Query 020163
Match_columns 330
No_of_seqs 266 out of 811
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 12:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjl_A Hypothetical protein TM 100.0 5.3E-38 1.8E-42 277.5 16.5 129 130-259 20-155 (164)
2 1e52_A Excinuclease ABC subuni 97.8 2.5E-05 8.7E-10 58.9 4.8 36 288-323 22-58 (63)
3 2d7d_A Uvrabc system protein B 95.7 0.0052 1.8E-07 63.6 3.5 34 290-323 626-660 (661)
4 1c4o_A DNA nucleotide excision 94.9 0.0044 1.5E-07 64.1 0.0 37 288-324 609-646 (664)
5 3pxg_A Negative regulator of g 67.5 4.8 0.00016 39.4 4.5 35 290-324 401-436 (468)
6 3syn_E ATP-binding protein YLX 63.6 5 0.00017 24.0 2.3 18 305-322 4-21 (23)
7 3v1a_A Computational design, M 56.8 17 0.00057 25.8 4.5 37 288-324 6-43 (48)
8 2fzt_A Hypothetical protein TM 32.9 47 0.0016 25.7 4.0 23 291-313 3-26 (79)
9 1yzm_A FYVE-finger-containing 31.2 92 0.0031 22.2 5.0 37 288-324 7-44 (51)
10 3he5_B Synzip2; heterodimeric 27.6 90 0.0031 21.8 4.3 20 305-324 27-47 (52)
11 1z0k_B FYVE-finger-containing 27.3 1.1E+02 0.0038 23.1 5.1 38 287-324 24-62 (69)
12 1z0j_B FYVE-finger-containing 22.4 1.5E+02 0.0051 21.8 4.9 37 288-324 14-51 (59)
No 1
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=100.00 E-value=5.3e-38 Score=277.48 Aligned_cols=129 Identities=24% Similarity=0.367 Sum_probs=118.9
Q ss_pred CCCCCCCCCCcEEEEEEeCCCceEEEEEE-cchHHHHHHHhhccCCCCCChHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 020163 130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 208 (330)
Q Consensus 130 ~G~Ld~~a~~pvIVL~eedg~~r~LPI~I-e~eA~aI~~aL~~~~~~RPlTHDLL~~ile~lg~~v~~V~I~~~~dGvFy 208 (330)
+.++|+++++|+|||++++++ |+||||| ..||.+|+.++++..++||+|||||.++++++|+++.+|+|++++||+||
T Consensus 20 gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l~dgtfy 98 (164)
T 1vjl_A 20 TLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFY 98 (164)
T ss_dssp EEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred EEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEeECCEEE
Confidence 789999999999999998875 8999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEEEEe------ecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020163 209 AQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 259 (330)
Q Consensus 209 A~L~l~------~~g~~~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi~i~e 259 (330)
|+|+|+ +++++.+.+++|+|||||||||+|+++||||+|+|++++|+++++
T Consensus 99 A~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~~~ 155 (164)
T 1vjl_A 99 ATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV 155 (164)
T ss_dssp EEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECCH
T ss_pred EEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCCcc
Confidence 999999 654333678999999999999999999999999999999999864
No 2
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.77 E-value=2.5e-05 Score=58.87 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163 288 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 323 (330)
Q Consensus 288 ~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~ 323 (330)
....++.|++.|.+|.+ ++||+||+|||+|+.|+.+
T Consensus 22 ~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 22 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34567889999999998 9999999999999999865
No 3
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.71 E-value=0.0052 Score=63.57 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163 290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK 323 (330)
Q Consensus 290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~ 323 (330)
+.++.|+++|++|.+ ++||+||+|||+|+.|+++
T Consensus 626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 456778888888887 9999999999999999754
No 4
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.92 E-value=0.0044 Score=64.09 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163 288 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 324 (330)
Q Consensus 288 ~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~ 324 (330)
..+.++.|+++|++|.+ ++||+||+|||+|+.|+++.
T Consensus 609 ~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~ 646 (664)
T 1c4o_A 609 LRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 646 (664)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 34567888988888887 99999999999999998764
No 5
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.53 E-value=4.8 Score=39.42 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163 290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 324 (330)
Q Consensus 290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~ 324 (330)
.+++.|+...+.++. ++|++|+.|++++.+++++.
T Consensus 401 ~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~ 436 (468)
T 3pxg_A 401 QKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQV 436 (468)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 456667777778887 99999999999999998654
No 6
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=63.56 E-value=5 Score=23.98 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHhHHh
Q 020163 305 ERYRDAAQWRDKLGQLRA 322 (330)
Q Consensus 305 E~YE~AA~lRDeI~~l~~ 322 (330)
.+|++||.||.++.+++.
T Consensus 4 nrydqaatlrakmekrer 21 (23)
T 3syn_E 4 NRYDQAATLRAKMEKRER 21 (26)
T ss_pred chHHHHHHHHHHHHHHhh
Confidence 589999999999888763
No 7
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=56.83 E-value=17 Score=25.84 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163 288 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 324 (330)
Q Consensus 288 ~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~ 324 (330)
...++.+++.+++.|.. -+||+.+.|..-|+.|+...
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 56788899999999998 99999999999999987654
No 8
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=32.87 E-value=47 Score=25.68 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHH-hhhHHHHHH
Q 020163 291 EFNLVRNMLIAAVE-ERYRDAAQW 313 (330)
Q Consensus 291 e~~~L~~~L~~ave-E~YE~AA~l 313 (330)
++.+++++.+.||+ |+||.--.|
T Consensus 3 ~I~EIEk~ID~aIE~edyE~L~~L 26 (79)
T 2fzt_A 3 NIDEIERKIDEAIEKEDYETLLSL 26 (79)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 46778899999998 999976555
No 9
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=31.18 E-value=92 Score=22.23 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=31.5
Q ss_pred ChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163 288 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 324 (330)
Q Consensus 288 ~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~ 324 (330)
...++..++.++++|.. -+|++.+.|-.-|+.|+...
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei 44 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 45778899999999998 99999999988888877543
No 10
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.64 E-value=90 Score=21.79 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=14.4
Q ss_pred hhhHH-HHHHHHHHHhHHhhh
Q 020163 305 ERYRD-AAQWRDKLGQLRAKR 324 (330)
Q Consensus 305 E~YE~-AA~lRDeI~~l~~~~ 324 (330)
.+.|+ -|.+||||.+|+.+.
T Consensus 27 qnlekiianlrdeiarlenev 47 (52)
T 3he5_B 27 QNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 34443 478999999998654
No 11
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=27.33 E-value=1.1e+02 Score=23.11 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=32.6
Q ss_pred cChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163 287 LDTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 324 (330)
Q Consensus 287 ~~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~ 324 (330)
...+++..++.++++|.+ -+||+.+.|-.-|+.|++..
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei 62 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 456788999999999998 99999999988888887654
No 12
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=22.43 E-value=1.5e+02 Score=21.78 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163 288 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR 324 (330)
Q Consensus 288 ~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~ 324 (330)
...++..+++++++|.. -+|++.+.|-.-|+.|++..
T Consensus 14 L~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei 51 (59)
T 1z0j_B 14 LLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 46788899999999998 99999999988888887543
Done!