Query 020162
Match_columns 330
No_of_seqs 143 out of 183
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zvv_Y Cyclin-dependent kinase 13.9 53 0.0018 20.9 0.6 13 175-187 4-16 (26)
2 3h8k_B Autocrine motility fact 9.5 1.1E+02 0.0038 19.7 1.1 17 307-323 11-27 (28)
3 2iuk_A SEED lipoxygenase; iron 6.7 93 0.0032 33.7 -0.3 17 70-87 205-221 (864)
4 1bnx_A Protein (BAND 3); human 6.6 2.2E+02 0.0075 18.9 1.6 17 181-197 15-31 (34)
5 1xi4_J LCA, clathrin light cha 6.4 3.2E+02 0.011 20.7 2.6 12 177-188 41-52 (70)
6 4f6r_C Stathmin-like domain R1 6.3 3.6E+02 0.012 21.5 3.0 26 108-133 51-76 (87)
7 2krg_A Na(+)/H(+) exchange reg 6.2 3.1E+02 0.01 24.0 2.8 18 309-326 180-197 (216)
8 2q2f_A Selenoprotein S; anti-p 5.9 2.9E+02 0.0098 22.2 2.2 23 303-325 38-60 (89)
9 1x4p_A Putative splicing facto 5.8 2.5E+02 0.0087 21.4 1.7 13 145-157 48-60 (66)
10 2dt7_A Splicing factor 3A subu 5.5 1.9E+02 0.0065 19.5 0.8 15 174-188 6-20 (38)
No 1
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=13.88 E-value=53 Score=20.93 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=10.4
Q ss_pred cCCCchhHHHHHH
Q 020162 175 TKKTDVSDFYFNL 187 (330)
Q Consensus 175 tKq~dLsgFYr~L 187 (330)
.+|.+|.+||..-
T Consensus 4 rkQTs~TDFYhsK 16 (26)
T 2zvv_Y 4 RRQTSMTDFYHSK 16 (26)
T ss_pred ccccchhHHHhhh
Confidence 4788999999753
No 2
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=9.48 E-value=1.1e+02 Score=19.71 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=14.6
Q ss_pred cccchhHHHHHHHHHHH
Q 020162 307 HKRGQDALAAAKERFMA 323 (330)
Q Consensus 307 ~k~~~da~aaa~~rfla 323 (330)
..|.++-|.+|+.|+|-
T Consensus 11 q~Rk~~mi~~ARrryl~ 27 (28)
T 3h8k_B 11 VQRKDELLQQARKRFLN 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46889999999999983
No 3
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max}
Probab=6.75 E-value=93 Score=33.69 Aligned_cols=17 Identities=24% Similarity=0.739 Sum_probs=13.2
Q ss_pred cCCCccccchhhhhhhhh
Q 020162 70 EDPNVFDYDGCYDEMKQK 87 (330)
Q Consensus 70 eDpsVfdYD~vYD~mk~k 87 (330)
+---||||| ||.++-..
T Consensus 205 ~~driydyd-~yndlg~p 221 (864)
T 2iuk_A 205 DFDRIYDYD-VYNDLGNP 221 (864)
T ss_dssp TTCCCCCEE-CBCCSCBG
T ss_pred ccccchhhh-hhhcCCCc
Confidence 346799999 99988653
No 4
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=6.59 E-value=2.2e+02 Score=18.93 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=13.8
Q ss_pred hHHHHHHHhhhhcCCCC
Q 020162 181 SDFYFNLHKNVAFGGGN 197 (330)
Q Consensus 181 sgFYr~LlkN~a~G~~~ 197 (330)
=-|+-+|+-.+|||+.-
T Consensus 15 fiyFa~l~PaIaFg~ll 31 (34)
T 1bnx_A 15 FIYFAALSPAITFGGLL 31 (34)
T ss_dssp HHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34788999999999864
No 5
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=6.37 E-value=3.2e+02 Score=20.72 Aligned_cols=12 Identities=8% Similarity=0.387 Sum_probs=10.0
Q ss_pred CCchhHHHHHHH
Q 020162 177 KTDVSDFYFNLH 188 (330)
Q Consensus 177 q~dLsgFYr~Ll 188 (330)
+++|.+||.|..
T Consensus 41 ~k~iddfY~~yn 52 (70)
T 1xi4_J 41 IKELDEWYARQD 52 (70)
T ss_pred HHHHHHHHHHHH
Confidence 467999999885
No 6
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=6.30 E-value=3.6e+02 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=13.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhh
Q 020162 108 IHKADERKREHDIIYERKLTKERSKE 133 (330)
Q Consensus 108 lkaAe~RKrE~e~~~ERkiqKEREaE 133 (330)
|++|+.|.+-++...-++++-.|+.+
T Consensus 51 LeAAeERRks~EA~~L~~Laekreh~ 76 (87)
T 4f6r_C 51 LEAAEERRKAHFAAMLERLQEKDKHA 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444443
No 7
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=6.24 E-value=3.1e+02 Score=24.02 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=12.9
Q ss_pred cchhHHHHHHHHHHHHHH
Q 020162 309 RGQDALAAAKERFMARKK 326 (330)
Q Consensus 309 ~~~da~aaa~~rflark~ 326 (330)
.-...+|-||||+.+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~ 197 (216)
T 2krg_A 180 DFNISLAMAKERAHQKRS 197 (216)
T ss_dssp CHHHHHHTTGGGTTCCCC
T ss_pred ccChhHHHHHHHHHhccc
Confidence 446778888998876553
No 8
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=5.95 E-value=2.9e+02 Score=22.21 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=17.4
Q ss_pred CCcccccchhHHHHHHHHHHHHH
Q 020162 303 KPDHHKRGQDALAAAKERFMARK 325 (330)
Q Consensus 303 k~~~~k~~~da~aaa~~rflark 325 (330)
.||---|.+.||+|||-|.-..-
T Consensus 38 dPd~vv~RQEAl~aaRlRMQEel 60 (89)
T 2q2f_A 38 EPDVVVKRQEALAAARLKMQEEL 60 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666689999999999875443
No 9
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=5.78 E-value=2.5e+02 Score=21.41 Aligned_cols=13 Identities=54% Similarity=0.537 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHHH
Q 020162 145 TGAYKKKLEEQQR 157 (330)
Q Consensus 145 TsAYKkKLEE~rk 157 (330)
--=||.||+|+++
T Consensus 48 ykYYr~KlaE~r~ 60 (66)
T 1x4p_A 48 YKYYKLKLAEMQR 60 (66)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3568999998886
No 10
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.51 E-value=1.9e+02 Score=19.48 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=10.1
Q ss_pred ccCCCchhHHHHHHH
Q 020162 174 VTKKTDVSDFYFNLH 188 (330)
Q Consensus 174 vtKq~dLsgFYr~Ll 188 (330)
.+.+.-|+.||..|-
T Consensus 6 lsg~~~f~~FY~rlk 20 (38)
T 2dt7_A 6 ISGPNEFAEFYNRLK 20 (38)
T ss_dssp CCSCCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHH
Confidence 333334899999884
Done!