Query 020163
Match_columns 330
No_of_seqs 266 out of 811
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 6.7E-34 1.4E-38 244.0 14.4 120 136-259 11-131 (135)
2 COG1259 Uncharacterized conser 100.0 1.5E-32 3.3E-37 240.3 15.2 123 134-259 14-137 (151)
3 PF02151 UVR: UvrB/uvrC motif; 98.2 2.4E-06 5.2E-11 58.3 4.8 34 290-323 2-36 (36)
4 COG3880 Modulator of heat shoc 98.2 2.5E-06 5.4E-11 76.8 5.1 38 288-325 134-172 (176)
5 PRK05298 excinuclease ABC subu 94.7 0.047 1E-06 58.3 5.4 37 290-326 613-650 (652)
6 COG0556 UvrB Helicase subunit 94.5 0.053 1.2E-06 57.2 5.1 37 289-325 623-660 (663)
7 TIGR00631 uvrb excinuclease AB 93.8 0.06 1.3E-06 57.7 4.0 32 290-321 623-655 (655)
8 PRK00558 uvrC excinuclease ABC 93.3 0.1 2.2E-06 55.5 4.7 35 290-324 202-237 (598)
9 PRK07883 hypothetical protein; 93.1 0.11 2.4E-06 54.7 4.6 31 292-322 408-439 (557)
10 PRK12306 uvrC excinuclease ABC 92.3 0.18 3.8E-06 52.9 4.7 32 291-322 193-225 (519)
11 PRK14666 uvrC excinuclease ABC 91.9 0.19 4.2E-06 54.4 4.6 33 291-323 202-235 (694)
12 PRK14668 uvrC excinuclease ABC 91.5 0.24 5.2E-06 52.6 4.8 31 292-322 201-232 (577)
13 TIGR00194 uvrC excinuclease AB 91.5 0.24 5.2E-06 52.5 4.8 31 292-322 196-227 (574)
14 PRK14672 uvrC excinuclease ABC 91.4 0.24 5.2E-06 53.6 4.6 31 292-322 207-238 (691)
15 PRK14667 uvrC excinuclease ABC 91.3 0.24 5.3E-06 52.4 4.6 33 291-323 200-233 (567)
16 PRK14670 uvrC excinuclease ABC 91.2 0.25 5.5E-06 52.4 4.6 32 292-323 179-211 (574)
17 PRK14671 uvrC excinuclease ABC 91.1 0.27 5.8E-06 52.6 4.6 31 292-322 217-248 (621)
18 PRK14669 uvrC excinuclease ABC 91.0 0.27 5.9E-06 52.7 4.6 33 291-323 204-237 (624)
19 COG0322 UvrC Nuclease subunit 88.6 0.56 1.2E-05 50.0 4.6 32 291-322 203-235 (581)
20 PF10130 PIN_2: PIN domain; I 40.1 20 0.00044 31.1 2.1 72 176-256 50-121 (133)
21 PF12510 Smoothelin: Smootheli 38.7 65 0.0014 24.4 4.2 31 292-324 24-54 (54)
22 PF14305 ATPgrasp_TupA: TupA-l 38.0 79 0.0017 29.8 5.8 46 172-217 173-220 (239)
23 PF12386 Peptidase_C71: Pseudo 37.5 1.1E+02 0.0023 27.1 6.0 43 175-217 56-99 (142)
24 PF13670 PepSY_2: Peptidase pr 32.8 2.2E+02 0.0047 22.1 6.7 48 178-229 29-76 (83)
25 KOG4825 Component of synaptic 31.9 33 0.00071 36.3 2.3 31 293-323 210-241 (666)
26 PF04420 CHD5: CHD5-like prote 30.3 35 0.00076 30.4 2.0 37 289-325 46-83 (161)
27 PF11464 Rbsn: Rabenosyn Rab b 29.8 1.6E+02 0.0034 21.2 4.8 35 290-324 3-38 (42)
28 COG5509 Uncharacterized small 28.3 70 0.0015 24.9 3.0 26 303-328 27-52 (65)
29 PRK13169 DNA replication intia 27.7 1.3E+02 0.0029 25.6 5.0 34 289-322 21-57 (110)
30 TIGR00638 Mop molybdenum-pteri 26.4 1.9E+02 0.0042 20.9 5.2 51 194-246 8-58 (69)
31 PHA02571 a-gt.4 hypothetical p 22.1 2.1E+02 0.0047 24.5 5.1 36 288-323 12-52 (109)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=6.7e-34 Score=243.97 Aligned_cols=120 Identities=30% Similarity=0.494 Sum_probs=102.2
Q ss_pred CCCCcEEEEEEeCCCceEEEEEE-cchHHHHHHHhhccCCCCCChHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEe
Q 020163 136 YAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLT 214 (330)
Q Consensus 136 ~a~~pvIVL~eedg~~r~LPI~I-e~eA~aI~~aL~~~~~~RPlTHDLL~~ile~lg~~v~~V~I~~~~dGvFyA~L~l~ 214 (330)
..++|++||++++++ +.||||| ..||.+|+.++++..++||+|||||.++++++|.++.+|+|++++||+|||+|+++
T Consensus 11 ~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L~l~ 89 (135)
T PF02577_consen 11 PSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYARLVLR 89 (135)
T ss_dssp TTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEEEEEe
Confidence 356789999999875 8999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020163 215 KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 259 (330)
Q Consensus 215 ~~g~~~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi~i~e 259 (330)
+++ ++..+|+||||||+||+|+++||||+++|++++|+++..
T Consensus 90 ~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~~ 131 (135)
T PF02577_consen 90 QGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVEE 131 (135)
T ss_dssp ETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--H
T ss_pred cCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCch
Confidence 776 789999999999999999999999999999999999874
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=240.32 Aligned_cols=123 Identities=27% Similarity=0.464 Sum_probs=112.2
Q ss_pred CCCCCCcEEEEEEeCCCceEEEEEE-cchHHHHHHHhhccCCCCCChHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEE
Q 020163 134 PDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLY 212 (330)
Q Consensus 134 d~~a~~pvIVL~eedg~~r~LPI~I-e~eA~aI~~aL~~~~~~RPlTHDLL~~ile~lg~~v~~V~I~~~~dGvFyA~L~ 212 (330)
.+-...|++++...+++++.||||| ..+|.+|+.++++..++||+||||+.++++.++.++.+|+|++++||||||+|+
T Consensus 14 ~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~L~ 93 (151)
T COG1259 14 VPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYATLI 93 (151)
T ss_pred ecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEEEE
Confidence 3345667677766777778999999 899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020163 213 LTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 259 (330)
Q Consensus 213 l~~~g~~~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi~i~e 259 (330)
+++++ ..+.+||||||||+||+|.++||||.|+|+++++++..+
T Consensus 94 ~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~ 137 (151)
T COG1259 94 LEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIED 137 (151)
T ss_pred EEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCcc
Confidence 99987 469999999999999999999999999999998888764
No 3
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.22 E-value=2.4e-06 Score=58.34 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163 290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 323 (330)
Q Consensus 290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~ 323 (330)
..+..|+..|..|++ ++||+||.|||+|..|+++
T Consensus 2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 356789999999998 9999999999999999864
No 4
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=98.16 E-value=2.5e-06 Score=76.76 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=34.9
Q ss_pred ChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020163 288 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 325 (330)
Q Consensus 288 ~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~~ 325 (330)
.+.++.+|++.|++.|+ |+||+||.+||||+.|+.+..
T Consensus 134 ~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~ 172 (176)
T COG3880 134 PKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKNG 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56889999999999998 999999999999999997653
No 5
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.66 E-value=0.047 Score=58.28 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhcc
Q 020163 290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRNL 326 (330)
Q Consensus 290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~~~ 326 (330)
..++.|+++|++|.+ ++||+||++||+|+.|++....
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~~~ 650 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEELLG 650 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 456778998999987 9999999999999999876543
No 6
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.46 E-value=0.053 Score=57.17 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020163 289 TKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 325 (330)
Q Consensus 289 ~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~~ 325 (330)
.+.++.|+++|.+|.+ -+||+||+|||+|++|++...
T Consensus 623 ~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~ 660 (663)
T COG0556 623 EKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELL 660 (663)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 3556778887777776 999999999999999997643
No 7
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.80 E-value=0.06 Score=57.71 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHH
Q 020163 290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLR 321 (330)
Q Consensus 290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~ 321 (330)
..++.|+++|++|.+ ++||+||++||+|+.|+
T Consensus 623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 345678888888887 99999999999999874
No 8
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=93.31 E-value=0.1 Score=55.48 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163 290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 324 (330)
Q Consensus 290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~ 324 (330)
.-++.|++.|++|.+ ++||+||++||+|..+++-.
T Consensus 202 ~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~ 237 (598)
T PRK00558 202 EVLKELEEKMEEASENLEFERAARYRDQIQALRRVQ 237 (598)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 345778888888887 99999999999999998643
No 9
>PRK07883 hypothetical protein; Validated
Probab=93.12 E-value=0.11 Score=54.68 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163 292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 322 (330)
Q Consensus 292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~ 322 (330)
++.|++.|++|-+ .+||+||++||+|..++.
T Consensus 408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 439 (557)
T PRK07883 408 LAALRARIDRLAAAERFEEAARLRDRLAALLR 439 (557)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5678888888887 999999999999999985
No 10
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=92.27 E-value=0.18 Score=52.93 Aligned_cols=32 Identities=9% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163 291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 322 (330)
Q Consensus 291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~ 322 (330)
-++.|++.|++|-+ .+||+||++||.|..++.
T Consensus 193 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~ 225 (519)
T PRK12306 193 LIEKLEEEMAEKAKNQQFERALVIRDEINAIEN 225 (519)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35678888888887 999999999999999984
No 11
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=91.92 E-value=0.19 Score=54.35 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163 291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 323 (330)
Q Consensus 291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~ 323 (330)
-++.|++.|++|.+ .+||+||++||+|+.++.-
T Consensus 202 l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~ 235 (694)
T PRK14666 202 LVDALRTEMEAASEALEFERAAVLRDQIRAVERT 235 (694)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35678888888887 9999999999999999853
No 12
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=91.54 E-value=0.24 Score=52.55 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163 292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 322 (330)
Q Consensus 292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~ 322 (330)
++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus 201 ~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~ 232 (577)
T PRK14668 201 ADPLRREMEAAAQAQEFERAANLRDRLEAVEA 232 (577)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4678888888887 999999999999999984
No 13
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=91.51 E-value=0.24 Score=52.50 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163 292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 322 (330)
Q Consensus 292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~ 322 (330)
++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus 196 ~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 227 (574)
T TIGR00194 196 IKELEQKMEKASENLEFEEAARIRDQIAAVRE 227 (574)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4668888888887 999999999999999984
No 14
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=91.36 E-value=0.24 Score=53.60 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163 292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 322 (330)
Q Consensus 292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~ 322 (330)
++.|++.|++|-+ .+||+||++||+|..++.
T Consensus 207 l~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~ 238 (691)
T PRK14672 207 VARLEKRMKRAVRQEAFEAAARIRDDIQAIRC 238 (691)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4678888888887 999999999999999984
No 15
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=91.32 E-value=0.24 Score=52.43 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163 291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 323 (330)
Q Consensus 291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~ 323 (330)
-++.|++.|++|-+ .+||+||++||+|..++.-
T Consensus 200 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~ 233 (567)
T PRK14667 200 VLPELYDKIEEYSQKLMFEKAAVIRDQILALENL 233 (567)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 35678888888887 9999999999999999753
No 16
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=91.21 E-value=0.25 Score=52.40 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163 292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 323 (330)
Q Consensus 292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~ 323 (330)
++.|++.|++|-+ .+||+||++||+|..++.-
T Consensus 179 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~~ 211 (574)
T PRK14670 179 LSQIEIKMKEAIQKEDFEAAIKLKETKRSLIEI 211 (574)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4678888888887 9999999999999999853
No 17
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=91.06 E-value=0.27 Score=52.64 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163 292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 322 (330)
Q Consensus 292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~ 322 (330)
++.|++.|++|-+ .+||+||++||+|..++.
T Consensus 217 ~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~ 248 (621)
T PRK14671 217 IRSLTEEMQRAAAELKFEEAAELKDQIESLKR 248 (621)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5678888888887 999999999999999974
No 18
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=90.99 E-value=0.27 Score=52.66 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163 291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 323 (330)
Q Consensus 291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~ 323 (330)
-++.|++.|++|-+ .+||+||++||+|+.++.-
T Consensus 204 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~ 237 (624)
T PRK14669 204 LARSLRARMEAAALEMQFELAAKYRDLITTVEEL 237 (624)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34678888888887 9999999999999998753
No 19
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=88.59 E-value=0.56 Score=49.96 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163 291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA 322 (330)
Q Consensus 291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~ 322 (330)
-+..|++.|++|-+ .+||.||++||+|..++.
T Consensus 203 v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~ 235 (581)
T COG0322 203 VLQELEEKMEEASENLDFERAARLRDQIKALEK 235 (581)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 35678888888887 999999999999999975
No 20
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=40.13 E-value=20 Score=31.08 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCe
Q 020163 176 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGM 255 (330)
Q Consensus 176 RPlTHDLL~~ile~lg~~v~~V~I~~~~dGvFyA~L~l~~~g~~~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi 255 (330)
+-++-+-+..++..+- ..|.|. .++.|. . +..+.. .....+|-.=-.-||||+..++||+....=+...|+
T Consensus 50 ~~l~~~~~~~~l~~l~---~~I~iv--~~~~~~-~-~~~~A~--~~~~~~D~~D~p~vALaL~l~~~IWT~Dkdl~~~Gl 120 (133)
T PF10130_consen 50 SKLSEEELEEVLNILF---SRIKIV--PEEIYS-E-NIEEAR--EIIRDRDPDDWPFVALALQLNAPIWTEDKDLFGSGL 120 (133)
T ss_pred hCCCHHHHHHHHHHHH---hheEEe--cHHHhH-H-HHHHHH--HHhcCCCcchHHHHHHHHHcCCCeecCcHHHHhcCc
Confidence 3455666666666552 233332 344443 1 111110 011234555555799999999999999988876665
Q ss_pred e
Q 020163 256 R 256 (330)
Q Consensus 256 ~ 256 (330)
.
T Consensus 121 ~ 121 (133)
T PF10130_consen 121 A 121 (133)
T ss_pred c
Confidence 4
No 21
>PF12510 Smoothelin: Smoothelin cytoskeleton protein; InterPro: IPR022189 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00307 from PFAM. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.
Probab=38.71 E-value=65 Score=24.37 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhHHhhh
Q 020163 292 FNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKR 324 (330)
Q Consensus 292 ~~~L~~~L~~aveE~YE~AA~lRDeI~~l~~~~ 324 (330)
.+.|++||+.+ .+||+=-.||-.|+.+++++
T Consensus 24 e~~L~kmLe~~--~dyeeRr~IRaaiR~lr~~~ 54 (54)
T PF12510_consen 24 EEVLEKMLEAT--TDYEERRRIRAAIRELRKKK 54 (54)
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHHHHHHhcC
Confidence 34566666554 68999999999999998753
No 22
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=38.04 E-value=79 Score=29.81 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=39.7
Q ss_pred cCCCCCChHHHHHHHHHHhC--CEEeEEEEEeEECCEEEEEEEEeecC
Q 020163 172 VQIARPTLYQVVKEMIEKMG--YEVRLVRVTKRVHEAYFAQLYLTKVG 217 (330)
Q Consensus 172 ~~~~RPlTHDLL~~ile~lg--~~v~~V~I~~~~dGvFyA~L~l~~~g 217 (330)
...+||-..+=|.++.+.|. ....||-.+...+++||..|.+..++
T Consensus 173 ~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 173 EDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGA 220 (239)
T ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCC
Confidence 46799999999999999994 56777778888999999999998665
No 23
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=37.50 E-value=1.1e+02 Score=27.15 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHHhCCEEeEEEEEeE-ECCEEEEEEEEeecC
Q 020163 175 ARPTLYQVVKEMIEKMGYEVRLVRVTKR-VHEAYFAQLYLTKVG 217 (330)
Q Consensus 175 ~RPlTHDLL~~ile~lg~~v~~V~I~~~-~dGvFyA~L~l~~~g 217 (330)
.--..-+||..+++.||+.|.-+.+--. .+|++|..+.|.-.+
T Consensus 56 NCtD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~ 99 (142)
T PF12386_consen 56 NCTDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKH 99 (142)
T ss_pred CchhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecc
Confidence 3445578999999999997766655543 599999999998765
No 24
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=32.81 E-value=2.2e+02 Score=22.05 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEeecCccceEEEEeCCh
Q 020163 178 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP 229 (330)
Q Consensus 178 lTHDLL~~ile~lg~~v~~V~I~~~~dGvFyA~L~l~~~g~~~e~~~IDaRP 229 (330)
++.+-+...++..|++|.+|.+++ +|.|-.+....++. .-.+.+|.+.
T Consensus 29 ~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~~dG~--~~ev~vD~~t 76 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARDKDGK--KVEVYVDPAT 76 (83)
T ss_pred CCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEECCCC--EEEEEEcCCC
Confidence 456777788888999999998864 77899986665542 1445555543
No 25
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=31.92 E-value=33 Score=36.30 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163 293 NLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 323 (330)
Q Consensus 293 ~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~ 323 (330)
++|++.--.||+ |+|..|-...|||.+++.+
T Consensus 210 eelEndKgcAVadEDfdlAkdkkdeiealRae 241 (666)
T KOG4825|consen 210 EELENDKGCAVADEDFDLAKDKKDEIEALRAE 241 (666)
T ss_pred HHHhhcccccccchhhhHHHHHHHHHHHHHHH
Confidence 334444444565 6666666666666666643
No 26
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.28 E-value=35 Score=30.35 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020163 289 TKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN 325 (330)
Q Consensus 289 ~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~~ 325 (330)
..|+..+++++.+.=. ++|-+.|++|-++++++++.+
T Consensus 46 ~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~ 83 (161)
T PF04420_consen 46 RKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELE 83 (161)
T ss_dssp HHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655433 899999999999998876553
No 27
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=29.81 E-value=1.6e+02 Score=21.20 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163 290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 324 (330)
Q Consensus 290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~ 324 (330)
.++..++.+++.|.. -+||+.+.|..-|+.|+...
T Consensus 3 eQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~ 38 (42)
T PF11464_consen 3 EQINIIESYIKQAKAARRFDEVATLEENLRELQDEI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 467889999999998 99999999999999887654
No 28
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=28.33 E-value=70 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHhhhHHHHHHHHHHHhHHhhhcccc
Q 020163 303 VEERYRDAAQWRDKLGQLRAKRNLRK 328 (330)
Q Consensus 303 veE~YE~AA~lRDeI~~l~~~~~~~~ 328 (330)
|.|--|+-|.|++||.+++.+.+.|+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556788999999999998876665
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.75 E-value=1.3e+02 Score=25.56 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHH---HHHHHHhHHh
Q 020163 289 TKEFNLVRNMLIAAVEERYRDAAQ---WRDKLGQLRA 322 (330)
Q Consensus 289 ~~e~~~L~~~L~~aveE~YE~AA~---lRDeI~~l~~ 322 (330)
..++..|++.+...++|+-+.-.+ ||+.|.++++
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467788999999999998887665 8999988743
No 30
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=26.36 E-value=1.9e+02 Score=20.88 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=38.9
Q ss_pred EeEEEEEeEECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEe
Q 020163 194 VRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVN 246 (330)
Q Consensus 194 v~~V~I~~~~dGvFyA~L~l~~~g~~~e~~~IDaRPSDAIALAlR~~~PIyV~ 246 (330)
.....|.++..+...+++.+.-++. ..+...+-+..+-.|+++-+-|+|+.
T Consensus 8 ~l~g~I~~i~~~g~~~~v~l~~~~~--~~l~a~i~~~~~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGDVNAEVDLLLGGG--TKLTAVITLESVAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECCCeEEEEEEECCC--CEEEEEecHHHHhhCCCCCCCEEEEE
Confidence 3456777777777788888887542 25666777888999999999999875
No 31
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=22.12 E-value=2.1e+02 Score=24.52 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHHHH-hhhHHHHHH----HHHHHhHHhh
Q 020163 288 DTKEFNLVRNMLIAAVE-ERYRDAAQW----RDKLGQLRAK 323 (330)
Q Consensus 288 ~~~e~~~L~~~L~~ave-E~YE~AA~l----RDeI~~l~~~ 323 (330)
...+++.+...+++.++ |.=.+|+++ |-||+||+..
T Consensus 12 ~d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL~~H 52 (109)
T PHA02571 12 TDEEVEELLSELQARNEAEAEKKAAKILKKNRREIKRLKKH 52 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34557788888888888 888889888 8899999753
Done!