BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020162
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0G5|NSRP1_HUMAN Nuclear speckle splicing regulatory protein 1 OS=Homo sapiens
GN=NSRP1 PE=1 SV=1
Length = 558
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 9/194 (4%)
Query: 3 KYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEE 62
+YGL L P KK P L P FG D D + V + R+A K +A+K+ +
Sbjct: 7 QYGLIL---P---KKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKL 60
Query: 63 QQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHDI 120
+ +KALAED V++YD YDEM++K K+ D +PKYIH L+ + RK+E +
Sbjct: 61 EIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEK 120
Query: 121 IYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDV 180
E+K+ +ER E F DKE FVT AYKKKL+E+ + + DVTK+ D+
Sbjct: 121 RMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDL 180
Query: 181 SDFYFNLHKNVAFG 194
S FY +L N A G
Sbjct: 181 SGFYRHL-LNQAVG 193
>sp|Q2KIC0|NSRP1_BOVIN Nuclear speckle splicing regulatory protein 1 OS=Bos taurus
GN=NSRP1 PE=2 SV=1
Length = 559
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 10/195 (5%)
Query: 3 KYGLQLRVNPSQQKKQPTNKPPLPPPKAFG-LDDDGGGDDDVEGEISRQAIKNRALKEIE 61
+YGL L KK P L P FG DD + V + R+A K +A+K+ +
Sbjct: 7 QYGLIL------PKKAQQLHPVLQKPSVFGNDSDDDDDETSVSESLQREAAKKQAMKQTK 60
Query: 62 EQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREHD 119
+ +KALAED V++YD YDEM++K K+ D +PKYIH L+ + RK+E +
Sbjct: 61 LEIQKALAEDSTVYEYDSIYDEMQKKKEESNPKLLLGKDRKPKYIHNLLKAVEIRKKEQE 120
Query: 120 IIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTD 179
E+K+ +ER E F DKE FVT AYKKKL+E+ + + R DVTK+ D
Sbjct: 121 KRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEERERRAAALEARLDVTKQRD 180
Query: 180 VSDFYFNLHKNVAFG 194
+S FY +L N A G
Sbjct: 181 LSGFYRHL-LNQAVG 194
>sp|Q4FZU3|NSRP1_RAT Nuclear speckle splicing regulatory protein 1 OS=Rattus norvegicus
GN=Nsrp1 PE=2 SV=1
Length = 547
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 14/196 (7%)
Query: 3 KYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDD--VEGEISRQAIKNRALKEI 60
+YGL L +K QP N+ L P FG D D DD+ V + R+A K +A+++
Sbjct: 7 QYGLIL-----PKKTQPLNRV-LQKPSVFGNDSD---DDEASVSESLQREAAKKQAMRQT 57
Query: 61 EEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREH 118
+ + +KALAED V++YD YDEM++K K+ D +PKYIH L+ + RK+E
Sbjct: 58 KLEIQKALAEDSTVYEYDSIYDEMQKKKEENNPKLLMGKDRKPKYIHNLLKAVEIRKKEQ 117
Query: 119 DIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKT 178
+ E+K+ +ER E F DKE FVT AYKKKLEE+ + + R DVTK+
Sbjct: 118 EKRMEKKIQREREMEKGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEARLDVTKQK 177
Query: 179 DVSDFYFNLHKNVAFG 194
D+S FY +L N A G
Sbjct: 178 DLSGFYRHL-LNQAVG 192
>sp|Q5NCR9|NSRP1_MOUSE Nuclear speckle splicing regulatory protein 1 OS=Mus musculus
GN=Nsrp1 PE=1 SV=1
Length = 542
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 157/335 (46%), Gaps = 53/335 (15%)
Query: 3 KYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDD--VEGEISRQAIKNRALKEI 60
+YGL L +K QP ++ L P FG D D DD+ V + R+A K +A+K+
Sbjct: 7 QYGLIL-----PKKTQPLHRV-LQKPSVFGSDSD---DDETSVSESLQREAAKKQAMKQT 57
Query: 61 EEQQRKALAEDPNVFDYDGCYDEMKQKSVRR--KVQDRADTQPKYIHKLIHKADERKREH 118
+ + +KALAED V++YD YDEM++K K+ D +PKYIH L+ + RK+E
Sbjct: 58 KLEIQKALAEDSTVYEYDSVYDEMQKKKEENNPKLLPGKDRKPKYIHNLLKAVEIRKKEQ 117
Query: 119 DIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKT 178
+ E+K+ +ER E+ F DKE FVT AYKKKLEE+ + + DVTK+
Sbjct: 118 EKRMEKKIQREREMENGEFDDKEAFVTSAYKKKLEERAEEEEREKRAAALEAHLDVTKQK 177
Query: 179 DVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPE 238
D+S FY +L N A G E P K + A +
Sbjct: 178 DLSGFYRHL-LNQAVG-------------EEAAP--------------KSSFREARTVIK 209
Query: 239 KERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQE-------- 290
+E+L Y + + SR + ++ R + +E NP +DR D S ++
Sbjct: 210 EEKLRGYPDETNSESRPPQ----QSCVLQRGAQEAEENPDADREFDDESSEDGEKRDHKV 265
Query: 291 KPSVEKPSDGQPKPDHHKRGQDALAAAKERFMARK 325
K E P HHK + ++++ER + K
Sbjct: 266 KSRGEDTGASMKHPKHHKNRAHSRSSSEERGLGTK 300
>sp|Q568R1|NSRP1_DANRE Nuclear speckle splicing regulatory protein 1 OS=Danio rerio
GN=nsrp1 PE=1 SV=2
Length = 516
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 149/301 (49%), Gaps = 31/301 (10%)
Query: 4 YGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEEQ 63
YGL L P +K+ + PL P FG DD + V + ++AIK + +K+ +
Sbjct: 8 YGLIL---P---QKRASKSAPLARPSVFG--DDSDDETSVGESLQKEAIKKKMMKQTRLE 59
Query: 64 QRKALAEDPNVFDYDGCYDEMKQKSV--RRKVQDRADTQPKYIHKLIHKADERKREHDII 121
+KAL ED V++YD YD+++++ + +K+ D +PKYI++L+ +ERK+E +
Sbjct: 60 MQKALEEDSTVYEYDNVYDDIQKQRLESNKKLLGGEDKKPKYINQLLRAVEERKKEQERR 119
Query: 122 YERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQ----RWAREQALRDLRDERDDVTKK 177
ERK+ KER E FADKE FVT AY++KL+E+Q R RE L D V K+
Sbjct: 120 DERKIQKEREAEGEKFADKEAFVTSAYRQKLKERQEELEREKREAELEAALD----VKKQ 175
Query: 178 TDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTP 237
D+S FY + N G + + D+ A+ EK A +R P E T
Sbjct: 176 KDLSGFYRHFL-NQTVG----EEVVPDRSAQSE--EKATSSAAAERSPSPE------STA 222
Query: 238 EKERLSAYSNSASESSRGKEGHQAETSTSSRSIESSESNPASDRPVSDSSEQEKPSVEKP 297
+ A S+S + K T+ + + + +P SD D E+E+ +++
Sbjct: 223 NRRESEAESHSDDDQVDVKPAFSKTTANNHAKRQYRQKSPLSDSDDGDERERERKEIKEK 282
Query: 298 S 298
S
Sbjct: 283 S 283
>sp|A8XXB0|NSRP1_CAEBR Nuclear speckle splicing regulatory protein 1 homolog
OS=Caenorhabditis briggsae GN=ccdc-55 PE=3 SV=1
Length = 393
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 3 KYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEE 62
++GL ++ QK++P + P+ FG DDD S I R K E
Sbjct: 7 RFGLIVK-----QKEEP-KRAPVRVSSVFGDDDDDEAPATATNTSSASVI--RIQKAAER 58
Query: 63 QQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRA---DTQPKYIHKLIHKADERKREHD 119
+ +KA AEDP +FDYDG YDE++ +K + R + + KY +I R+ E
Sbjct: 59 EHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNKESKYAEAIIKAHARRQLEQF 118
Query: 120 IIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRW----AREQALRDL 167
ER+ KER KE F DKE FVTGAY+K+ EE +++ A E A D+
Sbjct: 119 SREERQQIKEREKEAGEFDDKEVFVTGAYRKQQEEVKKYREQEAEEAAFNDM 170
>sp|Q09252|NSRP1_CAEEL Nuclear speckle splicing regulatory protein 1 homolog
OS=Caenorhabditis elegans GN=ccdc-55 PE=2 SV=1
Length = 392
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 55 RALKEIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRRKVQDRA---DTQPKYIHKLIHKA 111
R K E + +KA AEDP +FDYDG YDE++ +K + R + + KY +I
Sbjct: 51 RVQKAAEREHQKAEAEDPTIFDYDGNYDEIQAIKNEKKEEARKADKNRESKYAENIIKAH 110
Query: 112 DERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEE----QQRWAREQALRDL 167
R+ E ER+ +ER KE F DKE FVTGAY+K+ EE +++ A E A D+
Sbjct: 111 ARRQLEQFSREERQQLREREKEGDEFDDKEVFVTGAYRKQQEEVKKHREQEAEEAAFNDM 170
>sp|O14009|NSRP1_SCHPO Nuclear speckle splicing regulatory protein 1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC29A4.06c PE=3 SV=1
Length = 355
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 71 DPNVFDYDGCYDEMK---QKSVRRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLT 127
D +++ +D YD MK ++ + K + D +PKY+ LI A +RKR+
Sbjct: 63 DASIYGFDEFYDSMKSAEREQMELKRLESKDRRPKYMENLIESAKKRKRDL----LLARE 118
Query: 128 KERSKEDHLFAD--KEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDVSDFYF 185
+ K++ L D EKFVT +YKK EE Q+ + R DE+ T + DFY
Sbjct: 119 RALLKKNELEGDDATEKFVTSSYKKHREEVQKAIED---RKEEDEKSITDTTTGMKDFYA 175
Query: 186 NL 187
++
Sbjct: 176 SM 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.125 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,597,911
Number of Sequences: 539616
Number of extensions: 5952718
Number of successful extensions: 33914
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 1729
Number of HSP's that attempted gapping in prelim test: 26682
Number of HSP's gapped (non-prelim): 6085
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)