.7 298 18-315 50-414 (461)
56 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-23 1.1E-27 176.3 22.0 214 27-286 14-239 (285)
57 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-24 5.2E-29 187.0 12.5 217 69-313 50-282 (313)
58 2z66_A Variable lymphocyte rec 99.9 1.1E-23 3.7E-28 181.2 15.8 236 49-315 10-264 (306)
59 1h6u_A Internalin H; cell adhe 99.9 4.2E-23 1.4E-27 177.6 17.5 193 66-286 38-231 (308)
60 1wwl_A Monocyte differentiatio 99.9 2.7E-24 9.2E-29 185.5 8.9 241 45-313 42-310 (312)
61 1h6u_A Internalin H; cell adhe 99.9 5.7E-23 1.9E-27 176.7 16.3 195 93-315 38-233 (308)
62 3o53_A Protein LRIM1, AGAP0063 99.9 9.5E-24 3.3E-28 182.4 11.3 233 47-313 11-251 (317)
63 1z7x_W Ribonuclease inhibitor; 99.9 2.5E-25 8.5E-30 202.3 0.9 300 16-315 20-386 (461)
64 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-22 5.7E-27 172.0 18.1 197 96-316 32-242 (285)
65 1wwl_A Monocyte differentiatio 99.9 5E-24 1.7E-28 183.7 7.9 240 20-263 39-309 (312)
66 3zyj_A Leucine-rich repeat-con 99.9 8.3E-22 2.9E-26 177.9 21.8 215 23-240 63-291 (440)
67 3zyi_A Leucine-rich repeat-con 99.9 8.2E-22 2.8E-26 178.6 21.6 216 22-240 73-302 (452)
68 4fcg_A Uncharacterized protein 99.9 3.7E-22 1.3E-26 173.1 17.2 227 46-288 81-317 (328)
69 4fcg_A Uncharacterized protein 99.9 1.5E-21 5.1E-26 169.3 18.3 229 67-314 79-316 (328)
70 3oja_A Leucine-rich immune mol 99.9 3.9E-22 1.3E-26 182.0 14.3 220 60-313 21-251 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 1.3E-20 4.6E-25 159.5 19.7 215 27-264 10-238 (276)
72 2ca6_A RAN GTPase-activating p 99.9 1.8E-22 6.3E-27 179.2 6.1 148 163-310 159-341 (386)
73 2o6q_A Variable lymphocyte rec 99.9 7.7E-20 2.6E-24 154.2 21.9 193 22-218 14-217 (270)
74 1p9a_G Platelet glycoprotein I 99.9 1.6E-20 5.4E-25 159.9 17.0 195 91-286 5-209 (290)
75 3ogk_B Coronatine-insensitive 99.9 1.1E-22 3.9E-27 190.4 3.7 304 17-327 157-540 (592)
76 2z62_A TOLL-like receptor 4, v 99.8 6.4E-20 2.2E-24 155.2 18.4 211 50-286 11-238 (276)
77 1p9a_G Platelet glycoprotein I 99.8 3.1E-19 1.1E-23 151.9 21.0 193 65-264 6-209 (290)
78 3rfs_A Internalin B, repeat mo 99.8 3.7E-20 1.3E-24 156.3 15.0 206 70-311 20-234 (272)
79 1h6t_A Internalin B; cell adhe 99.8 3.8E-20 1.3E-24 157.7 14.7 170 94-264 44-214 (291)
80 2o6q_A Variable lymphocyte rec 99.8 5.3E-19 1.8E-23 149.1 20.8 193 46-263 16-218 (270)
81 4glp_A Monocyte differentiatio 99.8 4.4E-20 1.5E-24 158.9 14.3 224 69-313 64-308 (310)
82 3ogk_B Coronatine-insensitive 99.8 8.5E-21 2.9E-25 177.7 10.1 287 24-313 138-502 (592)
83 1h6t_A Internalin B; cell adhe 99.8 5.3E-20 1.8E-24 156.9 14.0 187 100-287 28-215 (291)
84 3rfs_A Internalin B, repeat mo 99.8 1.6E-19 5.4E-24 152.5 16.3 171 140-313 40-219 (272)
85 2xwt_C Thyrotropin receptor; s 99.8 1.6E-19 5.6E-24 149.5 14.9 198 36-261 23-237 (239)
86 3goz_A Leucine-rich repeat-con 99.8 2.3E-20 7.8E-25 164.2 8.9 237 51-287 3-299 (362)
87 4glp_A Monocyte differentiatio 99.8 6E-19 2E-23 151.8 17.5 220 46-286 64-308 (310)
88 3goz_A Leucine-rich repeat-con 99.8 6.1E-20 2.1E-24 161.5 9.3 237 29-265 3-299 (362)
89 1m9s_A Internalin B; cell inva 99.8 6.3E-19 2.2E-23 164.1 15.8 188 47-241 22-210 (605)
90 2xwt_C Thyrotropin receptor; s 99.8 1E-18 3.4E-23 144.7 14.9 192 22-216 29-236 (239)
91 3m19_A Variable lymphocyte rec 99.8 5.9E-18 2E-22 141.1 18.7 170 24-197 14-191 (251)
92 2ast_B S-phase kinase-associat 99.8 5.7E-19 1.9E-23 153.7 12.9 214 96-315 70-309 (336)
93 2ca6_A RAN GTPase-activating p 99.8 3.2E-20 1.1E-24 164.8 5.0 221 45-265 31-318 (386)
94 1xeu_A Internalin C; cellular 99.8 9.7E-20 3.3E-24 152.9 7.5 170 116-287 17-187 (263)
95 1m9s_A Internalin B; cell inva 99.8 2.5E-18 8.5E-23 160.1 17.5 169 45-220 42-211 (605)
96 4ay9_X Follicle-stimulating ho 99.8 4.1E-18 1.4E-22 149.1 17.6 232 25-260 10-256 (350)
97 2p1m_B Transport inhibitor res 99.8 3.4E-20 1.2E-24 173.6 4.1 302 20-327 101-533 (594)
98 2p1m_B Transport inhibitor res 99.8 5.4E-21 1.8E-25 179.1 -3.0 289 18-310 150-542 (594)
99 2ast_B S-phase kinase-associat 99.8 2.8E-19 9.6E-24 155.6 7.9 234 46-287 47-308 (336)
100 3cvr_A Invasion plasmid antige 99.8 2.3E-17 8E-22 152.1 20.3 176 97-286 60-244 (571)
101 1xeu_A Internalin C; cellular 99.8 3.5E-19 1.2E-23 149.5 6.3 170 94-265 17-187 (263)
102 3m19_A Variable lymphocyte rec 99.8 6.4E-17 2.2E-21 134.8 18.0 169 46-219 14-192 (251)
103 4ezg_A Putative uncharacterize 99.7 1.2E-17 4E-22 134.0 12.1 146 140-285 43-194 (197)
104 3cvr_A Invasion plasmid antige 99.7 8E-17 2.7E-21 148.6 19.0 175 25-219 60-243 (571)
105 4ay9_X Follicle-stimulating ho 99.7 3E-16 1E-20 137.2 18.4 228 49-282 12-256 (350)
106 4ezg_A Putative uncharacterize 99.7 9.7E-17 3.3E-21 128.6 13.2 149 93-264 41-195 (197)
107 3e6j_A Variable lymphocyte rec 99.7 9.4E-16 3.2E-20 125.8 16.4 150 23-176 18-172 (229)
108 2o6s_A Variable lymphocyte rec 99.7 4.8E-16 1.7E-20 125.7 14.3 163 26-197 9-177 (208)
109 2v9t_B SLIT homolog 2 protein 99.7 6.8E-16 2.3E-20 125.9 15.2 146 26-175 13-164 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-15 4.2E-20 124.3 14.7 147 25-175 12-165 (220)
111 2xot_A Amphoterin-induced prot 99.6 1.1E-15 3.7E-20 134.2 13.1 170 25-198 19-202 (361)
112 2v9t_B SLIT homolog 2 protein 99.6 1E-15 3.5E-20 124.8 11.7 142 144-286 14-166 (220)
113 2o6s_A Variable lymphocyte rec 99.6 9.5E-15 3.2E-19 118.0 15.3 139 164-312 29-178 (208)
114 2xot_A Amphoterin-induced prot 99.6 6.8E-15 2.3E-19 129.1 15.1 168 121-312 21-202 (361)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 2.3E-15 7.7E-20 122.7 11.0 143 143-286 13-167 (220)
116 3e6j_A Variable lymphocyte rec 99.6 3.4E-14 1.2E-18 116.5 15.4 145 48-197 21-171 (229)
117 2wfh_A SLIT homolog 2 protein 99.6 5.6E-14 1.9E-18 112.0 13.8 124 26-153 12-138 (193)
118 1dce_A Protein (RAB geranylger 99.6 4.1E-18 1.4E-22 157.7 -11.9 120 186-305 442-566 (567)
119 1a9n_A U2A', U2A'; complex (nu 99.6 5.4E-15 1.8E-19 116.2 7.5 133 181-313 15-154 (176)
120 2ell_A Acidic leucine-rich nuc 99.5 1.7E-14 5.7E-19 112.5 9.2 130 185-314 24-162 (168)
121 2je0_A Acidic leucine-rich nuc 99.5 2.9E-14 9.8E-19 108.8 9.3 124 185-308 17-149 (149)
122 1w8a_A SLIT protein; signaling 99.5 1.1E-13 3.9E-18 110.2 12.7 125 26-154 10-139 (192)
123 2ell_A Acidic leucine-rich nuc 99.5 2.3E-14 7.9E-19 111.6 7.9 85 44-133 22-110 (168)
124 3sb4_A Hypothetical leucine ri 99.5 1.2E-14 4.3E-19 125.8 6.3 96 205-305 225-327 (329)
125 1dce_A Protein (RAB geranylger 99.5 4.8E-15 1.6E-19 137.2 3.8 189 43-235 346-567 (567)
126 2wfh_A SLIT homolog 2 protein 99.5 5.8E-14 2E-18 111.9 9.6 118 166-285 13-139 (193)
127 2je0_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 108.7 6.8 82 46-132 17-102 (149)
128 1w8a_A SLIT protein; signaling 99.5 7.1E-14 2.4E-18 111.3 9.0 120 165-286 10-140 (192)
129 3sb4_A Hypothetical leucine ri 99.5 2E-13 6.8E-18 118.2 12.4 95 183-279 224-328 (329)
130 2o6r_A Variable lymphocyte rec 99.5 7.5E-13 2.6E-17 103.9 14.0 127 25-155 8-138 (177)
131 2o6r_A Variable lymphocyte rec 99.5 4.4E-13 1.5E-17 105.3 11.4 123 164-287 8-139 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.5 9.7E-14 3.3E-18 109.0 7.3 125 45-175 18-152 (176)
133 4fdw_A Leucine rich hypothetic 99.4 3E-12 1E-16 113.5 16.2 253 44-312 111-383 (401)
134 3g39_A Variable lymphocyte rec 99.4 4.6E-12 1.6E-16 98.7 11.9 106 25-134 10-118 (170)
135 2r9u_A Variable lymphocyte rec 99.3 9.6E-12 3.3E-16 97.2 12.1 107 25-135 13-122 (174)
136 1ds9_A Outer arm dynein; leuci 99.3 7.4E-15 2.5E-19 117.7 -7.1 133 180-314 43-187 (198)
137 4fdw_A Leucine rich hypothetic 99.3 2.5E-10 8.5E-15 101.1 20.3 249 24-285 113-383 (401)
138 1ds9_A Outer arm dynein; leuci 99.3 6.5E-14 2.2E-18 112.2 -3.7 123 47-175 24-152 (198)
139 3un9_A NLR family member X1; l 99.2 1.1E-12 3.8E-17 115.1 1.8 148 140-287 71-254 (372)
140 3un9_A NLR family member X1; l 99.2 1.4E-12 4.7E-17 114.6 1.4 148 118-265 72-254 (372)
141 4b8c_D Glucose-repressible alc 99.2 3.5E-11 1.2E-15 114.7 10.7 106 46-155 224-330 (727)
142 4b8c_D Glucose-repressible alc 99.2 2.9E-11 9.8E-16 115.3 9.6 151 22-176 171-329 (727)
143 3g39_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 91.0 10.8 103 47-154 10-115 (170)
144 2r9u_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 91.1 10.8 102 48-154 14-118 (174)
145 4fs7_A Uncharacterized protein 99.2 5E-10 1.7E-14 99.3 16.2 102 201-309 271-376 (394)
146 4fs7_A Uncharacterized protein 99.1 1.2E-09 4.1E-14 96.8 15.7 275 18-304 65-393 (394)
147 4gt6_A Cell surface protein; l 99.1 1.6E-08 5.6E-13 89.5 20.0 104 201-310 260-368 (394)
148 2ifg_A High affinity nerve gro 99.0 1E-09 3.5E-14 95.5 11.0 106 27-135 11-120 (347)
149 2ifg_A High affinity nerve gro 99.0 2.4E-09 8.2E-14 93.1 9.8 103 49-155 11-117 (347)
150 4gt6_A Cell surface protein; l 98.9 3.5E-07 1.2E-11 80.9 21.5 271 24-310 64-389 (394)
151 1io0_A Tropomodulin; LRR prote 98.8 3.3E-09 1.1E-13 83.6 3.9 105 181-285 32-164 (185)
152 4h09_A Hypothetical leucine ri 98.7 3.1E-06 1.1E-10 74.3 22.3 132 182-320 214-353 (379)
153 1io0_A Tropomodulin; LRR prote 98.7 6E-09 2.1E-13 82.1 4.3 114 201-314 31-166 (185)
154 2ra8_A Uncharacterized protein 98.6 2.7E-08 9.3E-13 86.6 6.1 187 118-310 107-341 (362)
155 4h09_A Hypothetical leucine ri 98.6 4.6E-06 1.6E-10 73.2 19.2 261 45-320 45-330 (379)
156 2ra8_A Uncharacterized protein 98.6 9.6E-08 3.3E-12 83.2 6.9 166 115-283 136-341 (362)
157 3e4g_A ATP synthase subunit S, 98.5 2.1E-08 7.4E-13 77.2 1.1 98 228-328 61-170 (176)
158 3rw6_A Nuclear RNA export fact 98.5 2.4E-07 8.3E-12 76.7 6.6 81 225-305 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 2E-07 6.7E-12 71.8 2.3 97 207-303 62-171 (176)
160 3rw6_A Nuclear RNA export fact 97.9 8.9E-06 3E-10 67.3 5.2 76 203-278 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 6.5E-06 2.2E-10 64.6 4.1 104 182-285 38-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 2.8E-05 9.4E-10 61.0 5.3 111 202-312 37-170 (197)
163 3rfe_A Platelet glycoprotein I 97.6 0.00017 5.8E-09 52.7 6.5 57 26-83 10-69 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.00049 1.7E-08 50.2 2.4 54 231-285 11-68 (130)
165 2lz0_A Uncharacterized protein 56.0 10 0.00036 25.5 3.3 44 58-105 8-52 (100)
166 2lz0_A Uncharacterized protein 51.3 6.6 0.00022 26.5 1.6 37 245-282 15-53 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.3e-34 Score=249.20 Aligned_cols=293 Identities=25% Similarity=0.360 Sum_probs=259.5
Q ss_pred ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161 22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 101 (330)
..+++++|+++++.+..++.+..+++|++|++++|.+..++. +.++++|++|++++|.+... ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEE
Confidence 567899999999999999888889999999999999999887 89999999999999988873 357789999999
Q ss_pred EccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccc
Q 020161 102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL 181 (330)
Q Consensus 102 ~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l 181 (330)
++++|.+..++.+..+++|++|++++|...........+++|+.|++++|.+.....+..+++|++|++++|.+.....+
T Consensus 116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (347)
T 4fmz_A 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPL 195 (347)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGG
T ss_pred ECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccc
Confidence 99999999888888999999999999965554444566899999999999998877789999999999999999877678
Q ss_pred cCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCC
Q 020161 182 QNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n 260 (330)
..+++|+.+++++|.+.+. .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+++++.+..+++|++|++++|
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred cCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC
Confidence 8999999999999998877 578889999999999999988778899999999999999999988999999999999999
Q ss_pred CCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccccccccccCCCCC
Q 020161 261 KLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKY 327 (330)
Q Consensus 261 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~p~~ 327 (330)
++++++.+..+++|++|++++|++++.+ +..+..+++|+.|++++|++.+... -+.+|++
T Consensus 276 ~l~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L 335 (347)
T 4fmz_A 276 QISDISVLNNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFLSQNHITDIRP----LASLSKM 335 (347)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCGGG---HHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTC
T ss_pred ccCCChhhcCCCCCCEEECcCCcCCCcC---hhHhhccccCCEEEccCCccccccC----hhhhhcc
Confidence 9999988899999999999999998653 4567789999999999999888754 3345554
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.3e-32 Score=241.27 Aligned_cols=281 Identities=22% Similarity=0.326 Sum_probs=250.1
Q ss_pred ccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161 20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (330)
Q Consensus 20 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 99 (330)
+...+++++|+++++.+.+++....+++|++|++++|.+..++ .+.++++|++|++++|.+.... .+..+++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~-----~~~~l~~L~ 135 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDIS-----PLANLTKMY 135 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCG-----GGTTCTTCC
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCch-----hhccCCcee
Confidence 5668899999999999999888788899999999999999886 4899999999999999988742 267899999
Q ss_pred EEEccCC-cCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc
Q 020161 100 ELILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM 178 (330)
Q Consensus 100 ~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 178 (330)
+|++++| .+..++.+..+++|++|++++|.+..... ...+++|+.|++++|.+.....+..+++|+.+++++|.+...
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCC
Confidence 9999999 45556668899999999999999887766 455889999999999999887789999999999999999876
Q ss_pred ccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEc
Q 020161 179 ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV 257 (330)
Q Consensus 179 ~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l 257 (330)
..+..+++|++|++++|.+... .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+++++.+..+++|++|++
T Consensus 215 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence 6688999999999999998877 588899999999999999998888999999999999999999988999999999999
Q ss_pred CCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161 258 SSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312 (330)
Q Consensus 258 ~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 312 (330)
++|++++. ..+..+++|++|++++|++++++. +..+++|+.|++++|+++
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSCC---
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC-----hhhhhccceeehhhhccc
Confidence 99999876 568899999999999999997653 678999999999999975
No 3
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-32 Score=248.34 Aligned_cols=284 Identities=25% Similarity=0.358 Sum_probs=169.6
Q ss_pred ccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161 20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (330)
Q Consensus 20 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 99 (330)
+...+++++|+++++.+.+++....+++|++|++++|.+..+++ +..+++|++|++++|.+.+.. .+..+++|+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~ 137 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID-----PLKNLTNLN 137 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCS
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh-----HHcCCCCCC
Confidence 44567788888888888877666667788888888887777766 777777888887777766642 144455556
Q ss_pred EEEccCCcCcCCCC---------------------CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCC----
Q 020161 100 ELILRDNKLMKIPD---------------------VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP---- 154 (330)
Q Consensus 100 ~L~l~~~~l~~~~~---------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---- 154 (330)
+|++++|.+..++. +..+++|++|++++|.+..+.. ...+++|+.|++++|.+.
T Consensus 138 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG
T ss_pred EEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc
Confidence 66555555443321 2334455555555555544332 222444555555555444
Q ss_pred ------------------CcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCC
Q 020161 155 ------------------KMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQS 215 (330)
Q Consensus 155 ------------------~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~ 215 (330)
.+..+..+++|+.|++++|.+.....+..+++|++|++++|.+... .+..+++|+.|++++
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCC
Confidence 4444444455555555555544333345555555555555555444 345555566666666
Q ss_pred CccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHh
Q 020161 216 NRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVA 295 (330)
Q Consensus 216 ~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 295 (330)
|.+++.+.+..+++|+.|++++|.+++++.+..+++|++|++++|++++.+.+..+++|+.|++++|+++++. + +
T Consensus 297 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~--~ 371 (466)
T 1o6v_A 297 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLT---P--L 371 (466)
T ss_dssp SCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---G--G
T ss_pred CcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccc---h--h
Confidence 6555555455566666666666666665545566666666666666666666666667777777777666543 1 4
Q ss_pred ccccccchhhccCCCccccc
Q 020161 296 GSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 296 ~~~~~L~~l~l~~n~~~~~~ 315 (330)
..+++|+.|++++|++...+
T Consensus 372 ~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 372 ANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp TTCTTCCEEECCCEEEECCC
T ss_pred hcCCCCCEEeccCCcccCCc
Confidence 66677777777777666543
No 4
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.9e-31 Score=240.17 Aligned_cols=282 Identities=27% Similarity=0.378 Sum_probs=215.9
Q ss_pred cCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161 23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 102 (330)
..+++.|++.++.+..++....+++|++|++++|.+..+++ +.++++|++|++++|.+.+.. .+..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-----PLANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccCh-----hhcCCCCCCEEE
Confidence 46799999999999999988889999999999999999887 999999999999999998753 267899999999
Q ss_pred ccCCcCcCCCCCCCCCcccEEEccCCCCcCcccc--------------------ccccCCCcEEEccCCCCCCcccccCC
Q 020161 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL--------------------SNVTDTLKELYVSKNEVPKMEEIEHF 162 (330)
Q Consensus 103 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~L~~L~l~~~~~~~~~~~~~~ 162 (330)
+++|.++.++++..+++|++|++++|.+..++.. ...+++|+.|++++|.+..+..+..+
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l 198 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 198 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccC
Confidence 9999999988888999999999999987765431 11245566666666666665556666
Q ss_pred CCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCC
Q 020161 163 HDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS 241 (330)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~ 241 (330)
++|++|++++|.+.....+..+++|++|++++|.+.+. .+..+++|+.|++++|.+++.+.+..++.|+.|++++|.++
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 278 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC
Confidence 66666666666665444456666677777777666655 55566777777777777776655667777777777777777
Q ss_pred CCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 242 KMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 242 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
+++.+..+++|+.|++++|++++.+.+..+++|+.|++++|++++++. +..+++|+.|++++|++.+.+
T Consensus 279 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 279 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCCCCG
T ss_pred ccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCCccCCch
Confidence 766677777777888877777777667777788888888887776542 466788888888888776653
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=237.89 Aligned_cols=294 Identities=23% Similarity=0.298 Sum_probs=234.8
Q ss_pred cCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCCh-hhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161 23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 99 (330)
..++++|+++++.+.+++. ...+++|++|++++|.+..+ +..|.++++|++|++++|.+.... ...|..+++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP---LGVFTGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC---TTSSTTCTTCC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC---cccccCCCCCC
Confidence 4678899999888888754 44568899999999988876 456888899999999998887752 23456788899
Q ss_pred EEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcc
Q 020161 100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNR 174 (330)
Q Consensus 100 ~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~ 174 (330)
+|++++|.+..+++ +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+ ..+..+++|+.|++++|.
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 99999988886543 77888999999999888776543 33478899999999888774 347888899999999888
Q ss_pred cccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc--C
Q 020161 175 LRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--G 245 (330)
Q Consensus 175 ~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~--~ 245 (330)
+... ..+..+++|+.|++++|..... ......+|+.|++++|.++..+ .+..+++|+.|++++|.+++++ .
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 7533 3577888999999988764433 2333458999999999998875 4778999999999999999864 4
Q ss_pred CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccccccccc
Q 020161 246 LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQT 322 (330)
Q Consensus 246 ~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 322 (330)
+..+++|++|++++|++++. ..+..+++|++|++++|.++.++ +..+..+++|+.|++++|++.+.....|...
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~ 343 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLILDSNPLACDCRLLWVFR 343 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC---GGGBSCGGGCCEEECCSSCEECSGGGHHHHT
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC---HhHcCCCcccCEEEccCCCccCccchHhHHh
Confidence 78899999999999999987 56889999999999999999775 4567889999999999999876655555433
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.3e-30 Score=228.75 Aligned_cols=283 Identities=22% Similarity=0.278 Sum_probs=177.9
Q ss_pred cCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161 23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 99 (330)
..++++++++++.+..+|. ...+++|++|++++|.+..++. .+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP---HVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH---HHhcCCCCCC
Confidence 3677888888888887775 2346788888888888887765 57788888888888888777532 3456678888
Q ss_pred EEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc
Q 020161 100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR 176 (330)
Q Consensus 100 ~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 176 (330)
+|++++|.++.+|. +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+... .+..+++|+.+++++|.++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeeccccccc
Confidence 88888888887775 56788888888888887776543 33467888888888877664 2445566666666665543
Q ss_pred cccc------------------ccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccc--cccccccccceEEc
Q 020161 177 VMEN------------------LQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYL 235 (330)
Q Consensus 177 ~~~~------------------l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l 235 (330)
.... ....++|+.|++++|.+.+. .+..+++|+.|++++|.+++. ..+..+++|+.|++
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 2110 01123455555555554444 344455555555555555544 23445555555555
Q ss_pred cCCCCCCCcC-CCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161 236 SHNGISKMEG-LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 236 ~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
++|.+++++. ...+++|++|++++|+++.+ ..+..+++|++|++++|+++.++ +..+++|+.|++++|++.+
T Consensus 280 ~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC------chhhccCCEEEcCCCCccc
Confidence 5555555432 33455666666666665555 33455556666666666665542 4555666666666666555
Q ss_pred cc
Q 020161 314 FK 315 (330)
Q Consensus 314 ~~ 315 (330)
..
T Consensus 354 ~~ 355 (390)
T 3o6n_A 354 NS 355 (390)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3.5e-30 Score=233.94 Aligned_cols=288 Identities=19% Similarity=0.267 Sum_probs=218.4
Q ss_pred ccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCC-Chhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCC
Q 020161 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~-~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 97 (330)
..+++++|+++++.+.++++ ...+++|++|++++|.+. .++. .|.++++|++|++++|.+....+ ..+..+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET---GAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT---TTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh---hhccCccc
Confidence 45788889998888887643 455788888888888876 4543 57888888888888888877533 34566888
Q ss_pred CcEEEccCCcCcC--CCC--CCCCCcccEEEccCCCCcCcccc--ccccCCCcEEEccCCCCCCc--ccc----------
Q 020161 98 LEELILRDNKLMK--IPD--VSIFKKLSVFDVSFNEITSSHGL--SNVTDTLKELYVSKNEVPKM--EEI---------- 159 (330)
Q Consensus 98 L~~L~l~~~~l~~--~~~--~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~~---------- 159 (330)
|++|++++|.+++ .+. +..+++|++|++++|.+....+. ...+++|+.|++++|.+.+. ..+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 8888888888875 222 67788888888888888776543 34478888888888876652 112
Q ss_pred ------------------------cCCCCccEEEcCCccccc--cccc--------------------------------
Q 020161 160 ------------------------EHFHDLQILEFGSNRLRV--MENL-------------------------------- 181 (330)
Q Consensus 160 ------------------------~~~~~L~~L~l~~~~~~~--~~~l-------------------------------- 181 (330)
..+++|++|++++|.+.. +..+
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 233567888888776531 0000
Q ss_pred -----c--CCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCC--cCCC
Q 020161 182 -----Q--NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLS 247 (330)
Q Consensus 182 -----~--~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~ 247 (330)
. ..++|+.|++++|.+.+. .+..+++|+.|++++|.+++.+ .+..++.|+.|++++|.++++ ..+.
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 0 125788888888887765 4777889999999999988773 577889999999999999876 3578
Q ss_pred CCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 248 TLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 248 ~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
.+++|++|++++|++++. ..+..+++|++|++++|+++.++ +..+..+++|+.|++++|++.+..
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC---HhHhccCCcccEEEccCCCcccCC
Confidence 899999999999999877 56888999999999999999765 345678899999999999976654
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.6e-29 Score=223.75 Aligned_cols=279 Identities=20% Similarity=0.265 Sum_probs=219.9
Q ss_pred ccccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccC
Q 020161 20 VEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALA 96 (330)
Q Consensus 20 ~~~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 96 (330)
+...+++++|+++++.+.+++. ...+++|++|++++|.+..+++. +.++++|++|++++|.+.... ...|..++
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~---~~~~~~l~ 141 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP---RGIFHNTP 141 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCT
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC---HHHhcCCC
Confidence 4556889999999999988764 45578999999999999987654 889999999999999888642 23356789
Q ss_pred CCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCc-------------------EEEccCCCCCC
Q 020161 97 GLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK-------------------ELYVSKNEVPK 155 (330)
Q Consensus 97 ~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~-------------------~L~l~~~~~~~ 155 (330)
+|++|++++|.+..+++ +..+++|++|++++|.+.... ...+++|+ .|++++|.+..
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCE
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeee
Confidence 99999999999987764 788899999999999887653 22234444 45555544444
Q ss_pred cccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc-cccccccc
Q 020161 156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG-FEECIALE 231 (330)
Q Consensus 156 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~ 231 (330)
.. ....++|+.|++++|.++....+..+++|++|++++|.+.+. .+..+++|+.|++++|.++..+. ...+++|+
T Consensus 220 ~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 298 (390)
T 3o6n_A 220 VR-GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298 (390)
T ss_dssp EE-CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCC
T ss_pred cc-ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCC
Confidence 31 123468999999999988778889999999999999998876 67889999999999999988853 45789999
Q ss_pred eEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161 232 ELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (330)
Q Consensus 232 ~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 310 (330)
.|++++|.++.++ .+..+++|++|++++|+++.++ +..+++|+.|++++|++... .....+.. +....+..++
T Consensus 299 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~~~--~~~~~~~~---~~~~~~~~~~ 372 (390)
T 3o6n_A 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCN--SLRALFRN---VARPAVDDAD 372 (390)
T ss_dssp EEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHH--HHHHHTTT---CCTTTBCCCC
T ss_pred EEECCCCcceecCccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCCCccch--hHHHHHHH---HHhhcccccC
Confidence 9999999999874 4667899999999999999886 67889999999999999863 23344443 4444455554
No 9
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1e-28 Score=223.55 Aligned_cols=275 Identities=23% Similarity=0.251 Sum_probs=183.0
Q ss_pred cccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 21 ~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
...+++++|+++++.+.+++.+..+++|++|++++|.+++++ +..+++|++|++++|.+.+. + +..+++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~---~---~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL---D---VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC---C---CTTCTTCCE
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee---e---cCCCCcCCE
Confidence 345677888888888877776666778888888888887774 67778888888888877764 1 456777888
Q ss_pred EEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccccc
Q 020161 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN 180 (330)
Q Consensus 101 L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 180 (330)
|++++|.++.++ +..+++|++|++++|.+.+++ ...+++|+.|++++|...+...+..+++|+.|++++|.++.++
T Consensus 111 L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 111 LNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-
T ss_pred EECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-
Confidence 888888777765 677778888888888777653 3345667777777774333224566667777777777665543
Q ss_pred ccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcC---------------
Q 020161 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--------------- 245 (330)
Q Consensus 181 l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~--------------- 245 (330)
+..+++|+.|++++|.+....+..+++|+.|++++|.+++.+ +..++.|+.|++++|.+++++.
T Consensus 187 l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~ 265 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD 265 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCC
T ss_pred cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCC
Confidence 556666666666666666666666666666666666666655 5556666666666666655420
Q ss_pred ----------------CCCCCCCCEEEcCCCCCCCc----------cccccCCCCCeEeCCCCCCCchHHHHHHHhcccc
Q 020161 246 ----------------LSTLVNLHVLDVSSNKLTLV----------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299 (330)
Q Consensus 246 ----------------~~~~~~L~~L~l~~n~~~~~----------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 299 (330)
...+++|+.|++++|...+. -.+..+++|++|++++|+++.++ +..|+
T Consensus 266 L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~------l~~l~ 339 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD------VSHNT 339 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC------CTTCT
T ss_pred CCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc------cccCC
Confidence 12234555555555542211 02455667788888888877652 56778
Q ss_pred ccchhhccCCCcccc
Q 020161 300 TLTTIYLENNPCKIF 314 (330)
Q Consensus 300 ~L~~l~l~~n~~~~~ 314 (330)
+|+.|++++|++.++
T Consensus 340 ~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 340 KLKSLSCVNAHIQDF 354 (457)
T ss_dssp TCSEEECCSSCCCBC
T ss_pred cCcEEECCCCCCCCc
Confidence 888888888887664
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=230.39 Aligned_cols=286 Identities=21% Similarity=0.284 Sum_probs=243.9
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
..+.+++++..+..+|. ..++++++|++++|.+..+++ .|.++++|++|++++|.+.... ...|..+++|++|++
T Consensus 12 ~~~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE---PGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTTEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC---hhhhhCCccCCEEEC
Confidence 34678999999999886 677899999999999998864 6999999999999999998863 345778999999999
Q ss_pred cCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcccccc
Q 020161 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVM 178 (330)
Q Consensus 104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 178 (330)
++|.++.++. +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+ ..+..+++|+.|++++|.++..
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 9999998875 68899999999999999877543 44489999999999998774 4688999999999999998744
Q ss_pred --ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCC
Q 020161 179 --ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTL 249 (330)
Q Consensus 179 --~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~ 249 (330)
..+..+++|+.|++++|.+... .+..+++|+.|++++|...+. +......+|+.|++++|.+++++ .+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 3478899999999999988776 678889999999999865443 23334559999999999999886 57889
Q ss_pred CCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccccc
Q 020161 250 VNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLF 317 (330)
Q Consensus 250 ~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 317 (330)
++|+.|++++|+++.. ..+..+++|++|++++|+++.+. +..+..+++|+.|++++|.++.....
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE---PYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC---TTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC---HHHhcCcccCCEEECCCCcCceeCHh
Confidence 9999999999999977 45889999999999999999764 45678899999999999998876643
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=4.7e-29 Score=233.69 Aligned_cols=279 Identities=22% Similarity=0.293 Sum_probs=169.6
Q ss_pred CCCcEEeccCcccccCCCC--CCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 24 LSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~--~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
.+++.++++++.+..+|.. ..+++|++|++++|.+..+++ .|..+++|++|++++|.+.+.. ...|..+++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC---HHHHcCCCCCCE
Confidence 4567777777777777652 335778888888887776655 5777778888888887777653 234556777888
Q ss_pred EEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccc
Q 020161 101 LILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV 177 (330)
Q Consensus 101 L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 177 (330)
|++++|.++.+|. +..+++|++|++++|.+..+++. ...+++|+.|++++|.+... .+..+++|+.+++++|.++.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCcccc
Confidence 8888877777765 46777788888888777766553 33467777888877776664 24445566666666655432
Q ss_pred cccccCC---------------------CCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccc--cccccccccceE
Q 020161 178 MENLQNL---------------------TNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEEL 233 (330)
Q Consensus 178 ~~~l~~~---------------------~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l 233 (330)
. ... ++|+.|++++|.+.+. .+..+++|+.|++++|.+++. ..+..+++|+.|
T Consensus 207 l---~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 207 L---AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp E---ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred c---cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 1 222 3455555555544443 344455555555555555544 234455555555
Q ss_pred EccCCCCCCCcC-CCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCc
Q 020161 234 YLSHNGISKMEG-LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311 (330)
Q Consensus 234 ~l~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~ 311 (330)
++++|.+++++. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|+++.++ +..+++|+.|++++|++
T Consensus 284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCE
T ss_pred ECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeCCCC
Confidence 555555555432 23355566666666655555 33455555666666666655442 45556666666666665
Q ss_pred cccc
Q 020161 312 KIFK 315 (330)
Q Consensus 312 ~~~~ 315 (330)
.+..
T Consensus 358 ~~~~ 361 (597)
T 3oja_B 358 DCNS 361 (597)
T ss_dssp EHHH
T ss_pred CChh
Confidence 5543
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=5.6e-29 Score=233.92 Aligned_cols=284 Identities=26% Similarity=0.332 Sum_probs=242.9
Q ss_pred CCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161 25 SNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 102 (330)
++++++++++.+.+++. ...+++|++|++++|.++.+|..+.++++|++|++++|.+....+ ..+..+++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ---ISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG---GCGGGCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch---hhhhccCcCCEEE
Confidence 78999999999999876 445789999999999999999989999999999999999988633 3566789999999
Q ss_pred ccCCcCc-CCCC--CCCCCcccEEEccCCCCcCcc---ccccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcc
Q 020161 103 LRDNKLM-KIPD--VSIFKKLSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNR 174 (330)
Q Consensus 103 l~~~~l~-~~~~--~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~ 174 (330)
+++|.+. .++. +..+++|++|++++|.+.... .....+++|+.|++++|.+... ..+..+++|++|++++|.
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 9999887 4553 788999999999999998764 2344589999999999988763 568889999999999998
Q ss_pred cccc---ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc-----cccccccccceEEccCCCCCCC
Q 020161 175 LRVM---ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-----KGFEECIALEELYLSHNGISKM 243 (330)
Q Consensus 175 ~~~~---~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~L~~l~l~~~~~~~~ 243 (330)
+... ..+..+++|++|++++|.+... .+..+++|++|++++|.+++. ..+..+++|+.|++++|.++++
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 8632 3378899999999999988765 577889999999999998763 3477899999999999999986
Q ss_pred --cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 244 --EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 244 --~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
..+..+++|++|++++|++++. ..+..++.| +|++++|+++.++ +..+..+++|+.+++++|++.+..
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL---PSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC---GGGHHHHHTSSEEECTTCCEECSG
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC---HhhcccCCCCCEEeCCCCCccccC
Confidence 4688999999999999999977 578899999 9999999999664 445667899999999999976543
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.7e-28 Score=213.52 Aligned_cols=282 Identities=22% Similarity=0.312 Sum_probs=230.6
Q ss_pred ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
...++++++++++.+..+|. ..++++++|++++|.++.++. .+.++++|++|++++|.+....+ ..+..+++|++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~ 104 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP---GAFAPLVKLER 104 (330)
T ss_dssp CEEETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT---TTTTTCTTCCE
T ss_pred CcCCCeEEEecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH---HHhcCCCCCCE
Confidence 34578999999999998885 567899999999999998876 58999999999999999988643 45677999999
Q ss_pred EEccCCcCcCCCCCCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCC----cccccCCCCccEEEcCCccc
Q 020161 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 101 L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~~ 175 (330)
|++++|.++.+|. ...++|++|++++|.+..+... ...+++|+.|++++|.+.. ...+..+++|++|++++|.+
T Consensus 105 L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 105 LYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp EECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCh-hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 9999999998876 2238999999999999877654 3448899999999998854 35678899999999999998
Q ss_pred cccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc-CCCCC
Q 020161 176 RVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-GLSTL 249 (330)
Q Consensus 176 ~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-~~~~~ 249 (330)
+.++... .++|++|++++|.+... .+..+++|+.|++++|.+++.+ .+..+++|+.|++++|.++.++ .+..+
T Consensus 184 ~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 262 (330)
T 1xku_A 184 TTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262 (330)
T ss_dssp CSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC
T ss_pred ccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccC
Confidence 6443211 27899999999998876 5788899999999999998774 5788999999999999999875 57888
Q ss_pred CCCCEEEcCCCCCCCcc--ccc------cCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161 250 VNLHVLDVSSNKLTLVD--DIQ------NLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (330)
Q Consensus 250 ~~L~~L~l~~n~~~~~~--~~~------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 310 (330)
++|++|++++|+++.++ .+. ..+.++.+++.+|++... ++.+..+..+++++.+++++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~-~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW-EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG-GSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc-ccCccccccccceeEEEecccC
Confidence 99999999999998772 222 246889999999998753 2334568889999999999884
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=8.3e-29 Score=232.01 Aligned_cols=260 Identities=20% Similarity=0.272 Sum_probs=213.0
Q ss_pred ccccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccC
Q 020161 20 VEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALA 96 (330)
Q Consensus 20 ~~~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 96 (330)
+...+++++|+++++.+.++++ ...+++|++|++++|.+..+++. |.++++|++|++++|.+.... ...|..++
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~---~~~~~~l~ 147 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP---RGIFHNTP 147 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCT
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC---HHHhccCC
Confidence 4456789999999999998864 55678999999999999988764 789999999999999988752 23356789
Q ss_pred CCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCC-------------------CC
Q 020161 97 GLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEV-------------------PK 155 (330)
Q Consensus 97 ~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------~~ 155 (330)
+|++|++++|.++.+++ +..+++|++|++++|.+..++ ...+++|+.|++++|.+ ..
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 99999999999998764 788999999999999887653 22245555555555544 33
Q ss_pred cccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc-cccccccc
Q 020161 156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG-FEECIALE 231 (330)
Q Consensus 156 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~ 231 (330)
+.. ...++|+.|++++|.++.+..+..+++|+.|++++|.+.+. .+..+++|+.|++++|.+++.+. +..+++|+
T Consensus 226 ~~~-~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 304 (597)
T 3oja_B 226 VRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 304 (597)
T ss_dssp EEC-SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCC
T ss_pred ccc-ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCc
Confidence 211 22357889999999888778889999999999999998876 67889999999999999998854 45689999
Q ss_pred eEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCc
Q 020161 232 ELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 232 ~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~ 286 (330)
.|++++|.++.++ .+..+++|+.|++++|.++..+ +..+++|+.|++++|++..
T Consensus 305 ~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCCCCC
Confidence 9999999999875 4677899999999999999885 6788999999999999985
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=5.2e-29 Score=226.16 Aligned_cols=285 Identities=21% Similarity=0.281 Sum_probs=226.2
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCCh-hhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
..+.+++++..+..+|. .++++++|++++|.+..+ +..+.++++|++|++++|.+.... ....|..+++|++|++
T Consensus 11 ~~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i--~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 11 IGYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKL 86 (455)
T ss_dssp ETTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE--CTTTTTTCTTCCEEEC
T ss_pred EccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceE--CcccccccccCCEEeC
Confidence 34678889999999987 679999999999999987 556999999999999999887532 2345778999999999
Q ss_pred cCCcCcCC-CC-CCCCCcccEEEccCCCCcCcc-cc--ccccCCCcEEEccCCCCCCc-c-c-ccCCCCccEEEcCCccc
Q 020161 104 RDNKLMKI-PD-VSIFKKLSVFDVSFNEITSSH-GL--SNVTDTLKELYVSKNEVPKM-E-E-IEHFHDLQILEFGSNRL 175 (330)
Q Consensus 104 ~~~~l~~~-~~-~~~~~~L~~L~l~~~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~-~-~-~~~~~~L~~L~l~~~~~ 175 (330)
++|.++.+ |. +..+++|++|++++|.+.+.. .. ...+++|+.|++++|.+... . . +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99999876 33 888999999999999998632 21 44478999999999998874 2 2 78899999999999987
Q ss_pred ccc--cccc----------------------------------CCCCCcEEECcCCCcccc---cc--------------
Q 020161 176 RVM--ENLQ----------------------------------NLTNLQELWLGRNRIKVV---NL-------------- 202 (330)
Q Consensus 176 ~~~--~~l~----------------------------------~~~~L~~L~l~~~~i~~~---~~-------------- 202 (330)
+.. ..+. .+++|++|++++|.+.+. .+
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 522 2222 235678888888765432 00
Q ss_pred -----------------------C--CCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCC
Q 020161 203 -----------------------C--GLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLH 253 (330)
Q Consensus 203 -----------------------~--~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~ 253 (330)
. ..++++.+++++|.+++. ..+..+++|+.|++++|.+++++ .+..+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 0 125688888888877765 34678899999999999998863 678889999
Q ss_pred EEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161 254 VLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL 316 (330)
Q Consensus 254 ~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 316 (330)
+|++++|++++. ..+..+++|++|++++|+++.+. +..+..+++|+.|++++|.+++.+.
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG---DQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccC---hhhccccccccEEECCCCccccCCH
Confidence 999999999877 56788999999999999998653 4557888999999999999887653
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=5.5e-28 Score=227.16 Aligned_cols=293 Identities=21% Similarity=0.237 Sum_probs=192.7
Q ss_pred ccccCCCcEEeccCcccccC--CCCCCCCCcCEEecCCCCCCChh-hhhhcCCCCC--EEeCCCCcCCccccccc-----
Q 020161 20 VEIDLSNTVLDLTSFQLHDL--DSVEFPTNLTELDLTANRLTSLD-SRISHLSNLK--KLSLRQNLIDDAAIEPI----- 89 (330)
Q Consensus 20 ~~~~~~l~~l~l~~~~l~~~--~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~--~L~l~~~~~~~~~~~~~----- 89 (330)
+...+++++|+++++.+.++ +....+++|++|++++|.+..++ ..+..+++|+ .|++++|.+.+..+...
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L 204 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccc
Confidence 34456677777777777665 33334677888888888777664 3477777777 77777776655432211
Q ss_pred -------------------------------------------------------------------hhhcccCCCcEEE
Q 020161 90 -------------------------------------------------------------------SRWDALAGLEELI 102 (330)
Q Consensus 90 -------------------------------------------------------------------~~~~~~~~L~~L~ 102 (330)
..|..+++|++|+
T Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 1144456677777
Q ss_pred ccCCcCcCCCC-CCCCCcccEEEccCCCCcCccc-cccccCCCcEEEccCCCCCC---cccccCCCCccEEEcCCccccc
Q 020161 103 LRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEFGSNRLRV 177 (330)
Q Consensus 103 l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~ 177 (330)
+++|.++.+|. +..+++|++|++++|.+....+ ....+++|+.|++++|.+.. ...+..+++|++|++++|.++.
T Consensus 285 l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp CTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred ccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 77777666664 6666777777777777665543 23336667777777776543 1236667777777777776643
Q ss_pred ----cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc---ccccccccceEEccCCCCCCC--cC
Q 020161 178 ----MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKM--EG 245 (330)
Q Consensus 178 ----~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~--~~ 245 (330)
+..+..+++|++|++++|.+... .+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+++. ..
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 23466777777777777776554 4566677777777777776541 256677778888877777664 34
Q ss_pred CCCCCCCCEEEcCCCCCCCc-----cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 246 LSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 246 ~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
+..+++|++|++++|++++. ..+..+++|++|++++|.++.++ +..+..+++|+.|++++|++.+..
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID---QHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCCGGG
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC---hhhhccccCCCEEECCCCccCcCC
Confidence 66777788888888877652 34667777777777777777543 344667777777777777766543
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.9e-28 Score=212.24 Aligned_cols=279 Identities=21% Similarity=0.262 Sum_probs=222.0
Q ss_pred CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 102 (330)
.++++++++++.+..+|. ..++++++|++++|.+..+++ .+.++++|++|++++|.+.... ...+..+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH---EKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---GGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC---HhHhhCcCCCCEEE
Confidence 468999999999998886 456899999999999998865 6899999999999999998863 34567799999999
Q ss_pred ccCCcCcCCCCCCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCC----cccccCCCCccEEEcCCccccc
Q 020161 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGSNRLRV 177 (330)
Q Consensus 103 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~ 177 (330)
+++|.++.+|.. ..++|++|++++|.+..++.. ...+++|+.|++++|.+.. ...+..+ +|+.|++++|.++.
T Consensus 109 L~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 109 ISKNHLVEIPPN-LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CCSSCCCSCCSS-CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCCCcCCccCcc-ccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 999999988862 228999999999999887764 3448899999999998853 2445555 89999999998864
Q ss_pred cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc-CCCCCCC
Q 020161 178 MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-GLSTLVN 251 (330)
Q Consensus 178 ~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~ 251 (330)
++.- -.++|++|++++|.+... .+..+++|+.|++++|.+++.+ .+..+++|+.|++++|.++.++ .+..+++
T Consensus 187 l~~~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL 265 (332)
T ss_dssp CCSS-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTT
T ss_pred cCcc-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCcc
Confidence 4321 126899999999988776 4778889999999999988874 4778899999999999999875 4778899
Q ss_pred CCEEEcCCCCCCCc--ccccc------CCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161 252 LHVLDVSSNKLTLV--DDIQN------LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (330)
Q Consensus 252 L~~L~l~~n~~~~~--~~~~~------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 310 (330)
|++|++++|+++.+ ..+.. .+.|+.+++.+|++... +..+..+..+++|+.+++++|+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~-~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW-EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG-GSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCccccc-ccCcccccccchhhhhhccccc
Confidence 99999999999876 22322 46788999999998733 2224667888999999998875
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=220.81 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=93.5
Q ss_pred CCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCCh-hhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
+++++|+++++.+.++++ ...+++|++|++++|.++.+ |..|.++++|++|++++|.+..... . .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC----H--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC----C--CCCCCSE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc----c--ccCCccE
Confidence 789999999999988763 55678999999999999977 4568999999999999998885321 1 6899999
Q ss_pred EEccCCcCcCC--CC-CCCCCcccEEEccCCCCcCccccccccCCC--cEEEccCCCC
Q 020161 101 LILRDNKLMKI--PD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL--KELYVSKNEV 153 (330)
Q Consensus 101 L~l~~~~l~~~--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 153 (330)
|++++|.++.+ |. ++.+++|++|++++|.+.... ...+++| +.|++++|.+
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG--GGGGTTSCEEEEEEEECTT
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccchhh--ccccccceeeEEEeecccc
Confidence 99999998864 43 788999999999999876521 1223444 5555555444
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.2e-27 Score=222.22 Aligned_cols=151 Identities=24% Similarity=0.302 Sum_probs=110.6
Q ss_pred CCCCccEEEcCCccccc-----cccccCCCCCcEEECcCCCcccc-----ccCCCCcccEEECCCCcccccc-ccccccc
Q 020161 161 HFHDLQILEFGSNRLRV-----MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMK-GFEECIA 229 (330)
Q Consensus 161 ~~~~L~~L~l~~~~~~~-----~~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~ 229 (330)
.+++|++|++++|.+.. ...+..+++|++|++++|.+... .+..+++|++|++++|.++..+ .+..++.
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 46677788888877652 12356778888888888887654 3677788888888888877664 3455667
Q ss_pred cceEEccCCCCCCCcC-------------------CCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHH
Q 020161 230 LEELYLSHNGISKMEG-------------------LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI 290 (330)
Q Consensus 230 L~~l~l~~~~~~~~~~-------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 290 (330)
|+.|++++|.++.++. ...+++|++|++++|+++.++....+++|++|++++|++++++
T Consensus 412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~-- 489 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP-- 489 (549)
T ss_dssp CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCC--
T ss_pred ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcC--
Confidence 7777777776654421 1357788888888888887766677888999999999888654
Q ss_pred HHHHhccccccchhhccCCCcccc
Q 020161 291 VEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 291 ~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
+..+..+++|+.|++++|++.+.
T Consensus 490 -~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 490 -DGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp -TTGGGGCTTCCEEECCSSCBCCC
T ss_pred -HHHHhcCcccCEEEecCCCccCC
Confidence 45567889999999999996553
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.1e-27 Score=221.13 Aligned_cols=103 Identities=23% Similarity=0.344 Sum_probs=59.7
Q ss_pred CCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChh-hhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
+++++|+++++.+.++++ ...+++|++|++++|.+++++ ..|.++++|++|++++|.+..... . .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC----C--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS----C--CCTTCSE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc----c--ccccCCE
Confidence 556666666666666542 334566666666666666553 345666666666666666654211 1 4566666
Q ss_pred EEccCCcCcCCC---CCCCCCcccEEEccCCCCcC
Q 020161 101 LILRDNKLMKIP---DVSIFKKLSVFDVSFNEITS 132 (330)
Q Consensus 101 L~l~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~ 132 (330)
|++++|.++.++ .+..+++|++|++++|.+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 666666666543 25566666666666666543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.3e-27 Score=230.02 Aligned_cols=296 Identities=19% Similarity=0.224 Sum_probs=179.2
Q ss_pred CcccccccCCCcEEeccCccccc------------------CCC-CC--CCCCcCEEecCCCCCC-ChhhhhhcCCCCCE
Q 020161 16 PDQAVEIDLSNTVLDLTSFQLHD------------------LDS-VE--FPTNLTELDLTANRLT-SLDSRISHLSNLKK 73 (330)
Q Consensus 16 ~~~~~~~~~~l~~l~l~~~~l~~------------------~~~-~~--~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~ 73 (330)
++..+...+++++|+++++.+.+ +|. +. .+++|++|++++|.+. .+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 44556667888888888888888 664 33 4688888888888766 67777888888888
Q ss_pred EeCCCCc-CCc-cccccchh----hcccCCCcEEEccCCcCcCCCC---CCCCCcccEEEccCCCCcCccccccccCCCc
Q 020161 74 LSLRQNL-IDD-AAIEPISR----WDALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK 144 (330)
Q Consensus 74 L~l~~~~-~~~-~~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 144 (330)
|++++|. +++ ..|..+.. +..+++|++|++++|.++.+|. +..+++|++|++++|.+..++ ....+++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence 8888887 665 43332222 1234467777777776666665 566666666666666666444 333355666
Q ss_pred EEEccCCCCCCc-ccccCCCC-ccEEEcCCcccccc-ccccC-------------------------------CCCCcEE
Q 020161 145 ELYVSKNEVPKM-EEIEHFHD-LQILEFGSNRLRVM-ENLQN-------------------------------LTNLQEL 190 (330)
Q Consensus 145 ~L~l~~~~~~~~-~~~~~~~~-L~~L~l~~~~~~~~-~~l~~-------------------------------~~~L~~L 190 (330)
.|++++|.+..+ ..+..+++ |+.|++++|.++.+ ..+.. +++|+.|
T Consensus 599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp EEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred EEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 666666665543 23455555 66666666555322 11222 2245555
Q ss_pred ECcCCCcccc---ccCCCCcccEEECCCCccccccc---------cccccccceEEccCCCCCCCcC-CC--CCCCCCEE
Q 020161 191 WLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG---------FEECIALEELYLSHNGISKMEG-LS--TLVNLHVL 255 (330)
Q Consensus 191 ~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~---------~~~~~~L~~l~l~~~~~~~~~~-~~--~~~~L~~L 255 (330)
++++|.+... .+..+++|+.|++++|.++..+. +..+++|+.|++++|.++.++. +. .+++|+.|
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence 5555554433 12345566666666666654432 1123367777777776666542 33 56677777
Q ss_pred EcCCCCCCCc-cccccCCCCCeEeCCC------CCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 256 DVSSNKLTLV-DDIQNLSRLEDLWLND------NQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 256 ~l~~n~~~~~-~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
++++|+++++ ..+..+++|+.|++++ |.+.. .++..+.++++|+.|+|++|++..++
T Consensus 759 ~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~---~ip~~l~~L~~L~~L~Ls~N~L~~Ip 822 (876)
T 4ecn_A 759 DVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR---QWPTGITTCPSLIQLQIGSNDIRKVD 822 (876)
T ss_dssp ECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC---CCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred EeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccc---cChHHHhcCCCCCEEECCCCCCCccC
Confidence 7777777666 4556677777777765 44331 22344566777777777777775554
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.9e-27 Score=223.46 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=89.2
Q ss_pred ccCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC--C-cCCCCCCC
Q 020161 181 LQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK--M-EGLSTLVN 251 (330)
Q Consensus 181 l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~--~-~~~~~~~~ 251 (330)
+..+++|+.|++++|.+.+. .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++ + ..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 44445555555555544433 344556666666666665544 235566777777777777665 2 34677788
Q ss_pred CCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161 252 LHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL 316 (330)
Q Consensus 252 L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 316 (330)
|++|++++|++++. ..+..+++|++|++++|+++++. +..+..+++|+.|++++|++..++.
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD---SSHYNQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE---GGGTTTCTTCCEEECTTSCCCCEES
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC---HHHccCCCcCCEEECCCCcCcccCH
Confidence 88888888888766 45777888888888888888653 4556778888888888888876654
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.3e-28 Score=226.96 Aligned_cols=297 Identities=16% Similarity=0.177 Sum_probs=179.3
Q ss_pred CcccccccCCCcEEeccCccccc------------------CCC-CC--CCCCcCEEecCCCCCC-ChhhhhhcCCCCCE
Q 020161 16 PDQAVEIDLSNTVLDLTSFQLHD------------------LDS-VE--FPTNLTELDLTANRLT-SLDSRISHLSNLKK 73 (330)
Q Consensus 16 ~~~~~~~~~~l~~l~l~~~~l~~------------------~~~-~~--~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~ 73 (330)
++..+....++++|+++++.+.+ +|. +. .+++|++|++++|.+. .+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 34455666778888888888877 653 33 4677888888888766 56666777888888
Q ss_pred EeCCCCc-CCc-cccccchhh---cccCCCcEEEccCCcCcCCCC---CCCCCcccEEEccCCCCc-CccccccccCCCc
Q 020161 74 LSLRQNL-IDD-AAIEPISRW---DALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEIT-SSHGLSNVTDTLK 144 (330)
Q Consensus 74 L~l~~~~-~~~-~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~ 144 (330)
|++++|. +++ ..|..+..+ ..+++|++|++++|.++.+|. +..+++|++|++++|.+. .++ ....+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 8888876 665 433332221 223667777777766666664 566666666666666665 333 222244444
Q ss_pred EEEccCCCCCCc-ccccCCC--------------------------CccEEEcCCccccc--ccccc-------CCCCCc
Q 020161 145 ELYVSKNEVPKM-EEIEHFH--------------------------DLQILEFGSNRLRV--MENLQ-------NLTNLQ 188 (330)
Q Consensus 145 ~L~l~~~~~~~~-~~~~~~~--------------------------~L~~L~l~~~~~~~--~~~l~-------~~~~L~ 188 (330)
.|++++|.+..+ ..+..++ +|+.|++++|.++. +..+. .+++|+
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 454444444332 2233333 45555555554431 12233 444666
Q ss_pred EEECcCCCcccc---ccCCCCcccEEECCCCccccccc--cc-------cccccceEEccCCCCCCCcC-CC--CCCCCC
Q 020161 189 ELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FE-------ECIALEELYLSHNGISKMEG-LS--TLVNLH 253 (330)
Q Consensus 189 ~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~-------~~~~L~~l~l~~~~~~~~~~-~~--~~~~L~ 253 (330)
.|++++|.+... .+..+++|+.|++++|.++..+. +. .+++|+.|++++|.++.++. +. .+++|+
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcC
Confidence 666666665544 13345667777777776665432 11 22377777777777776642 33 677788
Q ss_pred EEEcCCCCCCCc-cccccCCCCCeEeCCC------CCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161 254 VLDVSSNKLTLV-DDIQNLSRLEDLWLND------NQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL 316 (330)
Q Consensus 254 ~L~l~~n~~~~~-~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 316 (330)
+|++++|+++++ ..+..+++|+.|++++ |++.. .++..+..+++|+.|++++|.++.++.
T Consensus 517 ~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR---EWPEGITLCPSLTQLQIGSNDIRKVNE 583 (636)
T ss_dssp EEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC---CCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred EEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccc---cChHHHhcCCCCCEEECCCCcCCccCH
Confidence 888888877776 4566777888888743 44442 223445677888888888888766543
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=8.7e-28 Score=226.46 Aligned_cols=287 Identities=15% Similarity=0.189 Sum_probs=200.3
Q ss_pred ccCCCcEEeccCcccccC-C-CCCCCCCcCEEecCCCC-CCC--hhhhhhcC------CCCCEEeCCCCcCCccccccch
Q 020161 22 IDLSNTVLDLTSFQLHDL-D-SVEFPTNLTELDLTANR-LTS--LDSRISHL------SNLKKLSLRQNLIDDAAIEPIS 90 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~-~-~~~~~~~L~~L~l~~~~-i~~--l~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~ 90 (330)
...++++|+++++.+.+. | .+..+++|++|++++|. +++ +|..+..+ ++|++|++++|.++. .|. ..
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~-~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPV-ET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCC-HH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCc-hh
Confidence 567777888877776553 3 23445677777777776 663 66555554 666666666666653 211 01
Q ss_pred hhcccCCCcEEEccCCcCc-----------------------CCCC-CCCCCc-ccEEEccCCCCcCccccccc--cCCC
Q 020161 91 RWDALAGLEELILRDNKLM-----------------------KIPD-VSIFKK-LSVFDVSFNEITSSHGLSNV--TDTL 143 (330)
Q Consensus 91 ~~~~~~~L~~L~l~~~~l~-----------------------~~~~-~~~~~~-L~~L~l~~~~~~~~~~~~~~--~~~L 143 (330)
.+..+++|++|++++|.++ .+|. +..+++ |++|++++|.+..++..... +++|
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 3444555555555555554 3433 444555 66666666666655543333 2367
Q ss_pred cEEEccCCCCCCc--cccc-------CCCCccEEEcCCccccccc-c-ccCCCCCcEEECcCCCccccccCCC-------
Q 020161 144 KELYVSKNEVPKM--EEIE-------HFHDLQILEFGSNRLRVME-N-LQNLTNLQELWLGRNRIKVVNLCGL------- 205 (330)
Q Consensus 144 ~~L~l~~~~~~~~--~~~~-------~~~~L~~L~l~~~~~~~~~-~-l~~~~~L~~L~l~~~~i~~~~~~~~------- 205 (330)
+.|++++|.+.+. ..+. .+++|++|++++|.++.++ . +..+++|++|++++|.+...+....
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 7777777776652 3344 6679999999999987442 2 4568999999999999886632222
Q ss_pred ---CcccEEECCCCccccccc-cc--cccccceEEccCCCCCCCc-CCCCCCCCCEEEcCC------CCCCCc--ccccc
Q 020161 206 ---KCIKKISLQSNRLTSMKG-FE--ECIALEELYLSHNGISKME-GLSTLVNLHVLDVSS------NKLTLV--DDIQN 270 (330)
Q Consensus 206 ---~~L~~L~l~~~~l~~~~~-~~--~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~------n~~~~~--~~~~~ 270 (330)
++|+.|++++|.++..+. +. .+++|+.|++++|.+++++ .+..+++|++|++++ |++.+. ..+..
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 289999999999997753 43 8899999999999999974 577899999999954 555544 57889
Q ss_pred CCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161 271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL 316 (330)
Q Consensus 271 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 316 (330)
+++|++|++++|+++.++.. + .++|+.|++++|++.+.+.
T Consensus 565 l~~L~~L~Ls~N~l~~ip~~----~--~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 565 CPSLTQLQIGSNDIRKVNEK----I--TPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CSSCCEEECCSSCCCBCCSC----C--CTTCCEEECCSCTTCEEEC
T ss_pred CCCCCEEECCCCcCCccCHh----H--hCcCCEEECcCCCCccccH
Confidence 99999999999999887632 2 2899999999999887664
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=5.4e-28 Score=232.74 Aligned_cols=217 Identities=22% Similarity=0.253 Sum_probs=132.8
Q ss_pred ccCCCcEEEccCCcCcC-CCC-CCCCCcccEEEccCCCCcCcc-ccccccCCCcEEEccCCCCCC--cccccCCCCccEE
Q 020161 94 ALAGLEELILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQIL 168 (330)
Q Consensus 94 ~~~~L~~L~l~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L 168 (330)
.+++|++|++++|.+++ +|. +..+++|++|++++|.+.+.. .....+++|+.|++++|.+.+ +..+..+++|++|
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 34444455555444442 222 444455555555555554322 222335566666666666554 2345666666666
Q ss_pred EcCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc-c--------------------
Q 020161 169 EFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-K-------------------- 222 (330)
Q Consensus 169 ~l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~-~-------------------- 222 (330)
++++|.+. .+..+..+++|+.|++++|.+.+. .+..+++|+.|++++|.+++. |
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 66666664 334566666777777777766543 456667777777777655421 1
Q ss_pred ---------------------------------------------------ccccccccceEEccCCCCCCC--cCCCCC
Q 020161 223 ---------------------------------------------------GFEECIALEELYLSHNGISKM--EGLSTL 249 (330)
Q Consensus 223 ---------------------------------------------------~~~~~~~L~~l~l~~~~~~~~--~~~~~~ 249 (330)
.+..++.|+.|++++|.+++. +.+..+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 112245677777777777753 346777
Q ss_pred CCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161 250 VNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 250 ~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
++|+.|++++|++++. ..++.+++|+.||+++|+++ +.++..+..+++|+.|++++|++.+
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~---g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD---GRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE---ECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc---CcCChHHhCCCCCCEEECcCCcccc
Confidence 7888888888888755 56778888888888888877 2334556777888888888888654
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.6e-27 Score=220.96 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=119.4
Q ss_pred cCCCcEEEccCCCCCCc----ccccCCCCccEEEcCCccccc-cccccCCCCCcEEECcCCCcccc----ccCCCCcccE
Q 020161 140 TDTLKELYVSKNEVPKM----EEIEHFHDLQILEFGSNRLRV-MENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKK 210 (330)
Q Consensus 140 ~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~ 210 (330)
+++|+.|++++|.+... ..+..+++|++|++++|.+.. +..+..+++|++|++++|.+... .+..+++|++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 34455555555544432 224455566666666665532 23356667777777777765543 3566677888
Q ss_pred EECCCCccccc--cccccccccceEEccCCCCCC--C-cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCC
Q 020161 211 ISLQSNRLTSM--KGFEECIALEELYLSHNGISK--M-EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ 283 (330)
Q Consensus 211 L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~--~-~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~ 283 (330)
|++++|.+++. ..+..+++|+.|++++|.+++ + ..+..+++|++|++++|++++. ..+..+++|++|++++|+
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 88888777655 346678888888888888762 3 4577888999999999988877 467788999999999999
Q ss_pred CCchHHHHHHHhccccccchhhccCCCcccc
Q 020161 284 IESLESIVEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 284 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
+++++ +..+.++++|+.|++++|++.+.
T Consensus 506 l~~~~---~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 506 LKSVP---DGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CSCCC---TTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCC---HHHhhcccCCcEEEecCCcccCC
Confidence 88664 45577889999999999997654
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3.9e-26 Score=206.70 Aligned_cols=278 Identities=24% Similarity=0.276 Sum_probs=179.3
Q ss_pred ccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161 20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (330)
Q Consensus 20 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 99 (330)
+...+++++|+++++.+.+++ ...+++|++|++++|.++.++ +.++++|++|++++|.+.+. + +..+++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l---~---~~~l~~L~ 130 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL---D---VSQNPLLT 130 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC---C---CTTCTTCC
T ss_pred hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee---c---CCCCCcCC
Confidence 556788999999999988876 667788999999999888874 77888999999998888774 1 45678888
Q ss_pred EEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccc
Q 020161 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME 179 (330)
Q Consensus 100 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 179 (330)
+|++++|.++.++ +..+++|++|++++|...+... ...+++|+.|++++|.+.+++ +..+++|+.|++++|.++..
T Consensus 131 ~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~- 206 (457)
T 3bz5_A 131 YLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL- 206 (457)
T ss_dssp EEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC-
T ss_pred EEECCCCccceec-cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee-
Confidence 8888888877764 5666666666666663222111 222455555555555555533 44455555555555544433
Q ss_pred cccCCCCCcEEECcCCCccccccCCCCcccEEECCCCcccccc-------------------------------cccccc
Q 020161 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK-------------------------------GFEECI 228 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~-------------------------------~~~~~~ 228 (330)
.+..+++|+.|++++|.+.+.++..+++|+.|++++|.+++.+ .+..++
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~ 286 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence 2444444555555554444444444444444444444443321 123457
Q ss_pred ccceEEccCCCCCC-Cc---------CCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHH----
Q 020161 229 ALEELYLSHNGISK-ME---------GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAV---- 294 (330)
Q Consensus 229 ~L~~l~l~~~~~~~-~~---------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---- 294 (330)
.|+.|++++|...+ ++ .+..+++|+.|++++|++++++ +..+++|+.|++++|++++++... ..
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-l~~l~~L~~L~l~~N~l~~l~~L~-~L~l~~ 364 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQDFSSVG-KIPALN 364 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCSEEECCSSCCCBCTTGG-GSSGGG
T ss_pred cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-cccCCcCcEEECCCCCCCCccccc-cccccC
Confidence 77888887775432 11 2667789999999999999985 889999999999999998753211 00
Q ss_pred -----hccccccchhhccCCCcc
Q 020161 295 -----AGSRETLTTIYLENNPCK 312 (330)
Q Consensus 295 -----~~~~~~L~~l~l~~n~~~ 312 (330)
..++..|..+++++|.++
T Consensus 365 n~l~g~~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 365 NNFEAEGQTITMPKETLTNNSLT 387 (457)
T ss_dssp TSEEEEEEEEECCCBCCBTTBEE
T ss_pred CcEEecceeeecCccccccCcEE
Confidence 012345566666666654
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3e-27 Score=227.44 Aligned_cols=290 Identities=15% Similarity=0.165 Sum_probs=196.1
Q ss_pred ccCCCcEEeccCcccccC-C-CCCCCCCcCEEecCCCC-CCC--hhhhhhcCC-------CCCEEeCCCCcCCccccccc
Q 020161 22 IDLSNTVLDLTSFQLHDL-D-SVEFPTNLTELDLTANR-LTS--LDSRISHLS-------NLKKLSLRQNLIDDAAIEPI 89 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~-~-~~~~~~~L~~L~l~~~~-i~~--l~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~ 89 (330)
..+++++|++++|.+.+. | .+..+++|++|++++|. ++. +|..+..++ +|++|++++|.+.. .|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~-~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPA-S 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCC-H
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCC-h
Confidence 566777777777765543 3 23345677777777776 664 555444443 67777777776663 211 0
Q ss_pred hhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCC-CcEEEccCCCCCCccc-cc-------
Q 020161 90 SRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT-LKELYVSKNEVPKMEE-IE------- 160 (330)
Q Consensus 90 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~-~~------- 160 (330)
..+..+++|++|++++|.++.+|.+..+++|++|++++|.+..++.....+++ |+.|++++|.+..++. +.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 13455666666666666666666556666666666666666554443344444 5555555554443211 11
Q ss_pred ------------------------CCCCccEEEcCCcccccc-cc-ccCCCCCcEEECcCCCcccccc---C-------C
Q 020161 161 ------------------------HFHDLQILEFGSNRLRVM-EN-LQNLTNLQELWLGRNRIKVVNL---C-------G 204 (330)
Q Consensus 161 ------------------------~~~~L~~L~l~~~~~~~~-~~-l~~~~~L~~L~l~~~~i~~~~~---~-------~ 204 (330)
.+++|+.|++++|.++.+ .. +..+++|+.|++++|.+...+. . .
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 223677777777776533 22 3478899999999999886622 2 2
Q ss_pred CCcccEEECCCCccccccc-cc--cccccceEEccCCCCCCCc-CCCCCCCCCEEEcCC------CCCCCc--cccccCC
Q 020161 205 LKCIKKISLQSNRLTSMKG-FE--ECIALEELYLSHNGISKME-GLSTLVNLHVLDVSS------NKLTLV--DDIQNLS 272 (330)
Q Consensus 205 ~~~L~~L~l~~~~l~~~~~-~~--~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~------n~~~~~--~~~~~~~ 272 (330)
+++|+.|++++|.++..+. +. .+++|+.|++++|.+++++ .+..+++|+.|++++ |++.+. ..+..++
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 2389999999999997753 43 7899999999999999975 577899999999987 555544 5788999
Q ss_pred CCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccccccc
Q 020161 273 RLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCY 319 (330)
Q Consensus 273 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 319 (330)
+|+.|++++|+++.++.. + .++|+.|+|++|++..+..-.+
T Consensus 807 ~L~~L~Ls~N~L~~Ip~~----l--~~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 807 SLIQLQIGSNDIRKVDEK----L--TPQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp SCCEEECCSSCCCBCCSC----C--CSSSCEEECCSCTTCEEECGGG
T ss_pred CCCEEECCCCCCCccCHh----h--cCCCCEEECCCCCCCccChHHc
Confidence 999999999999877632 2 2799999999999877664433
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1e-26 Score=202.30 Aligned_cols=259 Identities=23% Similarity=0.343 Sum_probs=219.1
Q ss_pred CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCC-CC-CCCCCcccEE
Q 020161 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI-PD-VSIFKKLSVF 123 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~-~~~~~~L~~L 123 (330)
.+++.++++++.++.+|..+ .++|++|++++|.+.+.. ...+..+++|++|++++|.++.+ |. +..+++|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeC---hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 37999999999999998755 379999999999998863 33567899999999999999987 43 8889999999
Q ss_pred EccCCCCcCccccccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcccc----ccccccCCCCCcEEECcCCCc
Q 020161 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRI 197 (330)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~----~~~~l~~~~~L~~L~l~~~~i 197 (330)
++++|.+..++... .++|+.|++++|.+... ..+..+++|+.|++++|.+. .+..+..+++|+.|++++|.+
T Consensus 106 ~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 106 YLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp ECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCccChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 99999998766533 37899999999998885 34889999999999999884 235678899999999999999
Q ss_pred cccccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc-cccccCC
Q 020161 198 KVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLS 272 (330)
Q Consensus 198 ~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~~~~~~~ 272 (330)
...+....++|+.|++++|.+++. ..+..+++|+.|++++|.+++++ .+..+++|++|++++|+++.+ ..+..++
T Consensus 184 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 263 (330)
T 1xku_A 184 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263 (330)
T ss_dssp CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCC
Confidence 887555558999999999999877 35788999999999999999864 578899999999999999988 5688899
Q ss_pred CCCeEeCCCCCCCchHHHHHHHhc------cccccchhhccCCCcccc
Q 020161 273 RLEDLWLNDNQIESLESIVEAVAG------SRETLTTIYLENNPCKIF 314 (330)
Q Consensus 273 ~L~~L~l~~n~l~~~~~~~~~~~~------~~~~L~~l~l~~n~~~~~ 314 (330)
+|++|++++|+++.++. ..+. ..+.++.+++++|++...
T Consensus 264 ~L~~L~l~~N~i~~~~~---~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGS---NDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp SCCEEECCSSCCCCCCT---TSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CcCEEECCCCcCCccCh---hhcCCcccccccccccceEeecCccccc
Confidence 99999999999998753 2222 247889999999997653
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5.3e-28 Score=232.79 Aligned_cols=286 Identities=25% Similarity=0.257 Sum_probs=211.3
Q ss_pred cccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCC-Chhhhhhc-CCCCCEEeCCCCcCCccccccchhhcccCCC
Q 020161 21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-SLDSRISH-LSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (330)
Q Consensus 21 ~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 98 (330)
...+++++|+++++.+.+..+...+++|++|++++|.+. .+|..+.. +++|++|++++|.+.+..+ ..+..+++|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p---~~~~~l~~L 320 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP---PFFGSCSLL 320 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC---GGGGGCTTC
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc---hHHhcCCCc
Confidence 334455555555555544332234566666666666666 55555544 4777777777777766533 345567788
Q ss_pred cEEEccCCcCc-CCCC--CCCCCcccEEEccCCCCcC-ccccccccC-CCcEEEccCCCCCC--cccccC--CCCccEEE
Q 020161 99 EELILRDNKLM-KIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTD-TLKELYVSKNEVPK--MEEIEH--FHDLQILE 169 (330)
Q Consensus 99 ~~L~l~~~~l~-~~~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~-~L~~L~l~~~~~~~--~~~~~~--~~~L~~L~ 169 (330)
++|++++|.+. .+|. +..+++|++|++++|.+.+ ++.....++ +|+.|++++|.+.+ +..+.. +++|++|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 88888888776 4553 6677888888888887763 333333344 78888888887765 233333 67899999
Q ss_pred cCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC
Q 020161 170 FGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK 242 (330)
Q Consensus 170 l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~ 242 (330)
+++|.++ .+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+++. ..+..++.|+.|++++|.+++
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 9999885 456788899999999999987754 677889999999999998865 357788999999999999986
Q ss_pred C--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161 243 M--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312 (330)
Q Consensus 243 ~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 312 (330)
. ..+..+++|++|++++|++++. .+++.+++|++|++++|+++. .++..+..+++|+.|++++|++.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG---NIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE---ECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC---cCCHHHcCCCCCCEEECCCCccC
Confidence 4 4578899999999999999865 678899999999999999883 23455788999999999999976
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=216.94 Aligned_cols=171 Identities=24% Similarity=0.306 Sum_probs=139.0
Q ss_pred CCcEEEccCCCCCCcccccCCCCccEEEcCCccccc--cccccCCCCCcEEECcCCCcccc-----ccCCCCcccEEECC
Q 020161 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV--MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQ 214 (330)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~ 214 (330)
+++.|++++|.+.....+..+++|++|++++|.++. +..+..+++|++|++++|.+.+. .+..+++|+.|+++
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 466666666666554434788999999999999864 56788999999999999998863 37889999999999
Q ss_pred CCcccc-cc--ccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHH
Q 020161 215 SNRLTS-MK--GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESI 290 (330)
Q Consensus 215 ~~~l~~-~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~ 290 (330)
+|.+++ .+ .+..++.|+.|++++|.+++...-.-.++|+.|++++|+++.+ ..+..+++|++|++++|+++.++.
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~- 461 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD- 461 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCT-
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCH-
Confidence 999987 54 4677899999999999987632111127999999999999988 456799999999999999998763
Q ss_pred HHHHhccccccchhhccCCCccccc
Q 020161 291 VEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 291 ~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
..+..+++|+.|++++|++.+..
T Consensus 462 --~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 462 --GIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp --TTTTTCTTCCEEECCSSCBCCCH
T ss_pred --HHhccCCcccEEECcCCCCcccC
Confidence 35778999999999999987644
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=9.1e-27 Score=216.86 Aligned_cols=288 Identities=22% Similarity=0.272 Sum_probs=208.3
Q ss_pred ccccccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhccc
Q 020161 18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95 (330)
Q Consensus 18 ~~~~~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 95 (330)
..+...+++++|+++++.+.++++ ...+++|++|++++|.++.+|.. .+++|++|++++|.+.... .+..+..+
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~--~p~~~~~l 145 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLP--VCKEFGNL 145 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCC--CCGGGGGC
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccC--chHhhccc
Confidence 455667889999999999988754 34568899999999999988876 7899999999999887742 12356778
Q ss_pred CCCcEEEccCCcCcCCCCCCCCCcc--cEEEccCCCC--cCcccccc---------------------------cc----
Q 020161 96 AGLEELILRDNKLMKIPDVSIFKKL--SVFDVSFNEI--TSSHGLSN---------------------------VT---- 140 (330)
Q Consensus 96 ~~L~~L~l~~~~l~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~---------------------------~~---- 140 (330)
++|++|++++|.+... .+..+++| ++|++++|.+ .+..+... .+
T Consensus 146 ~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 146 TKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp TTCCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred CcccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence 8899999988887752 24444555 7777777765 22110000 00
Q ss_pred ---------------------------------------------------CCCcEEEccCCCCCC--------------
Q 020161 141 ---------------------------------------------------DTLKELYVSKNEVPK-------------- 155 (330)
Q Consensus 141 ---------------------------------------------------~~L~~L~l~~~~~~~-------------- 155 (330)
.+|++|++++|.+.+
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L 304 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccc
Confidence 144455555444331
Q ss_pred -----------------------------------------cccccCCCCccEEEcCCccccc--cccccCCCCCcEEEC
Q 020161 156 -----------------------------------------MEEIEHFHDLQILEFGSNRLRV--MENLQNLTNLQELWL 192 (330)
Q Consensus 156 -----------------------------------------~~~~~~~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l 192 (330)
......+++|++|++++|.++. +..+..+++|++|++
T Consensus 305 ~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 384 (562)
T 3a79_B 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384 (562)
T ss_dssp CEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred hheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence 1111566788888888888753 456778888888888
Q ss_pred cCCCcccc-----ccCCCCcccEEECCCCcccc-cc--ccccccccceEEccCCCCCCCcCCCCC-CCCCEEEcCCCCCC
Q 020161 193 GRNRIKVV-----NLCGLKCIKKISLQSNRLTS-MK--GFEECIALEELYLSHNGISKMEGLSTL-VNLHVLDVSSNKLT 263 (330)
Q Consensus 193 ~~~~i~~~-----~~~~~~~L~~L~l~~~~l~~-~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~n~~~ 263 (330)
++|.+... .+..+++|+.|++++|.+++ .+ .+..++.|+.|++++|.+++.. ...+ ++|++|++++|+++
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIM 463 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCC
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCc
Confidence 88887754 36778888888888888876 43 3667788888888888886532 1222 68999999999999
Q ss_pred Cc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161 264 LV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 264 ~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
.+ ..+..+++|++|++++|+++.++. ..+..+++|+.|++++|++.+.
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLKSVPD---GVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCCCCCT---TSTTTCTTCCCEECCSCCBCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCCCCCH---HHHhcCCCCCEEEecCCCcCCC
Confidence 88 446688999999999999998763 3477889999999999997654
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.5e-26 Score=217.69 Aligned_cols=291 Identities=26% Similarity=0.274 Sum_probs=201.0
Q ss_pred cccccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCC------Chhh----hhhcCCCCCEEeCCCCcCCcccc
Q 020161 19 AVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT------SLDS----RISHLSNLKKLSLRQNLIDDAAI 86 (330)
Q Consensus 19 ~~~~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~------~l~~----~~~~l~~L~~L~l~~~~~~~~~~ 86 (330)
.+...+++++|+++++.+.++++ ...+++|++|++++|... .+|. .+..+++|++|++++|.+.+..+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 34456778888888887766532 223445555555543222 1111 23444455555555444444321
Q ss_pred ccchhhccc----------------------------CCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCc-c-
Q 020161 87 EPISRWDAL----------------------------AGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSS-H- 134 (330)
Q Consensus 87 ~~~~~~~~~----------------------------~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~-~- 134 (330)
..|..+ ++|+.|++++|.++.+++ +..+++|++|++++|.+.+. +
T Consensus 347 ---~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 347 ---NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp ---TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred ---hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 122233 356666666666665432 56677777777777776542 2
Q ss_pred ccccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcccc----ccccccCCCCCcEEECcCCCcccc---ccCCC
Q 020161 135 GLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRIKVV---NLCGL 205 (330)
Q Consensus 135 ~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~ 205 (330)
.....+++|+.|++++|.+... ..+..+++|+.|++++|.+. .+..+..+++|+.|++++|.+... .+..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 1233367777888877776553 45667788888888887764 335577889999999999988776 47788
Q ss_pred CcccEEECCCCcccccc----------ccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc--cccccC
Q 020161 206 KCIKKISLQSNRLTSMK----------GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNL 271 (330)
Q Consensus 206 ~~L~~L~l~~~~l~~~~----------~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~~~~~ 271 (330)
++|+.|++++|.++..+ .+..+++|+.|++++|.++.++ .+..+++|++|++++|+++.+ ..+..+
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 99999999999887652 2678899999999999999886 478999999999999999988 446789
Q ss_pred CCCCeEeCCCCCCCchHHHHHHHhc-cccccchhhccCCCccccc
Q 020161 272 SRLEDLWLNDNQIESLESIVEAVAG-SRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 272 ~~L~~L~l~~n~l~~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~ 315 (330)
++|+.|++++|+++.++. ..+. .+++|+.+++++|++.+..
T Consensus 584 ~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEK---KVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTCCEEECTTSCCCBCCH---HHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCEEECCCCcCCccCh---hHhcccccccCEEEccCCCcccCC
Confidence 999999999999997753 3344 6789999999999976654
No 34
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.5e-26 Score=214.20 Aligned_cols=258 Identities=28% Similarity=0.269 Sum_probs=171.0
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (330)
++++|+++++.+..+|. ..+++|++|++++|.++.+|. .+++|++|++++|.++.... .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV-------LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-------CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-------CCCCCCEEECc
Confidence 46777887777777765 334778888888887777766 56778888888877765311 45777777777
Q ss_pred CCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCC
Q 020161 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184 (330)
Q Consensus 105 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 184 (330)
+|.++.+|. .+++|++|++++|.+..++.. +++|+.|++++|.+..++. .+++|+.|++++|.++.++ ..+
T Consensus 110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~--~~~ 180 (622)
T 3g06_A 110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP--MLP 180 (622)
T ss_dssp SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--CCC
T ss_pred CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc--ccC
Confidence 777777765 556777777777777765542 3677777777777665432 3456777777777765444 345
Q ss_pred CCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCC
Q 020161 185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264 (330)
Q Consensus 185 ~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 264 (330)
++|+.|++++|.+...+. ..++|+.|++++|.++..+. .+++|+.|++++|.+++++ ..+++|+.|++++|+++.
T Consensus 181 ~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred CCCcEEECCCCCCCCCCC-ccchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCc
Confidence 667777777777665421 23567777777776666543 2466777777777776665 445667777777777766
Q ss_pred ccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 265 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
++. .+++|+.|++++|+++.++ ..+.++++|+.|++++|++.+
T Consensus 256 lp~--~~~~L~~L~Ls~N~L~~lp----~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 256 LPM--LPSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCC--CCTTCCEEECCSSCCCSCC----GGGGGSCTTCEEECCSCCCCH
T ss_pred CCc--ccccCcEEeCCCCCCCcCC----HHHhhccccCEEEecCCCCCC
Confidence 644 5566777777777766554 224566777777777776544
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=4e-27 Score=221.24 Aligned_cols=207 Identities=23% Similarity=0.224 Sum_probs=162.5
Q ss_pred CCCCCcccEEEccCCCCcCcc---ccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc---ccccCCCC
Q 020161 114 VSIFKKLSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM---ENLQNLTN 186 (330)
Q Consensus 114 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~l~~~~~ 186 (330)
+..+++|++|++++|.+.... .....+++|+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 345556666666666655442 2233367788888888876663 4577889999999999988533 46788999
Q ss_pred CcEEECcCCCcccc---ccCCCCcccEEECCCCccccc---cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcC
Q 020161 187 LQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVS 258 (330)
Q Consensus 187 L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~ 258 (330)
|++|++++|.+... .+..+++|++|++++|.+++. ..+..+++|+.|++++|.++++ ..+..+++|++|+++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 99999999998775 578889999999999998862 3578899999999999999886 358899999999999
Q ss_pred CCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhcccc-ccchhhccCCCccccccccccccCC
Q 020161 259 SNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE-TLTTIYLENNPCKIFKLFCYPQTNF 324 (330)
Q Consensus 259 ~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~~~~~~ 324 (330)
+|++++. ..+..+++|+.|++++|+++.++.. +..++ +|+.+++++|++.+.....|-..|+
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~----~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI----LQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC----GGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh----HhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 9999988 6788999999999999999987632 56666 5999999999987655444333333
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=8.7e-27 Score=217.37 Aligned_cols=111 Identities=24% Similarity=0.275 Sum_probs=74.4
Q ss_pred cCCCCcccEEECCCCcccccc---ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCC--c-cccccCCC
Q 020161 202 LCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTL--V-DDIQNLSR 273 (330)
Q Consensus 202 ~~~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~--~-~~~~~~~~ 273 (330)
+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++ . ..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 444555555555555554431 345566667777777666553 345667778888888887762 2 55677888
Q ss_pred CCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 274 LEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 274 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
|++|++++|+++++. +..+..+++|+.|++++|.+.+..
T Consensus 472 L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 472 LTFLDLSQCQLEQLS---PTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp CCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCEEECCCCccccCC---hhhhhcccCCCEEeCCCCcCCCCC
Confidence 888888888888552 345677888888888888877664
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7e-27 Score=203.49 Aligned_cols=257 Identities=24% Similarity=0.319 Sum_probs=217.1
Q ss_pred CcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEE
Q 020161 47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD 124 (330)
Q Consensus 47 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~ 124 (330)
+++.++++++.+..+|..+ .++|++|++++|.+.... ...+..+++|++|++++|.++.+++ +..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccC---HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 6999999999999998765 479999999999998763 3356789999999999999997643 88899999999
Q ss_pred ccCCCCcCccccccccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccccc----cccccCCCCCcEEECcCCCcc
Q 020161 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRV----MENLQNLTNLQELWLGRNRIK 198 (330)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~ 198 (330)
+++|.+..++.... ++|++|++++|.+..+. .+..+++|+.|++++|.++. +..+..+ +|+.|++++|.+.
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99999987765433 78999999999998853 48899999999999998852 3445555 8999999999998
Q ss_pred ccccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc-cccccCCC
Q 020161 199 VVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLSR 273 (330)
Q Consensus 199 ~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~ 273 (330)
..+....++|+.|++++|.++..+ .+..+++|+.|++++|.+++++ .+..+++|++|++++|+++.+ ..+..+++
T Consensus 186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 265 (332)
T 2ft3_A 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL 265 (332)
T ss_dssp SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTT
T ss_pred ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCcc
Confidence 885555689999999999998874 5788999999999999999874 478899999999999999988 55889999
Q ss_pred CCeEeCCCCCCCchHHHHHHHhcc------ccccchhhccCCCcccc
Q 020161 274 LEDLWLNDNQIESLESIVEAVAGS------RETLTTIYLENNPCKIF 314 (330)
Q Consensus 274 L~~L~l~~n~l~~~~~~~~~~~~~------~~~L~~l~l~~n~~~~~ 314 (330)
|++|++++|+++.++. ..+.. .+.|+.+++++|++...
T Consensus 266 L~~L~l~~N~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGV---NDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp CCEEECCSSCCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred CCEEECCCCCCCccCh---hHccccccccccccccceEeecCccccc
Confidence 9999999999997752 22222 47799999999998643
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=5.7e-26 Score=205.47 Aligned_cols=270 Identities=20% Similarity=0.258 Sum_probs=156.9
Q ss_pred CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
.++++|+++++.+.+++. .+++|++|++++|.++++| .+.++++|++|++++|.+.+. +. ..++|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l-p~------~~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL-PD------LPPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCC-CC------CCTTCCEEEC
T ss_pred CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCccc-CC------CcccccEEEC
Confidence 455555555555555442 2367777777777777776 477777888888888777653 11 1247778888
Q ss_pred cCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccC
Q 020161 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN 183 (330)
Q Consensus 104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 183 (330)
++|.++.+|.+..+++|++|++++|.+.+++.. ..+|+.|++++|.+..+..+..+++|++|++++|.++.++. .
T Consensus 181 ~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~ 255 (454)
T 1jl5_A 181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--L 255 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--C
T ss_pred cCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--c
Confidence 887777777777778888888888877765442 35777888888877766567777788888888777754332 1
Q ss_pred CCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccc-----------------c-ccccceEEccCCCCCCCcC
Q 020161 184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFE-----------------E-CIALEELYLSHNGISKMEG 245 (330)
Q Consensus 184 ~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~-----------------~-~~~L~~l~l~~~~~~~~~~ 245 (330)
.++|+.|++++|.+.+.+. .+++|+.|++++|.+++.+.+. . +++|+.|++++|.+++++.
T Consensus 256 ~~~L~~L~l~~N~l~~l~~-~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~ 334 (454)
T 1jl5_A 256 PPSLEALNVRDNYLTDLPE-LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA 334 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC
T ss_pred ccccCEEECCCCcccccCc-ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccc
Confidence 3566677776666655421 2345666666666555432111 1 1355555565555555443
Q ss_pred CCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccc-------------cccchhhccCCCcc
Q 020161 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR-------------ETLTTIYLENNPCK 312 (330)
Q Consensus 246 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-------------~~L~~l~l~~n~~~ 312 (330)
. +++|++|++++|+++.++. .+++|+.|++++|+++.++.+ +..+..+ ++|+.|++++|++.
T Consensus 335 ~--~~~L~~L~L~~N~l~~lp~--~l~~L~~L~L~~N~l~~l~~i-p~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 335 L--PPRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLREFPDI-PESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp C--CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCC-CTTCCEEECCC-----------------------
T ss_pred c--CCcCCEEECCCCccccccc--hhhhccEEECCCCCCCcCCCC-hHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 2 4566677777766666544 456677777777776653221 1223333 66777777777765
Q ss_pred cc
Q 020161 313 IF 314 (330)
Q Consensus 313 ~~ 314 (330)
+.
T Consensus 410 ~~ 411 (454)
T 1jl5_A 410 EF 411 (454)
T ss_dssp --
T ss_pred cc
Confidence 54
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=6.7e-27 Score=217.23 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=92.3
Q ss_pred CCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
.++++|+++++.+.++++ ...+++|++|++++|.+..+++ .|.++++|++|++++|.+.+.. ...+..+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS---SSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC---HHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC---HHHhccCCCCcE
Confidence 678888888888877643 4456788888888888887664 5778888888888888887752 234667788888
Q ss_pred EEccCCcCcCC--CC-CCCCCcccEEEccCCC-CcCccc-cccccCCCcEEEccCCCCCC
Q 020161 101 LILRDNKLMKI--PD-VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPK 155 (330)
Q Consensus 101 L~l~~~~l~~~--~~-~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~ 155 (330)
|++++|.++.+ +. +..+++|++|++++|. +..++. ....+++|++|++++|.+.+
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 88888887743 33 6777888888888887 444432 23336777777777776654
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=6.5e-26 Score=215.81 Aligned_cols=283 Identities=27% Similarity=0.333 Sum_probs=206.6
Q ss_pred cCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChh-hhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161 23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 99 (330)
..++++|+++++.+.+++. ...+++|++|++++|.+..++ ..+.++++|++|++++|.+... +...|..+++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~l~~L~ 100 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL---SDKTFAFCTNLT 100 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC---CTTTTTTCTTCS
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc---ChhhhccCCCCC
Confidence 4678888888888888765 344688888888888888664 4578888888888888888765 223466788888
Q ss_pred EEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcc--c--ccCCCCccEEEcCC
Q 020161 100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME--E--IEHFHDLQILEFGS 172 (330)
Q Consensus 100 ~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~--~~~~~~L~~L~l~~ 172 (330)
+|++++|.++.+++ +..+++|++|++++|.+....+. ...+++|+.|++++|.+.+.. . ...+++|+.|++++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 88888888887763 77888888888888888766543 334788888888888877642 2 33567888888888
Q ss_pred cccccc--ccccCC---------------------------CCCcEEECcCCCcccc---ccCCCC--cccEEECCCCcc
Q 020161 173 NRLRVM--ENLQNL---------------------------TNLQELWLGRNRIKVV---NLCGLK--CIKKISLQSNRL 218 (330)
Q Consensus 173 ~~~~~~--~~l~~~---------------------------~~L~~L~l~~~~i~~~---~~~~~~--~L~~L~l~~~~l 218 (330)
|.++.. ..+..+ ++|+.|++++|.+.+. .+..++ +|+.|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 876422 222222 4566777777766554 333333 388888888877
Q ss_pred cccc--ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCC------c-----cccccCCCCCeEeCCCCC
Q 020161 219 TSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTL------V-----DDIQNLSRLEDLWLNDNQ 283 (330)
Q Consensus 219 ~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~------~-----~~~~~~~~L~~L~l~~n~ 283 (330)
++.+ .+..++.|+.|++++|.++++ ..+..+++|+.|++++|.... + ..+..+++|++|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 7662 467788888888888888765 357778888888888765432 1 146678899999999999
Q ss_pred CCchHHHHHHHhccccccchhhccCCCc
Q 020161 284 IESLESIVEAVAGSRETLTTIYLENNPC 311 (330)
Q Consensus 284 l~~~~~~~~~~~~~~~~L~~l~l~~n~~ 311 (330)
++.++ +..+..+++|+.|++++|.+
T Consensus 341 l~~~~---~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 341 IPGIK---SNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp BCCCC---TTTTTTCTTCCEEECTTCBS
T ss_pred cCCCC---hhHhccccCCcEEECCCCch
Confidence 88654 45578889999999999873
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.8e-25 Score=200.90 Aligned_cols=262 Identities=24% Similarity=0.293 Sum_probs=134.6
Q ss_pred CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (330)
+++|+++++.+.++|. .+++|++|++++|.++++|.. +++|++|++++|.+.+.. . ..++|++|++++
T Consensus 73 l~~L~l~~~~l~~lp~--~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~-----~--~~~~L~~L~L~~ 140 (454)
T 1jl5_A 73 AHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS-----D--LPPLLEYLGVSN 140 (454)
T ss_dssp CSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC-----S--CCTTCCEEECCS
T ss_pred CCEEEecCCccccCCC--CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCccc-----C--CCCCCCEEECcC
Confidence 3555555555555543 245555555555555554431 244555555555444321 0 013455555555
Q ss_pred CcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCcc-------------------
Q 020161 106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQ------------------- 166 (330)
Q Consensus 106 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~------------------- 166 (330)
|.++.+|.+..+++|++|++++|.+.+++.. ..+|+.|++++|.+.+++.+..+++|+
T Consensus 141 n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L 217 (454)
T 1jl5_A 141 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL 217 (454)
T ss_dssp SCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred CCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcc
Confidence 5555544444455555555555544443321 234455555555444443444444444
Q ss_pred -EEEcCCccccccccccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcC
Q 020161 167 -ILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245 (330)
Q Consensus 167 -~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~ 245 (330)
+|++++|.++.++.+..+++|++|++++|.+...+ ...++|+.|++++|.+++.+.. +++|+.+++++|.+++++.
T Consensus 218 ~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESC
T ss_pred cEEECcCCcCCcccccCCCCCCCEEECCCCcCCccc-ccccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccC
Confidence 44444444443333444555555555555444432 1224555555555555544322 2455556666555555432
Q ss_pred CCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL 316 (330)
Q Consensus 246 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 316 (330)
+. ++|+.|++++|++++++.+ .++|++|++++|+++.++. .+++|+.|++++|.+..++.
T Consensus 295 ~~--~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~lp~-------~~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 295 LP--PNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIELPA-------LPPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp CC--TTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC
T ss_pred cC--CcCCEEECcCCcCCcccCC--cCcCCEEECCCCccccccc-------cCCcCCEEECCCCccccccc
Confidence 22 4566666666666554321 2478888888888876542 24778888888888776543
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=2.8e-26 Score=222.94 Aligned_cols=287 Identities=24% Similarity=0.251 Sum_probs=180.4
Q ss_pred ccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCC-Ch-hhhhhcCCCCCEEeCCCCcCCccccccchhhcccCC
Q 020161 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~-~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 97 (330)
..+++++|+++++.+.++.+ ...+++|++|++++|.+. .+ +..|.++++|++|++++|.+.... +..|..+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~---p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH---PDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC---TTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC---HhHccCCcc
Confidence 56788999999998888643 455788999999998444 56 446888999999999998888763 345667888
Q ss_pred CcEEEccCCcCcC-CC-C--CCCCCcccEEEccCCCCcCccc--cccccCCCcEEEccCCCCCCc--ccccCC--CCccE
Q 020161 98 LEELILRDNKLMK-IP-D--VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNEVPKM--EEIEHF--HDLQI 167 (330)
Q Consensus 98 L~~L~l~~~~l~~-~~-~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~--~~L~~ 167 (330)
|++|++++|.+++ ++ . +..+++|++|++++|.+..... ....+++|+.|++++|.+... ..+..+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 9999999888875 33 2 7788889999999988877643 234478888888888877652 333333 45566
Q ss_pred EEcCCccccc--cccccCCC------CCcEEECcCCCcccc---------------------------------------
Q 020161 168 LEFGSNRLRV--MENLQNLT------NLQELWLGRNRIKVV--------------------------------------- 200 (330)
Q Consensus 168 L~l~~~~~~~--~~~l~~~~------~L~~L~l~~~~i~~~--------------------------------------- 200 (330)
|+++.|.+.. +..+..++ .|+.|++++|.+...
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 6665555432 12222222 255555555532211
Q ss_pred ccCC--CCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCC
Q 020161 201 NLCG--LKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLS 272 (330)
Q Consensus 201 ~~~~--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~ 272 (330)
.+.+ .++++.|++++|.++.. ..+..+++|+.|++++|.++++ ..+..+++|++|++++|.++.. ..+..++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 0111 14566666666655544 2345566666666666666554 2355566666666666666554 3455566
Q ss_pred CCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161 273 RLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 273 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
+|+.|++++|.++.++ +..+..+++|+.|++++|.+...
T Consensus 339 ~L~~L~L~~N~i~~~~---~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQ---DQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp TCCEEECCSCCCCCCC---SSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCEEECCCCCCCccC---hhhhcCCCCCCEEECCCCCCCcc
Confidence 6666666666665443 23345556666666666665443
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=7e-26 Score=213.68 Aligned_cols=130 Identities=25% Similarity=0.335 Sum_probs=98.3
Q ss_pred ccCCCcEEeccCcccccCCCC--CCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCC
Q 020161 22 IDLSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~~--~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 98 (330)
++.++++||+++|.++.+++. ..+++|++|++++|.|+.+++ .|.++++|++|++++|.+... +...|..+++|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l---~~~~f~~L~~L 126 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSL 126 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---CGGGGTTCTTC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC---CHHHhcCCCCC
Confidence 356788999999888888753 446889999999998888866 488888999999999888775 33456778888
Q ss_pred cEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcc--ccccccCCCcEEEccCCCCC
Q 020161 99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSH--GLSNVTDTLKELYVSKNEVP 154 (330)
Q Consensus 99 ~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 154 (330)
++|++++|.++.+++ ++.+++|++|++++|.+..+. .....+++|+.|++++|.+.
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 888888888887764 677888888888888776543 22333667777777766543
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.5e-26 Score=206.61 Aligned_cols=238 Identities=26% Similarity=0.382 Sum_probs=158.9
Q ss_pred cCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161 23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 101 (330)
......+++++..+..+|. ..+++++.|++++|.+..++. .|.++++|++|++++|.+... ....|..+++|++|
T Consensus 42 ~~~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 42 SNQFSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI---EIGAFNGLANLNTL 117 (440)
T ss_dssp CTTSCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE---CGGGGTTCSSCCEE
T ss_pred CCCCCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc---ChhhccCCccCCEE
Confidence 3345677888888888775 556788888888888887664 478888888888888887775 33456677888888
Q ss_pred EccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc-ccccc
Q 020161 102 ILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN-RLRVM 178 (330)
Q Consensus 102 ~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~ 178 (330)
++++|.++.++. +..+++|++|++++|.+..++. ..+..+++|++|+++++ .+..+
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---------------------~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS---------------------YAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT---------------------TTTTTCTTCCEEECCCCTTCCEE
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH---------------------HHhhhCcccCEeCCCCCCCccee
Confidence 888888887764 6667777777777776654433 23445556666666653 23221
Q ss_pred --ccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCC
Q 020161 179 --ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVN 251 (330)
Q Consensus 179 --~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~ 251 (330)
..+..+++|++|++++|.+... .+..+++|+.|++++|.++.. ..+..+++|+.|++++|.++++ ..+..+++
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred CcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 2356667777777777776655 455666677777777766655 2455666667777776666654 24556666
Q ss_pred CCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCC
Q 020161 252 LHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIE 285 (330)
Q Consensus 252 L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~ 285 (330)
|+.|++++|+++.+ ..+..+++|+.|++++|++.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 66777766666655 33556666666666666655
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.3e-26 Score=206.71 Aligned_cols=237 Identities=25% Similarity=0.357 Sum_probs=163.2
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
....+++++..+..+|. ..++++++|++++|.+..+++ .|.++++|++|++++|.+.... ...|..+++|++|++
T Consensus 55 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE---VGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC---hhhccCcccCCEEEC
Confidence 44667777777777764 556778888888887776643 4777788888888887777652 234566777777777
Q ss_pred cCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc-ccccc--
Q 020161 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN-RLRVM-- 178 (330)
Q Consensus 104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-- 178 (330)
++|.++.++. +..+++|++|++++|.+..++. ..+..+++|+.|+++++ .+..+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS---------------------YAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT---------------------TTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCH---------------------hHHhcCCcccEEeCCCCCCccccCh
Confidence 7777776654 5566777777777776654432 23455566666666653 33322
Q ss_pred ccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCC
Q 020161 179 ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLH 253 (330)
Q Consensus 179 ~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~ 253 (330)
..+..+++|+.|++++|.+... .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.++++ ..+..+++|+
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 2466777888888888877766 566777788888888877766 2466777788888888877765 3466777788
Q ss_pred EEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161 254 VLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 254 ~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~ 286 (330)
.|++++|+++.+ ..+..+++|+.|++++|++..
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 888888877766 345667778888888877663
No 46
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.1e-24 Score=203.14 Aligned_cols=237 Identities=26% Similarity=0.308 Sum_probs=207.5
Q ss_pred CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
+++++|+++++.+..++. .+++|++|++++|.++++|. .+++|++|++++|.+..... .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-------~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA-------LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC-------CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC-------CCCCcCEEEC
Confidence 789999999999999887 67999999999999999987 78999999999999887421 4688999999
Q ss_pred cCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccC
Q 020161 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN 183 (330)
Q Consensus 104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 183 (330)
++|.++.+|. .+++|++|++++|.+..++. .+.+|+.|++++|.+..+. ..+++|+.|++++|.++.++. .
T Consensus 129 ~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~--~ 199 (622)
T 3g06_A 129 FGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT--L 199 (622)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--C
T ss_pred CCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC--c
Confidence 9999999886 35899999999999987764 3578999999999998865 567899999999999875543 2
Q ss_pred CCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161 184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263 (330)
Q Consensus 184 ~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 263 (330)
.++|+.|++++|.+...+- .+++|+.|++++|.+++.+ ..+++|+.|++++|.++.++. .+++|+.|++++|+++
T Consensus 200 ~~~L~~L~L~~N~l~~l~~-~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CTTCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC
T ss_pred cchhhEEECcCCcccccCC-CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC
Confidence 4789999999999887642 3578999999999999887 567899999999999999886 6789999999999999
Q ss_pred Cc-cccccCCCCCeEeCCCCCCCc
Q 020161 264 LV-DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 264 ~~-~~~~~~~~L~~L~l~~n~l~~ 286 (330)
.+ ..+..+++|+.|++++|+++.
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred cCCHHHhhccccCEEEecCCCCCC
Confidence 88 568899999999999999984
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=7.2e-26 Score=220.04 Aligned_cols=284 Identities=20% Similarity=0.218 Sum_probs=229.6
Q ss_pred CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChh-hhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (330)
-+..+++++.++.+|. .++++++|++++|.++.++ ..|.++++|++|++++|...... ....|..+++|++|+++
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i--~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI--DKEAFRNLPNLRILDLG 81 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE--CTTTTSSCTTCCEEECT
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc--CHHHhcCCCCCCEEECC
Confidence 4678999999999997 8899999999999999774 46999999999999999654432 23467889999999999
Q ss_pred CCcCcCC-CC-CCCCCcccEEEccCCCCcCc-ccc--ccccCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCcccc
Q 020161 105 DNKLMKI-PD-VSIFKKLSVFDVSFNEITSS-HGL--SNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLR 176 (330)
Q Consensus 105 ~~~l~~~-~~-~~~~~~L~~L~l~~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 176 (330)
+|.+..+ |. +..+++|++|++++|.+.+. +.. ...+++|+.|++++|.+.+. ..+..+++|++|++++|.++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 9999976 43 88999999999999999863 222 44589999999999998774 45899999999999999885
Q ss_pred c--cccccCC--CCCcEEECcCCCcccc---ccCCCC------cccEEECCCCcccccc---------------------
Q 020161 177 V--MENLQNL--TNLQELWLGRNRIKVV---NLCGLK------CIKKISLQSNRLTSMK--------------------- 222 (330)
Q Consensus 177 ~--~~~l~~~--~~L~~L~l~~~~i~~~---~~~~~~------~L~~L~l~~~~l~~~~--------------------- 222 (330)
. +..+..+ ++|+.|+++.|.+... .+..++ +|+.|++++|.++...
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 3 2445544 7899999999987664 333333 3999999998654320
Q ss_pred -----------------ccc--cccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeC
Q 020161 223 -----------------GFE--ECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWL 279 (330)
Q Consensus 223 -----------------~~~--~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l 279 (330)
.+. .+++|+.|++++|.+.++ ..+..+++|+.|++++|+++.. ..+..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 011 136899999999998875 4578899999999999999877 56888999999999
Q ss_pred CCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161 280 NDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL 316 (330)
Q Consensus 280 ~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 316 (330)
++|.++.+. +..+..+++|+.|++++|.+.....
T Consensus 322 s~N~l~~~~---~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 322 SYNLLGELY---SSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp ESCCCSCCC---SCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred CCCCCCccC---HHHhcCCCCCCEEECCCCCCCccCh
Confidence 999998653 3557889999999999999877653
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.4e-26 Score=198.74 Aligned_cols=231 Identities=20% Similarity=0.270 Sum_probs=154.2
Q ss_pred CCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEE
Q 020161 45 PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVF 123 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L 123 (330)
+++|++|++++|.++.+++ .+..+++|++|++++|.+.+.. .+..+++|++|++++|.++.++. .++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-----DLESLSTLRTLDLNNNYVQELLV---GPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-----EETTCTTCCEEECCSSEEEEEEE---CTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-----hhhhcCCCCEEECcCCccccccC---CCCcCEE
Confidence 3456666666666665443 4556666666666666555421 14445556666666555554431 2455555
Q ss_pred EccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc-
Q 020161 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV- 200 (330)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~- 200 (330)
++++|.+..... ..+++|++|++++|.++.. ..+..+++|++|++++|.+...
T Consensus 105 ~l~~n~l~~~~~------------------------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 105 HAANNNISRVSC------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp ECCSSCCSEEEE------------------------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred ECCCCccCCcCc------------------------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 555554443322 2245566666666665432 2355566777777777776655
Q ss_pred --cc-CCCCcccEEECCCCccccccccccccccceEEccCCCCCCC-cCCCCCCCCCEEEcCCCCCCCc-cccccCCCCC
Q 020161 201 --NL-CGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLE 275 (330)
Q Consensus 201 --~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~ 275 (330)
.+ ..+++|+.|++++|.++..+....+++|+.|++++|.++++ +.+..+++|++|++++|+++.+ ..+..+++|+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~ 240 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred HHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCC
Confidence 22 34677888888888888776666788899999999998886 4577788999999999999977 5577889999
Q ss_pred eEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161 276 DLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309 (330)
Q Consensus 276 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n 309 (330)
.|++++|++.. +.++..+..+++|+.++++++
T Consensus 241 ~L~l~~N~~~~--~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 241 HFDLRGNGFHC--GTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EEECTTCCCBH--HHHHHHHHTCHHHHHHHHHHH
T ss_pred EEEccCCCccC--cCHHHHHhccccceEEECCCc
Confidence 99999999984 345677788899999998844
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=196.07 Aligned_cols=259 Identities=21% Similarity=0.278 Sum_probs=203.1
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
...+.+++++.+..+|. ..+++|++|++++|.++.++. .+.++++|++|++++|.+.+.. ...+..+++|++|++
T Consensus 32 ~~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE---EDSFSSLGSLEHLDL 107 (353)
T ss_dssp TTSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred CCeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC---HhhcCCCCCCCEEEC
Confidence 34557888999999886 566899999999999998877 5899999999999999998763 335677899999999
Q ss_pred cCCcCcCCCC--CCCCCcccEEEccCCCCcCccc--cccccCCCcEEEccCCC-CCCc--ccccCCCCccEEEcCCcccc
Q 020161 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNE-VPKM--EEIEHFHDLQILEFGSNRLR 176 (330)
Q Consensus 104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~L~~L~l~~~~~~ 176 (330)
++|.++.++. +..+++|++|++++|.+..++. ....+++|+.|++++|. +... ..+..+++|++|++++|.++
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 9999998875 7789999999999999988776 34458899999999984 5443 45788889999999988875
Q ss_pred c--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc-----ccccccccceEEccCCCCCCC---
Q 020161 177 V--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK-----GFEECIALEELYLSHNGISKM--- 243 (330)
Q Consensus 177 ~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~L~~l~l~~~~~~~~--- 243 (330)
. +..+..+++|++|++++|.+... .+..+++|+.|++++|.+++.+ ....+..++.++++++.+++.
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 3 45677888899999988887655 2445778888888888887652 223456677777777776652
Q ss_pred ---cCCCCCCCCCEEEcCCCCCCCcc--ccccCCCCCeEeCCCCCCCch
Q 020161 244 ---EGLSTLVNLHVLDVSSNKLTLVD--DIQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 244 ---~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~n~l~~~ 287 (330)
+.+..+++|++|++++|+++.++ .+..+++|++|++++|++...
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 24567788888888888888773 257788888888888888753
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.4e-24 Score=204.78 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=125.8
Q ss_pred CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (330)
.+..++++..++.+|. ..++++++|++++|.|+.+++ .|.++++|++|++++|.+... +.++|..+++|++|+++
T Consensus 33 ~~~~~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 33 NITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TTEEECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEcc
Confidence 4567889999999986 678899999999999999986 599999999999999999886 34467889999999999
Q ss_pred CCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCccc
Q 020161 105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 105 ~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 175 (330)
+|.++.+|. +..+++|++|++++|.+..+++. ...+++|+.|++++|.+... ..+..+++|++|++++|.+
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 999998875 78899999999999999988765 34589999999999988763 4567788899988887654
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-24 Score=187.54 Aligned_cols=263 Identities=21% Similarity=0.253 Sum_probs=179.5
Q ss_pred CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (330)
.+.++++++.+..+|. ..++++++|++++|.++.++.. |.++++|++|++++|.+...... ...+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC-SQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE-EHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc-ccccccccccCEEECC
Confidence 4578999999999886 6678999999999999998875 78999999999999988764211 2345568899999999
Q ss_pred CCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc--ccccc
Q 020161 105 DNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENL 181 (330)
Q Consensus 105 ~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~l 181 (330)
+|.+..++. +..+++|++|++++|.+...... ..+..+++|++|++++|.+. .+..+
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--------------------SVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTT--------------------TTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccc--------------------hhhhhccCCCEEECCCCcCCccchhhc
Confidence 998887765 66778888888888877655431 12333444444444444443 11234
Q ss_pred cCCCCCcEEECcCCCccc--c--ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCC
Q 020161 182 QNLTNLQELWLGRNRIKV--V--NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLH 253 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~i~~--~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~ 253 (330)
..+++|++|++++|.+.+ . .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++++ .+..+++|+
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence 455556666666655543 1 455566677777777766665 24566778888888888887764 467788899
Q ss_pred EEEcCCCCCCCc--cccccC-CCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCc
Q 020161 254 VLDVSSNKLTLV--DDIQNL-SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311 (330)
Q Consensus 254 ~L~l~~n~~~~~--~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~ 311 (330)
.|++++|++++. ..+..+ ++|++|++++|+++...+. ..+..-+...+.+.+..+..
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~-~~~~~~l~~~~~~~~~~~~~ 286 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKDQRQLLVEVERM 286 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG-HHHHHHHHHTGGGBSCGGGC
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh-HHHHHHHHhhhhhhcccccc
Confidence 999999988876 456666 4899999999998753221 22222234455555544443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=196.05 Aligned_cols=263 Identities=20% Similarity=0.236 Sum_probs=217.7
Q ss_pred CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccE
Q 020161 45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSV 122 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~ 122 (330)
++.....++++++++.+|..+. ++|++|++++|.+.... ...+..+++|++|++++|.++.+++ +..+++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYIS---NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccC---HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4555668999999999998654 59999999999998763 3356789999999999999998753 888999999
Q ss_pred EEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcc---cccCCCCccEEEcCCcc-ccc--cccccCCCCCcEEECcCC
Q 020161 123 FDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME---EIEHFHDLQILEFGSNR-LRV--MENLQNLTNLQELWLGRN 195 (330)
Q Consensus 123 L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~-~~~--~~~l~~~~~L~~L~l~~~ 195 (330)
|++++|.+..++.. ...+++|++|++++|.+..+. .+..+++|++|++++|. ++. ...+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 99999999987765 345899999999999988853 47889999999999984 543 356788999999999999
Q ss_pred Ccccc---ccCCCCcccEEECCCCccccccc--cccccccceEEccCCCCCCCc-----CCCCCCCCCEEEcCCCCCCCc
Q 020161 196 RIKVV---NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKME-----GLSTLVNLHVLDVSSNKLTLV 265 (330)
Q Consensus 196 ~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~l~l~~~~~~~~~-----~~~~~~~L~~L~l~~n~~~~~ 265 (330)
.+.+. .+..+++|++|++++|.++..+. +..+++|+.|++++|.+++.+ .......++.++++++.+++.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 88776 67788999999999999877643 446899999999999998753 234567889999999998764
Q ss_pred ------cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 266 ------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 266 ------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
..+..+++|++|++++|+++.++ ..++..+++|+.|++++|++.+..
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccC---HHHHhcCCCCCEEEeeCCCccCcC
Confidence 45788999999999999999776 345678999999999999977654
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=4.3e-25 Score=190.43 Aligned_cols=239 Identities=19% Similarity=0.262 Sum_probs=165.9
Q ss_pred CCcCEEecCCCCCCC---hhhhhhcCCCCCEEeCCC-CcCCccccccchhhcccCCCcEEEccCCcCc-CCCC-CCCCCc
Q 020161 46 TNLTELDLTANRLTS---LDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLM-KIPD-VSIFKK 119 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~---l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~-~~~~~~ 119 (330)
.++++|++++|.+.+ +|..+.++++|++|++++ |.+.+..+ ..+..+++|++|++++|.++ .+|. +..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP---PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC---GGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC---hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 578999999998884 777888999999999984 77776543 34667888999999988887 4554 777888
Q ss_pred ccEEEccCCCCcCc-cccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCC-CCcEEECcCCCc
Q 020161 120 LSVFDVSFNEITSS-HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLT-NLQELWLGRNRI 197 (330)
Q Consensus 120 L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~-~L~~L~l~~~~i 197 (330)
|++|++++|.+.+. +.....+++|+.|++++|.+.+ ..+..+..++ .|++|++++|.+
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------------~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG--------------------AIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--------------------ECCGGGGCCCTTCCEEECCSSEE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC--------------------cCCHHHhhhhhcCcEEECcCCee
Confidence 88888888877643 2223334555555555555442 1223334443 455555555544
Q ss_pred ccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC-CcCCCCCCCCCEEEcCCCCCCCc--cccc
Q 020161 198 KVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-MEGLSTLVNLHVLDVSSNKLTLV--DDIQ 269 (330)
Q Consensus 198 ~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~--~~~~ 269 (330)
.+. .+..+. |+.|++++|.+++. ..+..+++|+.|++++|.+++ ++.+..+++|++|++++|++++. ..+.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence 422 233333 66666666666544 345677788888888888775 35577788999999999999844 6688
Q ss_pred cCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161 270 NLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312 (330)
Q Consensus 270 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 312 (330)
.+++|++|++++|+++.. ++.. .++++|+.+++++|++.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~---ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGE---IPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GCTTCCEEECCSSEEEEE---CCCS-TTGGGSCGGGTCSSSEE
T ss_pred cCcCCCEEECcCCccccc---CCCC-ccccccChHHhcCCCCc
Confidence 899999999999998832 1222 67899999999999943
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-24 Score=196.53 Aligned_cols=229 Identities=20% Similarity=0.269 Sum_probs=154.8
Q ss_pred CCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEE
Q 020161 45 PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVF 123 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L 123 (330)
+++|++|++++|.+..+++ .|..+++|++|++++|.+++..+ +..+++|++|++++|.++.++. .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNYVQELLV---GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEECCSSEEEEEEE---CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEecCCcCCCCCC---CCCcCEE
Confidence 3456666666666665543 45666666666666666554321 4445566666666665554432 1455555
Q ss_pred EccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc-
Q 020161 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV- 200 (330)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~- 200 (330)
++++|.+...+. ..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+.
T Consensus 105 ~L~~N~l~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 105 HAANNNISRVSC------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp ECCSSCCCCEEE------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred ECcCCcCCCCCc------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 555555444332 2335566666666665422 3455667777777777776654
Q ss_pred --ccC-CCCcccEEECCCCccccccccccccccceEEccCCCCCCC-cCCCCCCCCCEEEcCCCCCCCc-cccccCCCCC
Q 020161 201 --NLC-GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLE 275 (330)
Q Consensus 201 --~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~ 275 (330)
.+. .+++|+.|++++|.+++.+....+++|+.|++++|.++++ +.+..+++|+.|++++|.++++ ..+..+++|+
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 240 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred hHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence 232 5678888888888888777666788999999999998886 4577888999999999999987 5577889999
Q ss_pred eEeCCCCCCCchHHHHHHHhccccccchhhcc
Q 020161 276 DLWLNDNQIESLESIVEAVAGSRETLTTIYLE 307 (330)
Q Consensus 276 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~ 307 (330)
.|++++|++.. +.++..+..++.|+.+++.
T Consensus 241 ~L~l~~N~l~c--~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 241 HFDLRGNGFHC--GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTCCBCH--HHHHHHHTTCHHHHHHHHH
T ss_pred EEEcCCCCCcC--cchHHHHHhCCCCcEEecc
Confidence 99999999884 4456777889999999886
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=1.7e-27 Score=216.58 Aligned_cols=298 Identities=25% Similarity=0.294 Sum_probs=167.1
Q ss_pred ccccccCCCcEEeccCcccccCC------CCCCC-CCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCcCCccc
Q 020161 18 QAVEIDLSNTVLDLTSFQLHDLD------SVEFP-TNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDDAA 85 (330)
Q Consensus 18 ~~~~~~~~l~~l~l~~~~l~~~~------~~~~~-~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~ 85 (330)
+.+...+++++|+++++.+.+.. ..... ++|++|++++|.+.. ++..+..+++|++|++++|.+.+..
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 129 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence 33444455666666665554421 01111 156666666666652 3444566666666666666655432
Q ss_pred cccchh--hcccCCCcEEEccCCcCcCCC-----C-CCCCCcccEEEccCCCCcCccc--ccc----ccCCCcEEEccCC
Q 020161 86 IEPISR--WDALAGLEELILRDNKLMKIP-----D-VSIFKKLSVFDVSFNEITSSHG--LSN----VTDTLKELYVSKN 151 (330)
Q Consensus 86 ~~~~~~--~~~~~~L~~L~l~~~~l~~~~-----~-~~~~~~L~~L~l~~~~~~~~~~--~~~----~~~~L~~L~l~~~ 151 (330)
+..+.. ....++|++|++++|.++... . +..+++|++|++++|.+..... +.. ..++|+.|++++|
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 222211 112345666666666655321 1 3345666666666666543211 111 1336677777776
Q ss_pred CCCCc------ccccCCCCccEEEcCCcccccc------cc-ccCCCCCcEEECcCCCcccc-------ccCCCCcccEE
Q 020161 152 EVPKM------EEIEHFHDLQILEFGSNRLRVM------EN-LQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKI 211 (330)
Q Consensus 152 ~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~-l~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L 211 (330)
.+... ..+..+++|++|++++|.++.. .. ...+++|++|++++|.+... .+..+++|++|
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence 66551 2344566677777777665321 11 12456677777777766653 23345667777
Q ss_pred ECCCCcccccc--cc-----ccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc--cccc-----cC
Q 020161 212 SLQSNRLTSMK--GF-----EECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV--DDIQ-----NL 271 (330)
Q Consensus 212 ~l~~~~l~~~~--~~-----~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~--~~~~-----~~ 271 (330)
++++|.++... .+ ...+.|+.|++++|.+++. ..+..+++|++|++++|++++. ..+. ..
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 77777665431 11 1235777777777776653 2344567888888888877654 2222 15
Q ss_pred CCCCeEeCCCCCCCchH-HHHHHHhccccccchhhccCCCccccc
Q 020161 272 SRLEDLWLNDNQIESLE-SIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 272 ~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
++|++|++++|.+++.+ ..++..+..+++|+.|++++|++++..
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 68888888888877421 133455667888888888888876654
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=3.3e-23 Score=176.33 Aligned_cols=214 Identities=23% Similarity=0.317 Sum_probs=143.7
Q ss_pred cEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (330)
Q Consensus 27 ~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (330)
+++++++..+..+|. ..++++++|++++|.+..++. .+..+++|++|++++|.+.+.. ...+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID---AAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC---HhhcCCccCCCEEeCCC
Confidence 678888888888875 567889999999999887775 4788888999999888887753 23456678888888888
Q ss_pred Cc-CcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc--cc
Q 020161 106 NK-LMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--EN 180 (330)
Q Consensus 106 ~~-l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~ 180 (330)
|. +..+++ +..+++|++|++++|.+....+ ..+..+++|++|++++|.++.. ..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP---------------------GLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---------------------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECH---------------------hHhhCCcCCCEEECCCCcccccCHhH
Confidence 86 666532 5666677777777666544322 1234445555555555544322 11
Q ss_pred ccCCCCCcEEECcCCCccccccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCC--cCCCCCCCCCEEE
Q 020161 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLD 256 (330)
Q Consensus 181 l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~ 256 (330)
+..+++|+ .|++++|.++..+ .+..+++|+.|++++|.++++ ..+..+++|+.|+
T Consensus 149 ~~~l~~L~---------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 149 FRDLGNLT---------------------HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp TTTCTTCC---------------------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred hccCCCcc---------------------EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence 33444444 4444444444442 245566777777777776664 3566777888888
Q ss_pred cCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161 257 VSSNKLTLV--DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 257 l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~ 286 (330)
+++|++++. ..+..+++|++|++++|++..
T Consensus 208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 888888777 347778888888888888774
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.5e-24 Score=187.04 Aligned_cols=217 Identities=19% Similarity=0.211 Sum_probs=163.3
Q ss_pred CCCCEEeCCCCcCCc--cccccchhhcccCCCcEEEccC-CcCcC-CCC-CCCCCcccEEEccCCCCcCccccccccCCC
Q 020161 69 SNLKKLSLRQNLIDD--AAIEPISRWDALAGLEELILRD-NKLMK-IPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143 (330)
Q Consensus 69 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~-~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 143 (330)
.+++.|+++++.+.+ ..+ ..+..+++|++|++++ +.+.+ +|. +..+++|++|++++|.+.+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~---~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--------- 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP---SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--------- 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC---GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC---------
T ss_pred ceEEEEECCCCCccCCcccC---hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC---------
Confidence 467777777777765 332 3455677777777773 66553 443 556666666666666554221
Q ss_pred cEEEccCCCCCCcccccCCCCccEEEcCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCC-cccEEECCCCc
Q 020161 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLK-CIKKISLQSNR 217 (330)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~-~L~~L~l~~~~ 217 (330)
+..+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+. .+..++ .|+.|++++|.
T Consensus 118 ------------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 118 ------------PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ------------CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ------------CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 234566777788888888775 446688899999999999998744 566666 89999999999
Q ss_pred cccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHH
Q 020161 218 LTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVE 292 (330)
Q Consensus 218 l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~ 292 (330)
+++. ..+..+. |+.|++++|.+++. ..+..+++|+.|++++|++++. +.+..+++|++|++++|+++.. ++
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p 261 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT---LP 261 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC---CC
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc---CC
Confidence 8854 3455555 99999999999864 4578899999999999999866 6678889999999999999832 24
Q ss_pred HHhccccccchhhccCCCccc
Q 020161 293 AVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 293 ~~~~~~~~L~~l~l~~n~~~~ 313 (330)
..+..+++|+.|++++|++.+
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEE
T ss_pred hHHhcCcCCCEEECcCCcccc
Confidence 557889999999999999874
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-23 Score=181.21 Aligned_cols=236 Identities=25% Similarity=0.266 Sum_probs=170.2
Q ss_pred CEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCC---C-CCCCCCcccEEE
Q 020161 49 TELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI---P-DVSIFKKLSVFD 124 (330)
Q Consensus 49 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~-~~~~~~~L~~L~ 124 (330)
+.+++++++++.+|..+ .++|++|++++|.+... +...|..+++|++|++++|.++.+ + .+..+++
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~----- 79 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS----- 79 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC-----
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCcc---CHhHhhccccCCEEECCCCccCcccCcccccccccc-----
Confidence 45666666666666533 24666666666665543 112234555666666665555432 1 1223444
Q ss_pred ccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc---ccccCCCCCcEEECcCCCcccc
Q 020161 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV 200 (330)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~ 200 (330)
|+.|++++|.+..+ ..+..+++|++|++++|.++.. ..+..+++|++|++++|.+...
T Consensus 80 ------------------L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 80 ------------------LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp ------------------CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred ------------------cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 45555555544442 3366778888888888877543 3578889999999999988765
Q ss_pred ---ccCCCCcccEEECCCCcccc--c-cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--ccccc
Q 020161 201 ---NLCGLKCIKKISLQSNRLTS--M-KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQN 270 (330)
Q Consensus 201 ---~~~~~~~L~~L~l~~~~l~~--~-~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~ 270 (330)
.+..+++|++|++++|.+++ . ..+..+++|+.|++++|.++++ ..+..+++|++|++++|++++. ..+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 47788999999999999886 2 4578899999999999999986 4578899999999999999987 35788
Q ss_pred CCCCCeEeCCCCCCCchHHHHHHHhcccc-ccchhhccCCCccccc
Q 020161 271 LSRLEDLWLNDNQIESLESIVEAVAGSRE-TLTTIYLENNPCKIFK 315 (330)
Q Consensus 271 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~ 315 (330)
+++|++|++++|+++... +..+..++ +|+.|++++|++.+..
T Consensus 222 l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CTTCCEEECTTSCCCBCS---SSSCCCCCTTCCEEECTTCCEECSG
T ss_pred cccCCEeECCCCCCcccC---HHHHHhhhccCCEEEccCCCeeccc
Confidence 999999999999998643 34466664 9999999999987654
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=4.2e-23 Score=177.55 Aligned_cols=193 Identities=23% Similarity=0.335 Sum_probs=98.5
Q ss_pred hcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcE
Q 020161 66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE 145 (330)
Q Consensus 66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 145 (330)
..+++|++|+++++.+... ..+..+++|++|++++|.+..++.+..+++|++|++++|.+..+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-----~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~------------ 100 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV------------ 100 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC------------
T ss_pred HHcCCcCEEEeeCCCccCc-----hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc------------
Confidence 3455566666666555442 12444556666666666555555455555555555555555444
Q ss_pred EEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCcccccccc
Q 020161 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGF 224 (330)
Q Consensus 146 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~ 224 (330)
..+..+++|++|++++|.++....+..+++|++|++++|.+.+. .+..+++|+.|++++|.++..+.+
T Consensus 101 -----------~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l 169 (308)
T 1h6u_A 101 -----------SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL 169 (308)
T ss_dssp -----------GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred -----------hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhh
Confidence 33444444444444444444333344444444444444444433 244444455555555554444444
Q ss_pred ccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCc
Q 020161 225 EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 225 ~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~ 286 (330)
..+++|+.|++++|.+++++.+..+++|++|++++|++++.+.+..+++|+.|++++|+++.
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 45555555555555555554455555555555555555555445555555555555555543
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=2.7e-24 Score=185.46 Aligned_cols=241 Identities=18% Similarity=0.197 Sum_probs=138.9
Q ss_pred CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccc-cccch----hhcccCCCcEEEccCCcCcC-CCC-C--C
Q 020161 45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAA-IEPIS----RWDALAGLEELILRDNKLMK-IPD-V--S 115 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~----~~~~~~~L~~L~l~~~~l~~-~~~-~--~ 115 (330)
.++|+++++++|.+ .+|..+... |+.|++++|.+.... +.... .+..+++|++|++++|.+++ +|. + .
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 35688888888888 777765544 888888888775431 11110 11257888899998888874 554 3 6
Q ss_pred CCCcccEEEccCCCCcCcccccccc-----CCCcEEEccCCCCCCc--ccccCCCCccEEEcCCccccc----cccccCC
Q 020161 116 IFKKLSVFDVSFNEITSSHGLSNVT-----DTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRV----MENLQNL 184 (330)
Q Consensus 116 ~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~----~~~l~~~ 184 (330)
.+++|++|++++|.+.+.+.....+ ++|++|++++|.+... ..+..+++|++|++++|.+.. +..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--- 195 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL--- 195 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS---
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH---
Confidence 7888888888888887764332223 6677777777766653 345566666666666665321 1122
Q ss_pred CCCcEEECcCCCccccccCCCCcccEEECCCCcccccc-----ccccccccceEEccCCCCCCC---cCCCCCCCCCEEE
Q 020161 185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK-----GFEECIALEELYLSHNGISKM---EGLSTLVNLHVLD 256 (330)
Q Consensus 185 ~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~L~~L~ 256 (330)
.+..+++|++|++++|.++..+ .+..+++|+.|++++|.+++. +.+..+++|++|+
T Consensus 196 ----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 196 ----------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259 (312)
T ss_dssp ----------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred ----------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence 1133444444444444444321 112345555555555555542 2334455666666
Q ss_pred cCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161 257 VSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 257 l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
+++|+++.++.... ++|++|++++|++++++ . +..+++|+.|++++|++++
T Consensus 260 Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p----~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 260 LSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNP----S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTSCCSSCCSSCC-SEEEEEECCSSCCCSCC----C-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCccChhhhhcc-CCceEEECCCCCCCCCh----h-HhhCCCCCEEeccCCCCCC
Confidence 66666665422111 56666666666666542 1 4555666666666666544
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=5.7e-23 Score=176.71 Aligned_cols=195 Identities=22% Similarity=0.337 Sum_probs=163.8
Q ss_pred cccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCC
Q 020161 93 DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172 (330)
Q Consensus 93 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 172 (330)
..+++|++|+++++.+..++.+..+++|++|++++|.+. .+..+..+++|++|++++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-----------------------~~~~~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-----------------------DLAPLKNLTKITELELSG 94 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-----------------------CCGGGTTCCSCCEEECCS
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-----------------------CChhHccCCCCCEEEccC
Confidence 345667777777766666655555556666665555543 333366778888999999
Q ss_pred ccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCC
Q 020161 173 NRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVN 251 (330)
Q Consensus 173 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 251 (330)
|.++.++.+..+++|++|++++|.+.+. .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+++++.+..+++
T Consensus 95 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~ 174 (308)
T 1h6u_A 95 NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK 174 (308)
T ss_dssp CCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred CcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCC
Confidence 8888777889999999999999998887 688899999999999999999888899999999999999999888999999
Q ss_pred CCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161 252 LHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 252 L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 315 (330)
|+.|++++|++++++.+..+++|++|++++|++++++. +..+++|+.|++++|++...+
T Consensus 175 L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 175 LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEEEEEEECCC
T ss_pred CCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc-----ccCCCCCCEEEccCCeeecCC
Confidence 99999999999999778999999999999999998752 688999999999999987754
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=9.5e-24 Score=182.42 Aligned_cols=233 Identities=20% Similarity=0.240 Sum_probs=182.3
Q ss_pred CcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEc
Q 020161 47 NLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125 (330)
Q Consensus 47 ~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l 125 (330)
.++..+++.+.+...+.. +..+++|++|++++|.+... ....+..+++|++|++++|.+++++++..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC---CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC---CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEEC
Confidence 345556666666654443 55677899999999888875 33456678888888888888876655677777777777
Q ss_pred cCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---cc
Q 020161 126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NL 202 (330)
Q Consensus 126 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~ 202 (330)
++|.+..++ ..++|++|++++|.++... ...+++|++|++++|.+... .+
T Consensus 88 s~n~l~~l~--------------------------~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~ 140 (317)
T 3o53_A 88 NNNYVQELL--------------------------VGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDE 140 (317)
T ss_dssp CSSEEEEEE--------------------------ECTTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCT
T ss_pred cCCcccccc--------------------------CCCCcCEEECCCCccCCcC-ccccCCCCEEECCCCCCCCccchhh
Confidence 777655433 1256677777777665332 23467899999999998876 56
Q ss_pred CCCCcccEEECCCCcccccc--cc-ccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEe
Q 020161 203 CGLKCIKKISLQSNRLTSMK--GF-EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLW 278 (330)
Q Consensus 203 ~~~~~L~~L~l~~~~l~~~~--~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~ 278 (330)
..+++|+.|++++|.++..+ .+ ..++.|+.|++++|.+++++....+++|++|++++|+++++ +.+..+++|++|+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEE
Confidence 77899999999999998763 23 46799999999999999998888899999999999999988 5688899999999
Q ss_pred CCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161 279 LNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 279 l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
+++|+++.++. .+..+++|+.|++++|++.+
T Consensus 221 L~~N~l~~l~~----~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 221 LRNNKLVLIEK----ALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CTTSCCCEECT----TCCCCTTCCEEECTTCCCBH
T ss_pred CcCCcccchhh----HhhcCCCCCEEEccCCCccC
Confidence 99999997753 36788999999999999873
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=2.5e-25 Score=202.25 Aligned_cols=300 Identities=21% Similarity=0.246 Sum_probs=215.1
Q ss_pred CcccccccCCCcEEeccCcccccC-----C-CCCCCCCcCEEecCCCCCCChh-hh-hhcCC----CCCEEeCCCCcCCc
Q 020161 16 PDQAVEIDLSNTVLDLTSFQLHDL-----D-SVEFPTNLTELDLTANRLTSLD-SR-ISHLS----NLKKLSLRQNLIDD 83 (330)
Q Consensus 16 ~~~~~~~~~~l~~l~l~~~~l~~~-----~-~~~~~~~L~~L~l~~~~i~~l~-~~-~~~l~----~L~~L~l~~~~~~~ 83 (330)
+...+...+++++|+++++.+... + .+..+++|++|++++|.+.... .. ...++ +|++|++++|.+..
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 455566778899999998887742 2 2334688999999999887432 22 33455 69999999998876
Q ss_pred ccccc-chhhcccCCCcEEEccCCcCcCC--C---C--CCCCCcccEEEccCCCCcCcc-----ccccccCCCcEEEccC
Q 020161 84 AAIEP-ISRWDALAGLEELILRDNKLMKI--P---D--VSIFKKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSK 150 (330)
Q Consensus 84 ~~~~~-~~~~~~~~~L~~L~l~~~~l~~~--~---~--~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~ 150 (330)
..... ...+..+++|++|++++|.++.. . . ....++|++|++++|.+.... .....+++|+.|++++
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 43212 23467788999999999887631 1 1 233567999999999877532 2223368899999999
Q ss_pred CCCCCc--ccc-----cCCCCccEEEcCCccccc------cccccCCCCCcEEECcCCCccccc--------cCCCCccc
Q 020161 151 NEVPKM--EEI-----EHFHDLQILEFGSNRLRV------MENLQNLTNLQELWLGRNRIKVVN--------LCGLKCIK 209 (330)
Q Consensus 151 ~~~~~~--~~~-----~~~~~L~~L~l~~~~~~~------~~~l~~~~~L~~L~l~~~~i~~~~--------~~~~~~L~ 209 (330)
|.+.+. ..+ ...++|++|++++|.++. +..+..+++|++|++++|.+.+.+ +..+++|+
T Consensus 180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence 987652 222 135689999999998864 345667889999999999877641 23578999
Q ss_pred EEECCCCccccc------cccccccccceEEccCCCCCCC------cCC-CCCCCCCEEEcCCCCCCCc------ccccc
Q 020161 210 KISLQSNRLTSM------KGFEECIALEELYLSHNGISKM------EGL-STLVNLHVLDVSSNKLTLV------DDIQN 270 (330)
Q Consensus 210 ~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~-~~~~~L~~L~l~~n~~~~~------~~~~~ 270 (330)
+|++++|.++.. ..+..+++|+.|++++|.+++. ..+ ...++|++|++++|.+++. ..+..
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 999999988874 2355689999999999988653 112 2346999999999999865 34667
Q ss_pred CCCCCeEeCCCCCCCchH-HHHHHHhc-cccccchhhccCCCccccc
Q 020161 271 LSRLEDLWLNDNQIESLE-SIVEAVAG-SRETLTTIYLENNPCKIFK 315 (330)
Q Consensus 271 ~~~L~~L~l~~n~l~~~~-~~~~~~~~-~~~~L~~l~l~~n~~~~~~ 315 (330)
+++|++|++++|.+++.+ ..+...+. .+++|+.|++++|.+++..
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 899999999999988642 12222233 2679999999999987643
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.7e-22 Score=172.00 Aligned_cols=197 Identities=23% Similarity=0.347 Sum_probs=144.0
Q ss_pred CCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc
Q 020161 96 AGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN 173 (330)
Q Consensus 96 ~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (330)
++|++|+++++.++.++. +..+++|++|++++|.+..+.+ ..+..+++|++|++++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA---------------------AAFTGLALLEQLDLSDN 90 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT---------------------TTTTTCTTCCEEECCSC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH---------------------hhcCCccCCCEEeCCCC
Confidence 455555555555554432 4445555555555554443321 24555666666676666
Q ss_pred c-ccc--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc-
Q 020161 174 R-LRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME- 244 (330)
Q Consensus 174 ~-~~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~- 244 (330)
. ++. +..+..+++|++|++++|.+... .+..+++|++|++++|.++..+ .+..+++|+.|++++|.+++++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 442 24466677777778777776655 3667788888888888888774 3778999999999999999875
Q ss_pred -CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161 245 -GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL 316 (330)
Q Consensus 245 -~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 316 (330)
.+..+++|++|++++|.+++. ..+..+++|+.|++++|.++.++ +..+..+++|+.|++++|++.+...
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP---TEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---HHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC---HHHcccCcccCEEeccCCCccCCCC
Confidence 488899999999999999977 66888999999999999999765 4567889999999999999765443
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=5e-24 Score=183.74 Aligned_cols=240 Identities=18% Similarity=0.117 Sum_probs=160.0
Q ss_pred ccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCC--Chhhhhh-------cCCCCCEEeCCCCcCCccccccch
Q 020161 20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT--SLDSRIS-------HLSNLKKLSLRQNLIDDAAIEPIS 90 (330)
Q Consensus 20 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~ 90 (330)
+....++++++++++.+ .+|. ..+..+++|++++|.+. .++..+. ++++|++|++++|.+.+..+..+.
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLG-QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCH-HHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred EccCCCceeEeeccccc-ccHH-HHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34456788888888888 5553 34455999999999986 3555444 799999999999999876544321
Q ss_pred hhcccCCCcEEEccCCcCcCCCC-CCCC-----CcccEEEccCCCCcCccc-cccccCCCcEEEccCCCCCCc----ccc
Q 020161 91 RWDALAGLEELILRDNKLMKIPD-VSIF-----KKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM----EEI 159 (330)
Q Consensus 91 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~-----~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~----~~~ 159 (330)
+..+++|++|++++|.++++|. +..+ ++|++|++++|.+..+++ ....+++|+.|++++|.+.+. ..+
T Consensus 117 -~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 -EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp -SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred -HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 2678999999999999998765 4444 899999999999998874 345589999999999986552 233
Q ss_pred --cCCCCccEEEcCCcccccccc-----ccCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCcccccccccccc
Q 020161 160 --EHFHDLQILEFGSNRLRVMEN-----LQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKGFEECI 228 (330)
Q Consensus 160 --~~~~~L~~L~l~~~~~~~~~~-----l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 228 (330)
..+++|++|++++|.++.... +..+++|++|++++|.+.+. .+..+++|+.|++++|.++..+.... +
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~ 274 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-A 274 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-S
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-C
Confidence 788899999999988863321 24556777777777766553 22233455555555555544332111 4
Q ss_pred ccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161 229 ALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263 (330)
Q Consensus 229 ~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 263 (330)
+|+.|++++|.+++++.+..+++|++|++++|+++
T Consensus 275 ~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred CceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence 44444444444444433444444444444444443
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=8.3e-22 Score=177.94 Aligned_cols=215 Identities=23% Similarity=0.337 Sum_probs=158.8
Q ss_pred cCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161 23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE 99 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 99 (330)
..++++|+++++.+..++. ...+++|++|++++|.+..++. .|.++++|++|++++|.++... ...|..+++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~ 139 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP---NGAFVYLSKLK 139 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC---TTTSCSCSSCC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC---HhHhhccccCc
Confidence 4789999999999998864 4557999999999999998775 5899999999999999998763 33567899999
Q ss_pred EEEccCCcCcCCCC--CCCCCcccEEEccCCC-CcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccc
Q 020161 100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNE-ITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 100 ~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 175 (330)
+|++++|.+..++. +..+++|++|++++|. +..++.. ...+++|+.|++++|.+..+..+..+++|+.|++++|.+
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 99999999998775 7889999999999854 4444432 233677777777777777766667777777777777766
Q ss_pred cc--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCC
Q 020161 176 RV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI 240 (330)
Q Consensus 176 ~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~ 240 (330)
+. +..+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 52 24466666777777777666555 3555566666666666666553 244556666666666543
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=8.2e-22 Score=178.59 Aligned_cols=216 Identities=22% Similarity=0.313 Sum_probs=157.5
Q ss_pred ccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCC
Q 020161 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL 98 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 98 (330)
+..++++|+++++.+.+++. ...+++|++|++++|.+..++. .|.++++|++|++++|.+.... ...|..+++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L 149 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP---SGAFEYLSKL 149 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC---TTTSSSCTTC
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC---hhhhcccCCC
Confidence 35789999999999999854 4557999999999999998764 5899999999999999998763 3346779999
Q ss_pred cEEEccCCcCcCCCC--CCCCCcccEEEccCCC-CcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcc
Q 020161 99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNE-ITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR 174 (330)
Q Consensus 99 ~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 174 (330)
++|++++|.++.++. +..+++|++|++++|. +..++.. ...+++|+.|++++|.+..+..+..+++|+.|++++|.
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence 999999999998775 7889999999999854 4444432 23367777777777777776666667777777777776
Q ss_pred ccc--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCC
Q 020161 175 LRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI 240 (330)
Q Consensus 175 ~~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~ 240 (330)
++. +..+..+++|+.|++++|.+... .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 642 24466666677777766666554 3455566666666666665552 244555666666665543
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=3.7e-22 Score=173.11 Aligned_cols=227 Identities=18% Similarity=0.196 Sum_probs=161.0
Q ss_pred CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEEE
Q 020161 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFD 124 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~ 124 (330)
+++++|++++|.+..+|..+.++++|++|++++|.+.. .+ ..+..+++|++|++++|.++.+|. +..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp---~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LP---DTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC-CC---SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc-hh---HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 67888888888888888777778888888888888773 22 345667888888888888887775 77778888888
Q ss_pred ccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc-ccccccCCCCCcEEECcCCCcccc--c
Q 020161 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVV--N 201 (330)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~--~ 201 (330)
+++|.+.+..+.. +....+ ...+..+++|++|++++|.++ .+..+..+++|++|++++|.+... .
T Consensus 157 L~~n~~~~~~p~~-----~~~~~~-------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 157 IRACPELTELPEP-----LASTDA-------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp EEEETTCCCCCSC-----SEEEC--------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred CCCCCCccccChh-----Hhhccc-------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence 8876544322211 100000 112445666777777777664 334566777777777777776655 4
Q ss_pred cCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC-C-cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCC
Q 020161 202 LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-M-EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLE 275 (330)
Q Consensus 202 ~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~-~-~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~ 275 (330)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+ + ..+..+++|++|++++|++.+. +.+..+++|+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 66677888888888766554 346778889999999887665 3 3577889999999999887655 6788999999
Q ss_pred eEeCCCCCCCchH
Q 020161 276 DLWLNDNQIESLE 288 (330)
Q Consensus 276 ~L~l~~n~l~~~~ 288 (330)
.+++..+.+..++
T Consensus 305 ~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 305 IILVPPHLQAQLD 317 (328)
T ss_dssp EEECCGGGSCC--
T ss_pred EEeCCHHHHHHHh
Confidence 9999988776543
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.5e-21 Score=169.29 Aligned_cols=229 Identities=20% Similarity=0.193 Sum_probs=170.2
Q ss_pred cCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcE
Q 020161 67 HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE 145 (330)
Q Consensus 67 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 145 (330)
..++++.|++++|.+... +..+..+++|++|++++|.++.+|. +..+++|++|++++|.+..++.....+++|+.
T Consensus 79 ~~~~l~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQF----PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCSSC----CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCCchhc----ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 357788888888877743 2234557888888888888877775 67778888888888877766554445666666
Q ss_pred EEccCCCCCC-cccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCcccccc
Q 020161 146 LYVSKNEVPK-MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK 222 (330)
Q Consensus 146 L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~ 222 (330)
|++++|...+ +.. .+... .....+..+++|++|++++|.+... .+..+++|+.|++++|.+++.+
T Consensus 155 L~L~~n~~~~~~p~-----~~~~~-------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 155 LSIRACPELTELPE-----PLAST-------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp EEEEEETTCCCCCS-----CSEEE-------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred EECCCCCCccccCh-----hHhhc-------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc
Confidence 6666654433 100 00011 0112356689999999999998866 5788899999999999999874
Q ss_pred -ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhcc
Q 020161 223 -GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGS 297 (330)
Q Consensus 223 -~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 297 (330)
.+..+++|+.|++++|.+.+. ..+..+++|++|++++|++.+. ..+..+++|++|++++|++.. .++..+.+
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~---~iP~~l~~ 299 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS---RLPSLIAQ 299 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC---CCCGGGGG
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh---hccHHHhh
Confidence 578899999999999988764 4578899999999999987765 568899999999999998763 23456788
Q ss_pred ccccchhhccCCCcccc
Q 020161 298 RETLTTIYLENNPCKIF 314 (330)
Q Consensus 298 ~~~L~~l~l~~n~~~~~ 314 (330)
+++|+.+++..+.+...
T Consensus 300 L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 300 LPANCIILVPPHLQAQL 316 (328)
T ss_dssp SCTTCEEECCGGGSCC-
T ss_pred ccCceEEeCCHHHHHHH
Confidence 99999999887775444
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.9e-22 Score=182.03 Aligned_cols=220 Identities=21% Similarity=0.279 Sum_probs=173.5
Q ss_pred ChhhhhhcC----CCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccc
Q 020161 60 SLDSRISHL----SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG 135 (330)
Q Consensus 60 ~l~~~~~~l----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 135 (330)
.+|..+..+ ++|++|++++|.+.+.. ...|..+++|++|++++|.+++.+++..+++|++|++++|.+..++.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCC---GGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCC---HHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC
Confidence 455554443 47888888888888753 33566788888888888888765557777778887777776654332
Q ss_pred cccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEE
Q 020161 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKIS 212 (330)
Q Consensus 136 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~ 212 (330)
.++|++|++++|.++.... ..+++|+.|++++|.+.+. .+..+++|+.|+
T Consensus 98 --------------------------~~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 98 --------------------------GPSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp --------------------------CTTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred --------------------------CCCcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence 1556677777776654322 3467899999999998876 567789999999
Q ss_pred CCCCcccccc--ccc-cccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchH
Q 020161 213 LQSNRLTSMK--GFE-ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLE 288 (330)
Q Consensus 213 l~~~~l~~~~--~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~ 288 (330)
+++|.+++.+ .+. .++.|+.|++++|.+++++....+++|+.|++++|.++++ +.+..+++|+.|++++|.++.++
T Consensus 151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence 9999998762 333 6899999999999999998888899999999999999988 66889999999999999999765
Q ss_pred HHHHHHhccccccchhhccCCCccc
Q 020161 289 SIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 289 ~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
. .+..+++|+.|++++|++.+
T Consensus 231 ~----~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 231 K----ALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp T----TCCCCTTCCEEECTTCCBCH
T ss_pred h----hhccCCCCCEEEcCCCCCcC
Confidence 3 36788999999999999873
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.3e-20 Score=159.46 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=149.2
Q ss_pred cEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161 27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (330)
Q Consensus 27 ~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (330)
...++.+..+..+|. ..++++++|++++|.++.++. .+.++++|++|++++|.+.... ...+..+++|++|++++
T Consensus 10 ~~~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 10 ITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLILTG 85 (276)
T ss_dssp TEEECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC---TTTTTTCTTCCEEECTT
T ss_pred ceEEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC---HHHccCCcCCCEEECCC
Confidence 456778888888886 567899999999999998876 5889999999999999888753 33567789999999999
Q ss_pred CcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccccccc
Q 020161 106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQ 182 (330)
Q Consensus 106 ~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 182 (330)
|.++.++. +..+++|++|++++|.+..+... ...+++|+.|++++|.+.... .+..+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------l~~~~~ 146 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-------------------LPEYFS 146 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-------------------CCGGGG
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec-------------------Cchhhc
Confidence 99887653 77888888888888887765542 222455555555555444310 123344
Q ss_pred CCCCCcEEECcCCCcccc---ccCCCCccc----EEECCCCcccccc-ccccccccceEEccCCCCCCCcC--CCCCCCC
Q 020161 183 NLTNLQELWLGRNRIKVV---NLCGLKCIK----KISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEG--LSTLVNL 252 (330)
Q Consensus 183 ~~~~L~~L~l~~~~i~~~---~~~~~~~L~----~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~--~~~~~~L 252 (330)
.+++|++|++++|.+... .+..+++++ .+++++|.++..+ ......+|+.|++++|.+++++. +..+++|
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence 455555555555554443 222223333 6777777776653 22334478888888888887643 5778899
Q ss_pred CEEEcCCCCCCC
Q 020161 253 HVLDVSSNKLTL 264 (330)
Q Consensus 253 ~~L~l~~n~~~~ 264 (330)
+.|++++|+++.
T Consensus 227 ~~L~l~~N~~~c 238 (276)
T 2z62_A 227 QKIWLHTNPWDC 238 (276)
T ss_dssp CEEECCSSCBCC
T ss_pred cEEEccCCcccc
Confidence 999999988763
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.8e-22 Score=179.20 Aligned_cols=148 Identities=23% Similarity=0.258 Sum_probs=94.0
Q ss_pred CCccEEEcCCcccc--cc----ccccCCCCCcEEECcCCCcccc--------ccCCCCcccEEECCCCccccc------c
Q 020161 163 HDLQILEFGSNRLR--VM----ENLQNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSM------K 222 (330)
Q Consensus 163 ~~L~~L~l~~~~~~--~~----~~l~~~~~L~~L~l~~~~i~~~--------~~~~~~~L~~L~l~~~~l~~~------~ 222 (330)
++|++|++++|.++ .. ..+..+++|++|++++|.+... .+..+++|+.|++++|.++.. .
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 55666666666553 11 2344556666777766666522 345566677777777766421 2
Q ss_pred ccccccccceEEccCCCCCCC------cCC--CCCCCCCEEEcCCCCCCC-----c-ccc-ccCCCCCeEeCCCCCCCch
Q 020161 223 GFEECIALEELYLSHNGISKM------EGL--STLVNLHVLDVSSNKLTL-----V-DDI-QNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 223 ~~~~~~~L~~l~l~~~~~~~~------~~~--~~~~~L~~L~l~~n~~~~-----~-~~~-~~~~~L~~L~l~~n~l~~~ 287 (330)
.+..+++|+.|++++|.+++. ..+ ..+++|++|++++|.++. + ..+ .++++|+.|++++|+++..
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 356677788888888777653 233 337788888888888887 3 333 5578888888888888866
Q ss_pred HHHHHHHhccccccchhhccCCC
Q 020161 288 ESIVEAVAGSRETLTTIYLENNP 310 (330)
Q Consensus 288 ~~~~~~~~~~~~~L~~l~l~~n~ 310 (330)
+..+..+...+++++.++++.+.
T Consensus 319 ~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 319 DDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp SHHHHHHHHHHHHHTCCEECCCC
T ss_pred hhHHHHHHHHhhhcCcchhhhcc
Confidence 54445555666677666665544
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=7.7e-20 Score=154.24 Aligned_cols=193 Identities=27% Similarity=0.386 Sum_probs=135.2
Q ss_pred ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161 22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 100 (330)
...+.+.++++++.+..+|. ..++++++|++++|.+..++. .|.++++|++|++++|.+... ....|..+++|++
T Consensus 14 c~~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i---~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 14 CNNNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL---PAGIFKELKNLET 89 (270)
T ss_dssp EETTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC---CTTTTSSCTTCCE
T ss_pred eCCCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee---ChhhhcCCCCCCE
Confidence 34567889999999998885 566889999999999998876 588999999999999988865 2334567899999
Q ss_pred EEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccc-cccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccc
Q 020161 101 LILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 101 L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 175 (330)
|++++|.++.++. +..+++|++|++++|.+..+++.. ..+++|+.|++++|.+..+. .+..+++|++|++++|.+
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 9999999988774 677888999999998887766533 33667777777777666532 255566666666666655
Q ss_pred cccc--cccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcc
Q 020161 176 RVME--NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRL 218 (330)
Q Consensus 176 ~~~~--~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l 218 (330)
+... .+..+++|++|++++|.+... .+..+++|+.|++++|.+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 4321 244555555555555555443 233444555555555443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=1.6e-20 Score=159.94 Aligned_cols=195 Identities=22% Similarity=0.239 Sum_probs=157.4
Q ss_pred hhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEE
Q 020161 91 RWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE 169 (330)
Q Consensus 91 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 169 (330)
.+..++++++++++++.++.+|. ...+++++|++++|.+..+.+. ...+++|+.|++++|.+..+.....+++|++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred cccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 45678899999999999999885 2237899999999999877643 344788999999999988876668888999999
Q ss_pred cCCcccccc-ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCC
Q 020161 170 FGSNRLRVM-ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM 243 (330)
Q Consensus 170 l~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~ 243 (330)
+++|.++.+ ..+..+++|++|++++|.+... .+..+++|+.|++++|.++..+ .+..+++|+.|++++|.++.+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 999988643 4467788899999999888776 4677888999999998888774 366788889999999888887
Q ss_pred cC--CCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCc
Q 020161 244 EG--LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 244 ~~--~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~ 286 (330)
+. +..+++|++|++++|+++.+ ..+...++|+.+++++|++..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 53 56788899999999988877 556667788889999888774
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.1e-22 Score=190.41 Aligned_cols=304 Identities=13% Similarity=0.093 Sum_probs=186.4
Q ss_pred cccccccCCCcEEeccCcccccCCC------CCCCCCcCEEecCCCCCC-----ChhhhhhcCCCCCEEeCCCCcCCccc
Q 020161 17 DQAVEIDLSNTVLDLTSFQLHDLDS------VEFPTNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAA 85 (330)
Q Consensus 17 ~~~~~~~~~l~~l~l~~~~l~~~~~------~~~~~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~~ 85 (330)
.......+++++|+++++.+.+... ...+++|++|++++|.+. .++..+.++++|++|++++|.+.+.
T Consensus 157 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l- 235 (592)
T 3ogk_B 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL- 235 (592)
T ss_dssp HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-
T ss_pred HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-
Confidence 3344466899999999998765431 123588999999999886 3444567899999999999877662
Q ss_pred cccchhhcccCCCcEEEccCCcCc----CC-CCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc---c
Q 020161 86 IEPISRWDALAGLEELILRDNKLM----KI-PDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM---E 157 (330)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~~~l~----~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~ 157 (330)
...+..+++|++|+++..... .. ..+..+++|+.+++.++....++.....+++|++|++++|.+.+. .
T Consensus 236 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 236 ---VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp ---HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred ---HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 234567788888888743211 11 124556666677666655444554444566677777766664331 1
Q ss_pred cccCCCCccEEEcCCc-----------------------------------cccc--c-ccccCCCCCcEEECcCCCccc
Q 020161 158 EIEHFHDLQILEFGSN-----------------------------------RLRV--M-ENLQNLTNLQELWLGRNRIKV 199 (330)
Q Consensus 158 ~~~~~~~L~~L~l~~~-----------------------------------~~~~--~-~~l~~~~~L~~L~l~~~~i~~ 199 (330)
.+..+++|+.|+++++ .++. + .....+++|++|++.++.+++
T Consensus 313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 2345555555555421 2210 0 111234455555554444443
Q ss_pred c---ccC-CCCcccEEECC----CCcccccc-------ccccccccceEEccCCC--CCCC--cCC-CCCCCCCEEEcCC
Q 020161 200 V---NLC-GLKCIKKISLQ----SNRLTSMK-------GFEECIALEELYLSHNG--ISKM--EGL-STLVNLHVLDVSS 259 (330)
Q Consensus 200 ~---~~~-~~~~L~~L~l~----~~~l~~~~-------~~~~~~~L~~l~l~~~~--~~~~--~~~-~~~~~L~~L~l~~ 259 (330)
. .+. .+++|+.|++. .+.+++.+ .+..+++|+.|++++|. +++. ..+ ..+++|+.|++++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 3 111 24556666663 34444321 13446677777775433 3321 112 3467899999999
Q ss_pred CCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccccccccccCCCCC
Q 020161 260 NKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKY 327 (330)
Q Consensus 260 n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~p~~ 327 (330)
|++++. ..+..+++|++|++++|++++ ..+......+++|+.|++++|++++.....+ ...+|.+
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l-~~~~p~l 540 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSE--RAIAAAVTKLPSLRYLWVQGYRASMTGQDLM-QMARPYW 540 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBH--HHHHHHHHHCSSCCEEEEESCBCCTTCTTGG-GGCCTTE
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcH--HHHHHHHHhcCccCeeECcCCcCCHHHHHHH-HHhCCCc
Confidence 998864 445788999999999999864 3455666788999999999999776544333 3346654
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=6.4e-20 Score=155.24 Aligned_cols=211 Identities=21% Similarity=0.260 Sum_probs=155.2
Q ss_pred EEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccC
Q 020161 50 ELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSF 127 (330)
Q Consensus 50 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~ 127 (330)
..+..+.++..+|..+. ++|++|++++|.+....+ ..+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCH---hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 45666667777776442 578888888888877532 245667888888888888776654 66677777777777
Q ss_pred CCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc----c
Q 020161 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV----N 201 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~----~ 201 (330)
|.+..+.. ..+..+++|++|++++|.+... ..+..+++|++|++++|.+... .
T Consensus 86 n~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 86 NPIQSLAL---------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp CCCCEECT---------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CccCccCh---------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 76654432 2345556666666666665433 2366778888888888887653 5
Q ss_pred cCCCCcccEEECCCCcccccc--ccccccccc----eEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCCCc--cccccCC
Q 020161 202 LCGLKCIKKISLQSNRLTSMK--GFEECIALE----ELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLS 272 (330)
Q Consensus 202 ~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~----~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~--~~~~~~~ 272 (330)
+..+++|+.|++++|.+++.+ .+..++.++ .+++++|.+++++ ......+|++|++++|+++.+ ..+..++
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccc
Confidence 778899999999999998773 455666666 8999999999874 344455899999999999988 3468899
Q ss_pred CCCeEeCCCCCCCc
Q 020161 273 RLEDLWLNDNQIES 286 (330)
Q Consensus 273 ~L~~L~l~~n~l~~ 286 (330)
+|+.|++++|+++.
T Consensus 225 ~L~~L~l~~N~~~c 238 (276)
T 2z62_A 225 SLQKIWLHTNPWDC 238 (276)
T ss_dssp SCCEEECCSSCBCC
T ss_pred cccEEEccCCcccc
Confidence 99999999999884
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=3.1e-19 Score=151.92 Aligned_cols=193 Identities=21% Similarity=0.234 Sum_probs=160.5
Q ss_pred hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCC
Q 020161 65 ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDT 142 (330)
Q Consensus 65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 142 (330)
+..++++++++++++.++.... .+ .+.++.|++++|.++.++. +..+++|++|++++|.+..++.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~----~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP----DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS----CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred ccccCCccEEECCCCCCCcCCC----CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCc
Confidence 5678899999999998886421 11 3689999999999987653 78899999999999999887764 56789
Q ss_pred CcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCC
Q 020161 143 LKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN 216 (330)
Q Consensus 143 L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~ 216 (330)
|+.|++++|.+..+ ..+..+++|++|++++|.++.. ..+..+++|++|++++|.+... .+..+++|+.|++++|
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998875 4467889999999999998744 4578899999999999988876 3677889999999999
Q ss_pred cccccc--ccccccccceEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCCC
Q 020161 217 RLTSMK--GFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTL 264 (330)
Q Consensus 217 ~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~ 264 (330)
+++..+ .+..+++|+.|++++|.++.++ .+....+|+.+++++|++.-
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 999885 3677899999999999999874 46677799999999998763
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=3.7e-20 Score=156.33 Aligned_cols=206 Identities=21% Similarity=0.321 Sum_probs=119.9
Q ss_pred CCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEcc
Q 020161 70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS 149 (330)
Q Consensus 70 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 149 (330)
++..+++..+.+.+. .....+++|+.|+++++.+..++.+..+++|++|++++|.+..++ ....+++|+.|+++
T Consensus 20 ~l~~l~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA-----VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE-----ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc-----cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence 334455555555442 234567888888888888887777777888888888887776543 12234555555555
Q ss_pred CCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc--c
Q 020161 150 KNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--F 224 (330)
Q Consensus 150 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~ 224 (330)
+|.+..... ..+..+++|++|++++|.+... .+..+++|++|++++|.+++.+. +
T Consensus 94 ~n~l~~~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 153 (272)
T 3rfs_A 94 GNQLQSLPN--------------------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153 (272)
T ss_dssp TSCCCCCCT--------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCccCccCh--------------------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence 555544221 1134444455555555444433 14445556666666655555532 4
Q ss_pred ccccccceEEccCCCCCCCcC--CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccc
Q 020161 225 EECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300 (330)
Q Consensus 225 ~~~~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 300 (330)
..+++|+.|++++|.+++++. +..+++|++|++++|++++. ..+..+++|+.|++++|++.. .|++
T Consensus 154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----------~~~~ 223 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----------TCPG 223 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC----------CTTT
T ss_pred ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc----------cCcH
Confidence 556666666666666666533 45666677777777766665 235666677777777776552 2455
Q ss_pred cchhhccCCCc
Q 020161 301 LTTIYLENNPC 311 (330)
Q Consensus 301 L~~l~l~~n~~ 311 (330)
|+.+++.+|.+
T Consensus 224 l~~l~~~~n~~ 234 (272)
T 3rfs_A 224 IRYLSEWINKH 234 (272)
T ss_dssp THHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66655555543
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.8e-20 Score=157.74 Aligned_cols=170 Identities=23% Similarity=0.401 Sum_probs=92.9
Q ss_pred ccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc
Q 020161 94 ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN 173 (330)
Q Consensus 94 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (330)
.+++|++|++++|.+..++.+..+++|++|++++|.+..+.+ ...+++|+.|++++|.+..+..+..+++|++|++++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC
Confidence 345555555555555555445555555555555555554443 2334455555555555555444555666666666666
Q ss_pred cccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCC
Q 020161 174 RLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNL 252 (330)
Q Consensus 174 ~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L 252 (330)
.++.++.+..+++|+.|++++|.+.+. .+..+++|+.|++++|.+++.+.+..+++|+.|++++|.+++++.+..+++|
T Consensus 123 ~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L 202 (291)
T 1h6t_A 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNL 202 (291)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred cCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCC
Confidence 655555555555666666665555444 3444555555555555555554455555555555555555555555555556
Q ss_pred CEEEcCCCCCCC
Q 020161 253 HVLDVSSNKLTL 264 (330)
Q Consensus 253 ~~L~l~~n~~~~ 264 (330)
+.|++++|+++.
T Consensus 203 ~~L~l~~n~i~~ 214 (291)
T 1h6t_A 203 DVLELFSQECLN 214 (291)
T ss_dssp SEEEEEEEEEEC
T ss_pred CEEECcCCcccC
Confidence 666665555543
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.3e-19 Score=149.09 Aligned_cols=193 Identities=25% Similarity=0.378 Sum_probs=133.9
Q ss_pred CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEE
Q 020161 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVF 123 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L 123 (330)
...+++++++++++.+|..+. ++++.|++++|.+.... ...|..+++|++|++++|.++.++. +..+++|++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLP---SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCC---TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeC---HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 457889999999988886543 67899999998888753 2356678889999999888887775 5678888888
Q ss_pred EccCCCCcCccccc-cccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc--
Q 020161 124 DVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-- 200 (330)
Q Consensus 124 ~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-- 200 (330)
++++|.+..++... ..+++|+.|++++|.+..+. ...+..+++|++|++++|.+...
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP--------------------PRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--------------------TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC--------------------HHHhCcCcCCCEEECCCCcCCccCH
Confidence 88888777655422 22455555555555444421 12244555566666666555544
Q ss_pred -ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCC
Q 020161 201 -NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLT 263 (330)
Q Consensus 201 -~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~ 263 (330)
.+..+++|+.|++++|.++..+ .+..+++|+.|++++|.+++++ .+..+++|+.|++++|++.
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 2455667777777777776663 3667788888888888888764 3677888999999988764
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=158.92 Aligned_cols=224 Identities=18% Similarity=0.206 Sum_probs=106.6
Q ss_pred CCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCC-C-C--CCCCcccEEEccCCCCcCcccc-----ccc
Q 020161 69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIP-D-V--SIFKKLSVFDVSFNEITSSHGL-----SNV 139 (330)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~-~--~~~~~L~~L~l~~~~~~~~~~~-----~~~ 139 (330)
..++.+.+.++.+.......+..+..+++|++|++++|.+.+.. . + ..+++|++|++++|.+...... ...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34556666665554432222222333456777777777666432 2 3 5566777777777766542210 012
Q ss_pred cCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCccccccCCCCcccEEECCCCc
Q 020161 140 TDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNR 217 (330)
Q Consensus 140 ~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~ 217 (330)
+++|+.|++++|.+... ..+..+++|++|++++|.+.....+.. ...+..+++|++|++++|.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------------~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA---------------ALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT---------------TSCTTSSCCCCSCBCCSSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH---------------HHhhhcCCCCCEEECCCCC
Confidence 44555555555554432 234444455555555544321000000 0011234445555555554
Q ss_pred cccccc-----cccccccceEEccCCCCCCC--cCCCCC---CCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCch
Q 020161 218 LTSMKG-----FEECIALEELYLSHNGISKM--EGLSTL---VNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 218 l~~~~~-----~~~~~~L~~l~l~~~~~~~~--~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~ 287 (330)
++..+. +..+++|++|++++|.+++. +.+..+ ++|++|++++|+++.++... .++|++|++++|+++.+
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSC
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCC
Confidence 443321 23445555555555555543 222222 45666666666665442211 25666666666666644
Q ss_pred HHHHHHHhccccccchhhccCCCccc
Q 020161 288 ESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 288 ~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
+. +..+++|+.|++++|++++
T Consensus 288 ~~-----~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 PQ-----PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-----TTSCCCCSCEECSSTTTSC
T ss_pred ch-----hhhCCCccEEECcCCCCCC
Confidence 21 3445666666666666543
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=8.5e-21 Score=177.71 Aligned_cols=287 Identities=14% Similarity=0.034 Sum_probs=185.6
Q ss_pred CCCcEEeccCcc-ccc--CCC-CCCCCCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCcCCccccccchh-hc
Q 020161 24 LSNTVLDLTSFQ-LHD--LDS-VEFPTNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDDAAIEPISR-WD 93 (330)
Q Consensus 24 ~~l~~l~l~~~~-l~~--~~~-~~~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~ 93 (330)
.++++|+++++. +.. ++. ...+++|++|++++|.+.. ++..+..+++|++|++++|.+.+.....+.. +.
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 359999998876 221 111 1246899999999998763 4445678999999999999987443223332 46
Q ss_pred ccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCc----CccccccccCCCcEEEccCCCCCCc-ccccCCCCccE
Q 020161 94 ALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEIT----SSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQI 167 (330)
Q Consensus 94 ~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~ 167 (330)
.+++|++|++++|.+.+++. +..+++|++|+++..... ........+++|+.+.+..+....+ ..+..+++|++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 78999999999999888765 677899999999864322 1122233478899999988654443 34667889999
Q ss_pred EEcCCcccccc---ccccCCCCCcEEECcCCCcccc----ccCCCCcccEEECC--------------------------
Q 020161 168 LEFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQ-------------------------- 214 (330)
Q Consensus 168 L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~-------------------------- 214 (330)
|++++|.++.. ..+..+++|+.|+++ +.+.+. ....+++|++|++.
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 99999886421 224566666666665 222222 12334455555555
Q ss_pred ----------CCccccc--cccc-cccccceEEcc----CCCCCCCc-------CCCCCCCCCEEEcCCCC--CCCc--c
Q 020161 215 ----------SNRLTSM--KGFE-ECIALEELYLS----HNGISKME-------GLSTLVNLHVLDVSSNK--LTLV--D 266 (330)
Q Consensus 215 ----------~~~l~~~--~~~~-~~~~L~~l~l~----~~~~~~~~-------~~~~~~~L~~L~l~~n~--~~~~--~ 266 (330)
.+.+++. ..+. .+++|+.|+++ .+.+++.+ .+..+++|+.|++++|. +++. .
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 3333322 1111 24555555554 33344321 12346677777776543 4433 2
Q ss_pred c-cccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161 267 D-IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 267 ~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
. ...+++|++|++++|++++ ..++..+..|++|+.|++++|++++
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESD--EGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSH--HHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHhCccceEeeccCCCCCH--HHHHHHHhcCcccCeeeccCCCCcH
Confidence 2 2347889999999999885 3456677889999999999999654
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=5.3e-20 Score=156.85 Aligned_cols=187 Identities=20% Similarity=0.302 Sum_probs=155.1
Q ss_pred EEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccc
Q 020161 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME 179 (330)
Q Consensus 100 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 179 (330)
.+.+....+..+.....+++|++|++++|.+..++. ...+++|+.|++++|.+.+...+..+++|++|++++|.++.++
T Consensus 28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG
T ss_pred HHHhcCCCcccccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh
Confidence 344555555555555678889999999998887754 4447889999999999888766888999999999999888777
Q ss_pred cccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcC
Q 020161 180 NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVS 258 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~ 258 (330)
.+..+++|++|++++|.+.+. .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+++++.+..+++|+.|+++
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECC
Confidence 788889999999999988776 5777888999999999888887788888999999999988888668888899999999
Q ss_pred CCCCCCccccccCCCCCeEeCCCCCCCch
Q 020161 259 SNKLTLVDDIQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 259 ~n~~~~~~~~~~~~~L~~L~l~~n~l~~~ 287 (330)
+|.+++++.+..+++|+.|++++|+++..
T Consensus 187 ~N~i~~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 187 KNHISDLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp SSCCCBCGGGTTCTTCSEEEEEEEEEECC
T ss_pred CCcCCCChhhccCCCCCEEECcCCcccCC
Confidence 99988887788888999999999887754
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.6e-19 Score=152.49 Aligned_cols=171 Identities=27% Similarity=0.464 Sum_probs=147.0
Q ss_pred cCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCC
Q 020161 140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN 216 (330)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~ 216 (330)
+++++.|++.++.+..+..+..+++|++|++++|.++.+..+..+++|++|++++|.+... .+..+++|++|++++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 5667777777777777667778888999999988887777888899999999999988877 3688899999999999
Q ss_pred ccccccc--cccccccceEEccCCCCCCCcC--CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHH
Q 020161 217 RLTSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESI 290 (330)
Q Consensus 217 ~l~~~~~--~~~~~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~ 290 (330)
.+++.+. +..+++|+.|++++|.+++++. +..+++|++|++++|++++. ..+..+++|++|++++|+++.++
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-- 197 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-- 197 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC--
Confidence 9998853 7889999999999999998754 78899999999999999988 34788999999999999999765
Q ss_pred HHHHhccccccchhhccCCCccc
Q 020161 291 VEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 291 ~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
+..+..+++|+.|++++|++.+
T Consensus 198 -~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 198 -DGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp -TTTTTTCTTCCEEECCSSCBCC
T ss_pred -HHHHhCCcCCCEEEccCCCccc
Confidence 4557889999999999999654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.6e-19 Score=149.45 Aligned_cols=198 Identities=17% Similarity=0.245 Sum_probs=135.2
Q ss_pred cccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCc-CCccccccchhhcccCCCcEEEccC-CcCcCCC
Q 020161 36 LHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNL-IDDAAIEPISRWDALAGLEELILRD-NKLMKIP 112 (330)
Q Consensus 36 l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~ 112 (330)
+..+|. +++++++|++++|+++.++. .|.++++|++|++++|. +.... ...|..+++|++|++++ |.++.++
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~---~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE---SHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC---TTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC---HhHcCCCcCCcEEECCCCCCeeEcC
Confidence 777776 77799999999999998877 58889999999999996 77652 33566788999999987 8888776
Q ss_pred C--CCCCCcccEEEccCCCCcCccccccccCCCc---EEEccCC-CCCCcccccCCCCccEEEcCCccccccccccCCCC
Q 020161 113 D--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK---ELYVSKN-EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTN 186 (330)
Q Consensus 113 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 186 (330)
. +..+++|++|++++|.+..++. ...+.+|+ .|++++| .+..+. ...+..+++
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~--------------------~~~~~~l~~ 156 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP--------------------VNAFQGLCN 156 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC--------------------TTTTTTTBS
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcC--------------------cccccchhc
Confidence 4 5677888888888887766554 22233343 4444444 333321 112445556
Q ss_pred Cc-EEECcCCCcccc---ccCCCCcccEEECCCCc-ccccc--ccccc-cccceEEccCCCCCCCcCCCCCCCCCEEEcC
Q 020161 187 LQ-ELWLGRNRIKVV---NLCGLKCIKKISLQSNR-LTSMK--GFEEC-IALEELYLSHNGISKMEGLSTLVNLHVLDVS 258 (330)
Q Consensus 187 L~-~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~-l~~~~--~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~ 258 (330)
|+ +|++++|.+... .+.. ++|+.|++++|. ++..+ .+..+ ++|+.|++++|.++.++.. .+++|+.|.++
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred ceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 66 666666655544 2222 567777777773 66653 35666 7888888888888877643 67788888887
Q ss_pred CCC
Q 020161 259 SNK 261 (330)
Q Consensus 259 ~n~ 261 (330)
++.
T Consensus 235 ~~~ 237 (239)
T 2xwt_C 235 NTW 237 (239)
T ss_dssp TC-
T ss_pred Ccc
Confidence 763
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=2.3e-20 Score=164.19 Aligned_cols=237 Identities=15% Similarity=0.133 Sum_probs=142.2
Q ss_pred EecCCCCCCChhhhhhc-CCCCCEEeCCCCcCCccccccc-hhhcccC-CCcEEEccCCcCcCCCC--CCCC-----Ccc
Q 020161 51 LDLTANRLTSLDSRISH-LSNLKKLSLRQNLIDDAAIEPI-SRWDALA-GLEELILRDNKLMKIPD--VSIF-----KKL 120 (330)
Q Consensus 51 L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~-~L~~L~l~~~~l~~~~~--~~~~-----~~L 120 (330)
+.++.|.++...+.+.. .++|++|++++|.+.+..+..+ ..+..++ +|++|++++|.++.... +..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 44556666644333333 3346666666666655432111 2344455 56666666666654321 2221 566
Q ss_pred cEEEccCCCCcCcccc-----cccc-CCCcEEEccCCCCCCcc------cccC-CCCccEEEcCCcccccc------ccc
Q 020161 121 SVFDVSFNEITSSHGL-----SNVT-DTLKELYVSKNEVPKME------EIEH-FHDLQILEFGSNRLRVM------ENL 181 (330)
Q Consensus 121 ~~L~l~~~~~~~~~~~-----~~~~-~~L~~L~l~~~~~~~~~------~~~~-~~~L~~L~l~~~~~~~~------~~l 181 (330)
++|++++|.+...... ...+ ++|+.|++++|.+.... .+.. .++|++|++++|.++.. ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 6666666665543221 1112 56777777777665521 1334 35888899988887521 223
Q ss_pred cCCC-CCcEEECcCCCccccc-------cCCC-CcccEEECCCCccccc------ccccc-ccccceEEccCCCCCCCc-
Q 020161 182 QNLT-NLQELWLGRNRIKVVN-------LCGL-KCIKKISLQSNRLTSM------KGFEE-CIALEELYLSHNGISKME- 244 (330)
Q Consensus 182 ~~~~-~L~~L~l~~~~i~~~~-------~~~~-~~L~~L~l~~~~l~~~------~~~~~-~~~L~~l~l~~~~~~~~~- 244 (330)
...+ +|++|++++|.+.+.. +... ++|+.|++++|.++.. ..+.. +++|+.|++++|.+++..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 8888888888876552 2334 4788888888888763 12333 457888888888887642
Q ss_pred -----CCCCCCCCCEEEcCCCCCCCc---------cccccCCCCCeEeCCCCCCCch
Q 020161 245 -----GLSTLVNLHVLDVSSNKLTLV---------DDIQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 245 -----~~~~~~~L~~L~l~~n~~~~~---------~~~~~~~~L~~L~l~~n~l~~~ 287 (330)
.+..+++|++|++++|.+..+ ..+..+++|++|++++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 356677888888888874433 2455667788888888887754
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=6e-19 Score=151.82 Aligned_cols=220 Identities=20% Similarity=0.153 Sum_probs=147.8
Q ss_pred CCcCEEecCCCCCCC--hhh--hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCC-C-----CCC
Q 020161 46 TNLTELDLTANRLTS--LDS--RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI-P-----DVS 115 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~--l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~-----~~~ 115 (330)
..++.+.+.++.+.. +.. .+..+++|++|++++|.+.+..+..+.. ..+++|++|++++|.++.. + .+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-ATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh-ccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 357888998888762 222 2345678999999999998875443211 5789999999999998852 2 145
Q ss_pred CCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc------ccccCCCCccEEEcCCcccccccc-----ccC
Q 020161 116 IFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM------EEIEHFHDLQILEFGSNRLRVMEN-----LQN 183 (330)
Q Consensus 116 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~-----l~~ 183 (330)
.+++|++|++++|.+...++. ...+++|+.|++++|.+.+. ..+..+++|++|++++|.++.++. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 689999999999999887754 34589999999999986541 123566777777777777654322 245
Q ss_pred CCCCcEEECcCCCccccc---cCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCC
Q 020161 184 LTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260 (330)
Q Consensus 184 ~~~L~~L~l~~~~i~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n 260 (330)
+++|++|++++|.+.+.. +..+ ..+++|+.|++++|.++.++... .++|++|++++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~-------------------~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N 282 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRC-------------------MWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSN 282 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSC-------------------CCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhc-------------------cCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCC
Confidence 556666666666554431 1111 12256666666666666554322 257777777777
Q ss_pred CCCCccccccCCCCCeEeCCCCCCCc
Q 020161 261 KLTLVDDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 261 ~~~~~~~~~~~~~L~~L~l~~n~l~~ 286 (330)
++++++.+..+++|+.|++++|++++
T Consensus 283 ~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 283 RLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred cCCCCchhhhCCCccEEECcCCCCCC
Confidence 77776556667777777777777764
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=6.1e-20 Score=161.46 Aligned_cols=237 Identities=17% Similarity=0.239 Sum_probs=161.8
Q ss_pred EeccCcccccCC-C-CCCCCCcCEEecCCCCCCChh-----hhhhcCC-CCCEEeCCCCcCCccccccchh-hccc-CCC
Q 020161 29 LDLTSFQLHDLD-S-VEFPTNLTELDLTANRLTSLD-----SRISHLS-NLKKLSLRQNLIDDAAIEPISR-WDAL-AGL 98 (330)
Q Consensus 29 l~l~~~~l~~~~-~-~~~~~~L~~L~l~~~~i~~l~-----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~-~~~~-~~L 98 (330)
.+++.+.+++.. . ...+++|++|++++|.+...+ ..+.+++ +|++|++++|.+.+..+..+.. +... ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 345555555432 1 234556888888888877554 3466777 7888888888877764333322 1222 788
Q ss_pred cEEEccCCcCcCCCC------CCCC-CcccEEEccCCCCcCccccc-----cc-cCCCcEEEccCCCCCCc------ccc
Q 020161 99 EELILRDNKLMKIPD------VSIF-KKLSVFDVSFNEITSSHGLS-----NV-TDTLKELYVSKNEVPKM------EEI 159 (330)
Q Consensus 99 ~~L~l~~~~l~~~~~------~~~~-~~L~~L~l~~~~~~~~~~~~-----~~-~~~L~~L~l~~~~~~~~------~~~ 159 (330)
++|++++|.++..+. +..+ ++|++|++++|.+....... .. +.+|+.|++++|.+... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 888888888775432 2333 67888888888876544311 11 35788888888887752 223
Q ss_pred cCCC-CccEEEcCCcccccc------ccccCC-CCCcEEECcCCCcccc-------ccCC-CCcccEEECCCCcccccc-
Q 020161 160 EHFH-DLQILEFGSNRLRVM------ENLQNL-TNLQELWLGRNRIKVV-------NLCG-LKCIKKISLQSNRLTSMK- 222 (330)
Q Consensus 160 ~~~~-~L~~L~l~~~~~~~~------~~l~~~-~~L~~L~l~~~~i~~~-------~~~~-~~~L~~L~l~~~~l~~~~- 222 (330)
...+ +|++|++++|.++.. ..+..+ ++|++|++++|.+.+. .+.. .++|+.|++++|.++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 899999999888532 234455 4899999999988773 2333 458999999999888763
Q ss_pred -----ccccccccceEEccCCCCCCC---------cCCCCCCCCCEEEcCCCCCCCc
Q 020161 223 -----GFEECIALEELYLSHNGISKM---------EGLSTLVNLHVLDVSSNKLTLV 265 (330)
Q Consensus 223 -----~~~~~~~L~~l~l~~~~~~~~---------~~~~~~~~L~~L~l~~n~~~~~ 265 (330)
.+..++.|+.|++++|.+.++ ..+..+++|+.|++++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 246778899999999985543 3577888999999999998765
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=6.3e-19 Score=164.12 Aligned_cols=188 Identities=21% Similarity=0.304 Sum_probs=95.7
Q ss_pred CcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEcc
Q 020161 47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVS 126 (330)
Q Consensus 47 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~ 126 (330)
.+..+.++.+.+..+.. +..+++|+.|++++|.+... ..+..+++|+.|+|++|.+..++++..+++|++|+++
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCC-----TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCC-----hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECc
Confidence 34445555555554432 45566666667766666543 2345566666666666666665555566666666666
Q ss_pred CCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCC
Q 020161 127 FNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL 205 (330)
Q Consensus 127 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~ 205 (330)
+|.+..++. ...+++|+.|++++|.+..+..+..+++|+.|++++|.++.+..+..+++|+.|++++|.+.+. ++..+
T Consensus 96 ~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l 174 (605)
T 1m9s_A 96 ENKIKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 174 (605)
T ss_dssp SSCCCCCTT-STTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTC
T ss_pred CCCCCCChh-hccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccC
Confidence 666555432 2224455555555555544444444455555555555444334444444444444444444333 33344
Q ss_pred CcccEEECCCCccccccccccccccceEEccCCCCC
Q 020161 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS 241 (330)
Q Consensus 206 ~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~ 241 (330)
++|+.|++++|.++..+.+..+++|+.|++++|.+.
T Consensus 175 ~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp TTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence 444444444444444433444444444444444433
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1e-18 Score=144.67 Aligned_cols=192 Identities=16% Similarity=0.187 Sum_probs=148.0
Q ss_pred ccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCC-CCChhh-hhhcCCCCCEEeCCC-CcCCccccccchhhcccC
Q 020161 22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANR-LTSLDS-RISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALA 96 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-i~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~ 96 (330)
...++++|+++++.+.+++. ...+++|++|++++|. ++.++. .|.++++|++|++++ |.+.... ...|..++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~---~~~f~~l~ 105 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID---PDALKELP 105 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC---TTSEECCT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC---HHHhCCCC
Confidence 45689999999999999876 3457999999999997 988887 588999999999998 8888763 34567899
Q ss_pred CCcEEEccCCcCcCCCCCCCCCccc---EEEccCC-CCcCcccc-ccccCCCc-EEEccCCCCCCcc-cccCCCCccEEE
Q 020161 97 GLEELILRDNKLMKIPDVSIFKKLS---VFDVSFN-EITSSHGL-SNVTDTLK-ELYVSKNEVPKME-EIEHFHDLQILE 169 (330)
Q Consensus 97 ~L~~L~l~~~~l~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~-~~~~~~~L~~L~ 169 (330)
+|++|++++|.++.+|.+..+++|+ +|++++| .+..++.. ...+++|+ .|++++|.+..+. .....++|+.|+
T Consensus 106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185 (239)
T ss_dssp TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEE
T ss_pred CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEE
Confidence 9999999999999999888888888 9999999 88887764 33478888 9999888877642 222226778888
Q ss_pred cCCcc-cccc--ccccCC-CCCcEEECcCCCccccccCCCCcccEEECCCC
Q 020161 170 FGSNR-LRVM--ENLQNL-TNLQELWLGRNRIKVVNLCGLKCIKKISLQSN 216 (330)
Q Consensus 170 l~~~~-~~~~--~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~ 216 (330)
+++|. ++.+ ..+..+ ++|+.|++++|.+...+...+++++.|.+.++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 88774 6532 335566 67777777777666655445666666666543
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=5.9e-18 Score=141.08 Aligned_cols=170 Identities=24% Similarity=0.336 Sum_probs=128.2
Q ss_pred CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161 24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 102 (330)
.+.++++++++.+..+|. ..++++++|++++|.+..++. .+.++++|++|++++|.+.+.. ...+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS---AGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC---TTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC---HhHhccCCcCCEEE
Confidence 456789999999999886 566899999999999998766 5889999999999999998863 33466789999999
Q ss_pred ccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccc-cccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccccc
Q 020161 103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRV 177 (330)
Q Consensus 103 l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~ 177 (330)
+++|.++.++. +..+++|++|++++|.+..++... ..+++|+.|++++|.+..+. .+..+++|++|++++|.++.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999998774 678899999999999888776543 33677777777777766642 35666666666666666643
Q ss_pred c--ccccCCCCCcEEECcCCCc
Q 020161 178 M--ENLQNLTNLQELWLGRNRI 197 (330)
Q Consensus 178 ~--~~l~~~~~L~~L~l~~~~i 197 (330)
. ..+..+++|+.|++++|.+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCB
T ss_pred cCHHHHhCCCCCCEEEeeCCce
Confidence 2 2345555566666655554
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=5.7e-19 Score=153.67 Aligned_cols=214 Identities=15% Similarity=0.172 Sum_probs=129.7
Q ss_pred CCCcEEEccCCcCcCCC-CCCCCCcccEEEccCCCCcC--ccccccccCCCcEEEccCCCCCC--cccccCCCCccEEEc
Q 020161 96 AGLEELILRDNKLMKIP-DVSIFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEF 170 (330)
Q Consensus 96 ~~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l 170 (330)
+.++.++++++.+...+ .+..+++|++|++++|.+.. ++.....+++|+.|++++|.+.+ +..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 34444444444444322 23344455555555554432 22223334555555555555443 234556777777777
Q ss_pred CCc-ccc---ccccccCCCCCcEEECcCC-Ccccc----ccCCCC-cccEEECCCCc--cccc---cccccccccceEEc
Q 020161 171 GSN-RLR---VMENLQNLTNLQELWLGRN-RIKVV----NLCGLK-CIKKISLQSNR--LTSM---KGFEECIALEELYL 235 (330)
Q Consensus 171 ~~~-~~~---~~~~l~~~~~L~~L~l~~~-~i~~~----~~~~~~-~L~~L~l~~~~--l~~~---~~~~~~~~L~~l~l 235 (330)
++| .++ ....+..+++|++|++++| .+.+. .+..++ +|++|++++|. ++.. ..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 777 454 2233566777888888877 66653 355667 88888888873 4322 23457888899999
Q ss_pred cCCC-CCC--CcCCCCCCCCCEEEcCCCC-CCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161 236 SHNG-ISK--MEGLSTLVNLHVLDVSSNK-LTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309 (330)
Q Consensus 236 ~~~~-~~~--~~~~~~~~~L~~L~l~~n~-~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n 309 (330)
++|. +++ ++.+..+++|++|++++|. ++.. ..+..+++|+.|++++| +++ ..+..+. ..++.|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~---~~l~~L~l~~n 303 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLK---EALPHLQINCS 303 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHH---HHSTTSEESCC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHH---hhCcceEEecc
Confidence 8888 543 4567778899999999985 4333 35778899999999998 553 2223332 23556668888
Q ss_pred Cccccc
Q 020161 310 PCKIFK 315 (330)
Q Consensus 310 ~~~~~~ 315 (330)
.+++..
T Consensus 304 ~l~~~~ 309 (336)
T 2ast_B 304 HFTTIA 309 (336)
T ss_dssp CSCCTT
T ss_pred cCcccc
Confidence 877654
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=3.2e-20 Score=164.75 Aligned_cols=221 Identities=19% Similarity=0.257 Sum_probs=141.1
Q ss_pred CCCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCcCCcc---ccccc----hhhcccCCCcEEEccCCcCcC--
Q 020161 45 PTNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDDA---AIEPI----SRWDALAGLEELILRDNKLMK-- 110 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~---~~~~~----~~~~~~~~L~~L~l~~~~l~~-- 110 (330)
+++|++|++++|.+.. ++..+..+++|++|++++|.+... .|..+ ..+..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4567777777776663 222355667777777766543321 11111 112456677777777776664
Q ss_pred ---CCC-CCCCCcccEEEccCCCCcCcccc-----cccc---------CCCcEEEccCCCCCC--c----ccccCCCCcc
Q 020161 111 ---IPD-VSIFKKLSVFDVSFNEITSSHGL-----SNVT---------DTLKELYVSKNEVPK--M----EEIEHFHDLQ 166 (330)
Q Consensus 111 ---~~~-~~~~~~L~~L~l~~~~~~~~~~~-----~~~~---------~~L~~L~l~~~~~~~--~----~~~~~~~~L~ 166 (330)
++. +..+++|++|++++|.+...... ...+ ++|+.|++++|.+.. + ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 222 45566777777777766432111 1112 677777777777753 1 2355677888
Q ss_pred EEEcCCcccc------ccc-cccCCCCCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc------ccc--
Q 020161 167 ILEFGSNRLR------VME-NLQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGF-- 224 (330)
Q Consensus 167 ~L~l~~~~~~------~~~-~l~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~-- 224 (330)
+|++++|.++ ... .+..+++|+.|++++|.+.+. .+..+++|+.|++++|.++.. ..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 8888888775 223 567778888888888887521 466778888888888888765 223
Q ss_pred ccccccceEEccCCCCCC-----Cc-CC-CCCCCCCEEEcCCCCCCCc
Q 020161 225 EECIALEELYLSHNGISK-----ME-GL-STLVNLHVLDVSSNKLTLV 265 (330)
Q Consensus 225 ~~~~~L~~l~l~~~~~~~-----~~-~~-~~~~~L~~L~l~~n~~~~~ 265 (330)
..+++|+.|++++|.+++ ++ .+ ..+++|+.|++++|++++.
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 237888999999988887 43 23 4468899999999988866
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=9.7e-20 Score=152.85 Aligned_cols=170 Identities=19% Similarity=0.312 Sum_probs=138.7
Q ss_pred CCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCC
Q 020161 116 IFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195 (330)
Q Consensus 116 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~ 195 (330)
.+.++..+++.++.+..+.. ...+++|+.|++++|.+..++.+..+++|+.|++++|.++....+..+++|++|++++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEEC-HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCcccccc-hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 45667777888888877663 34478899999999988887778888899999999988876655888888999999998
Q ss_pred Ccccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCC
Q 020161 196 RIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL 274 (330)
Q Consensus 196 ~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L 274 (330)
.+.+. .+.. ++|+.|++++|.+++.+.+..+++|+.|++++|.+++++.+..+++|+.|++++|++++...+..+++|
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L 174 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKV 174 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred ccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence 88776 3333 788888888888888877888888888888888888888788888888888888888888777888888
Q ss_pred CeEeCCCCCCCch
Q 020161 275 EDLWLNDNQIESL 287 (330)
Q Consensus 275 ~~L~l~~n~l~~~ 287 (330)
+.|++++|+++..
T Consensus 175 ~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 175 NWIDLTGQKCVNE 187 (263)
T ss_dssp CEEEEEEEEEECC
T ss_pred CEEeCCCCcccCC
Confidence 8888888887754
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=2.5e-18 Score=160.12 Aligned_cols=169 Identities=25% Similarity=0.391 Sum_probs=77.3
Q ss_pred CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEE
Q 020161 45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFD 124 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~ 124 (330)
+++|+.|++++|.+..++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..++.+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh-----hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 3444444444444444432 4444444444444444444211 334444444444444444444444444444454
Q ss_pred ccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccC
Q 020161 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLC 203 (330)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~ 203 (330)
+++|.+..++. ...+++|+.|++++|.+..+..+..+++|+.|++++|.+.....+..+++|+.|++++|.+.+. .+.
T Consensus 116 Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~ 194 (605)
T 1m9s_A 116 LEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 194 (605)
T ss_dssp CTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGT
T ss_pred ecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHc
Confidence 44444444322 2223444455554444444444444445555555544444332344444555555555444443 344
Q ss_pred CCCcccEEECCCCcccc
Q 020161 204 GLKCIKKISLQSNRLTS 220 (330)
Q Consensus 204 ~~~~L~~L~l~~~~l~~ 220 (330)
.+++|+.|++++|.++.
T Consensus 195 ~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCTTCSEEECCSEEEEC
T ss_pred cCCCCCEEEccCCcCcC
Confidence 44445555555444443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=4.1e-18 Score=149.09 Aligned_cols=232 Identities=20% Similarity=0.249 Sum_probs=172.2
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE-EE
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE-LI 102 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~-L~ 102 (330)
+.+++++++++++.+|. ..++++++|++++|+|+.++.. |.++++|++|++++|.+.+..+ ...|..++++.+ +.
T Consensus 10 ~~~~v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~--~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 10 SNRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIRI 86 (350)
T ss_dssp ETTEEEEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC--TTSBCSCTTCCEEEE
T ss_pred eCCEEEecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC--hhHhhcchhhhhhhc
Confidence 34678999999999986 5678999999999999999874 8999999999999999876432 345677888776 45
Q ss_pred ccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCC-CCCCc--ccccCC-CCccEEEcCCccc
Q 020161 103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKN-EVPKM--EEIEHF-HDLQILEFGSNRL 175 (330)
Q Consensus 103 l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~-~~~~~--~~~~~~-~~L~~L~l~~~~~ 175 (330)
+.+|.++.+++ +..+++|++|++++|.+..++..... ..++..+++.++ .+..+ ..+..+ ..++.|++++|.+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 66788988764 78899999999999999887765443 566777887654 44443 234444 3578888888888
Q ss_pred ccc-ccccCCCCCcEEECcC-CCcccc---ccCCCCcccEEECCCCccccccccccccccceEEccC-CCCCCCcCCCCC
Q 020161 176 RVM-ENLQNLTNLQELWLGR-NRIKVV---NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSH-NGISKMEGLSTL 249 (330)
Q Consensus 176 ~~~-~~l~~~~~L~~L~l~~-~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~ 249 (330)
+.+ .......+++++++.+ |.+... .|..+++|+.|++++|+++..+. ..+..|+.|.+.+ +.+..++.+..+
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l 245 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKL 245 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTC
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchhC
Confidence 643 4444566788888864 556555 46777888888888888887754 2355666666544 346667778888
Q ss_pred CCCCEEEcCCC
Q 020161 250 VNLHVLDVSSN 260 (330)
Q Consensus 250 ~~L~~L~l~~n 260 (330)
++|+.++++++
T Consensus 246 ~~L~~l~l~~~ 256 (350)
T 4ay9_X 246 VALMEASLTYP 256 (350)
T ss_dssp CSCCEEECSCH
T ss_pred cChhhCcCCCC
Confidence 88888888653
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=3.4e-20 Score=173.62 Aligned_cols=302 Identities=17% Similarity=0.160 Sum_probs=162.7
Q ss_pred ccccCCCcEEeccCcccccCC--CCC-CCCCcCEEecCCC-CCCC--hhhhhhcCCCCCEEeCCCCcCCccccccchhh-
Q 020161 20 VEIDLSNTVLDLTSFQLHDLD--SVE-FPTNLTELDLTAN-RLTS--LDSRISHLSNLKKLSLRQNLIDDAAIEPISRW- 92 (330)
Q Consensus 20 ~~~~~~l~~l~l~~~~l~~~~--~~~-~~~~L~~L~l~~~-~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~- 92 (330)
....+++++|+++++.+.+.. .+. .+++|++|++++| .+.. ++..+.++++|++|++++|.+++..+..+..+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 345667888888887765432 121 3578888888888 5553 44545678888888888888776544444433
Q ss_pred cccCCCcEEEccCCcCcCCC-----C-CCCCCcccEEEccCCC-CcCcc-------------------------------
Q 020161 93 DALAGLEELILRDNKLMKIP-----D-VSIFKKLSVFDVSFNE-ITSSH------------------------------- 134 (330)
Q Consensus 93 ~~~~~L~~L~l~~~~l~~~~-----~-~~~~~~L~~L~l~~~~-~~~~~------------------------------- 134 (330)
..+++|++|++++|. ..++ . +..+++|++|++++|. +..++
T Consensus 181 ~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 356778888887775 2121 1 2335666677666651 11100
Q ss_pred -----------------------ccccccCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCcccc--cccc-ccCCC
Q 020161 135 -----------------------GLSNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLR--VMEN-LQNLT 185 (330)
Q Consensus 135 -----------------------~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~--~~~~-l~~~~ 185 (330)
.....+++|+.|++++|.+... ..+..+++|+.|+++++ +. .+.. ...++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 0011246667777766664431 11345566666666655 21 1111 12344
Q ss_pred CCcEEECc---------CCCccccc----cCCCCcccEEECCCCcccccc--c---------------------------
Q 020161 186 NLQELWLG---------RNRIKVVN----LCGLKCIKKISLQSNRLTSMK--G--------------------------- 223 (330)
Q Consensus 186 ~L~~L~l~---------~~~i~~~~----~~~~~~L~~L~l~~~~l~~~~--~--------------------------- 223 (330)
+|++|++. .+.+++.. ...+++|+.|.+.++.++... .
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 55555552 12222210 011333444433333333220 1
Q ss_pred ---------cccccccceEEccCCCCCCC--cCCC-CCCCCCEEEcCCCCCCCc--ccc-ccCCCCCeEeCCCCCCCchH
Q 020161 224 ---------FEECIALEELYLSHNGISKM--EGLS-TLVNLHVLDVSSNKLTLV--DDI-QNLSRLEDLWLNDNQIESLE 288 (330)
Q Consensus 224 ---------~~~~~~L~~l~l~~~~~~~~--~~~~-~~~~L~~L~l~~n~~~~~--~~~-~~~~~L~~L~l~~n~l~~~~ 288 (330)
+..+++|+.|++++ .+++. +.+. .+++|+.|++++|.+++. ..+ ..+++|++|++++|++++
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~-- 495 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD-- 495 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH--
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH--
Confidence 22344444444433 22221 1122 256788888888877654 222 567888888888888853
Q ss_pred HHHHHHhccccccchhhccCCCccccccccccccCCCCC
Q 020161 289 SIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKY 327 (330)
Q Consensus 289 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~p~~ 327 (330)
..+......+++|+.|++++|+.+... ......++|++
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~lp~l 533 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSVSFGA-CKLLGQKMPKL 533 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCCBHHH-HHHHHHHCTTE
T ss_pred HHHHHHHHhCCCCCEEeeeCCCCCHHH-HHHHHHhCCCC
Confidence 233445667888888888888874322 22233445655
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=5.4e-21 Score=179.08 Aligned_cols=289 Identities=16% Similarity=0.201 Sum_probs=169.1
Q ss_pred ccccccCCCcEEeccCcccccCC-----C-CCCCCCcCEEecCCCC--CC--ChhhhhhcCCCCCEEeCCCCcC-Cc---
Q 020161 18 QAVEIDLSNTVLDLTSFQLHDLD-----S-VEFPTNLTELDLTANR--LT--SLDSRISHLSNLKKLSLRQNLI-DD--- 83 (330)
Q Consensus 18 ~~~~~~~~l~~l~l~~~~l~~~~-----~-~~~~~~L~~L~l~~~~--i~--~l~~~~~~l~~L~~L~l~~~~~-~~--- 83 (330)
......+++++|+++++.+.+.. . ...+++|++|++++|. +. .+...+.++++|++|++++|.. .+
T Consensus 150 ~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~ 229 (594)
T 2p1m_B 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT 229 (594)
T ss_dssp HHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH
T ss_pred HHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH
Confidence 34445678888888887765532 1 1245678888888775 22 2222345577777777777621 11
Q ss_pred ----------------------------------------------cccccchh-hcccCCCcEEEccCCcCcC--CCC-
Q 020161 84 ----------------------------------------------AAIEPISR-WDALAGLEELILRDNKLMK--IPD- 113 (330)
Q Consensus 84 ----------------------------------------------~~~~~~~~-~~~~~~L~~L~l~~~~l~~--~~~- 113 (330)
.....+.. +..+++|++|++++|.++. +..
T Consensus 230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~ 309 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309 (594)
T ss_dssp HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence 00000111 1134555555555555432 111
Q ss_pred CCCCCcccEEEccCCCCcC--ccccccccCCCcEEEccCC---------CCCC--cccc-cCCCCccEEEcCCccccc--
Q 020161 114 VSIFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKN---------EVPK--MEEI-EHFHDLQILEFGSNRLRV-- 177 (330)
Q Consensus 114 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~---------~~~~--~~~~-~~~~~L~~L~l~~~~~~~-- 177 (330)
+..+++|++|++.+| +.. +......+++|+.|++.++ .++. +..+ ..+++|+.|.+..+.++.
T Consensus 310 ~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~ 388 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388 (594)
T ss_dssp HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred HhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence 234555666655555 211 1111122566666666331 2221 1111 235667777666555542
Q ss_pred cccc-cCCCCCcEEECc--C----CCcccc--------ccCCCCcccEEECCCCccccc--cccc-cccccceEEccCCC
Q 020161 178 MENL-QNLTNLQELWLG--R----NRIKVV--------NLCGLKCIKKISLQSNRLTSM--KGFE-ECIALEELYLSHNG 239 (330)
Q Consensus 178 ~~~l-~~~~~L~~L~l~--~----~~i~~~--------~~~~~~~L~~L~l~~~~l~~~--~~~~-~~~~L~~l~l~~~~ 239 (330)
+..+ ..+++|+.|+++ + +.++.. .+..+++|+.|++++ .++.. ..+. .+++|+.|++++|.
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence 2223 257888999888 3 445421 145678899999976 55443 2233 37899999999999
Q ss_pred CCCC--cCC-CCCCCCCEEEcCCCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161 240 ISKM--EGL-STLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (330)
Q Consensus 240 ~~~~--~~~-~~~~~L~~L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 310 (330)
+++. ..+ ..+++|++|++++|.+++. .....+++|++|++++|+++. ..+..+...+|+|+...+..+.
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF--GACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH--HHHHHHHHHCTTEEEEEECSSS
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH--HHHHHHHHhCCCCEEEEecCCC
Confidence 8753 333 5689999999999999654 244568999999999999853 3445555778999877777664
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=2.8e-19 Score=155.61 Aligned_cols=234 Identities=15% Similarity=0.151 Sum_probs=158.1
Q ss_pred CCcCEEecCCCCCCChhhhhhcC--CCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC--CCC-CCCCCcc
Q 020161 46 TNLTELDLTANRLTSLDSRISHL--SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK--IPD-VSIFKKL 120 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~-~~~~~~L 120 (330)
..++.++++++.+. +..+..+ ++++.++++++.+.+..+ .+..+++|++|++++|.++. ++. +..+++|
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLA----EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCC----SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccch----hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 34677777777666 3445555 778888888877766432 23456778888888777653 443 5667788
Q ss_pred cEEEccCCCCcCcc-ccccccCCCcEEEccCC-CCCC--c-ccccCCCCccEEEcCCc-ccc---ccccccCCC-CCcEE
Q 020161 121 SVFDVSFNEITSSH-GLSNVTDTLKELYVSKN-EVPK--M-EEIEHFHDLQILEFGSN-RLR---VMENLQNLT-NLQEL 190 (330)
Q Consensus 121 ~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~--~-~~~~~~~~L~~L~l~~~-~~~---~~~~l~~~~-~L~~L 190 (330)
++|++++|.+.... .....+++|+.|++++| .+.+ + ..+..+++|++|++++| .++ ....+..++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 88888887765322 22233677888888887 4553 2 23567788888888888 665 234466778 88888
Q ss_pred ECcCC--Ccccc----ccCCCCcccEEECCCCc-cccc--cccccccccceEEccCCC-CCC--CcCCCCCCCCCEEEcC
Q 020161 191 WLGRN--RIKVV----NLCGLKCIKKISLQSNR-LTSM--KGFEECIALEELYLSHNG-ISK--MEGLSTLVNLHVLDVS 258 (330)
Q Consensus 191 ~l~~~--~i~~~----~~~~~~~L~~L~l~~~~-l~~~--~~~~~~~~L~~l~l~~~~-~~~--~~~~~~~~~L~~L~l~ 258 (330)
++++| .+.+. .+..+++|+.|++++|. ++.. +.+..+++|+.|++++|. +.+ +..+..+++|+.|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 88888 44422 44567889999998887 5543 456778999999999985 332 2357778999999999
Q ss_pred CCCCCCccccccC-CCCCeEeCCCCCCCch
Q 020161 259 SNKLTLVDDIQNL-SRLEDLWLNDNQIESL 287 (330)
Q Consensus 259 ~n~~~~~~~~~~~-~~L~~L~l~~n~l~~~ 287 (330)
+| ++.. .+..+ ..+..|++++|+++.+
T Consensus 281 ~~-i~~~-~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 281 GI-VPDG-TLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TS-SCTT-CHHHHHHHSTTSEESCCCSCCT
T ss_pred Cc-cCHH-HHHHHHhhCcceEEecccCccc
Confidence 99 5443 12222 2356667889998864
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=2.3e-17 Score=152.10 Aligned_cols=176 Identities=20% Similarity=0.316 Sum_probs=113.2
Q ss_pred CCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccc
Q 020161 97 GLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 97 ~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 175 (330)
+++.|++++|.++++|. + .++|++|++++|.+..++ ..+++|+.|++++|.+.+++.+.. +|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcC
Confidence 45555555555554443 2 244555555555554433 224455555555555544333222 566666666665
Q ss_pred cccccccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCC---
Q 020161 176 RVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNL--- 252 (330)
Q Consensus 176 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L--- 252 (330)
+.++. .+++|+.|++++|.+...+. .+++|+.|++++|.+++.+.+. ++|+.|++++|.++.++.+.. +|
T Consensus 133 ~~lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~ 205 (571)
T 3cvr_A 133 TMLPE--LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHHS 205 (571)
T ss_dssp SCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC--------
T ss_pred CCCCC--cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhcc
Confidence 54333 45667777777777666533 5667888888888888776643 888999999998888776333 67
Q ss_pred ----CEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCc
Q 020161 253 ----HVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 253 ----~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~ 286 (330)
+.|++++|+++.+ ..+..+++|+.|++++|+++.
T Consensus 206 ~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred cccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 9999999999988 447779999999999999984
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=3.5e-19 Score=149.46 Aligned_cols=170 Identities=23% Similarity=0.311 Sum_probs=150.6
Q ss_pred ccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc
Q 020161 94 ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN 173 (330)
Q Consensus 94 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (330)
.+..+..++++++.++.++.+..+++|++|++++|.+..++ ....+++|+.|++++|.+.++..+..+++|++|++++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 35567778888899888877788999999999999998876 34457999999999999998766999999999999999
Q ss_pred cccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCC
Q 020161 174 RLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNL 252 (330)
Q Consensus 174 ~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L 252 (330)
.++..+.+.. ++|++|++++|.+.+. .+..+++|+.|++++|.+++.+.+..+++|+.|++++|.+++++.+..+++|
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L 174 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKV 174 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred ccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence 9987666665 8999999999998887 6888999999999999999998888999999999999999999889999999
Q ss_pred CEEEcCCCCCCCc
Q 020161 253 HVLDVSSNKLTLV 265 (330)
Q Consensus 253 ~~L~l~~n~~~~~ 265 (330)
+.|++++|+++..
T Consensus 175 ~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 175 NWIDLTGQKCVNE 187 (263)
T ss_dssp CEEEEEEEEEECC
T ss_pred CEEeCCCCcccCC
Confidence 9999999998766
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=6.4e-17 Score=134.78 Aligned_cols=169 Identities=23% Similarity=0.328 Sum_probs=118.6
Q ss_pred CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEE
Q 020161 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVF 123 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L 123 (330)
...++++++++.++.+|..+. ++++.|++++|.+....+ ..+..+++|++|++++|.++.+++ +..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSD---ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCH---hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 467889999999999987654 689999999999988643 356678999999999999998765 7788999999
Q ss_pred EccCCCCcCccccc-cccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccccccc--cccCCCCCcEEECcCCCcc
Q 020161 124 DVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRVME--NLQNLTNLQELWLGRNRIK 198 (330)
Q Consensus 124 ~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~i~ 198 (330)
++++|.+..++... ..+++|+.|++++|.+..+. .+..+++|++|++++|.++.+. .+..+++|++|++++|.+.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999888766433 33677777777777766642 2456666666666666664332 3555556666666666555
Q ss_pred cc---ccCCCCcccEEECCCCccc
Q 020161 199 VV---NLCGLKCIKKISLQSNRLT 219 (330)
Q Consensus 199 ~~---~~~~~~~L~~L~l~~~~l~ 219 (330)
.. .+..+++|+.|++++|.++
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccCHHHHhCCCCCCEEEeeCCcee
Confidence 44 2344455555555555443
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.2e-17 Score=134.03 Aligned_cols=146 Identities=19% Similarity=0.299 Sum_probs=73.9
Q ss_pred cCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCC
Q 020161 140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN 216 (330)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~ 216 (330)
+++++.|++++|.+..+..+..+++|++|++++|.++.+..+..+++|++|++++|.+.+. .+..+++|++|++++|
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 3444555555554444334445555555555555554444555555555555555555432 3444455555555555
Q ss_pred ccccc--cccccccccceEEccCCC-CCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCC
Q 020161 217 RLTSM--KGFEECIALEELYLSHNG-ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE 285 (330)
Q Consensus 217 ~l~~~--~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~ 285 (330)
.+++. ..+..+++|+.|++++|. ++.++.+..+++|++|++++|++++++.+..+++|+.|++++|++.
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 55442 234445555555555554 5555445555555555555555555544555555555555555544
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=8e-17 Score=148.55 Aligned_cols=175 Identities=25% Similarity=0.325 Sum_probs=104.7
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (330)
++++|+++++.+.++|. ..+++|++|++++|.++.+| ..+++|++|++++|.+++. +. +. .+|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~i-p~----l~--~~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD-NLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTL-PE----LP--ASLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCC-CC----CC--TTCCEEECC
T ss_pred CccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCc-ch----hh--cCCCEEECC
Confidence 67777777777777665 23467777777777777776 3467777777777777663 11 22 277777777
Q ss_pred CCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCC
Q 020161 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184 (330)
Q Consensus 105 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 184 (330)
+|.++.+|. .+++|++|++++|.+..++. .+++|+.|++++|.+..++.+. ++|+.|++++|.++.++.+..
T Consensus 129 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~- 200 (571)
T 3cvr_A 129 NNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV- 200 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC--
T ss_pred CCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH-
Confidence 777777766 56777777777777766554 3566777777777666644332 566666666666653322222
Q ss_pred CCC-------cEEECcCCCcccc--ccCCCCcccEEECCCCccc
Q 020161 185 TNL-------QELWLGRNRIKVV--NLCGLKCIKKISLQSNRLT 219 (330)
Q Consensus 185 ~~L-------~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~ 219 (330)
+| +.|++++|.+... .+..+++|+.|++++|.++
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp --------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred -hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 34 4555555444433 2333444444444444443
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=3e-16 Score=137.19 Aligned_cols=228 Identities=17% Similarity=0.209 Sum_probs=174.2
Q ss_pred CEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC-CCC--CCCCCcccE-EE
Q 020161 49 TELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD--VSIFKKLSV-FD 124 (330)
Q Consensus 49 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~--~~~~~~L~~-L~ 124 (330)
++++.++++++.+|..+ .+++++|++++|.++.. +...|..+++|++|++++|.+.+ ++. +..++++.+ +.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEE---CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCc---CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 67889999999999865 46899999999999876 33457789999999999999754 553 667777765 56
Q ss_pred ccCCCCcCccccc-cccCCCcEEEccCCCCCCccc--ccCCCCccEEEcCC-cccccc--ccccCC-CCCcEEECcCCCc
Q 020161 125 VSFNEITSSHGLS-NVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGS-NRLRVM--ENLQNL-TNLQELWLGRNRI 197 (330)
Q Consensus 125 l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~-~~~~~~--~~l~~~-~~L~~L~l~~~~i 197 (330)
+..|++..+++.. ..+++|+.|++++|.+..... +....++..+++.+ +.+..+ ..+..+ ..++.|++++|.+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 6778888886544 448999999999999887543 34455677788755 455432 234444 3688999999999
Q ss_pred ccc--ccCCCCcccEEECCC-Ccccccc--ccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCC-CCCCccccccC
Q 020161 198 KVV--NLCGLKCIKKISLQS-NRLTSMK--GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN-KLTLVDDIQNL 271 (330)
Q Consensus 198 ~~~--~~~~~~~L~~L~l~~-~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~ 271 (330)
..+ ......+++.+.+.+ |.++.++ .+..+++|+.|++++|.++.++. ..+.+|+.|.+.++ .++.++.+..+
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l 245 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKL 245 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTC
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchhC
Confidence 877 333456799999874 6787774 47889999999999999999864 34667888877665 56777888899
Q ss_pred CCCCeEeCCCC
Q 020161 272 SRLEDLWLNDN 282 (330)
Q Consensus 272 ~~L~~L~l~~n 282 (330)
++|+.+++.++
T Consensus 246 ~~L~~l~l~~~ 256 (350)
T 4ay9_X 246 VALMEASLTYP 256 (350)
T ss_dssp CSCCEEECSCH
T ss_pred cChhhCcCCCC
Confidence 99999999764
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=9.7e-17 Score=128.64 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=98.1
Q ss_pred cccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCC
Q 020161 93 DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172 (330)
Q Consensus 93 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 172 (330)
..+++|++|++++|.++.++.+..+++|++|++++|.+... ..+..+++|++|++++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~-----------------------~~l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-----------------------NPISGLSNLERLRIMG 97 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC-----------------------GGGTTCTTCCEEEEEC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc-----------------------hhhhcCCCCCEEEeEC
Confidence 34677888888888777777666677777777777654433 3344445555555555
Q ss_pred ccccc--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCc-cccccccccccccceEEccCCCCCCCcCC
Q 020161 173 NRLRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNR-LTSMKGFEECIALEELYLSHNGISKMEGL 246 (330)
Q Consensus 173 ~~~~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 246 (330)
|.++. +..+..+++|++|++++|.+.+. .+..+++|+.|++++|. ++..+.+..+++|+.|++++|.+++++.+
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l 177 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI 177 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTG
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHh
Confidence 55542 34455566666666666666542 45566677777777775 66666677778888888888888887777
Q ss_pred CCCCCCCEEEcCCCCCCC
Q 020161 247 STLVNLHVLDVSSNKLTL 264 (330)
Q Consensus 247 ~~~~~L~~L~l~~n~~~~ 264 (330)
..+++|+.|++++|++++
T Consensus 178 ~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGCSSCCEEEECBC----
T ss_pred ccCCCCCEEEeeCcccCC
Confidence 788888888888887754
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=9.4e-16 Score=125.82 Aligned_cols=150 Identities=23% Similarity=0.273 Sum_probs=123.8
Q ss_pred cCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChh-hhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161 23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (330)
Q Consensus 23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 101 (330)
..+.+.++++++.+..+|. ..+++|++|++++|.+..++ ..|.++++|++|++++|.+.... ...|..+++|++|
T Consensus 18 ~Cs~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~---~~~~~~l~~L~~L 93 (229)
T 3e6j_A 18 SCSGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP---VGVFDSLTQLTVL 93 (229)
T ss_dssp EEETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEE
T ss_pred EEeCCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC---hhhcccCCCcCEE
Confidence 4457889999999999986 56799999999999999874 45889999999999999997752 3346779999999
Q ss_pred EccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCcccc
Q 020161 102 ILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLR 176 (330)
Q Consensus 102 ~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 176 (330)
++++|.++.++. +..+++|++|++++|.+..++.....+++|+.|++++|.+..+. .+..+++|+.|++++|.+.
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999998876 67899999999999999888766666788888888888877743 4667777788888777653
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=4.8e-16 Score=125.66 Aligned_cols=163 Identities=21% Similarity=0.265 Sum_probs=115.2
Q ss_pred CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (330)
-+.++++++.+..+|. ..++++++|++++|.++.++.. +..+++|++|++++|.+.... ...|..+++|++|+++
T Consensus 9 ~~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP---NGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC---hhhcCCCCCcCEEECC
Confidence 4677888888888774 5577999999999999987764 778999999999999888652 2345678899999999
Q ss_pred CCcCcCCCC--CCCCCcccEEEccCCCCcCccccc-cccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccccccc
Q 020161 105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRVME 179 (330)
Q Consensus 105 ~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~ 179 (330)
+|.++.++. +..+++|++|++++|.+..++... ..+++|+.|++++|.+..+. .+..+++|+.|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 999888775 677888999999888887766532 33566777777776665532 2455566666666665432
Q ss_pred cccCCCCCcEEECcCCCc
Q 020161 180 NLQNLTNLQELWLGRNRI 197 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~~i 197 (330)
..++.|+.|++..|.+
T Consensus 162 --~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKH 177 (208)
T ss_dssp --CCTTTTHHHHHHHHHC
T ss_pred --cCCCCHHHHHHHHHhC
Confidence 2233444444444433
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=6.8e-16 Score=125.87 Aligned_cols=146 Identities=20% Similarity=0.345 Sum_probs=115.3
Q ss_pred CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (330)
.+.++++++.+..+|. ..++++++|++++|.|..++. .|..+++|++|++++|.+.... ...|..+++|++|+++
T Consensus 13 ~~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~---~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA---PDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC---TTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC---HHHhhCCcCCCEEECC
Confidence 4688999999999886 556899999999999998876 5889999999999999998863 3456778999999999
Q ss_pred CCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccc
Q 020161 105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 105 ~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 175 (330)
+|.++.++. +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+. .+..+++|+.|++++|.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999998886 67889999999999998877543 233667777777777766632 355566666666666654
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.2e-15 Score=124.32 Aligned_cols=147 Identities=21% Similarity=0.355 Sum_probs=111.3
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh--hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS--RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 102 (330)
..++++++++.+..+|. ..++.+++|++++|.++.+++ .|..+++|++|++++|.+.... ...|..+++|++|+
T Consensus 12 ~~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~---~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 12 EGTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE---EGAFEGASGVNEIL 87 (220)
T ss_dssp ETTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEE
T ss_pred CCCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC---HHHhCCCCCCCEEE
Confidence 34689999999999886 567788999999999998743 3789999999999999988763 33567789999999
Q ss_pred ccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCccc
Q 020161 103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 103 l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~ 175 (330)
+++|.++.++. +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+ ..+..+++|+.|++++|.+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999988775 77888899999999888876543 23356667777776666653 3455556666666666554
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=1.1e-15 Score=134.25 Aligned_cols=170 Identities=25% Similarity=0.389 Sum_probs=136.4
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hh-cCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-IS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 102 (330)
..++++++++.+..+|. ..++.++.|++++|.|+.++.. +. .+++|++|++++|.+.... ...|..+++|++|+
T Consensus 19 ~~~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~---~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS---SEAFVPVPNLRYLD 94 (361)
T ss_dssp ETTEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC---hhhccCCCCCCEEE
Confidence 34789999999999886 5678899999999999988775 55 8999999999999998863 33577899999999
Q ss_pred ccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCccc--c---cCCCCccEEEcCCcc
Q 020161 103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEE--I---EHFHDLQILEFGSNR 174 (330)
Q Consensus 103 l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~---~~~~~L~~L~l~~~~ 174 (330)
+++|.++.++. +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+.. + ..+++|+.|++++|.
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99999998765 78899999999999999887543 3447899999999998887532 3 568889999999998
Q ss_pred cccc--ccccCCCC--CcEEECcCCCcc
Q 020161 175 LRVM--ENLQNLTN--LQELWLGRNRIK 198 (330)
Q Consensus 175 ~~~~--~~l~~~~~--L~~L~l~~~~i~ 198 (330)
++.+ ..+..++. ++.|++++|.+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8643 23555554 477888888664
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1e-15 Score=124.81 Aligned_cols=142 Identities=20% Similarity=0.354 Sum_probs=109.8
Q ss_pred cEEEccCCCCCCcccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcc
Q 020161 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRL 218 (330)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l 218 (330)
+.+++.++.++.++. .-.++++.|++++|.++.+ ..+..+++|+.|++++|.+... .+..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 567777777776432 1126788999998888643 3577788889999988888766 577788888888888888
Q ss_pred ccccc--cccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161 219 TSMKG--FEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 219 ~~~~~--~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~ 286 (330)
+..+. +..+++|+.|++++|.++++ ..+..+++|+.|++++|+++.+ ..+..+++|+.|++++|++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 87743 67788888888888888876 3577888888888888888877 347778888888888888764
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=9.5e-15 Score=118.01 Aligned_cols=139 Identities=24% Similarity=0.421 Sum_probs=75.0
Q ss_pred CccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc--cccccccceEEcc
Q 020161 164 DLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLS 236 (330)
Q Consensus 164 ~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~l~l~ 236 (330)
++++|++++|.++.. ..+..+++|++|++++|.+... .+..+++|++|++++|.++..+. +..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 344444444444322 1134444555555555544443 23445556666666665555432 4556666666666
Q ss_pred CCCCCCCcC--CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161 237 HNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312 (330)
Q Consensus 237 ~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 312 (330)
+|.+++++. +..+++|++|++++|+++++ ..+..+++|+.|++++|++.. .|++|+.|+++.|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----------CTTTTHHHHHHHHHCT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----------CCCCHHHHHHHHHhCC
Confidence 666665532 45666666666666666655 235566667777777666542 2355666665555543
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=6.8e-15 Score=129.13 Aligned_cols=168 Identities=23% Similarity=0.297 Sum_probs=81.7
Q ss_pred cEEEccCCCCcCccccccccCCCcEEEccCCCCCCc--cccc-CCCCccEEEcCCcccccc--ccccCCCCCcEEECcCC
Q 020161 121 SVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIE-HFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRN 195 (330)
Q Consensus 121 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~ 195 (330)
+.++++++.+..++.. ....++.|++++|.+..+ ..+. .+++|+.|++++|.++.+ ..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4667777776665532 234466666666666553 2233 555666666666555422 23445555555555555
Q ss_pred CccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCcc--cc---
Q 020161 196 RIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLVD--DI--- 268 (330)
Q Consensus 196 ~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~~--- 268 (330)
.+..... ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|+++.++ .+
T Consensus 99 ~l~~~~~-------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 159 (361)
T 2xot_A 99 HLHTLDE-------------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159 (361)
T ss_dssp CCCEECT-------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred cCCcCCH-------------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence 5444310 1234444555555555554443 23444555555555555555441 11
Q ss_pred ccCCCCCeEeCCCCCCCchHHHHHHHhccccc--cchhhccCCCcc
Q 020161 269 QNLSRLEDLWLNDNQIESLESIVEAVAGSRET--LTTIYLENNPCK 312 (330)
Q Consensus 269 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~--L~~l~l~~n~~~ 312 (330)
..+++|+.|++++|+++.++ ...+..++. ++.|++++|++.
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --CTTCCEEECCSSCCCCCC---HHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCCcCCEEECCCCCCCccC---HHHhhhccHhhcceEEecCCCcc
Confidence 33455555555555555443 122233333 244555555543
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=122.75 Aligned_cols=143 Identities=23% Similarity=0.326 Sum_probs=116.0
Q ss_pred CcEEEccCCCCCCcccccCCCCccEEEcCCcccccc---ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCC
Q 020161 143 LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN 216 (330)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~ 216 (330)
-+.++++++.+..++. .-...+++|++++|.++.. ..+..+++|+.|++++|.+... .+..+++|++|++++|
T Consensus 13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 3578888888877532 1234578999999988644 2377889999999999988876 4778889999999999
Q ss_pred cccccc--ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161 217 RLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 217 ~l~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~ 286 (330)
.++..+ .+..+++|+.|++++|.++++ ..+..+++|++|++++|+++.+ ..+..+++|+.|++++|++..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 988874 377889999999999999886 4578889999999999999887 567888999999999998874
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=3.4e-14 Score=116.49 Aligned_cols=145 Identities=27% Similarity=0.379 Sum_probs=101.3
Q ss_pred cCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEc
Q 020161 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDV 125 (330)
Q Consensus 48 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l 125 (330)
-+.++++++++..+|..+. ++|++|++++|.+....+ ..|..+++|++|++++|.++.++. +..+++|++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEP---GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCH---HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 5678999999999987553 899999999999988643 356678999999999999988875 678899999999
Q ss_pred cCCCCcCccccc-cccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCc
Q 020161 126 SFNEITSSHGLS-NVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRI 197 (330)
Q Consensus 126 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i 197 (330)
++|.+..++... ..+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 999888776543 3366666777766666553 3345555555555555555422 1234444555555554443
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=5.6e-14 Score=111.97 Aligned_cols=124 Identities=26% Similarity=0.323 Sum_probs=101.3
Q ss_pred CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (330)
.++++++++.+..+|. ..++++++|++++|.++.+|..+.++++|++|++++|.++... ...|..+++|++|++++
T Consensus 12 ~~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~---~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS---NQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC---HhHccCCCCCCEEECCC
Confidence 4689999999999886 4678999999999999999988999999999999999998863 34577899999999999
Q ss_pred CcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCC
Q 020161 106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEV 153 (330)
Q Consensus 106 ~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 153 (330)
|.++.+++ +..+++|++|++++|.+..++.. ...+++|+.|++.+|.+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 99998775 77889999999999988876653 22355566666666554
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=4.1e-18 Score=157.69 Aligned_cols=120 Identities=25% Similarity=0.351 Sum_probs=74.3
Q ss_pred CCcEEECcCCCcccc-ccCCCCcccEEECCCCcccccc-ccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161 186 NLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263 (330)
Q Consensus 186 ~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 263 (330)
.|+.|++++|.+... .+..+++|+.|++++|.++..| .+..+++|+.|++++|.+++++.+..+++|+.|++++|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence 356666666665554 3555566666666666666553 45566667777777776666666666667777777777666
Q ss_pred Cc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhh
Q 020161 264 LV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305 (330)
Q Consensus 264 ~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~ 305 (330)
+. ..+..+++|+.|++++|+++.+++....+...+|+|+.|+
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55 3466666777777777766655433334444456666553
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=5.4e-15 Score=116.19 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=88.0
Q ss_pred ccCCCCCcEEECcCCCcccc-ccCCCC-cccEEECCCCccccccccccccccceEEccCCCCCCCcC--CCCCCCCCEEE
Q 020161 181 LQNLTNLQELWLGRNRIKVV-NLCGLK-CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLD 256 (330)
Q Consensus 181 l~~~~~L~~L~l~~~~i~~~-~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~ 256 (330)
+..+++|++|++++|.+... .+.... +|+.|++++|.+++.+.+..++.|+.|++++|.+++++. +..+++|+.|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34445555555555555443 222222 666666666666666566677777777777777776642 36677888888
Q ss_pred cCCCCCCCcc---ccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161 257 VSSNKLTLVD---DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313 (330)
Q Consensus 257 l~~n~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 313 (330)
+++|+++.++ .+..+++|+.|++++|+++.++..-..++..+++|+.|++++|....
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888877663 56777888888888888876655434456777888888888877543
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.7e-14 Score=112.45 Aligned_cols=130 Identities=24% Similarity=0.226 Sum_probs=96.9
Q ss_pred CCCcEEECcCCCcc--cc--ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCC-CcCC-CCCCCCCEEEcC
Q 020161 185 TNLQELWLGRNRIK--VV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-MEGL-STLVNLHVLDVS 258 (330)
Q Consensus 185 ~~L~~L~l~~~~i~--~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~-~~~~-~~~~~L~~L~l~ 258 (330)
+++++|++++|.+. .. .+..+++|+.|++++|.++....+..+++|+.|++++|.+++ ++.+ ..+++|+.|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 45666666666655 22 235566777777777777766667778888888888888887 4443 347889999999
Q ss_pred CCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161 259 SNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 259 ~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
+|+++++ ..+..+++|+.|++++|+++.++......+..+++|+.|++++|.....
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9988876 4677888999999999998877654446778889999999999886554
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=2.9e-14 Score=108.79 Aligned_cols=124 Identities=24% Similarity=0.244 Sum_probs=89.8
Q ss_pred CCCcEEECcCCCcc--cc--ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCC-CcC-CCCCCCCCEEEcC
Q 020161 185 TNLQELWLGRNRIK--VV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-MEG-LSTLVNLHVLDVS 258 (330)
Q Consensus 185 ~~L~~L~l~~~~i~--~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~-~~~-~~~~~~L~~L~l~ 258 (330)
++++.|++++|.+. .. .+..+++|+.|++++|.++..+.+..++.|+.|++++|.+++ ++. +..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 45666666666655 22 345666777777777777766666777888888888888877 543 3347888888888
Q ss_pred CCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccC
Q 020161 259 SNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308 (330)
Q Consensus 259 ~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~ 308 (330)
+|++++. ..+..+++|++|++++|+++.++......+..+++|+.|++++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888875 5677888888888888888877654445677788888888753
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=1.1e-13 Score=110.18 Aligned_cols=125 Identities=24% Similarity=0.343 Sum_probs=97.4
Q ss_pred CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh--hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
.++++++++.+..+|. ..++++++|++++|.+..++.. +..+++|++|++++|.+++..+ ..|..+++|++|++
T Consensus 10 ~~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP---NAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH---hHcCCcccCCEEEC
Confidence 4788999999988886 4566999999999999988763 8899999999999999988633 45667899999999
Q ss_pred cCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCC
Q 020161 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVP 154 (330)
Q Consensus 104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 154 (330)
++|.++.++. +..+++|++|++++|.+.+..+. ...+++|+.|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999987664 67788888998888888766432 233556666666666554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=2.3e-14 Score=111.63 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=43.6
Q ss_pred CCCCcCEEecCCCCCC--ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC-CCC-CCCCCc
Q 020161 44 FPTNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKK 119 (330)
Q Consensus 44 ~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~ 119 (330)
.+++|++|++++|.+. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.. +|. +..+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 3455666666666555 4554455555555555555555442 233445555555555555554 332 223455
Q ss_pred ccEEEccCCCCcCc
Q 020161 120 LSVFDVSFNEITSS 133 (330)
Q Consensus 120 L~~L~l~~~~~~~~ 133 (330)
|++|++++|.+..+
T Consensus 97 L~~L~Ls~N~l~~~ 110 (168)
T 2ell_A 97 LTHLNLSGNKLKDI 110 (168)
T ss_dssp CCEEECBSSSCCSS
T ss_pred CCEEeccCCccCcc
Confidence 55555555544443
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=1.2e-14 Score=125.83 Aligned_cols=96 Identities=17% Similarity=0.289 Sum_probs=63.1
Q ss_pred CCcccEEECCCCcccccc--ccccccccceEEccCCCCCCC--cCCCCCCCCC-EEEcCCCCCCCc--cccccCCCCCeE
Q 020161 205 LKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLH-VLDVSSNKLTLV--DDIQNLSRLEDL 277 (330)
Q Consensus 205 ~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~-~L~l~~n~~~~~--~~~~~~~~L~~L 277 (330)
+++|+.+++.+|.++.++ .+..|.+|+.+++.++ ++.+ .+|.++.+|+ .+.+.+ .++.+ ..+.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566777777776666553 4666777777777665 5554 2466677777 777766 55544 556677777777
Q ss_pred eCCCCCCCchHHHHHHHhccccccchhh
Q 020161 278 WLNDNQIESLESIVEAVAGSRETLTTIY 305 (330)
Q Consensus 278 ~l~~n~l~~~~~~~~~~~~~~~~L~~l~ 305 (330)
++.+|.++.++ ..++.+|++|+.++
T Consensus 303 ~l~~n~i~~I~---~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLG---DELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEEC---TTTTCTTCCCCEEE
T ss_pred EeCCCccCccc---hhhhcCCcchhhhc
Confidence 77777777665 34566777777654
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=4.8e-15 Score=137.21 Aligned_cols=189 Identities=19% Similarity=0.234 Sum_probs=140.9
Q ss_pred CCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCc-------------CCccccccchhhcccCCCcEEE-ccCCcC
Q 020161 43 EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL-------------IDDAAIEPISRWDALAGLEELI-LRDNKL 108 (330)
Q Consensus 43 ~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~~~L~~L~-l~~~~l 108 (330)
...++|+.|++++|.++.+|..++.+++|+.|++++|. ..+. .+..+..+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~---~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG---HHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC---CHHHHHHHHhcccCcchhhccc
Confidence 34688999999999999999999999999999997764 2222 222345566677776 444433
Q ss_pred cCCCC-------CCC--CCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc
Q 020161 109 MKIPD-------VSI--FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM 178 (330)
Q Consensus 109 ~~~~~-------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 178 (330)
..++. +.. ...|+.|++++|.+..++. ...+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.+
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence 22211 000 1258889999998888776 55578899999999988874 5688889999999999988766
Q ss_pred ccccCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCccccccc-----cccccccceEEc
Q 020161 179 ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKG-----FEECIALEELYL 235 (330)
Q Consensus 179 ~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~~L~~l~l 235 (330)
+.+..+++|+.|++++|.+.+. .+..+++|+.|++++|.+++.+. +..+++|+.|++
T Consensus 502 p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6888889999999999987765 46778899999999998887743 234778888753
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=5.8e-14 Score=111.88 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=74.0
Q ss_pred cEEEcCCccccccc-cccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCC
Q 020161 166 QILEFGSNRLRVME-NLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI 240 (330)
Q Consensus 166 ~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~ 240 (330)
+.++++++.++.++ .+ .+.+++|++++|.+... .+..+++|+.|++++|.++..+ .+..++.|+.|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 46666666665332 22 24667777777766554 4556666777777777666653 356666677777777766
Q ss_pred CCCc--CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCC
Q 020161 241 SKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIE 285 (330)
Q Consensus 241 ~~~~--~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~ 285 (330)
+.++ .+..+++|+.|++++|+++.+ ..+..+++|+.|++++|++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6653 356666777777777766655 23556666777777776665
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=3e-14 Score=108.67 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=37.7
Q ss_pred CCcCEEecCCCCCC--ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC-CCC-CCCCCccc
Q 020161 46 TNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKKLS 121 (330)
Q Consensus 46 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~L~ 121 (330)
+++++|++++|.+. .+|..+..+++|++|++++|.+... ..+..+++|++|++++|.++. +|. +..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 44555555555554 4444444555555555555544442 223344445555555544444 322 22244444
Q ss_pred EEEccCCCCcC
Q 020161 122 VFDVSFNEITS 132 (330)
Q Consensus 122 ~L~l~~~~~~~ 132 (330)
+|++++|.+..
T Consensus 92 ~L~ls~N~i~~ 102 (149)
T 2je0_A 92 HLNLSGNKIKD 102 (149)
T ss_dssp EEECTTSCCCS
T ss_pred EEECCCCcCCC
Confidence 44444444433
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=7.1e-14 Score=111.34 Aligned_cols=120 Identities=23% Similarity=0.377 Sum_probs=96.1
Q ss_pred ccEEEcCCcccccc-ccccCCCCCcEEECcCCCccccc----cCCCCcccEEECCCCccccc--cccccccccceEEccC
Q 020161 165 LQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVVN----LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSH 237 (330)
Q Consensus 165 L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~----~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~ 237 (330)
.+.++++++.++.+ ..+. ..+++|++++|.+.... +..+++|++|++++|.+++. ..+..++.|+.|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 36888888887644 3333 37899999999887662 67788899999999988877 3577888999999999
Q ss_pred CCCCCCc--CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161 238 NGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIES 286 (330)
Q Consensus 238 ~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~ 286 (330)
|.+++++ .+..+++|++|++++|++++. ..+..+++|++|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9988864 377888999999999998877 567788899999999998874
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=2e-13 Score=118.24 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=79.4
Q ss_pred CCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccc-eEEccCCCCCCC--cCCCCCCCCCE
Q 020161 183 NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALE-ELYLSHNGISKM--EGLSTLVNLHV 254 (330)
Q Consensus 183 ~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~-~l~l~~~~~~~~--~~~~~~~~L~~ 254 (330)
.+++|+.++++.|.+... .|..+.+|+.+.+.+| ++.+ ..+..|.+|+ .+.+.. +++.+ .+|.++++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 378899999999877666 6888999999999887 6555 4588999999 999988 77766 46889999999
Q ss_pred EEcCCCCCCCc--cccccCCCCCeEeC
Q 020161 255 LDVSSNKLTLV--DDIQNLSRLEDLWL 279 (330)
Q Consensus 255 L~l~~n~~~~~--~~~~~~~~L~~L~l 279 (330)
+++++|.++.+ ..+.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999877 57889999998864
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=7.5e-13 Score=103.95 Aligned_cols=127 Identities=28% Similarity=0.381 Sum_probs=96.8
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
+.+.++++++++..+|. ..++++++|++++|.+..++.. +..+++|++|++++|.++... ...+..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP---DGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC---hhHccCCCccCEEEC
Confidence 45788888888888874 5568999999999999887764 688999999999999888652 234567888999999
Q ss_pred cCCcCcCCCC--CCCCCcccEEEccCCCCcCccccc-cccCCCcEEEccCCCCCC
Q 020161 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPK 155 (330)
Q Consensus 104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~ 155 (330)
++|.++.++. +..+++|++|++++|.+..++... ..+++|+.|++++|.+..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9998888775 577888888888888887666533 235666666666665543
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=4.4e-13 Score=105.29 Aligned_cols=123 Identities=23% Similarity=0.366 Sum_probs=97.2
Q ss_pred CccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc--cccccccceEEccCC
Q 020161 164 DLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHN 238 (330)
Q Consensus 164 ~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~l~l~~~ 238 (330)
..+.++++++.++.++. ...+++++|++++|.+... .+..+++|++|++++|.++..+. +..+++|+.|++++|
T Consensus 8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 35678888887764432 2236899999999988766 35778899999999998887743 678899999999999
Q ss_pred CCCCCcC--CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCch
Q 020161 239 GISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 239 ~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~ 287 (330)
.+++++. +..+++|++|++++|+++.+ ..+..+++|++|++++|++...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 9988753 67888999999999999877 3357788999999999998854
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9.7e-14 Score=108.97 Aligned_cols=125 Identities=18% Similarity=0.319 Sum_probs=60.9
Q ss_pred CCCcCEEecCCCCCCChhhhhhc-CCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCccc
Q 020161 45 PTNLTELDLTANRLTSLDSRISH-LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLS 121 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~ 121 (330)
+++|++|++++|.+..++. +.. .++|++|++++|.+.+. ..+..+++|++|++++|.++.+++ +..+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-----cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3445555555555554432 222 22555555555554442 233344555555555555554443 24455555
Q ss_pred EEEccCCCCcCccc--cccccCCCcEEEccCCCCCCccc-----ccCCCCccEEEcCCccc
Q 020161 122 VFDVSFNEITSSHG--LSNVTDTLKELYVSKNEVPKMEE-----IEHFHDLQILEFGSNRL 175 (330)
Q Consensus 122 ~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~ 175 (330)
+|++++|.+..++. ....+++|+.|++++|.+..... +..+++|+.|+++.+..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555544443 22234555555555555544321 45566666666666554
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=3e-12 Score=113.48 Aligned_cols=253 Identities=13% Similarity=0.178 Sum_probs=180.0
Q ss_pred CCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcc
Q 020161 44 FPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKL 120 (330)
Q Consensus 44 ~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L 120 (330)
++..++.+.+.+ .++.++.. |.++ +|+.+.+..+ +..+ ...+|.. .+|+.+.+.. .++.++. +..+++|
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I---~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSI---GDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEE---CTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEE---CHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 346778888765 46666654 6665 7999998876 5444 2334555 4699999876 5665553 7888999
Q ss_pred cEEEccCCCCcCccccccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcccccc-ccccCCCCCcEEECcCC--
Q 020161 121 SVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRN-- 195 (330)
Q Consensus 121 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~-- 195 (330)
+.+++..|++..++...+.+.+|+.+.+..+ +..+ ..|..+.+|+.+.+..+-.... ..+.+ ++|+.+.+..+
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~i~ 260 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNGVT 260 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETTCC
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCCcc
Confidence 9999999988888777666788999998755 4443 5688889999999987532222 23444 67888888554
Q ss_pred CccccccCCCCcccEEECCCCccc-----cc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc-
Q 020161 196 RIKVVNLCGLKCIKKISLQSNRLT-----SM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV- 265 (330)
Q Consensus 196 ~i~~~~~~~~~~L~~L~l~~~~l~-----~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~- 265 (330)
.+....|..+++|+.+.+.++.+. .. ..+..|++|+.+.+. ++++.+ .+|.++.+|+.+.+..+ ++.+
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 233447888899999998887654 22 457889999999988 446665 35788889999999554 6655
Q ss_pred -cccccCCCCCeEeCCCCCCCchHHHHHHHhcccc-ccchhhccCCCcc
Q 020161 266 -DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE-TLTTIYLENNPCK 312 (330)
Q Consensus 266 -~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-~L~~l~l~~n~~~ 312 (330)
..+.++ +|+.+++.+|.+..++ ...+..++ +++.|++-.+...
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~---~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVF---EKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCC---CSSCCCSCTTCCEEEECGGGHH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccc---cccccCCCCCccEEEeCHHHHH
Confidence 567788 8999999998877654 34455664 6777777766643
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=4.6e-12 Score=98.66 Aligned_cols=106 Identities=27% Similarity=0.355 Sum_probs=90.8
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
+.++++++++.+..+|. ..++++++|++++|.|+.+++ .|.++++|++|++++|.+.... ...|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP---AGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC---hhhccCCCCCCEEEC
Confidence 56789999999999886 456899999999999998854 5899999999999999998763 334677899999999
Q ss_pred cCCcCcCCCC--CCCCCcccEEEccCCCCcCcc
Q 020161 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSH 134 (330)
Q Consensus 104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~ 134 (330)
++|.++.++. +..+++|++|++++|.+....
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999998875 778899999999999887654
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=9.6e-12 Score=97.23 Aligned_cols=107 Identities=26% Similarity=0.375 Sum_probs=90.1
Q ss_pred CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
..+.++++++.+..+|. ..+++|++|++++|.+.++++ .|.++++|++|++++|.+.... ...|..+++|++|++
T Consensus 13 ~~~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP---TGVFDKLTQLTQLDL 88 (174)
T ss_dssp CSSEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC---hhHhCCcchhhEEEC
Confidence 45789999999999886 456899999999999998854 6889999999999999998852 234567899999999
Q ss_pred cCCcCcCCCC--CCCCCcccEEEccCCCCcCccc
Q 020161 104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG 135 (330)
Q Consensus 104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~ 135 (330)
++|.++.++. +..+++|++|++++|.+.....
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9999998875 7788999999999998876543
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=7.4e-15 Score=117.70 Aligned_cols=133 Identities=30% Similarity=0.409 Sum_probs=99.5
Q ss_pred cccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccc-cccccccceEEccCCCCCCCcCCCCCCCCCEEEc
Q 020161 180 NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKG-FEECIALEELYLSHNGISKMEGLSTLVNLHVLDV 257 (330)
Q Consensus 180 ~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l 257 (330)
.+..+++|++|++++|.+... .+..+++|+.|++++|.++..+. +..+++|+.|++++|.+++++.+..+++|++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence 455666677777776665554 44555677777777777776643 3456889999999999988877778889999999
Q ss_pred CCCCCCCc---cccccCCCCCeEeCCCCCCCch-------HHHHHHHhccccccchhhccCCCcccc
Q 020161 258 SSNKLTLV---DDIQNLSRLEDLWLNDNQIESL-------ESIVEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 258 ~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
++|+++.+ ..+..+++|++|++++|+++.. +......+..+++|+.|+ ++++...
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 99999876 3578899999999999988754 333445578889999865 7776553
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.31 E-value=2.5e-10 Score=101.14 Aligned_cols=249 Identities=10% Similarity=0.169 Sum_probs=174.1
Q ss_pred CCCcEEeccCcccccCCCCCC-CCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161 24 LSNTVLDLTSFQLHDLDSVEF-PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~~~-~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 101 (330)
..++.+.+.+ .+..++...| -.+|+.+.+..+ ++.++.. |.++ +|+.+.+.. .+..+ ...+|..|++|+.+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I---~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL---KEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE---CSSTTTTCTTCCEE
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe---hHHHhhCcccCCee
Confidence 4444444433 2444443333 136888888766 7777664 6564 799999986 45444 33467889999999
Q ss_pred EccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCccccc
Q 020161 102 ILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRV 177 (330)
Q Consensus 102 ~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 177 (330)
++..+.++.++. ...+.+|+.+.+..+ +..+....+. +.+|+.+.+..+ +..+ ..|.. .+|+.+.+.++-...
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I 262 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGVTNI 262 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTCCEE
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCccEE
Confidence 999988888775 333688999998754 6665554444 788999999875 3332 34555 789999985432222
Q ss_pred -cccccCCCCCcEEECcCCCcc--------ccccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--c
Q 020161 178 -MENLQNLTNLQELWLGRNRIK--------VVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--E 244 (330)
Q Consensus 178 -~~~l~~~~~L~~L~l~~~~i~--------~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~ 244 (330)
...+.+|++|+.+.+..+.+. ...|..+++|+.+.+.+ .++.+ ..+..|..|+.+.+.. +++.+ .
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHH
Confidence 245788999999999887543 33788999999999985 45555 4688999999999954 46665 4
Q ss_pred CCCCCCCCCEEEcCCCCCCCc--cccccC-CCCCeEeCCCCCCC
Q 020161 245 GLSTLVNLHVLDVSSNKLTLV--DDIQNL-SRLEDLWLNDNQIE 285 (330)
Q Consensus 245 ~~~~~~~L~~L~l~~n~~~~~--~~~~~~-~~L~~L~l~~n~l~ 285 (330)
+|.++ +|+.+.+++|....+ ..+..+ ..+..+.+..+.+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 57888 999999999987766 445555 47889998887644
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=6.5e-14 Score=112.16 Aligned_cols=123 Identities=24% Similarity=0.373 Sum_probs=85.7
Q ss_pred CcCEEecCCC--CCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEE
Q 020161 47 NLTELDLTAN--RLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF 123 (330)
Q Consensus 47 ~L~~L~l~~~--~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L 123 (330)
.++...+.+. .++.+|..+..+++|++|++++|.+... + .+..+++|++|++++|.++.+|. +..+++|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l---~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---S--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC---C--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc---c--ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence 4556666554 5556666788888888888888887763 1 55667888888888888887776 4455778888
Q ss_pred EccCCCCcCccccccccCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCccc
Q 020161 124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRL 175 (330)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 175 (330)
++++|.+..++. ...+++|+.|++++|.+... ..+..+++|++|++++|.+
T Consensus 99 ~L~~N~l~~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 99 WISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEEEECCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ECcCCcCCcCCc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 888887776552 33356777777777776653 2356666677777766665
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1.1e-12 Score=115.12 Aligned_cols=148 Identities=22% Similarity=0.236 Sum_probs=104.4
Q ss_pred cCCCcEEEccCCCCCCcc--c----cc-CCCCccEEEcCCccccc--ccc-ccCCCCCcEEECcCCCccccc-------c
Q 020161 140 TDTLKELYVSKNEVPKME--E----IE-HFHDLQILEFGSNRLRV--MEN-LQNLTNLQELWLGRNRIKVVN-------L 202 (330)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~--~----~~-~~~~L~~L~l~~~~~~~--~~~-l~~~~~L~~L~l~~~~i~~~~-------~ 202 (330)
.+.++.|++++|.+.... . +. ..++|++|++++|.++. ... ...+++|+.|++++|.+++.+ +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 577889999999887621 1 22 33688999999888752 111 223457888899888887651 1
Q ss_pred -CCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc----
Q 020161 203 -CGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV---- 265 (330)
Q Consensus 203 -~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~---- 265 (330)
...++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3457788888888887654 1245677888888888888752 3456667888888888888754
Q ss_pred --cccccCCCCCeEeCCCCCCCch
Q 020161 266 --DDIQNLSRLEDLWLNDNQIESL 287 (330)
Q Consensus 266 --~~~~~~~~L~~L~l~~n~l~~~ 287 (330)
..+..++.|++|++++|.|++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 3345667888888888888864
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.4e-12 Score=114.55 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=87.9
Q ss_pred CcccEEEccCCCCcCcccc--c---c-ccCCCcEEEccCCCCCCc--cc-ccCCCCccEEEcCCcccccc------ccc-
Q 020161 118 KKLSVFDVSFNEITSSHGL--S---N-VTDTLKELYVSKNEVPKM--EE-IEHFHDLQILEFGSNRLRVM------ENL- 181 (330)
Q Consensus 118 ~~L~~L~l~~~~~~~~~~~--~---~-~~~~L~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~~~~~------~~l- 181 (330)
+.|+.|++++|.+...... . . .+.+|+.|++++|.+... .. ...+++|+.|++++|.++.. ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5577777777776542211 1 1 125677777777766541 11 22345677777777766421 112
Q ss_pred cCCCCCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC-----
Q 020161 182 QNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM----- 243 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~----- 243 (330)
...+.|++|++++|.+++. .+...++|++|++++|.++.. ..+..++.|+.|++++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356677777777776553 234566677777777776653 2345566777777777777652
Q ss_pred -cCCCCCCCCCEEEcCCCCCCCc
Q 020161 244 -EGLSTLVNLHVLDVSSNKLTLV 265 (330)
Q Consensus 244 -~~~~~~~~L~~L~l~~n~~~~~ 265 (330)
..+...++|++|++++|.+++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHH
Confidence 2234556777777777777654
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=3.5e-11 Score=114.74 Aligned_cols=106 Identities=23% Similarity=0.196 Sum_probs=57.2
Q ss_pred CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEEE
Q 020161 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFD 124 (330)
Q Consensus 46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~ 124 (330)
+.|+.|++++|.+..++..+..+++|++|++++|.++.. +..+..+++|++|+|++|.++.+|. +..+++|++|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l----p~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL----PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCC----CGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCccc----ChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 455555555555555555555555555555555555521 1234445555555555555555543 45555555555
Q ss_pred ccCCCCcCccccccccCCCcEEEccCCCCCC
Q 020161 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155 (330)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 155 (330)
+++|.+..++.....+++|+.|++++|.+.+
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 5555555554443445555555555555543
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=2.9e-11 Score=115.33 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=92.8
Q ss_pred ccCCCcEEeccCcccccCCCCC-CCC-----CcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhccc
Q 020161 22 IDLSNTVLDLTSFQLHDLDSVE-FPT-----NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95 (330)
Q Consensus 22 ~~~~l~~l~l~~~~l~~~~~~~-~~~-----~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 95 (330)
-.+..+.|++.++.+...+... ... .+..++++.+.+...+..+..++.|+.|++++|.+.... ..+..+
T Consensus 171 s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~l 246 (727)
T 4b8c_D 171 STPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNIS----ANIFKY 246 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCC----GGGGGC
T ss_pred cCCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCC----hhhcCC
Confidence 3455778888777776644211 111 233333344444444556889999999999999988532 234478
Q ss_pred CCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCc
Q 020161 96 AGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSN 173 (330)
Q Consensus 96 ~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~ 173 (330)
+.|++|+|++|.++.+|. +..+++|++|++++|.+..++.....+.+|+.|++++|.+..+ ..+..+++|+.|++++|
T Consensus 247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 999999999999998886 8899999999999999998877667789999999999998875 45889999999999999
Q ss_pred ccc
Q 020161 174 RLR 176 (330)
Q Consensus 174 ~~~ 176 (330)
.++
T Consensus 327 ~l~ 329 (727)
T 4b8c_D 327 PLE 329 (727)
T ss_dssp CCC
T ss_pred ccC
Confidence 885
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=1e-10 Score=90.96 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=78.7
Q ss_pred CcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEE
Q 020161 47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD 124 (330)
Q Consensus 47 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~ 124 (330)
..++++++++.++.+|..+ .++|++|++++|.+....+ ..|..+++|++|++++|.++.++. +..+++|++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEP---GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccCh---hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 3578999999999988755 3789999999999888633 356678899999999999988775 57788888888
Q ss_pred ccCCCCcCcccc-ccccCCCcEEEccCCCCC
Q 020161 125 VSFNEITSSHGL-SNVTDTLKELYVSKNEVP 154 (330)
Q Consensus 125 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 154 (330)
+++|.+..++.. ...+++|+.|++++|.+.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 888888776653 333566666666666543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=1.1e-10 Score=91.13 Aligned_cols=102 Identities=25% Similarity=0.329 Sum_probs=79.6
Q ss_pred cCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEc
Q 020161 48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDV 125 (330)
Q Consensus 48 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l 125 (330)
-+.++++++++..+|..+. ++|++|++++|.+.+.. ...|..+++|++|++++|.++.+|. +..+++|++|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLE---PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccC---HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 4789999999999988653 88999999999998863 3356678999999999999998876 577889999999
Q ss_pred cCCCCcCcccc-ccccCCCcEEEccCCCCC
Q 020161 126 SFNEITSSHGL-SNVTDTLKELYVSKNEVP 154 (330)
Q Consensus 126 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 154 (330)
++|.+..++.. ...+++|+.|++++|.+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99888876653 333566666666666554
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.20 E-value=5e-10 Score=99.27 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=66.7
Q ss_pred ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCe
Q 020161 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLED 276 (330)
Q Consensus 201 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~ 276 (330)
.+..+..++.+......+. ...+..|..|+.+.+..+ ++.+ .++.++.+|+.+++..+ ++.+ ..+.+|++|+.
T Consensus 271 ~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp TTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE
Confidence 3444444444443332211 123556777777777543 4444 35778889999998654 6555 56788899999
Q ss_pred EeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309 (330)
Q Consensus 277 L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n 309 (330)
+.+..+ ++.++ ..++..|++|+.+++..+
T Consensus 348 i~lp~~-l~~I~---~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 348 INFPLS-LRKIG---ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CCEEC---TTTBTTCTTCCEEEEEGG
T ss_pred EEECcc-ccEeh---HHHhhCCCCCCEEEECCC
Confidence 999876 77665 466888999999888654
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.14 E-value=1.2e-09 Score=96.81 Aligned_cols=275 Identities=15% Similarity=0.196 Sum_probs=175.5
Q ss_pred ccccccCCCcEEeccCcccccCCCCCC--CCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCc------------CC
Q 020161 18 QAVEIDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNL------------ID 82 (330)
Q Consensus 18 ~~~~~~~~l~~l~l~~~~l~~~~~~~~--~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~------------~~ 82 (330)
.++....+++.+.+.. .+..++...| +++|+.+++..+ ++.++. .|.++.+|+.+.+..+- ..
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 3445557788888864 3666665444 688999999754 666655 37778888777665320 00
Q ss_pred cc-cc-----ccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc------------------
Q 020161 83 DA-AI-----EPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL------------------ 136 (330)
Q Consensus 83 ~~-~~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~------------------ 136 (330)
.. .+ -...+|..+++|+.+.+..+. ..++. +..+.+|+.+.+..+ +..+...
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 00 00 012356778889998886542 33332 566677777766544 2222111
Q ss_pred -----ccccCCCcEEEccCCCCC-CcccccCCCCccEEEcCCccccc-cccccCCCCCcEEECcCCCccccccCCCCccc
Q 020161 137 -----SNVTDTLKELYVSKNEVP-KMEEIEHFHDLQILEFGSNRLRV-MENLQNLTNLQELWLGRNRIKVVNLCGLKCIK 209 (330)
Q Consensus 137 -----~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~ 209 (330)
...+..|+.+.+...... +...+..+..++.+.+..+.... ...+..+..++.+......+....+..+.+|+
T Consensus 221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT 300 (394)
T ss_dssp EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccc
Confidence 111234444444322110 11345666777777776654432 23466777888888777766666888999999
Q ss_pred EEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCC
Q 020161 210 KISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ 283 (330)
Q Consensus 210 ~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~ 283 (330)
.+.+..+ ++.. ..+..|.+|+.+.+.. .++.+ .+|.++.+|+.+.+..+ ++.+ ..+.+|++|+.+++..+
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~- 376 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR- 376 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-
Confidence 9998765 4433 4688999999999964 36655 46889999999999876 6655 67899999999999764
Q ss_pred CCchHHHHHHHhccccccchh
Q 020161 284 IESLESIVEAVAGSRETLTTI 304 (330)
Q Consensus 284 l~~~~~~~~~~~~~~~~L~~l 304 (330)
++.+ ...+.+|++|+.+
T Consensus 377 ~~~~----~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 LEQY----RYDFEDTTKFKWI 393 (394)
T ss_dssp GGGG----GGGBCTTCEEEEE
T ss_pred CEEh----hheecCCCCCcEE
Confidence 3433 2457888888764
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.6e-08 Score=89.50 Aligned_cols=104 Identities=14% Similarity=0.320 Sum_probs=50.7
Q ss_pred ccCCCCcccEEECCCCccc-cccccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCC
Q 020161 201 NLCGLKCIKKISLQSNRLT-SMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLE 275 (330)
Q Consensus 201 ~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~ 275 (330)
.|..+..|+.+.+..+..+ +...+..|..|+.+.+. +.++.+ ..|.++.+|+.+.+..+ ++.+ ..+.+|.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 4555555555555433211 11234555555555553 223333 23555556666666433 3333 3455556666
Q ss_pred eEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161 276 DLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310 (330)
Q Consensus 276 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 310 (330)
.+.+..+ ++.++ ..++.+|.+|+.+++.++.
T Consensus 338 ~i~ip~s-v~~I~---~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS-VTKIP---ESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT-CCBCC---GGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc-cCEEh---HhHhhCCCCCCEEEECCce
Confidence 6666433 44443 2445556666666555543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=1e-09 Score=95.48 Aligned_cols=106 Identities=23% Similarity=0.166 Sum_probs=88.2
Q ss_pred cEEeccCc-ccccCCCCCCCCCcCEEecCC-CCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161 27 TVLDLTSF-QLHDLDSVEFPTNLTELDLTA-NRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103 (330)
Q Consensus 27 ~~l~l~~~-~l~~~~~~~~~~~L~~L~l~~-~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 103 (330)
..++++++ .+..+|.+...++|++|++++ |.+..++. .|.++++|++|++++|.+.+.. ...|..+++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA---PDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC---TTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC---HHHhcCCcCCCEEeC
Confidence 56788888 899998855667899999996 99998885 5899999999999999999863 345678999999999
Q ss_pred cCCcCcCCCC-CCCCCcccEEEccCCCCcCccc
Q 020161 104 RDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG 135 (330)
Q Consensus 104 ~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 135 (330)
++|.++.+|. +.....|++|++.+|.+.....
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 9999999885 3333349999999999886544
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=2.4e-09 Score=93.15 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=87.5
Q ss_pred CEEecCCC-CCCChhhhhhcCCCCCEEeCCC-CcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEE
Q 020161 49 TELDLTAN-RLTSLDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD 124 (330)
Q Consensus 49 ~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~ 124 (330)
..++++++ +++.+|. +..+++|+.|++++ |.+... ....|..+++|++|+|++|.++++++ +..+++|++|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc---ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 45788998 9999999 99999999999996 999886 33457789999999999999998765 68899999999
Q ss_pred ccCCCCcCccccccccCCCcEEEccCCCCCC
Q 020161 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155 (330)
Q Consensus 125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 155 (330)
+++|.+..++........|+.|++.+|.+.-
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999999888655544449999999988764
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.89 E-value=3.5e-07 Score=80.85 Aligned_cols=271 Identities=12% Similarity=0.224 Sum_probs=169.2
Q ss_pred CCCcEEeccCcccccCCCCCC--CCCcCEEecCCC---CCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCC
Q 020161 24 LSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTAN---RLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97 (330)
Q Consensus 24 ~~l~~l~l~~~~l~~~~~~~~--~~~L~~L~l~~~---~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 97 (330)
..++.+.+... +..++...| +.+|+.+.+..+ .++.+.. .|.++.+|+.+.+..+ +... ...+|..+.+
T Consensus 64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I---~~~aF~~c~~ 138 (394)
T 4gt6_A 64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI---DSEAFHHCEE 138 (394)
T ss_dssp SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE---CTTTTTTCTT
T ss_pred CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee---hhhhhhhhcc
Confidence 34778887653 666654444 689999998765 4666665 3788888988877664 3332 2345677888
Q ss_pred CcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCC-cccccCCCCccEEEcCCc-
Q 020161 98 LEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSN- 173 (330)
Q Consensus 98 L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~- 173 (330)
|+.+.+... +..+.. +..+..|+.+.+..+ +..+....+....|+.+.+..+...- ...+..+..++.......
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSS
T ss_pred cccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccc
Confidence 888888643 333332 666777888777654 33333333344556666665432111 123334444433332211
Q ss_pred -----------------------------------ccc--ccccccCCCCCcEEECcCCC--ccccccCCCCcccEEECC
Q 020161 174 -----------------------------------RLR--VMENLQNLTNLQELWLGRNR--IKVVNLCGLKCIKKISLQ 214 (330)
Q Consensus 174 -----------------------------------~~~--~~~~l~~~~~L~~L~l~~~~--i~~~~~~~~~~L~~L~l~ 214 (330)
.+. ....+..+..|+.+.+.... +....|..+..|+.+.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC
Confidence 011 11246678889999987653 344478889999999996
Q ss_pred CCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchH
Q 020161 215 SNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLE 288 (330)
Q Consensus 215 ~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~ 288 (330)
. .++.. ..+..|.+|+.+.+..+ ++.+ .+|.++.+|+.+.+..+ ++.+ ..+.+|++|+.+++.++...
T Consensus 297 ~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--- 370 (394)
T 4gt6_A 297 S-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--- 370 (394)
T ss_dssp T-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---
T ss_pred C-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---
Confidence 4 44444 46889999999999753 5555 46889999999999654 6655 67899999999999987522
Q ss_pred HHHHHHhccccccchhhccCCC
Q 020161 289 SIVEAVAGSRETLTTIYLENNP 310 (330)
Q Consensus 289 ~~~~~~~~~~~~L~~l~l~~n~ 310 (330)
...+..|.+|+.+.+..+.
T Consensus 371 ---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 371 ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp ---HHTCBCCCCC---------
T ss_pred ---hhhhhccCCCCEEEeCCCC
Confidence 2346778889988876554
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=3.3e-09 Score=83.56 Aligned_cols=105 Identities=23% Similarity=0.151 Sum_probs=51.3
Q ss_pred ccCCCCCcEEECcCC-Ccccc-------ccCCCCcccEEECCCCcccccc------ccccccccceEEccCCCCCCC---
Q 020161 181 LQNLTNLQELWLGRN-RIKVV-------NLCGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGISKM--- 243 (330)
Q Consensus 181 l~~~~~L~~L~l~~~-~i~~~-------~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~L~~l~l~~~~~~~~--- 243 (330)
+...+.|++|++++| .+.+. .+...++|++|++++|.++... .+...+.|++|++++|.+++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445666777777776 66543 2344455666666666554431 223334455555555554431
Q ss_pred ---cCCCCCCCCCEEEc--CCCCCCCc------cccccCCCCCeEeCCCCCCC
Q 020161 244 ---EGLSTLVNLHVLDV--SSNKLTLV------DDIQNLSRLEDLWLNDNQIE 285 (330)
Q Consensus 244 ---~~~~~~~~L~~L~l--~~n~~~~~------~~~~~~~~L~~L~l~~n~l~ 285 (330)
..+...++|++|++ ++|.+++. ..+...+.|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 23344444555555 44444432 22333344555555554444
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=3.1e-06 Score=74.30 Aligned_cols=132 Identities=15% Similarity=0.215 Sum_probs=75.9
Q ss_pred cCCCCCcEEECcCCC--ccccccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEE
Q 020161 182 QNLTNLQELWLGRNR--IKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVL 255 (330)
Q Consensus 182 ~~~~~L~~L~l~~~~--i~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L 255 (330)
..+..++.+.+..+- +....+..+..|+.+.+..+ ++.. ..+..|..|+.+.+..+ +..+ ..+.++.+|+.+
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 344455555554431 22224556666666666543 3322 34556667777666432 3333 346677777777
Q ss_pred EcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccccccc
Q 020161 256 DVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYP 320 (330)
Q Consensus 256 ~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 320 (330)
.+.++.++.+ ..+.+|.+|+.+.+..+ ++.|+ ..++.+|.+|+.+.+..+ ++.+...+|.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~---~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ---VYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC---TTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEH---HHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 7777777655 55677777777777653 55554 355777777777777443 4444444443
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=6e-09 Score=82.06 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=91.6
Q ss_pred ccCCCCcccEEECCCC-ccccc------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc--
Q 020161 201 NLCGLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV-- 265 (330)
Q Consensus 201 ~~~~~~~L~~L~l~~~-~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~-- 265 (330)
.+...+.|++|++++| .++.. ..+...++|++|++++|.+++. ..+...++|++|++++|.+++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4667789999999999 88765 2456778999999999999762 3456678899999999999864
Q ss_pred ----cccccCCCCCeEeC--CCCCCCchH-HHHHHHhccccccchhhccCCCcccc
Q 020161 266 ----DDIQNLSRLEDLWL--NDNQIESLE-SIVEAVAGSRETLTTIYLENNPCKIF 314 (330)
Q Consensus 266 ----~~~~~~~~L~~L~l--~~n~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~ 314 (330)
..+...+.|++|++ ++|.+++.+ ..+..++..+++|+.|++++|.+...
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 45777889999999 889999642 23456677889999999999997654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=2.7e-08 Score=86.61 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=111.3
Q ss_pred CcccEEEccCCCCcC-c--------cccccccCCCcEEEccCCCCCC----------c-ccccCCCCccEEEcCCcc-cc
Q 020161 118 KKLSVFDVSFNEITS-S--------HGLSNVTDTLKELYVSKNEVPK----------M-EEIEHFHDLQILEFGSNR-LR 176 (330)
Q Consensus 118 ~~L~~L~l~~~~~~~-~--------~~~~~~~~~L~~L~l~~~~~~~----------~-~~~~~~~~L~~L~l~~~~-~~ 176 (330)
..++.|.+....+.+ . ......+++|+.|.+....... + ..+..+++|+.|.++++. +.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 456677766554331 0 1112236789999886543211 1 224667889999987763 33
Q ss_pred ccccccCCCCCcEEECcCCCcccc-----ccCCCCcccEEECCC--Cccc------cc-ccc--ccccccceEEccCCCC
Q 020161 177 VMENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQS--NRLT------SM-KGF--EECIALEELYLSHNGI 240 (330)
Q Consensus 177 ~~~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~~--~~l~------~~-~~~--~~~~~L~~l~l~~~~~ 240 (330)
.. .+. .++|+.|++..+.+... ....+++|+.|+++. +... .. +.+ ..+++|+.|++.+|.+
T Consensus 187 l~-~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IG-KKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CC-SCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ec-ccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 22 233 67889999888877654 123678888888753 1111 11 112 2468888888888887
Q ss_pred CCC-----cCCCCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161 241 SKM-----EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309 (330)
Q Consensus 241 ~~~-----~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n 309 (330)
++. .....+++|++|+++.|.+++. ..+..+++|+.|++++|.+++. .+..+...+ ...++++++
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~--~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE--MKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH--HHHHHHHHC--CSEEECCSB
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH--HHHHHHHHc--CCEEEecCC
Confidence 641 1123567888888888888764 2335678888888888887742 222221112 344667766
Q ss_pred C
Q 020161 310 P 310 (330)
Q Consensus 310 ~ 310 (330)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 5
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.60 E-value=4.6e-06 Score=73.22 Aligned_cols=261 Identities=18% Similarity=0.216 Sum_probs=163.1
Q ss_pred CCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccE
Q 020161 45 PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSV 122 (330)
Q Consensus 45 ~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~ 122 (330)
..+|+.+.+.. +++.++.. |.+|.+|+.+.+..+ ++.+ .-.+|..+ +|+.+.+.. .++.+.. .....+|+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I---g~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSI---GDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEE---CTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEe---chhhhcCC-CCceEECCc-eeeEeccceeccCCccc
Confidence 46788888864 46777664 888899999998754 4443 22345555 677776654 2444433 222347888
Q ss_pred EEccCCCCcCccccccccCCCcEEEccCCCC-CCcccccCCCCccEEEcCCcccc--------------ccccccCCCCC
Q 020161 123 FDVSFNEITSSHGLSNVTDTLKELYVSKNEV-PKMEEIEHFHDLQILEFGSNRLR--------------VMENLQNLTNL 187 (330)
Q Consensus 123 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~--------------~~~~l~~~~~L 187 (330)
+.+..+ ...+....+....+..+.+..+.. -+...+..+..++.+.+...... ....+..+..+
T Consensus 118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp EECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred ccCCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 877654 222332233334555555544321 11245667777777777654321 11223445556
Q ss_pred cEEECcCCC--ccccccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCC
Q 020161 188 QELWLGRNR--IKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNK 261 (330)
Q Consensus 188 ~~L~l~~~~--i~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~ 261 (330)
..+.+.... +....+..+..++.+.+..+ ++.. ..+..|..|+.+.+..+ ++.+ ..+..+.+|+.+.+..+
T Consensus 197 ~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 197 TEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp SEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred cccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence 666655432 22336677788888888654 2222 45678899999988654 5554 35778889999999654
Q ss_pred CCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccccccc
Q 020161 262 LTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYP 320 (330)
Q Consensus 262 ~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 320 (330)
++.+ ..+..|++|+.+.+.++.++.++ ..++.+|.+|+.+.+..+ ++.+...+|.
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~---~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIETLE---PRVFMDCVKLSSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCCEEC---TTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ceeccccccccccccccccccccccceeh---hhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence 5444 56889999999999999888776 467899999999998644 5555444443
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=9.6e-08 Score=83.16 Aligned_cols=166 Identities=16% Similarity=0.159 Sum_probs=92.0
Q ss_pred CCCCcccEEEccCCCCc----------CccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccc--cccc-
Q 020161 115 SIFKKLSVFDVSFNEIT----------SSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV--MENL- 181 (330)
Q Consensus 115 ~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~l- 181 (330)
..+++|+.|.+...... .+......+++|+.|.+.++.-..+..+ ..++|+.|++..+.+.. ...+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHH
Confidence 34567777777554221 1112223367788888777631122223 26777888877766531 1222
Q ss_pred -cCCCCCcEEECcC--CC------cccc----ccCCCCcccEEECCCCccccc-----cccccccccceEEccCCCCCCC
Q 020161 182 -QNLTNLQELWLGR--NR------IKVV----NLCGLKCIKKISLQSNRLTSM-----KGFEECIALEELYLSHNGISKM 243 (330)
Q Consensus 182 -~~~~~L~~L~l~~--~~------i~~~----~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~L~~l~l~~~~~~~~ 243 (330)
..+++|+.|+++. +. +... ....+++|+.|++.+|.++.. .....++.|+.|+++.|.+++.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 2567777777642 11 1111 112467788888877766542 1113467788888877777652
Q ss_pred ------cCCCCCCCCCEEEcCCCCCCCc--ccccc-CCCCCeEeCCCCC
Q 020161 244 ------EGLSTLVNLHVLDVSSNKLTLV--DDIQN-LSRLEDLWLNDNQ 283 (330)
Q Consensus 244 ------~~~~~~~~L~~L~l~~n~~~~~--~~~~~-~~~L~~L~l~~n~ 283 (330)
..+..+++|+.|++++|.+++. ..+.. + ...++++.++
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2334567788888887777654 22222 2 3456777665
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=2.1e-08 Score=77.19 Aligned_cols=98 Identities=8% Similarity=0.135 Sum_probs=60.3
Q ss_pred cccceEEccCCCCCC--CcCCCCCCCCCEEEcCCCC-CCCc--ccccc----CCCCCeEeCCCCC-CCchHHHHHHHhcc
Q 020161 228 IALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNK-LTLV--DDIQN----LSRLEDLWLNDNQ-IESLESIVEAVAGS 297 (330)
Q Consensus 228 ~~L~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~n~-~~~~--~~~~~----~~~L~~L~l~~n~-l~~~~~~~~~~~~~ 297 (330)
..|+.|++++|.+++ +..+.++++|++|++++|. +++. ..+.. +++|++|++++|. |++ ..+ ..+.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl-~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGI-IALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHH-HHGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHH-HHHhc
Confidence 456777777777654 3556677778888887774 6654 33433 3467888888875 664 222 33456
Q ss_pred ccccchhhccCCC-ccccc-cccccccCCCCCC
Q 020161 298 RETLTTIYLENNP-CKIFK-LFCYPQTNFPKYT 328 (330)
Q Consensus 298 ~~~L~~l~l~~n~-~~~~~-~~~~~~~~~p~~~ 328 (330)
|++|+.|++++|+ +++.. .....+.++|..+
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 7888888888877 33322 2444555666654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=2.4e-07 Score=76.70 Aligned_cols=81 Identities=26% Similarity=0.456 Sum_probs=64.2
Q ss_pred ccccccceEEccCCCCCCCcCCC----CCCCCCEEEcCCCCCCCccccccCC--CCCeEeCCCCCCCc----hHHHHHHH
Q 020161 225 EECIALEELYLSHNGISKMEGLS----TLVNLHVLDVSSNKLTLVDDIQNLS--RLEDLWLNDNQIES----LESIVEAV 294 (330)
Q Consensus 225 ~~~~~L~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~~~--~L~~L~l~~n~l~~----~~~~~~~~ 294 (330)
..++.|+.|++++|.+++++.+. .+++|+.|+|++|+++++..+..++ +|++|++++|++.. .+.....+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 45788999999999998876544 6889999999999999885555555 89999999999874 23445567
Q ss_pred hccccccchhh
Q 020161 295 AGSRETLTTIY 305 (330)
Q Consensus 295 ~~~~~~L~~l~ 305 (330)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 88889999865
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=2e-07 Score=71.82 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=65.8
Q ss_pred cccEEECCCCccccc--cccccccccceEEccCCC-CCC--CcCCCCC----CCCCEEEcCCCC-CCCc--cccccCCCC
Q 020161 207 CIKKISLQSNRLTSM--KGFEECIALEELYLSHNG-ISK--MEGLSTL----VNLHVLDVSSNK-LTLV--DDIQNLSRL 274 (330)
Q Consensus 207 ~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~-~~~--~~~~~~~----~~L~~L~l~~n~-~~~~--~~~~~~~~L 274 (330)
.|+.|+++++.++.. ..+..|+.|+.|++++|. +++ +..+..+ ++|++|++++|. +|+. ..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 466666666665543 345678888888888885 554 2334443 479999999984 8865 567789999
Q ss_pred CeEeCCCCC-CCchHHHHHHHhccccccch
Q 020161 275 EDLWLNDNQ-IESLESIVEAVAGSRETLTT 303 (330)
Q Consensus 275 ~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~ 303 (330)
+.|++++|+ +++.+-....+...+|+++.
T Consensus 142 ~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 999999997 66543334445556676653
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=8.9e-06 Score=67.30 Aligned_cols=76 Identities=21% Similarity=0.220 Sum_probs=57.9
Q ss_pred CCCCcccEEECCCCcccccccc----ccccccceEEccCCCCCCCcCCCCCC--CCCEEEcCCCCCCCc---------cc
Q 020161 203 CGLKCIKKISLQSNRLTSMKGF----EECIALEELYLSHNGISKMEGLSTLV--NLHVLDVSSNKLTLV---------DD 267 (330)
Q Consensus 203 ~~~~~L~~L~l~~~~l~~~~~~----~~~~~L~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~---------~~ 267 (330)
..+++|+.|++++|.+++.+.+ ..+++|+.|++++|.++++..+..+. +|++|++++|.+.+. ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3467788888888888876433 47889999999999988865444433 899999999998752 24
Q ss_pred cccCCCCCeEe
Q 020161 268 IQNLSRLEDLW 278 (330)
Q Consensus 268 ~~~~~~L~~L~ 278 (330)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67789998877
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.93 E-value=6.5e-06 Score=64.55 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=63.2
Q ss_pred cCCCCCcEEECcCC-Ccccc-------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC----
Q 020161 182 QNLTNLQELWLGRN-RIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM---- 243 (330)
Q Consensus 182 ~~~~~L~~L~l~~~-~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~---- 243 (330)
.+.+.|++|+++++ .+.+. .+.....|+.|++++|.++.. ..+.....|+.|+++.|.|++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45567888888774 66654 355566777777777777654 1244556677777777776652
Q ss_pred --cCCCCCCCCCEEEcCCC---CCCCc------cccccCCCCCeEeCCCCCCC
Q 020161 244 --EGLSTLVNLHVLDVSSN---KLTLV------DDIQNLSRLEDLWLNDNQIE 285 (330)
Q Consensus 244 --~~~~~~~~L~~L~l~~n---~~~~~------~~~~~~~~L~~L~l~~n~l~ 285 (330)
+.+.....|++|+++++ .+... ..+...+.|..|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34555666777777654 23321 33455566666666665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.78 E-value=2.8e-05 Score=60.99 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=84.3
Q ss_pred cCCCCcccEEECCCC-ccccc------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc---
Q 020161 202 LCGLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV--- 265 (330)
Q Consensus 202 ~~~~~~L~~L~l~~~-~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~--- 265 (330)
....+.|+.|+++++ .+... ..+.....|+.|++++|.+++. +.+.....|+.|+|+.|.|++.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455678999999985 77654 3466778999999999999863 3456678999999999999866
Q ss_pred ---cccccCCCCCeEeCCCC---CCCch-HHHHHHHhccccccchhhccCCCcc
Q 020161 266 ---DDIQNLSRLEDLWLNDN---QIESL-ESIVEAVAGSRETLTTIYLENNPCK 312 (330)
Q Consensus 266 ---~~~~~~~~L~~L~l~~n---~l~~~-~~~~~~~~~~~~~L~~l~l~~n~~~ 312 (330)
..+...+.|++|+|++| .+.+- ...+..++...++|+.|+++.|...
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 45666778999999876 44532 1245667788899999999887754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.56 E-value=0.00017 Score=52.72 Aligned_cols=57 Identities=33% Similarity=0.401 Sum_probs=49.1
Q ss_pred CcEEeccCcccc--cCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCc
Q 020161 26 NTVLDLTSFQLH--DLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83 (330)
Q Consensus 26 l~~l~l~~~~l~--~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~ 83 (330)
..+++++++.++ .+|. .+++++++|+|++|.|+.++.. |..+++|+.|++++|.+.-
T Consensus 10 ~~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 10 GTLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TTEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 357899999998 8885 5788999999999999999875 7889999999999997764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.00049 Score=50.23 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=42.4
Q ss_pred ceEEccCCCCC--CCcCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCC
Q 020161 231 EELYLSHNGIS--KMEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIE 285 (330)
Q Consensus 231 ~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~ 285 (330)
..++.++++++ .++.- -.+++++|+|++|+++.+ ..+..+++|+.|+|.+|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777888877 66621 224799999999999988 56788889999999999887
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.97 E-value=10 Score=25.50 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=20.4
Q ss_pred CCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161 58 LTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105 (330)
Q Consensus 58 i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (330)
++.+... |.+|..|+.+.+..+ ++.+ .-.+|..|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~I---g~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLL---YDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCC---CTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheE---cHHHHhccCCccEEEEcC
Confidence 3444332 555556666555543 2222 122445555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.33 E-value=6.6 Score=26.53 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCC
Q 020161 245 GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDN 282 (330)
Q Consensus 245 ~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n 282 (330)
.|.++.+|+.+.+-.+ ++.+ ..+.+|.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4666777777777654 3333 55667777777777653
Done!