Query 020164
Match_columns 330
No_of_seqs 142 out of 407
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 12:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xgw_A Epsin 4; ENTH, enthopro 100.0 1.7E-58 5.7E-63 412.0 16.3 157 8-164 17-174 (176)
2 3onk_A Epsin-3, ENT3; helix, p 100.0 2.4E-58 8.3E-63 401.7 16.9 148 16-163 2-150 (150)
3 1eyh_A Epsin; superhelix of he 100.0 3.6E-55 1.2E-59 379.0 17.4 143 21-163 1-143 (144)
4 1inz_A EPS15-interacting porte 100.0 1.2E-54 4.1E-59 377.5 3.8 143 8-150 6-148 (148)
5 1vdy_A Hypothetical protein (R 100.0 8.3E-35 2.9E-39 251.1 11.0 117 27-145 13-133 (140)
6 3zyl_A Phosphatidylinositol-bi 99.6 1.6E-15 5.5E-20 142.3 10.3 128 5-136 9-138 (271)
7 3zym_A Phosphatidylinositol-bi 99.6 1.6E-15 5.6E-20 144.6 10.1 128 5-136 9-138 (310)
8 1hx8_A Synapse-enriched clathr 99.2 5.8E-11 2E-15 112.2 10.2 129 6-138 5-146 (299)
9 1x5b_A Signal transducing adap 97.9 6.2E-05 2.1E-09 65.5 10.9 109 23-141 13-124 (163)
10 1elk_A Target of MYB1; superhe 97.9 0.00018 6.2E-09 62.1 13.0 111 24-142 15-130 (157)
11 3rru_A TOM1L1 protein; structu 97.9 0.00016 5.4E-09 62.6 12.6 114 24-141 15-129 (152)
12 3zyq_A Hepatocyte growth facto 97.9 8.9E-05 3E-09 67.4 10.8 110 22-141 5-117 (226)
13 1juq_A ADP-ribosylation factor 97.9 0.00014 4.9E-09 63.8 11.8 114 23-141 11-127 (171)
14 3ldz_A STAM-1, signal transduc 97.8 0.00018 6.1E-09 61.0 11.9 107 24-141 4-113 (140)
15 3g2s_A C-terminal fragment of 97.7 0.00045 1.5E-08 59.5 11.7 114 23-141 9-125 (149)
16 1mhq_A ADP-ribosylation factor 97.7 0.00076 2.6E-08 57.9 13.0 111 26-141 2-115 (148)
17 1dvp_A HRS, hepatocyte growth 97.7 0.00029 9.9E-09 63.3 10.9 110 24-141 4-114 (220)
18 1sz9_A PCF11 protein; RNA poly 72.3 34 0.0012 28.7 10.3 103 42-155 23-137 (144)
19 2jmf_B Neurogenic locus notch 69.8 2.3 7.8E-05 26.5 1.7 17 283-299 7-23 (26)
20 2ijq_A Hypothetical protein; s 65.6 12 0.0004 32.6 6.1 83 55-146 47-134 (161)
21 3fga_B Serine/threonine-protei 61.2 28 0.00096 34.4 8.6 87 48-142 277-366 (403)
22 4flb_A Regulation of nuclear P 59.3 56 0.0019 26.2 8.8 97 42-152 20-127 (132)
23 2npp_B PP2A, B subunit, serine 41.5 39 0.0013 33.7 6.1 82 54-142 315-399 (449)
24 3ut4_A CTHE_2751, putative unc 40.7 1.5E+02 0.005 25.1 8.7 90 32-139 38-127 (134)
25 3d9j_A RNA-binding protein 16; 40.3 1.6E+02 0.0054 24.4 10.6 117 25-154 6-136 (145)
26 2db0_A 253AA long hypothetical 26.1 93 0.0032 28.8 5.4 61 24-96 4-65 (253)
27 3qhp_A Type 1 capsular polysac 25.7 72 0.0025 24.8 4.2 33 128-160 126-158 (166)
28 4fu3_A Regulation of nuclear P 23.4 1.8E+02 0.0061 23.1 6.2 97 44-151 21-127 (135)
29 1deq_A Fibrinogen (alpha chain 23.2 4.1E+02 0.014 26.2 9.7 73 36-110 41-126 (390)
30 2pk2_A Cyclin-T1, protein TAT; 22.4 41 0.0014 32.0 2.5 24 127-150 232-256 (358)
31 2rmh_A Urocortin-3; CRF ligand 20.2 47 0.0016 22.7 1.7 26 135-160 10-35 (38)
32 2b4j_C PC4 and SFRS1 interacti 20.2 1.1E+02 0.0037 24.7 4.1 67 58-138 7-77 (98)
No 1
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=100.00 E-value=1.7e-58 Score=411.96 Aligned_cols=157 Identities=39% Similarity=0.809 Sum_probs=133.7
Q ss_pred HHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHh-ccCCCchhHHHHHHHH
Q 020164 8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRI-NDTGKNWRHVYKALTV 86 (330)
Q Consensus 8 ~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL-~~~gk~WR~VyKaL~L 86 (330)
.++.++|+|+|+|++||++|++|+||||||||||++++|+|||++||++++|.+||++||||| ++++++||||||||+|
T Consensus 17 ~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~L 96 (176)
T 1xgw_A 17 KVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLL 96 (176)
T ss_dssp -----------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999995 7889999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhccc
Q 020164 87 LEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT 164 (330)
Q Consensus 87 LEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~~ 164 (330)
|||||+||||+||+|+|+|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|++
T Consensus 97 LeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~ 174 (176)
T 1xgw_A 97 LAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVS 174 (176)
T ss_dssp HHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC-----------
T ss_pred HHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=100.00 E-value=2.4e-58 Score=401.69 Aligned_cols=148 Identities=42% Similarity=0.747 Sum_probs=133.5
Q ss_pred hcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccC-CCchhHHHHHHHHHHHHHHcC
Q 020164 16 VNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDT-GKNWRHVYKALTVLEYLVAHG 94 (330)
Q Consensus 16 vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~-gk~WR~VyKaL~LLEYLLkNG 94 (330)
++|+|++||++|++|+|||||||||||+++|+|||++||++.+|.+||++|||||+++ +++||||||||+||||||+||
T Consensus 2 ~~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 2 LMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ------CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 6799999999999999999999999999999999999999999999999999999986 689999999999999999999
Q ss_pred CHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhcc
Q 020164 95 SERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (330)
Q Consensus 95 SErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~ 163 (330)
||+||+|+|+|+++|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|+
T Consensus 82 se~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~~g~ 150 (150)
T 3onk_A 82 SERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETAKKYKGV 150 (150)
T ss_dssp CHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999885
No 3
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=100.00 E-value=3.6e-55 Score=379.04 Aligned_cols=143 Identities=49% Similarity=0.867 Sum_probs=140.5
Q ss_pred cCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 020164 21 LKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (330)
Q Consensus 21 ~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~ 100 (330)
.+||++|++|++|||||||||++++|++||++||++.+|.+||++|||||++++++||||||||+||||||+||||+||+
T Consensus 1 ~~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhcc
Q 020164 101 DIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (330)
Q Consensus 101 e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~ 163 (330)
|+++|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.+.
T Consensus 81 ~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~~L~~eR~~a~~~r~k~~~~ 143 (144)
T 1eyh_A 81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT 143 (144)
T ss_dssp HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=100.00 E-value=1.2e-54 Score=377.46 Aligned_cols=143 Identities=48% Similarity=0.864 Sum_probs=139.7
Q ss_pred HHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 020164 8 TFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVL 87 (330)
Q Consensus 8 ~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LL 87 (330)
+++.|+|+|+|+|++||++|++|++|||||||||++++|++||++||++.+|.+||++|||||++++++||||||||+||
T Consensus 6 ~~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~ll 85 (148)
T 1inz_A 6 STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLM 85 (148)
T ss_dssp CCCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHH
Q 020164 88 EYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVR 150 (330)
Q Consensus 88 EYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER 150 (330)
||||+||||+||+|+++|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||
T Consensus 86 eyLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~L~~eR 148 (148)
T 1inz_A 86 EYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148 (148)
T ss_dssp HHHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCSCCCCC
T ss_pred HHHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999887
No 5
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=100.00 E-value=8.3e-35 Score=251.14 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=110.8
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcCh--hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020164 27 EQKVLDATSNEPWGPHGTLLADIAQATRNY--HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (330)
Q Consensus 27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~--~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~ 104 (330)
+.||++|||||||||++.+|.|||++||+. +.|.+||++||+||+++ .|+++||||+||+||++|||++|+.++|.
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 679999999999999999999999999996 55799999999999986 57899999999999999999999999999
Q ss_pred hhhhhhccccceeeCC--CCCccchhHHHHHHHHHHhhcCHHH
Q 020164 105 HSYQISTLSDFQYIDS--SGRDQGSNVRKKSQSLVALVNDKER 145 (330)
Q Consensus 105 h~~~I~~L~~Fqy~D~--~GkD~G~nVR~KAk~Il~LL~D~e~ 145 (330)
|+++|++|.+|+|+++ +|+|+|++||++|++|++||.|++.
T Consensus 91 ~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 91 NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEEN 133 (140)
T ss_dssp TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSS
T ss_pred hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCC
Confidence 9999999999999975 8999999999999999999998764
No 6
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.61 E-value=1.6e-15 Score=142.33 Aligned_cols=128 Identities=23% Similarity=0.352 Sum_probs=110.9
Q ss_pred hhhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCchhHHHHH
Q 020164 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83 (330)
Q Consensus 5 ~~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~-~y~~Im~vLwKRL~~~gk~WR~VyKa 83 (330)
.+|++.|--.++|+.|.. +++|+.|..||++++|+|..+.+.+|..+|++.. .+..||..|++||. .++|++++||
T Consensus 9 ~~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~--~~~w~v~~Ka 85 (271)
T 3zyl_A 9 SGQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKS 85 (271)
T ss_dssp ---CHHHHHHHHHHHHHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT--SSCHHHHHHH
T ss_pred ccccHHHHHHHHHhcccc-hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC--CCchHHHHHH
Confidence 578888888899999988 9999999999999999999999999999999875 47999999999998 4799999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeC-CCCCccchhHHHHHHHH
Q 020164 84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYID-SSGRDQGSNVRKKSQSL 136 (330)
Q Consensus 84 L~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D-~~GkD~G~nVR~KAk~I 136 (330)
|+||.+||..|++.|+.+++.|.. |-.|.+|.... ..|.|++.-||.-|+-|
T Consensus 86 LivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL 138 (271)
T 3zyl_A 86 LITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (271)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhCCC-eechhccCCCCCCCcccccHHHHHHHHHH
Confidence 999999999999999999988875 55888875432 24567788899999877
No 7
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.60 E-value=1.6e-15 Score=144.57 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=110.4
Q ss_pred hhhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCchhHHHHH
Q 020164 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKA 83 (330)
Q Consensus 5 ~~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~-~y~~Im~vLwKRL~~~gk~WR~VyKa 83 (330)
.+|++.|=-.++|+.|.. ++.|+.|+.||++++|+|..+.+.+|..+|++.. .+..||..|++||. .++|++++||
T Consensus 9 ~~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~--~~~w~vv~Ka 85 (310)
T 3zym_A 9 SGQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKS 85 (310)
T ss_dssp ---CHHHHHHHHHHCCHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT--SSCHHHHHHH
T ss_pred ccccHHHHHHHHHhcccc-cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC--CCchHHHHHH
Confidence 467777777889998888 9999999999999999999999999999999875 47899999999998 4799999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeCC-CCCccchhHHHHHHHH
Q 020164 84 LTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS-SGRDQGSNVRKKSQSL 136 (330)
Q Consensus 84 L~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~-~GkD~G~nVR~KAk~I 136 (330)
|+||.+||..|++.|+.+++.|.. |-.|.+|.-... .|.+++..||.-|+-|
T Consensus 86 LivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL 138 (310)
T 3zym_A 86 LITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (310)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHhCCC-eeecccccCCCCcCcccccHHHHHHHHHH
Confidence 999999999999999999988875 448888853321 4567889999999877
No 8
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.19 E-value=5.8e-11 Score=112.25 Aligned_cols=129 Identities=23% Similarity=0.313 Sum_probs=90.9
Q ss_pred hhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHhccCCCchhHHHHHH
Q 020164 6 DQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH-EYQMIIGVIWKRINDTGKNWRHVYKAL 84 (330)
Q Consensus 6 ~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~-~y~~Im~vLwKRL~~~gk~WR~VyKaL 84 (330)
.|++++.-..+|+-.. -++.|+.|..||+.++|+|..+.+.+|..+|++.. ....++..|++|+ ..++|.+++|||
T Consensus 5 ~~~~~~~~~a~k~~~~-~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~--~~~~w~va~K~L 81 (299)
T 1hx8_A 5 GQTINDRLLAARHSLA-GQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERS--QNANWVVVYKSL 81 (299)
T ss_dssp ------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH--TCSSHHHHHHHH
T ss_pred hHHHHHHHHHHhhccc-hhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhc--cCCcHHHHHHHH
Confidence 4556665555664332 26899999999999999999999999999998873 4688999999996 445999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeC------------CCCCccchhHHHHHHHHHH
Q 020164 85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYID------------SSGRDQGSNVRKKSQSLVA 138 (330)
Q Consensus 85 ~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D------------~~GkD~G~nVR~KAk~Il~ 138 (330)
+||..||..|++.|+.++..+.. +-.|.+|.=.. +.|.|++..||.-|+-|.+
T Consensus 82 ivlH~llreG~~~~~~~l~~~~~-~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~ 146 (299)
T 1hx8_A 82 ITTHHLMAYGNERFMQYLASSNS-TFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE 146 (299)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTC-CCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCc-ccchhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 99999999999999999966533 34556662110 1234678899999975543
No 9
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=97.94 E-value=6.2e-05 Score=65.53 Aligned_cols=109 Identities=20% Similarity=0.154 Sum_probs=77.6
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020164 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (330)
Q Consensus 23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e 101 (330)
-+|.+..|..||+...-.|.-.+..+|++.-.. ...-.+.+..|.|||... +-...+-||+|||.|++|+...|-.+
T Consensus 13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 378899999999976667777778888877532 345678999999999853 44566779999999999998887766
Q ss_pred HHh--hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164 102 IRE--HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 102 ~r~--h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
+-. -+..|..|- ..+ .-..||+|+..++.-..
T Consensus 91 vas~~Fl~el~~l~-----~~~---~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 91 VCSRDFATEVRAVI-----KNK---AHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HTSHHHHHHHHHHH-----HTT---CCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH-----ccC---CCHHHHHHHHHHHHHHH
Confidence 633 222222111 111 12479999998887654
No 10
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=97.90 E-value=0.00018 Score=62.08 Aligned_cols=111 Identities=22% Similarity=0.189 Sum_probs=80.8
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (330)
Q Consensus 24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~ 102 (330)
|+++..|..||+...-.|.-...-+|++.-.. ...-.+.+..|.|||.. .++...++-||+|||.|++|+-..|-.++
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~-~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVG-NKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 58899999999977667777888888887532 34668999999999974 34677779999999999999988888777
Q ss_pred Hh--hhhh--hhccccceeeCCCCCccchhHHHHHHHHHHhhcC
Q 020164 103 RE--HSYQ--ISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND 142 (330)
Q Consensus 103 r~--h~~~--I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D 142 (330)
-+ -+.. ++.+. +++ +.-..||+|+.+++.-..+
T Consensus 94 a~~~fl~e~Lvk~~~------~k~-~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 94 ASQDFVESVLVRTIL------PKN-NPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp TSHHHHHHHTHHHHS------TTT-CCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc------cCC-CCcHHHHHHHHHHHHHHHH
Confidence 43 2222 22221 111 1235899999888876553
No 11
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=97.89 E-value=0.00016 Score=62.64 Aligned_cols=114 Identities=10% Similarity=0.108 Sum_probs=79.9
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (330)
Q Consensus 24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~ 102 (330)
|+++..|..||+..--.|.-...-+|++.-.. ...-.+.|..|.|||. .+++.+.++-||+|||-|++|+-..|-.++
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~-~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRIS-KNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-TCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 89999999999966555665677788877532 3456899999999997 445777777799999999999999999888
Q ss_pred HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164 103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 103 r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
-..-++-+.|... +.+.. ..-..||+|+..++.-..
T Consensus 94 ask~Fl~e~L~kl--~~~~~-~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 94 VKKEFVKENLVKL--LNPRY-NLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp SSHHHHTTTTGGG--GSGGG-CCCHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHH--hcCCC-CCcHHHHHHHHHHHHHHH
Confidence 4332211112211 11110 123479999888887554
No 12
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=97.85 E-value=8.9e-05 Score=67.35 Aligned_cols=110 Identities=24% Similarity=0.225 Sum_probs=80.6
Q ss_pred CCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 020164 22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (330)
Q Consensus 22 n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~ 100 (330)
.-++.|..|..||+...-.|.-....+|++.-... ..=.+.|..|.|||.. ++-..++-||+|||.|++|+..+|-.
T Consensus 5 ~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 5 GSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp --CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34789999999999877777778888888886543 3357899999999984 57778999999999999998887777
Q ss_pred HH--HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164 101 DI--REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 101 e~--r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
++ ++-+..|..|- . ......|++|+.+|+.-..
T Consensus 83 eias~~fl~~l~~l~-----~---~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 83 EVANKQTMEELKDLL-----K---RQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHSSHHHHHHHHHHH-----H---HCCCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHh-----c---cCCCHHHHHHHHHHHHHHH
Confidence 76 23233332221 1 1123579999988887543
No 13
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=97.85 E-value=0.00014 Score=63.76 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=81.8
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020164 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (330)
Q Consensus 23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e 101 (330)
.|+.+..|..||+...-.|.-....+|++.-.. ...-.+.+..|.|||.. ++-...+-||+|||.|++||...|-.+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~--~n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQS--PQEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 478899999999976666777788888887533 34567899999999985 367788999999999999998888777
Q ss_pred HHhh--hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164 102 IREH--SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 102 ~r~h--~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
+-+. +..|..|-.=.| .|...-..||+|+.+++.-..
T Consensus 89 vas~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKY---LGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HTSHHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence 6432 332222211011 123345799999998887654
No 14
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=97.85 E-value=0.00018 Score=61.03 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=78.3
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (330)
Q Consensus 24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~ 102 (330)
+|.+..|..||+...-.|.-....+|++.-.. ...-.+.|..|.|||... +-...+-||+|||.|++||-.+|-.++
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 78899999999986667777788888888654 345678999999999764 566788999999999999988777665
Q ss_pred --HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164 103 --REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 103 --r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
++-+..+..|-. ..-..|++|+..++.-..
T Consensus 82 as~~Fl~el~~l~~---------~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 82 CSRDFASEVSNVLN---------KGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp SSHHHHHHHHHHHH---------HSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHH
Confidence 333332322211 012479999888886543
No 15
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=97.67 E-value=0.00045 Score=59.54 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=83.1
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020164 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (330)
Q Consensus 23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e 101 (330)
-++.+..|..||+...-.|.-....+|++.-.. ...-...|..|.|||.. ++-...+-||+|||-|++|+-.+|-.+
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 388899999999987777787889999998644 34567899999999984 578888999999999999999988777
Q ss_pred HHh--hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164 102 IRE--HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 102 ~r~--h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
+-. -+..|..|-.=+| .|...-..||+|+..++.-..
T Consensus 87 ias~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 87 VGKFRFLNELIKVVSPKY---LGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HTSHHHHHHHHHHHCTTT---TGGGSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHcccc---cCCCCCHHHHHHHHHHHHHHH
Confidence 733 2322221111011 122234689999988886553
No 16
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=97.66 E-value=0.00076 Score=57.87 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020164 26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (330)
Q Consensus 26 ~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~ 104 (330)
.+..|..||+...-.|.-....+|++.-.. ...-...|..|.|||.. ++-...+-||+|||.|++|+...|-.++-+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 478899999966666666778888887533 34568899999999974 577888999999999999999988777733
Q ss_pred --hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164 105 --HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 105 --h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
-+..|..|-.=+| .|...-..||+|+..++.-..
T Consensus 80 ~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 80 FRFLNELIKVLSPKY---LGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTTCCST---TSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence 3332222211011 122335689999988887554
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.66 E-value=0.00029 Score=63.30 Aligned_cols=110 Identities=22% Similarity=0.213 Sum_probs=77.8
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020164 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (330)
Q Consensus 24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~ 102 (330)
|+.+..|..||+...-.|.-.++.+|++.-.. ...=.+.+..|.|||.. ++-...+-||+|||.|++|+-..|-.++
T Consensus 4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 57899999999976667777788888888643 33567899999999986 4778899999999999999877776665
Q ss_pred HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020164 103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 103 r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
-+.- .+..|..+ +.. ..-..||+|+.+|++-..
T Consensus 82 a~~~-fl~~l~~l--~~~---~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 82 FTKE-NCEMFSSF--LES---TPHENVRQKMLELVQTWA 114 (220)
T ss_dssp SSHH-HHHHHHHH--HHH---CSCHHHHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHH--hcC---CCcHHHHHHHHHHHHHHH
Confidence 3211 12222211 110 123578888887776554
No 18
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=72.34 E-value=34 Score=28.66 Aligned_cols=103 Identities=11% Similarity=0.137 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhhhhhhhccc-cceeeC
Q 020164 42 HGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLS-DFQYID 119 (330)
Q Consensus 42 t~s~L~EIA~~T-yn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h~~~I~~L~-~Fqy~D 119 (330)
+....+.|..+. .+......|+++|.++|... .-.+-+=+|-|++-+++|....++..|-.++..+ +. -|.-.
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~--~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~--f~~~~~~~- 97 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKC--MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNL--YKRTYLLV- 97 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHH--HHHHHHTS-
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHH--HHHHHHhC-
Confidence 444444444433 46778899999999999764 3566778999999999997777877776665432 11 12112
Q ss_pred CCCCccchhHHHHHHHHHHhhcCH----------HHHHHHHHHHHH
Q 020164 120 SSGRDQGSNVRKKSQSLVALVNDK----------ERIIEVRQKAAA 155 (330)
Q Consensus 120 ~~GkD~G~nVR~KAk~Il~LL~D~----------e~L~eER~kA~k 155 (330)
...+|.|..+|+..=... +.|+.-|..-.+
T Consensus 98 ------d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 98 ------DNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIK 137 (144)
T ss_dssp ------CHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHh
Confidence 248999999999887655 777776665444
No 19
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=69.81 E-value=2.3 Score=26.52 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=13.1
Q ss_pred ccCCCCCCChHHHhhhc
Q 020164 283 EQNIGAPPSYEEAVSES 299 (330)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ 299 (330)
.....+||+||+.+...
T Consensus 7 ntgakqppsyedcik~~ 23 (26)
T 2jmf_B 7 NTGAKQPPSYEDCIKXX 23 (26)
T ss_pred CCCCCCCCCHHHHHHhh
Confidence 44577899999998754
No 20
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.61 E-value=12 Score=32.60 Aligned_cols=83 Identities=7% Similarity=0.081 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHHHhccCCCchhHHHHHHHH----HHHHHHcCCHHH-HHHHHhhhhhhhccccceeeCCCCCccchhH
Q 020164 55 NYHEYQMIIGVIWKRINDTGKNWRHVYKALTV----LEYLVAHGSERV-IDDIREHSYQISTLSDFQYIDSSGRDQGSNV 129 (330)
Q Consensus 55 n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~L----LEYLLkNGSErv-V~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nV 129 (330)
.+-++.+|++-+|+.......+ |.++++|+. --|=+.+|..+- +.-++.-+..|+.+. ....|+.|
T Consensus 47 ~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~--------~~~~GIDv 117 (161)
T 2ijq_A 47 EFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP--------NDYYGVDL 117 (161)
T ss_dssp CHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC--------TTGGGBCH
T ss_pred CchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC--------CccCCcCH
Confidence 3556789999999988654333 777777766 345567787753 333344444444332 13578888
Q ss_pred HHHHHHHHHhhcCHHHH
Q 020164 130 RKKSQSLVALVNDKERI 146 (330)
Q Consensus 130 R~KAk~Il~LL~D~e~L 146 (330)
......|-++|.|++.+
T Consensus 118 ~~L~~~~~~~l~dp~~~ 134 (161)
T 2ijq_A 118 LDVRTTVTNALSDPSAL 134 (161)
T ss_dssp HHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHhhCCccC
Confidence 88888888888888755
No 21
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=61.17 E-value=28 Score=34.35 Aligned_cols=87 Identities=13% Similarity=0.234 Sum_probs=57.6
Q ss_pred HHHHHhcChhhHHHHHHHHHHHhcc--CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhhhhhhhccccceee-CCCCCc
Q 020164 48 DIAQATRNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYI-DSSGRD 124 (330)
Q Consensus 48 EIA~~Tyn~~~y~~Im~vLwKRL~~--~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~-D~~GkD 124 (330)
+|.+. -+..+|..||..|.++|.. ...+....-.||.+. ..+.++.-+.+|...|=.+- |.-. .-.-..
T Consensus 277 ~iLe~-~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w------nNe~i~~li~~n~~~IlPii-~p~L~~~~~~H 348 (403)
T 3fga_B 277 EILDV-IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW------NNEYIMSLISDNAAKILPIM-FPSLYRNSKTH 348 (403)
T ss_dssp HHHTT-CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG------GCHHHHHHHHTTHHHHHHHH-HHHHHHTTSCC
T ss_pred HHHHh-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh------ccHHHHHHHHHhHHHHHHHH-HHHHHHHHHHc
Confidence 34443 4778999999999999974 445788888888776 34566666666654432221 1100 111246
Q ss_pred cchhHHHHHHHHHHhhcC
Q 020164 125 QGSNVRKKSQSLVALVND 142 (330)
Q Consensus 125 ~G~nVR~KAk~Il~LL~D 142 (330)
|-..||..|..++.+|.|
T Consensus 349 Wn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 349 WNKTIHGLIYNALKLFME 366 (403)
T ss_dssp SCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 788999999999999954
No 22
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=59.34 E-value=56 Score=26.21 Aligned_cols=97 Identities=10% Similarity=0.117 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcC----CHHHHHHHHhhhhhhhccccce
Q 020164 42 HGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHG----SERVIDDIREHSYQISTLSDFQ 116 (330)
Q Consensus 42 t~s~L~EIA~~T-yn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNG----SErvV~e~r~h~~~I~~L~~Fq 116 (330)
|-.-...++... .+.+....|+++|.++|.....+ +-+-.|-|++-+|+|. ...++..|...+..+ |.
T Consensus 20 s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~--~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~-----~~ 92 (132)
T 4flb_A 20 TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYP--HRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEA-----AA 92 (132)
T ss_dssp SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHH-----HH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChh--hHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH-----HH
Confidence 444455566655 56778899999999999876543 4567899999999986 345666665554322 21
Q ss_pred ee-CCCCCccchhHHHHHHHHHHhhc-----CHHHHHHHHHH
Q 020164 117 YI-DSSGRDQGSNVRKKSQSLVALVN-----DKERIIEVRQK 152 (330)
Q Consensus 117 y~-D~~GkD~G~nVR~KAk~Il~LL~-----D~e~L~eER~k 152 (330)
.+ ++ .+|+|..+|+++-+ +++.|.+-|..
T Consensus 93 ~~~~~-------~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~ 127 (132)
T 4flb_A 93 LVKDP-------SVSKSVERIFKIWEDRNVYPEEMIVALREA 127 (132)
T ss_dssp TTCST-------TTHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhCCH-------HHHHHHHHHHHHhccCCCcCHHHHHHHHHH
Confidence 11 22 45788888888765 47777766653
No 23
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=41.52 E-value=39 Score=33.72 Aligned_cols=82 Identities=11% Similarity=0.198 Sum_probs=53.2
Q ss_pred cChhhHHHHHHHHHHHhcc--CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeCCC-CCccchhHH
Q 020164 54 RNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSS-GRDQGSNVR 130 (330)
Q Consensus 54 yn~~~y~~Im~vLwKRL~~--~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~-GkD~G~nVR 130 (330)
-...+|..||.-|.++|.. ...+....-.||.++. .+.++.-+.+|...|=.+ =|.-...+ -..|-..||
T Consensus 315 ~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~------N~~i~~li~~n~~~IlPi-i~p~L~~~s~~HWn~~V~ 387 (449)
T 2npp_B 315 IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN------NEYIMSLISDNAAKILPI-MFPSLYRNSKTHWNKTIH 387 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG------CHHHHHHHHTTHHHHHHH-HHHHHTSCTTCCSSTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC------CHHHHHHHHhchhhhHHh-hHHHHHHHHHHhcCHHHH
Confidence 4778999999999999975 4567888888887762 344444445454433111 01101111 245788999
Q ss_pred HHHHHHHHhhcC
Q 020164 131 KKSQSLVALVND 142 (330)
Q Consensus 131 ~KAk~Il~LL~D 142 (330)
..|..++.+|.+
T Consensus 388 ~la~~vlk~l~e 399 (449)
T 2npp_B 388 GLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 24
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=40.72 E-value=1.5e+02 Score=25.09 Aligned_cols=90 Identities=8% Similarity=0.092 Sum_probs=64.8
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhhhhhhhc
Q 020164 32 DATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQIST 111 (330)
Q Consensus 32 EATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h~~~I~~ 111 (330)
+=.-+-+|.+...+..-++.. . ..++..|++-|.+....|. .-||+||+.+=+...+..++.-+..|-.
T Consensus 38 ~WLQD~NWPvA~~i~~~L~~~--~----~~l~p~I~~vl~s~D~~W~-----ywil~~lv~~~~~~~~~~l~~eL~rl~~ 106 (134)
T 3ut4_A 38 KWLQDYNWPIAKDILPVVVLH--Q----SIAMPHILTILQGNDIMWK-----YWVIKLMIPYLIYPNKQLVKSELERLSS 106 (134)
T ss_dssp GGGSCTTSTTHHHHHHHHHHT--H----HHHHHHHHHHHHSSCHHHH-----HHHHHHHGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCccHHHHHHHHHHc--c----HhhHHHHHHHHHcCChHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 333466898887766666642 1 4677788888877777786 3589999999999988888876655432
Q ss_pred cccceeeCCCCCccchhHHHHHHHHHHh
Q 020164 112 LSDFQYIDSSGRDQGSNVRKKSQSLVAL 139 (330)
Q Consensus 112 L~~Fqy~D~~GkD~G~nVR~KAk~Il~L 139 (330)
.+...+.-..|.+.|++|+.-
T Consensus 107 -------~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 107 -------LEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp -------CCCSSGGGHHHHHHHHHHHHH
T ss_pred -------CCCcchHHHHHHHHHHHHHHH
Confidence 245567778889999998864
No 25
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=40.25 E-value=1.6e+02 Score=24.41 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=78.5
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCH-------
Q 020164 25 GIEQKVLDATSNEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE------- 96 (330)
Q Consensus 25 ~~E~kVrEATsnDpWGPt~s~L~EIA~~T-yn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSE------- 96 (330)
+.|.++.+-+...|- .+.+.++.|+.+. .+...+..|+.+|.+++.... -.+-+=.|-|++=+++|.-.
T Consensus 6 ~f~~~L~~L~~~k~~-~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~--~~~KL~~LYL~DsIvrn~~~k~~~~~~ 82 (145)
T 3d9j_A 6 TFNSELYSLNDYKPP-ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCK--PEYKVPGLYVIDSIVRQSRHQFGQEKD 82 (145)
T ss_dssp HHHHHHHGGGGSCSS-CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ccceeehhhhhHHHHHHhhhhcCCccc
Confidence 345555555444422 6677777777755 667788999999999997754 34668899999999999655
Q ss_pred HHHHHHHhhhhh-hhccccceeeCCCCCccchhHHHHHHHHHHhhc-----CHHHHHHHHHHHH
Q 020164 97 RVIDDIREHSYQ-ISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN-----DKERIIEVRQKAA 154 (330)
Q Consensus 97 rvV~e~r~h~~~-I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~-----D~e~L~eER~kA~ 154 (330)
.++..|-..+.. +..+ | . ....+|.|..+|+++=. .++.|+.-|....
T Consensus 83 ~f~~~F~~~L~~~f~~~--~----~----~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 83 VFAPRFSNNIISTFQNL--Y----R----CPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp SHHHHHHHHHHHHHHHH--T----S----SCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--H----h----CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 567666544432 2211 1 1 12578899999998754 6778877776654
No 26
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=26.07 E-value=93 Score=28.77 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=41.1
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHH-HHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCH
Q 020164 24 PGIEQKVLDATSNEPWGPHGTLLAD-IAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE 96 (330)
Q Consensus 24 S~~E~kVrEATsnDpWGPt~s~L~E-IA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSE 96 (330)
.+-|..||||.-+ |.++.+ |++++|+. +|++.+.+-|.+. -|...-.||.||--+.+-=++
T Consensus 4 e~~e~d~realat------ge~~~eii~~a~~d~----~~l~~lI~~LDDD--lwtV~kNAl~vi~~i~~~~~e 65 (253)
T 2db0_A 4 EEEEFDIREALAN------GEHLEKILIMAKYDE----SVLKKLIELLDDD--LWTVVKNAISIIMVIAKTRED 65 (253)
T ss_dssp -----CHHHHHHT------TCSHHHHHHHHHHCH----HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCGG
T ss_pred hHhhhhHHHHHhh------hhhHHHHHHHHHhhH----HHHHHHHHHhccH--HHHHHHhHHHHHHHHHHHhHH
Confidence 4568899999854 456776 57888995 5666666666655 799999999998877655443
No 27
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=25.68 E-value=72 Score=24.79 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q 020164 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (330)
Q Consensus 128 nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky 160 (330)
.+...|+.|..|++|++.+++.++++++.-++|
T Consensus 126 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 158 (166)
T 3qhp_A 126 NAKDLSAKIDWWLENKLERERMQNEYAKSALNY 158 (166)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHC
Confidence 578889999999999999999888888766666
No 28
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=23.36 E-value=1.8e+02 Score=23.11 Aligned_cols=97 Identities=10% Similarity=0.122 Sum_probs=60.7
Q ss_pred HHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCC---HHHHHHHHhhhhhh-hccccceee
Q 020164 44 TLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGS---ERVIDDIREHSYQI-STLSDFQYI 118 (330)
Q Consensus 44 s~L~EIA~~T-yn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGS---ErvV~e~r~h~~~I-~~L~~Fqy~ 118 (330)
.-...++.+. .+......|+++|.++|.....+ +-+-.|-|++-+|+|.. ..++..|..++..+ ..+ |.-.
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~--~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~--~~~~ 96 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN--RKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHV--AREA 96 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT--THHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HHcC
Confidence 3344555554 55677899999999999875543 34678889999988852 34666666654432 211 1111
Q ss_pred CCCCCccchhHHHHHHHHHHhhc-----CHHHHHHHHH
Q 020164 119 DSSGRDQGSNVRKKSQSLVALVN-----DKERIIEVRQ 151 (330)
Q Consensus 119 D~~GkD~G~nVR~KAk~Il~LL~-----D~e~L~eER~ 151 (330)
+ ..+|+|..+|+++-+ +++.|++-|.
T Consensus 97 ~-------~~~k~kl~kll~iW~~r~vf~~~~i~~L~~ 127 (135)
T 4fu3_A 97 D-------EGCKKPLERLLNIWQERSVYGGEFIQQLKL 127 (135)
T ss_dssp H-------TTSSHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 2 246778888888754 4666665554
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.19 E-value=4.1e+02 Score=26.21 Aligned_cols=73 Identities=12% Similarity=0.259 Sum_probs=36.3
Q ss_pred CCCCCC---CHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHc------CCH----HHHHHH
Q 020164 36 NEPWGP---HGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH------GSE----RVIDDI 102 (330)
Q Consensus 36 nDpWGP---t~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkN------GSE----rvV~e~ 102 (330)
.+.||+ ++=.|..+..-+- .++..-|+.|..+|.+-.+.-..++--.+.|-=+|+. ..+ ++.++|
T Consensus 41 DeDwG~kCPsGCrLqg~Ldk~e--r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 41 DEDWNTKCPSGCRMKGLIDEVD--QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred hhhccCCCCccchHHHHHHHhh--hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 456764 5555555443331 4556666677777765444444444433333333332 233 344556
Q ss_pred Hhhhhhhh
Q 020164 103 REHSYQIS 110 (330)
Q Consensus 103 r~h~~~I~ 110 (330)
+.|+..|+
T Consensus 119 e~~i~~lk 126 (390)
T 1deq_A 119 RSRIEILR 126 (390)
T ss_pred HHHHHHHH
Confidence 66665553
No 30
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=22.42 E-value=41 Score=31.98 Aligned_cols=24 Identities=4% Similarity=0.250 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHhhcC-HHHHHHHH
Q 020164 127 SNVRKKSQSLVALVND-KERIIEVR 150 (330)
Q Consensus 127 ~nVR~KAk~Il~LL~D-~e~L~eER 150 (330)
..|++.+++|++++.. ++.|+.-+
T Consensus 232 ~~l~~i~~~il~~y~~~~~~L~~i~ 256 (358)
T 2pk2_A 232 ELLDELTHEFLQILEKTPNRLKRIW 256 (358)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccchh
Confidence 4799999999999864 44454433
No 31
>2rmh_A Urocortin-3; CRF ligand, sauvagine, astressin2B, urotensins, CRF receptors, amidation, hormone, secreted; NMR {Synthetic}
Probab=20.22 E-value=47 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=20.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHHhhhhh
Q 020164 135 SLVALVNDKERIIEVRQKAAANRDKF 160 (330)
Q Consensus 135 ~Il~LL~D~e~L~eER~kA~knR~Ky 160 (330)
+|+..|-+-.+-+.+|++|+.||.=+
T Consensus 10 ~ll~~l~e~Ara~~~r~qAa~Na~ll 35 (38)
T 2rmh_A 10 NIMNLLFNIAKAKNLRAQAAANAHLM 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46677777889999999999988643
No 32
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=20.21 E-value=1.1e+02 Score=24.68 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHhhhh---hhhccccceeeCCCCCccchhHHHHH
Q 020164 58 EYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH-GSERVIDDIREHSY---QISTLSDFQYIDSSGRDQGSNVRKKS 133 (330)
Q Consensus 58 ~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkN-GSErvV~e~r~h~~---~I~~L~~Fqy~D~~GkD~G~nVR~KA 133 (330)
.+.++-..|...|.-.+. .|-|||.+||-|-.= .+.. -++.|-. .|+.|++| . | ...||++|
T Consensus 7 ~l~~L~~~ik~~L~~~~~---Dv~kcl~~L~~l~~l~~T~~---mL~rnpe~V~t~kklRry--~---g---~q~Ir~kA 72 (98)
T 2b4j_C 7 RLQRIHAEIKNSLKIDNL---DVNRCIEALDELASLQVTMQ---QAQKHTEMITTLKKIRRF--K---V---SQVIMEKS 72 (98)
T ss_dssp HHHHHHHHHHHHTCTTSC---CHHHHHHHHHHHHTCCCCHH---HHHTTHHHHHHHHHHTTC--T---T---CHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCC---CHHHHHHHHHHHhcccccHH---HHhhChHHHHHHHHHHHH--h---c---hHHHHHHH
Confidence 455666667777754322 366888888877543 2221 1334433 44555555 2 2 15777777
Q ss_pred HHHHH
Q 020164 134 QSLVA 138 (330)
Q Consensus 134 k~Il~ 138 (330)
..|..
T Consensus 73 ~~iY~ 77 (98)
T 2b4j_C 73 TMLYN 77 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
Done!