Query 020162
Match_columns 330
No_of_seqs 143 out of 183
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:31:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2117 Uncharacterized conser 100.0 6.7E-60 1.5E-64 456.6 16.9 270 2-310 6-285 (379)
2 PF09745 DUF2040: Coiled-coil 100.0 6.7E-43 1.5E-47 297.6 11.7 122 59-180 2-127 (127)
3 PF07946 DUF1682: Protein of u 33.2 1.3E+02 0.0028 29.5 6.5 55 98-166 262-318 (321)
4 KOG2002 TPR-containing nuclear 27.5 5.7E+02 0.012 29.8 10.9 18 100-117 811-828 (1018)
5 PF04065 Not3: Not1 N-terminal 24.3 2.3E+02 0.005 27.2 6.4 85 58-165 4-89 (233)
6 PF15473 PCNP: PEST, proteolyt 16.0 75 0.0016 29.0 1.1 9 26-34 91-99 (150)
7 KOG2072 Translation initiation 12.8 1.2E+03 0.025 27.2 9.2 25 146-170 802-826 (988)
8 PF13256 DUF4047: Domain of un 10.8 4E+02 0.0087 23.7 4.1 32 98-129 23-54 (125)
9 KOG1029 Endocytic adaptor prot 10.1 7.6E+02 0.016 28.6 6.7 71 98-172 317-390 (1118)
10 KOG1363 Predicted regulator of 9.6 9.4E+02 0.02 25.4 6.9 55 104-171 307-361 (460)
No 1
>KOG2117 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.7e-60 Score=456.56 Aligned_cols=270 Identities=41% Similarity=0.647 Sum_probs=229.3
Q ss_pred cccccccccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccchhh
Q 020162 2 SKYGLQLRVNPSQQKKQPTNKPPLPPPKAFGLDDDGGGDDDVEGEISRQAIKNRALKEIEEQQRKALAEDPNVFDYDGCY 81 (330)
Q Consensus 2 KkYGLil~kkp~~~Kk~~~~Kp~~~~~svF~~~dDsDee~dv~~~i~r~a~k~k~~kk~~~~~~kAleeDpsVfdYD~vY 81 (330)
.+|||+|++ |+.++. |++++++||| | |++.+|..++++++++.++++.++.+|+|||++|||||+||+||
T Consensus 6 ~q~gl~~~K-----K~~~~~-~~lr~ssvfg--d--~~~~~v~~e~~r~ask~~~~k~ae~qhqKAlaEDptif~YDe~Y 75 (379)
T KOG2117|consen 6 RQYGLNLQK-----KKKPSE-PPLRIASVFG--D--DDDSSVEKEISRQASKTKSQKTAERQHQKALAEDPTIFGYDEVY 75 (379)
T ss_pred ccccccccc-----cccCCC-CCcCCCcccC--C--ccccchhhhccccchHHHHHHHHHHHHHHhhhcCCchhccchhh
Confidence 379999973 345556 8999999999 5 36788999999999999999999999999999999999999999
Q ss_pred hhhhhhh--hhhhhhhhccc-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCCccceecHHHHHHHHHHHHH
Q 020162 82 DEMKQKS--VRRKVQDRADT-QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRW 158 (330)
Q Consensus 82 D~mk~k~--~~~k~~~~~~r-KPKYI~~LlkaAe~RKrE~e~~~ERkiqKEREaEgdeF~DKE~FVTsAYKkKLEE~rk~ 158 (330)
|+|+.+. ..+.+.....+ +||||+|||++|++|++|+++++||+|+||||+|||+|.|||+|||+|||++|||+++|
T Consensus 76 Ddmq~kk~e~~~~~~~~~~r~kPkYi~nLie~aerRkkE~e~r~ERkl~KeREkEg~~fdDkekfVTgAYKKklEE~~k~ 155 (379)
T KOG2117|consen 76 DDMQSKKREQLPRLRLREKRRKPKYIENLIEAAERRKKEQELRYERKLLKEREKEGDEFDDKEKFVTGAYKKKLEEVKKW 155 (379)
T ss_pred HHHHHHHhhhhHhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHH
Confidence 9997543 33555555555 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhhhhccCCCchhHHHHHHHhhhhcCCCCCCCcchhhhhhccCchhhhhhhhhhcCcchHHHhhhcCChh
Q 020162 159 AREQALRDLRDERDDVTKKTDVSDFYFNLHKNVAFGGGNKDSMNLDKKAEVTKPEKEVDKKAEQRRPEKEEIQRAADTPE 238 (330)
Q Consensus 159 eEeEr~~e~~Ee~~dvtKq~dLsgFYr~LlkN~a~G~~~~~~~~~~~~~E~~~~~~~~~~~~e~r~~e~~~~~~~~~~~~ 238 (330)
+|+|++++++++..||||++||+|||+||+.| ||...++.....+++|. +.|.++++.|
T Consensus 156 ~e~Ek~~e~~e~~ddVTKqKDls~fy~~~~~n--~g~~q~~v~~~q~~keq----r~v~k~e~~~--------------- 214 (379)
T KOG2117|consen 156 LEQEKEEEALEATDDVTKQKDLSGFYRHLGEN--FGAAQAEVEKVQRLKEQ----RKVIKLEEKR--------------- 214 (379)
T ss_pred HHHHHHHHHHhhhcchhhhhhHHHHHHHHHhh--cchhhhhhhhhhcchhh----hhhhhhhhhh---------------
Confidence 99999999999999999999999999999889 88888888777777666 4455544444
Q ss_pred hhhhcccccccccCCCCcc-CCCCCCCCCCC-ccCccCCCCC--CCCCCCCCccc-cCCCCCCCCCCCCCC--cccccc
Q 020162 239 KERLSAYSNSASESSRGKE-GHQAETSTSSR-SIESSESNPA--SDRPVSDSSEQ-EKPSVEKPSDGQPKP--DHHKRG 310 (330)
Q Consensus 239 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~r-s~~~~~~~~~--~~~~~~d~~~~-~~~~~e~~~~~~pk~--~~~k~~ 310 (330)
+.+..+|.... .+.++++.++. |.+.+++.+. +-.+++|...+ +++++.+...+.|.. .||+.+
T Consensus 215 --------e~~~~~pek~~~p~a~~~g~s~~k~de~~ea~~~~~~k~~~~d~~ee~n~~s~k~a~~~~~~s~~~~~~~~ 285 (379)
T KOG2117|consen 215 --------EEKDESPEKNRIPDAKKIGQSLSKSDENEEADQRQDQKESLSDRKEETNNSSRKEAAKHHPSSDKRHLKPS 285 (379)
T ss_pred --------hhcccCchhccCCchhhhcchhhccccchhhccccchhhcccccchhhcchhhhhhhhcCchhhhhhcccc
Confidence 12234444444 68888888765 7888888883 77888998888 899999999999966 566655
No 2
>PF09745 DUF2040: Coiled-coil domain-containing protein 55 (DUF2040); InterPro: IPR018612 This entry represents a conserved domain of approximately 130 residues of proteins conserved from fungi to humans. Some proteins containing this domain are described as coiled-coil domain-containing protein 55, but the function is unknown.
Probab=100.00 E-value=6.7e-43 Score=297.64 Aligned_cols=122 Identities=51% Similarity=0.822 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhcCCCccccchhhhhhhhhhhhh---h-hhhhcccCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
Q 020162 59 EIEEQQRKALAEDPNVFDYDGCYDEMKQKSVRR---K-VQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKED 134 (330)
Q Consensus 59 k~~~~~~kAleeDpsVfdYD~vYD~mk~k~~~~---k-~~~~~~rKPKYI~~LlkaAe~RKrE~e~~~ERkiqKEREaEg 134 (330)
+++.++++||++|||||+||+|||+|+.++... . ......++||||++||++|++|++|+++++||+|||||++||
T Consensus 2 ~~~~~~~~A~~~DptvfdYD~vYD~m~~~~~~~~~~~~~~~~~~rkpKYi~~Ll~~A~~Rk~E~~~~~ErklqKERe~Eg 81 (127)
T PF09745_consen 2 QAKKEAQKALEEDPTVFDYDEVYDDMKAKKEEKKQAKQQEDKEKRKPKYISNLLKAAKRRKRERERAEERKLQKEREAEG 81 (127)
T ss_pred chHHHHHHHhccCChHhhHHHHHHHHhhhhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999999999775432 2 123346999999999999999999999999999999999999
Q ss_pred cccCCccceecHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCch
Q 020162 135 HLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERDDVTKKTDV 180 (330)
Q Consensus 135 deF~DKE~FVTsAYKkKLEE~rk~eEeEr~~e~~Ee~~dvtKq~dL 180 (330)
++|+|||+|||+|||++|+|+++|++++++++++++.++||++++|
T Consensus 82 ~~f~dkE~FVT~AYKkkleE~k~~eeee~~~e~~e~~~~~~k~~dl 127 (127)
T PF09745_consen 82 DEFADKEKFVTSAYKKKLEERKKWEEEEKRREELEEKNDVTKQKDL 127 (127)
T ss_pred cccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCC
Confidence 9999999999999999999999999999999999999999999886
No 3
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=33.20 E-value=1.3e+02 Score=29.49 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=30.6
Q ss_pred ccCcHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHhhhccccCCccceecHHHHHHHHHHHHHHHHHHHHh
Q 020162 98 DTQPKYIHKLIHKADERKRE--HDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRD 166 (330)
Q Consensus 98 ~rKPKYI~~LlkaAe~RKrE--~e~~~ERkiqKEREaEgdeF~DKE~FVTsAYKkKLEE~rk~eEeEr~~e 166 (330)
...-+-+..+++.+..-+.| ++++.|++.++++..-..+ | -+|+++|+|.|++++
T Consensus 262 k~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~l--------s------peeQrK~eeKe~kk~ 318 (321)
T PF07946_consen 262 KNREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKL--------S------PEEQRKYEEKERKKE 318 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------C------HHHHHHHHHHHHHHh
Confidence 34556777788777765555 3333333333333222222 1 378888888877765
No 4
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=27.51 E-value=5.7e+02 Score=29.81 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=13.0
Q ss_pred CcHHHHHHHHHHHHhhhH
Q 020162 100 QPKYIHKLIHKADERKRE 117 (330)
Q Consensus 100 KPKYI~~LlkaAe~RKrE 117 (330)
.-+|-.+||++|..|..-
T Consensus 811 ~a~~c~~ll~~a~~~~~~ 828 (1018)
T KOG2002|consen 811 EAQLCKDLLKQALEHVAQ 828 (1018)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346788899988776543
No 5
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.29 E-value=2.3e+02 Score=27.22 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=45.7
Q ss_pred HHHHHHHHHHH-hcCCCccccchhhhhhhhhhhhhhhhhhcccCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Q 020162 58 KEIEEQQRKAL-AEDPNVFDYDGCYDEMKQKSVRRKVQDRADTQPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHL 136 (330)
Q Consensus 58 kk~~~~~~kAl-eeDpsVfdYD~vYD~mk~k~~~~k~~~~~~rKPKYI~~LlkaAe~RKrE~e~~~ERkiqKEREaEgde 136 (330)
++++.++.+.| ..+--|-.||.||+-+........ |=||=+.|- .+=++|||=|+.=..-
T Consensus 4 RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~Q-------KEK~E~DLK------------kEIKKLQR~RdQIK~W 64 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQ-------KEKLEADLK------------KEIKKLQRLRDQIKTW 64 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcch-------HHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 34455555555 266678889999999988542211 113333332 2225566666443332
Q ss_pred cCCccceecHHHHHHHHHHHHHHHHHHHH
Q 020162 137 FADKEKFVTGAYKKKLEEQQRWAREQALR 165 (330)
Q Consensus 137 F~DKE~FVTsAYKkKLEE~rk~eEeEr~~ 165 (330)
-++.++= -|..|.+.++..|....+
T Consensus 65 ~~~~diK----dk~~L~e~Rk~IE~~MEr 89 (233)
T PF04065_consen 65 LSSNDIK----DKKKLLENRKLIEEQMER 89 (233)
T ss_pred ccCcccc----cHHHHHHHHHHHHHHHHH
Confidence 2222221 356788888877754443
No 6
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=15.99 E-value=75 Score=28.98 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=6.3
Q ss_pred CCCCCCCCC
Q 020162 26 PPPKAFGLD 34 (330)
Q Consensus 26 ~~~svF~~~ 34 (330)
..++||+.|
T Consensus 91 ~va~~Fn~d 99 (150)
T PF15473_consen 91 SVAAVFNED 99 (150)
T ss_pred hhhhhhccc
Confidence 357899943
No 7
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=12.83 E-value=1.2e+03 Score=27.19 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh
Q 020162 146 GAYKKKLEEQQRWAREQALRDLRDE 170 (330)
Q Consensus 146 sAYKkKLEE~rk~eEeEr~~e~~Ee 170 (330)
..|++.=||+.+-+|+++.++..++
T Consensus 802 ~~~re~EEEr~Rr~EEe~~ae~~ee 826 (988)
T KOG2072|consen 802 AYYREIEEERARREEEEANAERQEE 826 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777787777777776665554
No 8
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=10.80 E-value=4e+02 Score=23.74 Aligned_cols=32 Identities=28% Similarity=0.211 Sum_probs=24.6
Q ss_pred ccCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 020162 98 DTQPKYIHKLIHKADERKREHDIIYERKLTKE 129 (330)
Q Consensus 98 ~rKPKYI~~LlkaAe~RKrE~e~~~ERkiqKE 129 (330)
-==||||..|.+.|++-+.--+..+++|-.+-
T Consensus 23 iIFPkTI~~L~e~A~qh~~~Il~eye~mk~~~ 54 (125)
T PF13256_consen 23 IIFPKTIDTLKEQAEQHKEQILHEYEGMKKKV 54 (125)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999988777777777665443
No 9
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=10.06 E-value=7.6e+02 Score=28.62 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred ccCcHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHhhhccccCCccceecHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 020162 98 DTQPKYIHKLIHKADERKR---EHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDERD 172 (330)
Q Consensus 98 ~rKPKYI~~LlkaAe~RKr---E~e~~~ERkiqKEREaEgdeF~DKE~FVTsAYKkKLEE~rk~eEeEr~~e~~Ee~~ 172 (330)
.|+--|-.+-++--.+|+. ++.+..|+..|||||.+.- |+.=--..=++++.|+.+.+|..|.-|..-+..
T Consensus 317 KrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ek----kererqEqErk~qlElekqLerQReiE~qrEEe 390 (1118)
T KOG1029|consen 317 KRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEK----KERERQEQERKAQLELEKQLERQREIERQREEE 390 (1118)
T ss_pred hhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=9.58 E-value=9.4e+02 Score=25.42 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCCccceecHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 020162 104 IHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKEKFVTGAYKKKLEEQQRWAREQALRDLRDER 171 (330)
Q Consensus 104 I~~LlkaAe~RKrE~e~~~ERkiqKEREaEgdeF~DKE~FVTsAYKkKLEE~rk~eEeEr~~e~~Ee~ 171 (330)
...+-+++..++.+|+..+-..+++.|.. .+++.++.+..+.+.+-+.++++.+.
T Consensus 307 ~~~er~~r~~~~~eQd~eyq~sle~Dr~r-------------~~e~e~~~e~~r~e~er~~~~ee~e~ 361 (460)
T KOG1363|consen 307 EQDEREARLALEQEQDDEYQASLEADRVR-------------EAEAEQAAEEFRLEKERKEEEEERET 361 (460)
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHhhHHHHHhhhhhhHHHHHHH
Done!