Query 020162
Match_columns 330
No_of_seqs 143 out of 183
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 12:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020162.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020162hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gjsa_ a.8.1.2 (A:) IgG bindi 20.8 21 0.0016 25.4 1.9 15 176-190 32-46 (65)
2 d1e7la1 a.140.4.1 (A:104-157) 10.6 1.2E+02 0.0089 20.6 3.6 47 100-153 2-50 (54)
3 d1nyta2 c.58.1.5 (A:1-101) Shi 9.1 35 0.0025 24.8 0.2 8 1-8 1-8 (101)
4 d3bnea1 a.119.1.1 (A:150-839) 8.0 36 0.0026 33.4 -0.3 14 72-86 32-45 (690)
5 d2ahob1 a.60.14.1 (B:85-175) E 7.7 1.2E+02 0.0086 21.7 2.7 39 76-114 48-87 (91)
6 d1kija1 d.14.1.3 (A:221-392) D 6.5 1.1E+02 0.0084 24.2 2.3 18 311-329 153-170 (172)
7 d1p77a2 c.58.1.5 (A:1-101) Shi 5.8 55 0.004 23.6 -0.2 8 1-8 1-8 (101)
8 d1jt6a1 a.4.1.9 (A:2-72) Multi 5.0 1.2E+02 0.0085 19.8 1.2 25 136-160 41-65 (71)
9 d2j5ya1 a.8.1.2 (A:1-53) PAB { 4.3 2.9E+02 0.021 18.5 2.8 28 157-188 4-32 (53)
10 d2p62a1 e.67.1.1 (A:1-241) Hyp 3.9 1.5E+02 0.011 25.3 1.3 11 177-187 200-211 (241)
No 1
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=20.81 E-value=21 Score=25.39 Aligned_cols=15 Identities=53% Similarity=0.711 Sum_probs=12.1
Q ss_pred CCCchhHHHHHHHhh
Q 020162 176 KKTDVSDFYFNLHKN 190 (330)
Q Consensus 176 Kq~dLsgFYr~LlkN 190 (330)
++-|+|+||.||.+|
T Consensus 32 k~yGisdyy~nlIN~ 46 (65)
T d1gjsa_ 32 DKYGVSDYYKNLINN 46 (65)
T ss_dssp HHHTCCHHHHHHHHT
T ss_pred HHcCchHHHHHHHhc
Confidence 456889999999855
No 2
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=10.65 E-value=1.2e+02 Score=20.62 Aligned_cols=47 Identities=11% Similarity=0.255 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccccCCcc--ceecHHHHHHHH
Q 020162 100 QPKYIHKLIHKADERKREHDIIYERKLTKERSKEDHLFADKE--KFVTGAYKKKLE 153 (330)
Q Consensus 100 KPKYI~~LlkaAe~RKrE~e~~~ERkiqKEREaEgdeF~DKE--~FVTsAYKkKLE 153 (330)
-|+|+..+.+.--+--+...+++.. ..|=+|.|++ +=+|..|++|+-
T Consensus 2 Hp~~~~D~~K~FSR~~k~eM~Aem~-------~~GF~Yne~dtk~el~~kf~KQ~~ 50 (54)
T d1e7la1 2 HPNFVGDKSKEFSRLGKEEMMAEML-------QRGFEYNESDTKTQLIASFKKQLR 50 (54)
T ss_dssp CTHHHHHHHHHHHTSCHHHHHHHHH-------HHTCCCCTTCCHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHccHHHHHHHHH-------HcCccccchhHHHHHHHHHHHHHH
Confidence 4889999988877766666666544 5688888764 457788999873
No 3
>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
Probab=9.08 E-value=35 Score=24.78 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=6.5
Q ss_pred Cccccccc
Q 020162 1 MSKYGLQL 8 (330)
Q Consensus 1 ~KkYGLil 8 (330)
|++||||=
T Consensus 1 M~~~~liG 8 (101)
T d1nyta2 1 METYAVFG 8 (101)
T ss_dssp CCSEEEEE
T ss_pred CCEEEEeC
Confidence 88999874
No 4
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Probab=7.96 E-value=36 Score=33.42 Aligned_cols=14 Identities=29% Similarity=0.954 Sum_probs=12.0
Q ss_pred CCccccchhhhhhhh
Q 020162 72 PNVFDYDGCYDEMKQ 86 (330)
Q Consensus 72 psVfdYD~vYD~mk~ 86 (330)
--||||| ||.++-.
T Consensus 32 driydy~-~yndlg~ 45 (690)
T d3bnea1 32 DRIYDYD-VYNDLGN 45 (690)
T ss_dssp CCCCCEE-CBCSSCC
T ss_pred ccccccc-ccccCCC
Confidence 4699999 9999965
No 5
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.71 E-value=1.2e+02 Score=21.67 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=26.2
Q ss_pred ccchhhhhhhhhhhh-hhhhhhcccCcHHHHHHHHHHHHh
Q 020162 76 DYDGCYDEMKQKSVR-RKVQDRADTQPKYIHKLIHKADER 114 (330)
Q Consensus 76 dYD~vYD~mk~k~~~-~k~~~~~~rKPKYI~~LlkaAe~R 114 (330)
.|+.+||-++..... +.....-.--..++.-|++.|.++
T Consensus 48 kyg~lY~AFe~a~~~g~~~l~~~~i~~~~~~~l~e~a~~~ 87 (91)
T d2ahob1 48 KYGDPITAIEKAVKEGEKILIDAGVPEIWVKPLLEEASKH 87 (91)
T ss_dssp TTSCHHHHHHHHHHSCTHHHHTTTCCTTTHHHHHHHHHHH
T ss_pred HHCcHHHHHHHHHhcChhhHhhCCCCHHHHHHHHHHHHHh
Confidence 689999999876422 333333345567888888888765
No 6
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=6.54 E-value=1.1e+02 Score=24.21 Aligned_cols=18 Identities=56% Similarity=0.619 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 020162 311 QDALAAAKERFMARKKAKE 329 (330)
Q Consensus 311 ~da~aaa~~rflark~ak~ 329 (330)
+-+|.+|++|--|| +|++
T Consensus 153 ~k~~~~~~aR~~ar-kare 170 (172)
T d1kija1 153 EKALRAAQAREAAR-KARE 170 (172)
T ss_dssp HHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHH-hhhc
Confidence 45677788884444 4553
No 7
>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}
Probab=5.80 E-value=55 Score=23.56 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=6.0
Q ss_pred Cccccccc
Q 020162 1 MSKYGLQL 8 (330)
Q Consensus 1 ~KkYGLil 8 (330)
||+||||=
T Consensus 1 M~~~~viG 8 (101)
T d1p77a2 1 MDLYAVWG 8 (101)
T ss_dssp CEEEEEEE
T ss_pred CCEEEEeC
Confidence 78888873
No 8
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=5.04 E-value=1.2e+02 Score=19.77 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=17.7
Q ss_pred ccCCccceecHHHHHHHHHHHHHHH
Q 020162 136 LFADKEKFVTGAYKKKLEEQQRWAR 160 (330)
Q Consensus 136 eF~DKE~FVTsAYKkKLEE~rk~eE 160 (330)
-|++|+.++...+....+......+
T Consensus 41 ~F~~K~~L~~~~~~~~~~~~~~~~~ 65 (71)
T d1jt6a1 41 HFKTKENLFLEILNIEESKWQEQWK 65 (71)
T ss_dssp HHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888777766554433
No 9
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=4.29 E-value=2.9e+02 Score=18.47 Aligned_cols=28 Identities=43% Similarity=0.672 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHhhhhhhccCCCch-hHHHHHHH
Q 020162 157 RWAREQALRDLRDERDDVTKKTDV-SDFYFNLH 188 (330)
Q Consensus 157 k~eEeEr~~e~~Ee~~dvtKq~dL-sgFYr~Ll 188 (330)
.|.-.+..++...+. |+.|+ |.||.++.
T Consensus 4 ~~~Lk~AKe~AI~eL----K~~GIts~~y~~~I 32 (53)
T d2j5ya1 4 QWLLKNAKEDAIAEL----KKAGITSDFYFNAI 32 (53)
T ss_dssp HHHHHHHHHHHHHHH----HHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHcCccHHHHHHHH
Confidence 344444444443332 45666 89999997
No 10
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.85 E-value=1.5e+02 Score=25.34 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=8.9
Q ss_pred CCc-hhHHHHHH
Q 020162 177 KTD-VSDFYFNL 187 (330)
Q Consensus 177 q~d-LsgFYr~L 187 (330)
.++ |+|||+.+
T Consensus 200 ~Gn~leGfYe~F 211 (241)
T d2p62a1 200 TGDCLSGLYEKY 211 (241)
T ss_dssp CSSBHHHHHHHH
T ss_pred CcchHhHHHHHH
Confidence 355 99999987
Done!