BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020163
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1
Length = 325
Score = 499 bits (1286), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/334 (74%), Positives = 280/334 (83%), Gaps = 13/334 (3%)
Query: 1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
M S+Q PV CPA+R RQ G + V TG +K R S+ WG KG+ + T +
Sbjct: 1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55
Query: 58 RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
R N K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56 RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111
Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIAR 176
GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171
Query: 177 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 236
PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231
Query: 237 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 296
VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILS 291
Query: 297 NMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
M+ A EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 292 KMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325
>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1
Length = 329
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/331 (70%), Positives = 276/331 (83%), Gaps = 3/331 (0%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
M SLQ PV CP+VR RQ G+ + + V K R R + WG + K++ +
Sbjct: 1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58
Query: 61 NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
+ R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR
Sbjct: 59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118
Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIV +MPSVLLMAAM NVQIARPT+
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178
Query: 180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238
Query: 240 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 299
KVPIQVNKYLAYSDGMRVI+SGKLS +P SDGLLFTELD+P+GQPC DTKEF+LVRNM+
Sbjct: 239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMM 298
Query: 300 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
A EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct: 299 QAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329
>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2
PE=2 SV=1
Length = 325
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/326 (58%), Positives = 257/326 (78%), Gaps = 10/326 (3%)
Query: 3 SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
+++GP+ C AV + + N++ +G + A F + ++ +T + + + ++
Sbjct: 2 AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59
Query: 60 QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
A C +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60 NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115
Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPT 178
+LRCVHNN QG ++P+ AP PAIVL++EDG+ LLPIIV +MPSVLLMAA+RNV IARPT
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPT 175
Query: 179 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 238
+YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIAVR
Sbjct: 176 IYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVR 235
Query: 239 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 298
CKVPIQV++ LAYSDG+R +E +++ + SDGLLFTELD+P GQPC++ +EF L+RNM
Sbjct: 236 CKVPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIRNM 295
Query: 299 LIAAVEERYRDAAQWRDKLGQLRAKR 324
LIAAVEERY+DAA WRDKL LR+KR
Sbjct: 296 LIAAVEERYKDAATWRDKLMLLRSKR 321
>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1
Length = 331
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 169/329 (51%), Positives = 238/329 (72%), Gaps = 7/329 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIA 175
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV + PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 176 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 235
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 236 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 295
A RCKVPIQVN+ +AY++G++V++ ++ SD +T LD+P QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298
Query: 296 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 324
RNML+AAVEERY+DAAQ+RD+L RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327
>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1
PE=2 SV=1
Length = 331
Score = 313 bits (803), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 169/329 (51%), Positives = 238/329 (72%), Gaps = 7/329 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIA 175
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV + PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 176 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 235
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 236 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 295
A RCKVPIQVN+ +AY++G++V++ ++ SD +T LD+P QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298
Query: 296 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 324
RNML+AAVEERY+DAAQ+RD+L RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327
>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3
SV=1
Length = 331
Score = 311 bits (796), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 169/329 (51%), Positives = 237/329 (72%), Gaps = 7/329 (2%)
Query: 1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
M + GPV G L + +G +++ R G +G A + G F
Sbjct: 1 MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59
Query: 59 QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
+++AR + V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60 ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119
Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIA 175
DG++LRCV NNP+ L D APH AIVLKMEDG+ LLLPIIV + PS++L+AA+RN++I
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179
Query: 176 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 235
RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239
Query: 236 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 295
A RCKVPIQVN+ +AY++G++V++ ++ SD T LD+P QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQCTRLDRPDDQPCFEAQEFDLV 298
Query: 296 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 324
RNML+AAVEERY+DAAQ+RD+L RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327
>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis
GN=Rv1829 PE=4 SV=2
Length = 164
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 139 HPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 198
P ++L+ +G L I Q + + + V+ RP + +++++I +G+ ++ VR
Sbjct: 17 QPVLLLREANGDRYLPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVR 76
Query: 199 VTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 257
+ ++A L + + RPSD++ IA+R VPI V + + G+ +
Sbjct: 77 IVDLQEGTFYADLIFDR------NIKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129
>sp|Q1RK25|EX7L_RICBR Exodeoxyribonuclease 7 large subunit OS=Rickettsia bellii (strain
RML369-C) GN=xseA PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 225 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 283
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L E +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVENLQPAG 110
>sp|A8GXS3|EX7L_RICB8 Exodeoxyribonuclease 7 large subunit OS=Rickettsia bellii (strain
OSU 85-389) GN=xseA PE=3 SV=1
Length = 442
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 225 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 283
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L E +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVENLQPAG 110
>sp|Q68W63|EX7L_RICTY Exodeoxyribonuclease 7 large subunit OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=xseA PE=3 SV=1
Length = 453
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 225 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 283
F+L+ + AI +A C PI V +DGM V+ GKLS++S S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILVKIKFPLNDGMEVVIGGKLSSYSGNSRYQLSVDNLQPAG 110
>sp|Q92GU6|EX7L_RICCN Exodeoxyribonuclease 7 large subunit OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=xseA PE=3 SV=2
Length = 444
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 225 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 283
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKITFPLNDGMEVVISGKLSSYAGNSRYQLSVDNLQPTG 110
>sp|C3PPC7|EX7L_RICAE Exodeoxyribonuclease 7 large subunit OS=Rickettsia africae (strain
ESF-5) GN=xseA PE=3 SV=1
Length = 444
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 225 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 283
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVDNLQPTG 110
>sp|Q4UMV4|EX7L_RICFE Exodeoxyribonuclease 7 large subunit OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=xseA PE=3 SV=2
Length = 450
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 225 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 283
F+L+ + AI +A C PI +DGM V+ SGKLS+++ S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVISGKLSSYAGNSRYQLSVDNLQPAG 110
>sp|P75010|TERW_SERMA Tellurium resistance protein TerW OS=Serratia marcescens GN=terW
PE=4 SV=1
Length = 155
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 171 NVQIARPTLYQVVKEMIE---------KMGYEVRLV-------RVTKRVHEAYFAQLYLT 214
+++ + PTL + +KE+ E K G+ LV + +R++EA AQ
Sbjct: 31 SLECSEPTLTRALKELRESYSAEIKYSKAGHSYHLVNPGQLDKKTLRRMNEA-LAQNAEL 89
Query: 215 KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHS 267
K G T V D A+++++R ++ ++++ A S R KL+ HS
Sbjct: 90 KTGESTGKVVLDKDKKTAVSLSLRMRILRKIDRLAALSGSTRSEAVEKLALHS 142
>sp|Q9KHS2|SSUD_PSESP Alkanesulfonate monooxygenase OS=Pseudomonas sp. GN=ssuD PE=3 SV=1
Length = 382
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 246 NKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVE 304
KYL SDG R ++ G L + +D L F + P+G+ C D+ LV LI E
Sbjct: 15 GKYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDSW---LVAASLIPVTE 70
>sp|Q9ZCP8|EX7L_RICPR Exodeoxyribonuclease 7 large subunit OS=Rickettsia prowazekii
(strain Madrid E) GN=xseA PE=3 SV=1
Length = 453
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 225 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSG 283
F+L+ + AI +A C PI +DGM V+ GKLS++S S L + +P+G
Sbjct: 53 FNLKENTAI-LACTCWRPILAKIKFPLNDGMEVVIGGKLSSYSGNSRYQLSVDNLQPAG 110
>sp|Q9KHR3|SSUD_BUTSP Alkanesulfonate monooxygenase OS=Buttiauxella sp. (strain PNBS)
GN=ssuD PE=3 SV=1
Length = 382
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 246 NKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDT 289
KYL SDG R ++ G L + +D L F + P+G+ C D+
Sbjct: 15 GKYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDS 58
>sp|B0KH56|SSUD_PSEPG Alkanesulfonate monooxygenase OS=Pseudomonas putida (strain GB-1)
GN=ssuD PE=3 SV=1
Length = 382
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 246 NKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDT 289
KYL SDG R ++ G L + +D L F + P+G+ C D+
Sbjct: 15 GKYLGTSDGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDS 58
>sp|Q4QNE5|EX7L_HAEI8 Exodeoxyribonuclease 7 large subunit OS=Haemophilus influenzae
(strain 86-028NP) GN=xseA PE=3 SV=1
Length = 439
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 195 RLVRVTKRVHEAYFAQLYLT-KVGNETECVS--FDLRPSDAINIAVRCKVPIQVNKYLAY 251
+L +++ E F+Q++LT ++ N T+ VS + L D N VRC + N +A+
Sbjct: 10 QLNSAARQMLEGNFSQIWLTGEISNFTQPVSGHWYLTLKDE-NAQVRCAMFRMKNLRVAF 68
Query: 252 --SDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIA 301
+GM+V+ +S + P D L + P+G+ L ++F ++ L A
Sbjct: 69 RPQNGMQVLVRANVSLYEPRGDYQLIIDSMHPAGEGLLQ-QQFEALKMKLAA 119
>sp|P43913|EX7L_HAEIN Exodeoxyribonuclease 7 large subunit OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=xseA PE=3
SV=1
Length = 439
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 195 RLVRVTKRVHEAYFAQLYLT-KVGNETECVS--FDLRPSDAINIAVRCKVPIQVNKYLAY 251
+L +++ E F Q++LT ++ N T+ VS + L D N VRC + N +A+
Sbjct: 10 QLNSAARQMLEGNFCQIWLTGEISNFTQPVSGHWYLTLKDE-NAQVRCAMFRMKNLRVAF 68
Query: 252 --SDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIA 301
+GM+V+ +S + P D L + P+G+ L ++F ++ L A
Sbjct: 69 RPQNGMQVLVRANVSLYEPRGDYQLIIDSMHPAGEGLLQ-QQFEALKMKLAA 119
>sp|Q1RA49|HIS4_ECOUT 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Escherichia coli
(strain UTI89 / UPEC) GN=hisA PE=3 SV=2
Length = 245
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 109 DGFMIKMRDGRH--LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLM 166
DG ++++ G + R NNP L DYA A VL + D TG P Q+P + +
Sbjct: 10 DGTVVRLHQGDYGKQRDYGNNPLP-RLQDYAAQGAEVLHLVDLTGAKDPAKRQIPLIKTL 68
Query: 167 AAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNET-ECVS- 224
A NV + ++G VR + + EA A++ + ++ E V
Sbjct: 69 VAGVNVPV--------------QVGGGVRSEKDVAALLEAGVARVVVGSTAVKSPEMVKG 114
Query: 225 -FDLRPSDAINIAVRCKVPIQVNKYLAYS 252
F+ +DA+ +A+ ++ Q NK +A S
Sbjct: 115 WFERFGADALVLALDVRIDEQGNKQVAVS 143
>sp|Q8FG49|HIS4_ECOL6 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=hisA PE=3
SV=2
Length = 245
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 109 DGFMIKMRDGRH--LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLM 166
DG ++++ G + R NNP L DYA A VL + D TG P Q+P + +
Sbjct: 10 DGTVVRLHQGDYGKQRDYGNNPLP-RLQDYAAQGAEVLHLVDLTGAKDPAKRQIPLIKTL 68
Query: 167 AAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNET-ECVS- 224
A NV + ++G VR + + EA A++ + ++ E V
Sbjct: 69 VAGVNVPV--------------QVGGGVRSEKDVAALLEAGVARVVVGSTAVKSPEMVKG 114
Query: 225 -FDLRPSDAINIAVRCKVPIQVNKYLAYS 252
F+ +DA+ +A+ ++ Q NK +A S
Sbjct: 115 WFERFGADALVLALDVRIDEQGNKQVAVS 143
>sp|Q0TG63|HIS4_ECOL5 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=hisA PE=3 SV=1
Length = 245
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 109 DGFMIKMRDGRH--LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLM 166
DG ++++ G + R NNP L DYA A VL + D TG P Q+P + +
Sbjct: 10 DGTVVRLHQGDYGKQRDYGNNPLP-RLQDYAAQGAEVLHLVDLTGAKDPAKRQIPLIKTL 68
Query: 167 AAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNET-ECVS- 224
A NV + ++G VR + + EA A++ + ++ E V
Sbjct: 69 VAGVNVPV--------------QVGGGVRSEKDVAALLEAGVARVVVGSTAVKSPEMVKG 114
Query: 225 -FDLRPSDAINIAVRCKVPIQVNKYLAYS 252
F+ +DA+ +A+ ++ Q NK +A S
Sbjct: 115 WFERFGADALVLALDVRIDEQGNKQVAVS 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,359,430
Number of Sequences: 539616
Number of extensions: 4973717
Number of successful extensions: 12752
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12730
Number of HSP's gapped (non-prelim): 25
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)