BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020165
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 131/242 (54%), Gaps = 25/242 (10%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
+N KNRYT+ILP+D +RV L + YINA+ I +S + ++IATQGPLP
Sbjct: 57 MNRCKNRYTNILPYDFSRVRLVSMNE--EEGSDYINANYIPGYNSPQ--EYIATQGPLPE 112
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T DFW+MV+Q +IVMLT+ + + VKC Y+ + P +G+I V + T
Sbjct: 113 TRNDFWKMVLQQKSQIIVMLTQ-CNEKRRVKCDHYWPFTEDPIAYGDI-TVEMLSEEEHT 170
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP----PNFG 260
V RN ++Y + + V+H Y WPDHGVP A IL+ + + + G
Sbjct: 171 DWVYRNFRISYADEVQ---DVMHFNYTAWPDHGVPTAN-AAESILQFVQMVRQKSVKSKG 226
Query: 261 PIVVHCSAGIGRTGAYCTIHNTVQRI----------LVGDMSALDLANT-VKEQYIFCHQ 309
P+++HCSAG+GRTG + + +Q I LV DM + ++ +EQYIF HQ
Sbjct: 227 PMIIHCSAGVGRTGTFIALDWLLQHIRDHEFVDILGLVSDMRSYRMSMVQTEEQYIFIHQ 286
Query: 310 AI 311
+
Sbjct: 287 CV 288
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 25/242 (10%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
+N KNRYT+ILP+D +RV L + A YINA+ I +S + ++IATQGPLP
Sbjct: 48 LNRCKNRYTNILPYDFSRVRLVSMNEEEGA--DYINANYIPGYNSPQ--EYIATQGPLPE 103
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T DFW+MV+Q +IVMLT+ + + VKC Y+ + P +G+I V + +
Sbjct: 104 TRNDFWKMVLQQKSQIIVMLTQ-CNEKRRVKCDHYWPFTEEPIAYGDI-TVEMISEEEQD 161
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFG 260
R+ +NY + + V+H Y WPDHGVP A IL+ ++ + + G
Sbjct: 162 DWACRHFRINYADEMQ---DVMHFNYTAWPDHGVPTAN-AAESILQFVHMVRQQATKSKG 217
Query: 261 PIVVHCSAGIGRTGAYCTIHNTVQRI----------LVGDMSALDLANT-VKEQYIFCHQ 309
P+++HCSAG+GRTG + + +Q I LV +M + ++ +EQYIF HQ
Sbjct: 218 PMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQ 277
Query: 310 AI 311
+
Sbjct: 278 CV 279
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 25/242 (10%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
+N KNRYT+ILP+D +RV L + A YINA+ I +S + ++IATQGPLP
Sbjct: 50 LNRCKNRYTNILPYDFSRVRLVSMNEEEGA--DYINANYIPGYNSPQ--EYIATQGPLPE 105
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T DFW+MV+Q +IVMLT+ + + VKC Y+ + P +G+I V + +
Sbjct: 106 TRNDFWKMVLQQKSQIIVMLTQ-CNEKRRVKCDHYWPFTEEPIAYGDI-TVEMISEEEQD 163
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFG 260
R+ +NY + + V+H Y WPDHGVP A IL+ ++ + + G
Sbjct: 164 DWACRHFRINYADEMQ---DVMHFNYTAWPDHGVPTAN-AAESILQFVHMVRQQATKSKG 219
Query: 261 PIVVHCSAGIGRTGAYCTIHNTVQRI----------LVGDMSALDLANT-VKEQYIFCHQ 309
P+++HCSAG+GRTG + + +Q I LV +M + ++ +EQYIF HQ
Sbjct: 220 PMIIHCSAGVGRTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQ 279
Query: 310 AI 311
+
Sbjct: 280 CV 281
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 143/289 (49%), Gaps = 34/289 (11%)
Query: 53 KSREISQEFARLQAS----------RIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNR 102
K + F +LQA +K + C +AL N KNRY +ILP+D R
Sbjct: 24 KINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATR 83
Query: 103 VVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIV 162
V L D YINAS I ++ + ++I TQGPLP T +DFW+MV + + IV
Sbjct: 84 VKLSNVDD--DPCSDYINASYIPGNNFRR--EYIVTQGPLPGTKDDFWKMVWEQNVHNIV 139
Query: 163 MLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPP 222
M+T+ V+ + VKC Y+ A+ +G++ I+ ++ +R ++ +E +
Sbjct: 140 MVTQCVEKGR-VKCDHYWPADQDSLYYGDL-ILQMLSESVLPEWTIREFKICGEEQLDAH 197
Query: 223 MSVLHIQYPEWPDHGVPRDTLAVREILKRI---YNLPPNFGPIVVHCSAGIGRTGAYCTI 279
+ H Y WPDHGVP T ++ + ++ + N P GP VVHCSAG+GRTG + +
Sbjct: 198 RLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIAL 257
Query: 280 HNTVQRILVGDMSALDLANTVKE-------------QYIFCHQAIVDEL 315
+Q++ D ++D+ V + QY++ HQ + D L
Sbjct: 258 DRILQQLDSKD--SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL 304
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 145/284 (51%), Gaps = 30/284 (10%)
Query: 49 KLQNKSREI-SQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQ 107
KLQ S + S+E+ L K + C +AL N KNRY +ILP+D RV L
Sbjct: 18 KLQADSNYLLSKEYEEL-----KDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSN 72
Query: 108 CKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRL 167
D YINAS I ++ + ++I TQGPLP T +DFW+MV + + IVM+T+
Sbjct: 73 VDD--DPCSDYINASYIPGNNFRR--EYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQC 128
Query: 168 VDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLH 227
V+ + VKC Y+ A+ +G++ I+ ++ +R ++ +E + + H
Sbjct: 129 VEKGR-VKCDHYWPADQDSLYYGDL-ILQMLSESVLPEWTIREFKICGEEQLDAHRLIRH 186
Query: 228 IQYPEWPDHGVPRDTLAVREILKRI---YNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQ 284
Y WPDHGVP T ++ + ++ + N P GP VVHCSAG+GRTG + + +Q
Sbjct: 187 FHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQ 246
Query: 285 RILVGDMSALDLANTVKE-------------QYIFCHQAIVDEL 315
++ D ++D+ V + QY++ HQ + D L
Sbjct: 247 QLDSKD--SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL 288
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 128/253 (50%), Gaps = 29/253 (11%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 56 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 113
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 114 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTEN-TEEYGNIIVTLKSTKIHACY 171
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 172 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 231
Query: 257 -PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------E 302
P GP++VHCSAG+GRTG Y I + +Q+I D S +++ +K E
Sbjct: 232 MPETGPVLVHCSAGVGRTGTYIVIDSMLQQI--KDKSTVNVLGFLKHIRTQRNYLVQTEE 289
Query: 303 QYIFCHQAIVDEL 315
QYIF H A+++ +
Sbjct: 290 QYIFIHDALLEAI 302
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 128/253 (50%), Gaps = 29/253 (11%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 67 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 124
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 125 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTENS-EEYGNIIVTLKSTKIHACY 182
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 183 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 242
Query: 257 -PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------E 302
P GP++VHCSAG+GRTG Y I + +Q+I D S +++ +K E
Sbjct: 243 MPETGPVLVHCSAGVGRTGTYIVIDSMLQQI--KDKSTVNVLGFLKHIRTQRNYLVQTEE 300
Query: 303 QYIFCHQAIVDEL 315
QYIF H A+++ +
Sbjct: 301 QYIFIHDALLEAI 313
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 128/253 (50%), Gaps = 29/253 (11%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 56 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 113
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 114 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTENS-EEYGNIIVTLKSTKIHACY 171
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 172 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 231
Query: 257 -PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------E 302
P GP++VHCSAG+GRTG Y I + +Q+I D S +++ +K E
Sbjct: 232 MPETGPVLVHCSAGVGRTGTYIVIDSMLQQI--KDKSTVNVLGFLKHIRTQRNYLVQTEE 289
Query: 303 QYIFCHQAIVDEL 315
QYIF H A+++ +
Sbjct: 290 QYIFIHDALLEAI 302
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 143/289 (49%), Gaps = 39/289 (13%)
Query: 53 KSREISQEFARLQAS----------RIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNR 102
K + F +LQA +K + C +AL N KNRY +ILP+D R
Sbjct: 10 KINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATR 69
Query: 103 VVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIV 162
V L DY INAS I ++ + ++I TQGPLP T +DFW+MV + + IV
Sbjct: 70 VKLSGGSDY-------INASYIPGNNFRR--EYIVTQGPLPGTKDDFWKMVWEQNVHNIV 120
Query: 163 MLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPP 222
M+T+ V+ + VKC Y+ A+ +G++ I+ ++ +R ++ +E +
Sbjct: 121 MVTQCVEKGR-VKCDHYWPADQDSLYYGDL-ILQMLSESVLPEWTIREFKICGEEQLDAH 178
Query: 223 MSVLHIQYPEWPDHGVPRDTLAVREILKRI---YNLPPNFGPIVVHCSAGIGRTGAYCTI 279
+ H Y WPDHGVP T ++ + ++ + N P GP VVHCSAG+GRTG + +
Sbjct: 179 RLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIAL 238
Query: 280 HNTVQRILVGDMSALDLANTVKE-------------QYIFCHQAIVDEL 315
+Q++ D ++D+ V + QY++ HQ + D L
Sbjct: 239 DRILQQLDSKD--SVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVL 285
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 128/253 (50%), Gaps = 29/253 (11%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 49 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 106
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 107 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTENS-EEYGNIIVTLKSTKIHACY 164
Query: 202 TETALVLRNLEVNYKESEEPP-----MSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 165 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 224
Query: 257 -PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------E 302
P GP++VHCSAG+GRTG Y I + +Q+I D S +++ +K E
Sbjct: 225 MPETGPVLVHCSAGVGRTGTYIVIDSMLQQI--KDKSTVNVLGFLKHIRTQRNYLVQTEE 282
Query: 303 QYIFCHQAIVDEL 315
QYIF H A+++ +
Sbjct: 283 QYIFIHDALLEAI 295
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 39/258 (15%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARG--YINASLISTSSSEKVSQF 135
C A N KNR + ++P ++ RV L P +G YINAS I + ++F
Sbjct: 342 CFSAQKECNKEKNRNSSVVPSERARVGLAPL----PGMKGTDYINASYIM--GYYRSNEF 395
Query: 136 IATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-----QAEDGPREFG 190
I TQ PLPHT +DFW M+ ++ +IVML DN + + D F + E E
Sbjct: 396 IITQHPLPHTTKDFWRMIWDHNAQIIVMLP---DNQSLAE--DEFVYWPSREESMNCEAF 450
Query: 191 NIGIVTK--WIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP-RDTLAVRE 247
+ +++K + E +++ + + + ++ + V H Q P+WP+ P T +
Sbjct: 451 TVTLISKDRLCLSNEEQIIIHDFILEATQ-DDYVLEVRHFQCPKWPNPDAPISSTFELIN 509
Query: 248 ILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK------ 301
++K GP +VH G G C + Q++ + +A+D+ K
Sbjct: 510 VIKE--EALTRDGPTIVHDEYGAVSAGMLCALTTLSQQL--ENENAVDVFQVAKMINLMR 565
Query: 302 -------EQYIFCHQAIV 312
EQY F ++A++
Sbjct: 566 PGVFTDIEQYQFIYKAML 583
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 128/253 (50%), Gaps = 29/253 (11%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 57 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 114
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 115 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTENS-EEYGNIIVTLKSTKIHACY 172
Query: 202 TETALVLRNLEVNYKESEEPP-----MSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 173 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 232
Query: 257 -PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------E 302
P GP++VHCSAG+GRTG Y I + +Q+I D S +++ +K E
Sbjct: 233 MPETGPVLVHCSAGVGRTGTYIVIDSMLQQI--KDKSTVNVLGFLKHIRTQRNYLVQTEE 290
Query: 303 QYIFCHQAIVDEL 315
QYIF H A+++ +
Sbjct: 291 QYIFIHDALLEAI 303
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 145/291 (49%), Gaps = 28/291 (9%)
Query: 38 HCSEALSFFKEKLQNKSREISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
H L +K K+ ++ R EF + K P + AR N +KNRY DIL
Sbjct: 11 HADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEAR------KPFNQNKNRYVDIL 64
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D NRV L + A YINAS I + ++IA QGP T +DFW + +
Sbjct: 65 PYDYNRVELSEING--DAGSNYINASYIDGFKEPR--KYIAAQGPRDETVDDFWRXIWEQ 120
Query: 157 HCPVIVMLTRLVDNYKMVKCGDYFQA-EDGPREFGNIGIVTKWIKTTETALVLRNLEVNY 215
VIV +TR + + KC +Y+ + E+G R FG++ + K +++ L +
Sbjct: 121 KATVIVXVTRCEEGNRN-KCAEYWPSXEEGTRAFGDVVVKINQHKRC-PDYIIQKLNIVN 178
Query: 216 KESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNF--GPIVVHCSAGIGRT 273
K+ + V HIQ+ WPDHGVP D + ++ +R+ N NF GPIVVH SAG+GRT
Sbjct: 179 KKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRV-NAFSNFFSGPIVVHSSAGVGRT 237
Query: 274 GAYCTIHNTVQRI-------LVGDMSALD----LANTVKEQYIFCHQAIVD 313
G Y I ++ + + G + L L V+ QYI HQA+V+
Sbjct: 238 GTYIGIDAXLEGLEAENKVDVYGYVVKLRRQRCLXVQVEAQYILIHQALVE 288
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 59/298 (19%)
Query: 57 ISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAAR 116
+ EF RL + R R + N SKNR ++++P+D NRV LK + +
Sbjct: 321 LEAEFQRLPSYR-----SWRTQHIGNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESE 375
Query: 117 -----------------GYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCP 159
YINAS I + +V IA QGPL T DFW+ + Q
Sbjct: 376 HDSDESSDDDSDSEEPSKYINASFIXSYWKPEVX--IAAQGPLKETIGDFWQXIFQRKVK 433
Query: 160 VIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESE 219
VIV LT L + + C Y+ +G + +G+I + K + T LR E+ + + +
Sbjct: 434 VIVXLTELKHGDQEI-CAQYWG--EGKQTYGDIEVDLKDTDKSST-YTLRVFELRHSKRK 489
Query: 220 EPPMSVLHIQYPEWPDHGV---PRDTLAVREILKRIYNLPPNFG----------PIVVHC 266
+ +V QY W + P++ ++ +++K+ LP P+++HC
Sbjct: 490 D-SRTVYQYQYTNWSVEQLPAEPKELISXIQVVKQ--KLPQKNSSEGNKHHKSTPLLIHC 546
Query: 267 SAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------EQYIFCHQAI 311
G +TG +C + N ++ ++ +D+ VK EQY F + I
Sbjct: 547 RDGSQQTGIFCALLNLLESAETEEV--VDIFQVVKALRKARLGXVSTFEQYQFLYDVI 602
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 128/253 (50%), Gaps = 29/253 (11%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 56 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 113
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +I+M+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 114 FEDFWRMIWEQNTGIIIMITNLVEKGRR-KCDQYWPTEN-TEEYGNIIVTLKSTKIHACY 171
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 172 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 231
Query: 257 -PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------E 302
P GP++VHCSAG+GRTG Y I + +Q+I D S +++ +K E
Sbjct: 232 MPETGPVLVHCSAGVGRTGTYIVIDSMLQQI--KDKSTVNVLGFLKHIRTQRNYLVQTEE 289
Query: 303 QYIFCHQAIVDEL 315
QYIF H A+++ +
Sbjct: 290 QYIFIHDALLEAI 302
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 124/221 (56%), Gaps = 12/221 (5%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N+SKNRY DI P+D RV+LK +DY A YIN + S+S ++Q+IA QGPLPHT
Sbjct: 71 NISKNRYRDISPYDATRVILKGNEDYINA--NYINMEIPSSSI---INQYIACQGPLPHT 125
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA 205
DFW+M + ++VMLT V+ + VKC Y+ G +G VT + TA
Sbjct: 126 CTDFWQMTWEQGSSMVVMLTTQVERGR-VKCHQYWPEPTGSSSYGCYQ-VTCHSEEGNTA 183
Query: 206 LVLRNLEV-NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYN-LPPNFGPIV 263
+ R + + N +++E P++ IQY WPDHGVP D+ + + + N P+V
Sbjct: 184 YIFRKMTLFNQEKNESRPLT--QIQYIAWPDHGVPDDSSDFLDFVCHVRNKRAGKEEPVV 241
Query: 264 VHCSAGIGRTGAYCTIHNTVQRILVGD-MSALDLANTVKEQ 303
VHCSAGIGRTG T+ + I + LD+ T+++Q
Sbjct: 242 VHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQ 282
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 144/280 (51%), Gaps = 29/280 (10%)
Query: 48 EKLQ-NKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLK 106
E+L+ N S ++SQE+ I P + L+ N KNRY +++ +D +RV+L+
Sbjct: 24 ERLKANDSLKLSQEY-----ESIDPGQQFTWEHSNLEA-NKPKNRYANVIAYDHSRVILQ 77
Query: 107 QCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTR 166
+ YINA+ + + + +IATQGPLP T+ DFW MV + +VM+TR
Sbjct: 78 PLEGI--MGSDYINANYVD--GYRRQNAYIATQGPLPETFGDFWRMVWEQRSATVVMMTR 133
Query: 167 LVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA-LVLRNLEVNYKESEEPPMSV 225
L + + +KC Y+ G +G I + + T E A +R ++ S E V
Sbjct: 134 LEEKSR-IKCDQYW-PNRGTETYGFIQVTL--LDTMELATFCVRTFSLHKNGSSE-KREV 188
Query: 226 LHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIVVHCSAGIGRTGAYCTIHNTVQ 284
H Q+ WPDHGVP L+R+ PP+ GPIVVHCSAG+GRTG + I ++
Sbjct: 189 RHFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDAGPIVVHCSAGVGRTGCFIVIDAMLE 248
Query: 285 RI-------LVGDMSAL----DLANTVKEQYIFCHQAIVD 313
RI + G ++ + + ++QY F H+A+++
Sbjct: 249 RIKTEKTVDVYGHVTLMRSQRNYMVQTEDQYGFIHEALLE 288
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 133/272 (48%), Gaps = 30/272 (11%)
Query: 60 EFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYI 119
EF RL +S+ + +R T +L N KNR +ILP++ +RV L+ + YI
Sbjct: 324 EFKRLASSK---AHTSRFITASLP-CNKFKNRLVNILPYESSRVCLQPIRGVE--GSDYI 377
Query: 120 NASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDY 179
NAS I +K +IATQGPL T EDFW + + + ++VMLT+L + + KC Y
Sbjct: 378 NASFIDGYRQQKA--YIATQGPLAETTEDFWRALWENNSTIVVMLTKLREMGRE-KCHQY 434
Query: 180 FQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP 239
+ AE R +V + +LR +V + +V Q+ +WP+ G P
Sbjct: 435 WPAERSARY--QYFVVDPMAEYNMPQYILREFKVT-DARDGQSRTVRQFQFTDWPEQGAP 491
Query: 240 RDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDL 296
+ + + +++ F GPI VHCSAG+GRTG + T+ ++R+ +D+
Sbjct: 492 KSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRY--EGVVDI 549
Query: 297 ANTVK-------------EQYIFCHQAIVDEL 315
TVK ++Y FC QA ++ L
Sbjct: 550 FQTVKVLRTQRPAMVQTEDEYQFCFQAALEYL 581
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 137/272 (50%), Gaps = 26/272 (9%)
Query: 46 FKEKLQNKS-RE---ISQEFARLQASRIKPSEMARGCTVALDGV---NLSKNRYTDILPF 98
F E+L+ + RE ++ EF+ +QA + A G + G N+ KNRY D+LP+
Sbjct: 15 FLERLEARGGREGAVLAGEFSDIQAC--SAAWKADGVCSTVAGSRPENVRKNRYKDVLPY 72
Query: 99 DKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHC 158
D+ RV+L ++ YIN + I +IATQGPLPHT DFW +V ++
Sbjct: 73 DQTRVILSLLQE--EGHSDYINGNFIRGVDGSLA--YIATQGPLPHTLLDFWRLVWEFGV 128
Query: 159 PVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKES 218
VI+M R ++N + +C Y+ E P + G I K ++LR L+V +++
Sbjct: 129 KVILMACREIENGRK-RCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRTLKVTFQKE 187
Query: 219 EEPPMSVLHIQYPEWPDHGVPRD---TLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGA 275
SV +QY WPD GVP LA+ E +R+ P P+ VHCSAG GRTG
Sbjct: 188 SR---SVYQLQYMSWPDRGVPSSPDHMLAMVEEARRLQGSGPE--PLCVHCSAGCGRTGV 242
Query: 276 YCTIHNTVQRILVG----DMSALDLANTVKEQ 303
CT+ Q +L D S D+ +++Q
Sbjct: 243 LCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQ 274
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 144/280 (51%), Gaps = 29/280 (10%)
Query: 48 EKLQ-NKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLK 106
E+L+ N S ++SQE+ I P + L+ VN KNRY +++ +D +RV+L+
Sbjct: 22 ERLKANDSLKLSQEY-----ESIDPGQQFTWEHSNLE-VNKPKNRYANVIAYDHSRVILQ 75
Query: 107 QCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTR 166
+ YINA+ + + + +IATQGPLP T+ DFW MV + IVM+TR
Sbjct: 76 PIEGI--MGSDYINANYVD--GYRRQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTR 131
Query: 167 LVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA-LVLRNLEVNYKESEEPPMSV 225
L + + +KC Y+ G +G I + + T E A +R ++ S E V
Sbjct: 132 LEEKSR-IKCDQYW-PNRGTETYGFIQVTL--LDTIELATFCVRTFSLHKNGSSE-KREV 186
Query: 226 LHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIVVHCSAGIGRTGAYCTIHNTVQ 284
Q+ WPDHGVP L+R+ PP+ GPIVVHCSAG+GRTG + I ++
Sbjct: 187 RQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDAGPIVVHCSAGVGRTGCFIVIDAMLE 246
Query: 285 RI-------LVGDMSAL----DLANTVKEQYIFCHQAIVD 313
RI + G ++ + + ++QY F H+A+++
Sbjct: 247 RIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLE 286
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 133/272 (48%), Gaps = 30/272 (11%)
Query: 60 EFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYI 119
EF RL S+ + +R + L N KNR +I+P++ RV L+ + YI
Sbjct: 322 EFKRLANSK---AHTSRFISANLP-CNKFKNRLVNIMPYESTRVCLQPIRGVE--GSDYI 375
Query: 120 NASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDY 179
NAS I +K +IATQGPL T EDFW M+ + + ++VMLT+L + + KC Y
Sbjct: 376 NASFIDGYRQQKA--YIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGRE-KCHQY 432
Query: 180 FQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP 239
+ AE R +V + +LR +V + +V Q+ +WP+ GVP
Sbjct: 433 WPAERSARY--QYFVVDPMAEYNMPQYILREFKVT-DARDGQSRTVRQFQFTDWPEQGVP 489
Query: 240 RDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDL 296
+ + + +++ F GPI VHCSAG+GRTG + T+ ++R+ +D+
Sbjct: 490 KSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRY--EGVVDI 547
Query: 297 ANTVK-------------EQYIFCHQAIVDEL 315
TVK ++Y FC+QA ++ L
Sbjct: 548 FQTVKMLRTQRPAMVQTEDEYQFCYQAALEYL 579
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 126/253 (49%), Gaps = 29/253 (11%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 57 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 114
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW + + + +IV +T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 115 FEDFWRXIWEQNTGIIVXITNLVEKGRR-KCDQYWPTENS-EEYGNIIVTLKSTKIHACY 172
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNL- 255
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 173 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDXGVPEYALPVLTFVRRSSAAR 232
Query: 256 PPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------E 302
P GP++VHCSAG+GRTG Y I + +Q+I D S +++ +K E
Sbjct: 233 XPETGPVLVHCSAGVGRTGTYIVIDSXLQQI--KDKSTVNVLGFLKHIRTQRNYLVQTEE 290
Query: 303 QYIFCHQAIVDEL 315
QYIF H A+++ +
Sbjct: 291 QYIFIHDALLEAI 303
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 108/200 (54%), Gaps = 12/200 (6%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTS--SSEKVSQFIATQGPLP 143
NL KNRY D+LP+D RV+L+ +DY INAS ++ ++ V+++IATQGPLP
Sbjct: 44 NLDKNRYKDVLPYDTTRVLLQGNEDY-------INASYVNMEIPAANLVNKYIATQGPLP 96
Query: 144 HTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTE 203
HT FW++V +IVMLT L + + KC Y+ G I + T
Sbjct: 97 HTCAQFWQVVWDQKLSLIVMLTTLTERGR-TKCHQYWPDPPDVMNHGGFHIQCQSEDCTI 155
Query: 204 TALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIV 263
+ L N + EE +V H+QY WPDHGVP D+ E + + +L + P++
Sbjct: 156 AYVSREMLVTNTQTGEE--HTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSLRVDSEPVL 213
Query: 264 VHCSAGIGRTGAYCTIHNTV 283
VHCSAGIGRTG T+ +
Sbjct: 214 VHCSAGIGRTGVLVTMETAM 233
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 44/292 (15%)
Query: 44 SFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRV 103
++FK++ + + ++E+ L+ I + A A N KNRY ++LP+D +RV
Sbjct: 33 AYFKKQQADSNCGFAEEYEDLKLIGISLPKYA-----AEIAENRGKNRYNNVLPYDISRV 87
Query: 104 VLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVM 163
L + YINA+ + S+K FIATQGPLP+T +DFW MV + + IVM
Sbjct: 88 KLSVQTH---STDDYINANYMPGYHSKK--DFIATQGPLPNTLKDFWRMVWEKNVYAIVM 142
Query: 164 LTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL---VLRNLEV-NYKESE 219
LT+ V+ + KC +Y+ ++ +++G+I + T+E L +R+ V N + SE
Sbjct: 143 LTKCVEQGR-TKCEEYWPSKQA-QDYGDITVAM----TSEVVLPEWTIRDFVVKNMQSSE 196
Query: 220 EPPMSVLHIQYPEWPDHGVPRDT-------LAVREILKRIYNLPPNFGPIVVHCSAGIGR 272
P+ H + WPDHGVP T VR+ +K+I PP PI+VHCSAG+GR
Sbjct: 197 SHPLRQFH--FTSWPDHGVPDTTDLLINFRYLVRDYMKQI---PPE-SPILVHCSAGVGR 250
Query: 273 TGAYCTIHNTVQRI----------LVGDMSA-LDLANTVKEQYIFCHQAIVD 313
TG + I + +I +V D+ L ++QY+F +Q ++D
Sbjct: 251 TGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLD 302
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
VN KNRY +++ +D +RV+L + Y+NA+ I K + +IATQG LP
Sbjct: 51 VNKPKNRYANVIAYDHSRVLLSAIEGI--PGSDYVNANYID--GYRKQNAYIATQGSLPE 106
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T+ DFW M+ + +VM+T+L + + VKC Y+ + G G + + + T E
Sbjct: 107 TFGDFWRMIWEQRSATVVMMTKLEERSR-VKCDQYWPSR-GTETHGLVQVTL--LDTVEL 162
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIV 263
A YK V Q+ WPDHGVP L+R+ PP+ GP+V
Sbjct: 163 ATYCVRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMV 222
Query: 264 VHCSAGIGRTGAYCTIHNTVQRI-------LVGDMSAL----DLANTVKEQYIFCHQAIV 312
VHCSAG+GRTG + I ++RI + G ++ + + ++QYIF H A++
Sbjct: 223 VHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALL 282
Query: 313 D 313
+
Sbjct: 283 E 283
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 20/241 (8%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
VN KNRY +++ +D +RV+L D P + YINA+ I K + +IATQGPLP
Sbjct: 42 VNKPKNRYANVIAYDHSRVILTSI-DGVPGS-DYINANYID--GYRKQNAYIATQGPLPE 97
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T DFW MV + +VM+TRL + + VKC Y+ A G G I + + T E
Sbjct: 98 TMGDFWRMVWEQRTATVVMMTRLEEKSR-VKCDQYWPAR-GTETCGLIQVTL--LDTVEL 153
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP-NFGPIV 263
A +K + Q+ WPDHGVP + L+R+ P + GP+V
Sbjct: 154 ATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMV 213
Query: 264 VHCSAGIGRTGAYCTIHNTVQRI-------LVGDMSAL----DLANTVKEQYIFCHQAIV 312
VHCSAG+GRTG + I ++R+ + G ++ + + ++QY+F H+A++
Sbjct: 214 VHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALL 273
Query: 313 D 313
+
Sbjct: 274 E 274
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 26/246 (10%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNR +I+P++ RV L+ + YINAS + +K +IATQGPL +
Sbjct: 332 NKFKNRLVNIMPYELTRVCLQPIRGVE--GSDYINASFLDGYRQQKA--YIATQGPLAES 387
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA 205
EDFW M+ +++ +IVMLT+L + + KC Y+ AE R +V +
Sbjct: 388 TEDFWRMLWEHNSTIIVMLTKLREMGRE-KCHQYWPAERSARY--QYFVVDPMAEYNMPQ 444
Query: 206 LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNF---GPI 262
+LR +V + ++ Q+ +WP+ GVP+ + + +++ F GPI
Sbjct: 445 YILREFKVT-DARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPI 503
Query: 263 VVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------EQYIFCHQ 309
VHCSAG+GRTG + T+ ++R+ +D+ TVK +QY C++
Sbjct: 504 TVHCSAGVGRTGVFITLSIVLERMRYE--GVVDMFQTVKTLRTQRPAMVQTEDQYQLCYR 561
Query: 310 AIVDEL 315
A ++ L
Sbjct: 562 AALEYL 567
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 144/317 (45%), Gaps = 39/317 (12%)
Query: 21 SAVDFPPRI-SLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCT 79
+A D R+ L Q + + F++E + +E+ RL+ R +
Sbjct: 219 NAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPE--------- 269
Query: 80 VALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLIST---SSSEKVSQFI 136
N KNRY +ILPFD +RV+L Q +D YINA+ I E +I
Sbjct: 270 ------NKGKNRYKNILPFDHSRVIL-QGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 322
Query: 137 ATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVT 196
A+QG L T DFW+M Q + VIVM TR V+ + KC Y+ R +G VT
Sbjct: 323 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRN-KCVPYWPEVGMQRAYGPYS-VT 380
Query: 197 KWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
+ T LR L+V+ ++ + + H QY WPDHGVP + V L +I
Sbjct: 381 NCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQ 440
Query: 257 ---PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSA-LDLANTVK----------- 301
P+ GPI+VHCSAGIGRTG I ++ I + +D+ T++
Sbjct: 441 ESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQ 500
Query: 302 --EQYIFCHQAIVDELE 316
QY F + AI +E
Sbjct: 501 TEAQYKFIYVAIAQFIE 517
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ VKC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK-GSVKCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 214 GSLSPEHGPVVVHCSAGIGRSGTFC 238
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 136/273 (49%), Gaps = 53/273 (19%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
NL KNRY D+ D+ RV L + + YINAS + ++ + +I TQGPL +T
Sbjct: 52 NLEKNRYGDVPCLDQTRVKLTKRSGH--TQTDYINASFMD--GYKQKNAYIGTQGPLENT 107
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPR-EFG-----NIGI--VTK 197
Y DFW MV + VIVM TR + + KCG Y+ E R FG N+G+ +
Sbjct: 108 YRDFWLMVWEQKVLVIVMTTRFEEGGRR-KCGQYWPLEKDSRIRFGFLTVTNLGVENMNH 166
Query: 198 WIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP- 256
+ KTT LE++ E E V H Q+ WPD+GVP ++ + L+ + N
Sbjct: 167 YKKTT--------LEIHNTE-ERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQS 217
Query: 257 ---PNFG----------PIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-- 301
N G PIVVHCSAGIGRTG +C++ + ++ ++ L++ TV
Sbjct: 218 LAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQL--EELGTLNVFQTVSRM 275
Query: 302 -----------EQYIFCHQAIVD--ELEDLISG 321
EQY FC++AI++ E E ++S
Sbjct: 276 RTQRAFSIQTPEQYYFCYKAILEFAEKEGMVSA 308
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 34 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 85
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 86 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 144
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 145 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 203
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 204 GSLSPEHGPVVVHCSAGIGRSGTFC 228
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 38 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 89
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 90 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 148
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 149 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 207
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 208 GSLSPEHGPVVVHCSAGIGRSGTFC 232
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 132/281 (46%), Gaps = 32/281 (11%)
Query: 59 QEFARLQASRIKPSEMARGCTVALDGV---NLSKNRYTDILPFDKNRVVLKQCKDYRPAA 115
+EF LQ +K L+G N KNRY +ILPFD +RV+L Q +D
Sbjct: 26 EEFESLQKQEVK------NLHQRLEGQRPENKGKNRYKNILPFDHSRVIL-QGRDSNIPG 78
Query: 116 RGYINASLIST---SSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYK 172
YINA+ I E +IA+QG L T DFW+M Q + VIVM TR V+ +
Sbjct: 79 SDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGR 138
Query: 173 MVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPE 232
KC Y+ R +G VT + T LR L+V+ ++ + + H QY
Sbjct: 139 N-KCVPYWPEVGMQRAYGPYS-VTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLS 196
Query: 233 WPDHGVPRDTLAVREILKRIYNLP---PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVG 289
WPDHGVP + V L +I P+ GPI+VHCSAGIGRTG I ++ I
Sbjct: 197 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTK 256
Query: 290 DMSA-LDLANTVK-------------EQYIFCHQAIVDELE 316
+ +D+ T++ QY F + AI +E
Sbjct: 257 GLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE 297
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 132/281 (46%), Gaps = 32/281 (11%)
Query: 59 QEFARLQASRIKPSEMARGCTVALDGV---NLSKNRYTDILPFDKNRVVLKQCKDYRPAA 115
+EF LQ +K L+G N KNRY +ILPFD +RV+L Q +D
Sbjct: 4 EEFESLQKQEVK------NLHQRLEGQRPENKGKNRYKNILPFDHSRVIL-QGRDSNIPG 56
Query: 116 RGYINASLIST---SSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYK 172
YINA+ I E +IA+QG L T DFW+M Q + VIVM TR V+ +
Sbjct: 57 SDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGR 116
Query: 173 MVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPE 232
KC Y+ R +G VT + T LR L+V+ ++ + + H QY
Sbjct: 117 N-KCVPYWPEVGMQRAYGPYS-VTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLS 174
Query: 233 WPDHGVPRDTLAVREILKRIYNLP---PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVG 289
WPDHGVP + V L +I P+ GPI+VHCSAGIGRTG I ++ I
Sbjct: 175 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTK 234
Query: 290 DMSA-LDLANTVK-------------EQYIFCHQAIVDELE 316
+ +D+ T++ QY F + AI +E
Sbjct: 235 GLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE 275
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 31 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 82
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 83 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 141
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 142 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 200
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 201 GSLSPEHGPVVVHCSAGIGRSGTFC 225
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 38 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 89
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 90 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 148
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 149 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 207
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 208 GSLSPEHGPVVVHCSAGIGRSGTFC 232
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 214 GSLSPEHGPVVVHCSAGIGRSGTFC 238
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q + YINASLI +++ +I
Sbjct: 66 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDN------DYINASLIKMEEAQR--SYIL 117
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 118 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 176
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 177 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 235
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 236 GSLSPEHGPVVVHCSAGIGRSGTFC 260
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 36 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 87
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 88 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 146
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 147 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 205
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 206 GSLSPEHGPVVVHCSAGIGRSGTFC 230
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY ++ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYVNVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY ++ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYVNVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 214 GSLSPEHGPVVVHCSAGIGRSGTFC 238
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 39 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 90
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 91 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 149
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 150 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 208
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 209 GSLSPEHGPVVVHCSAGIGRSGTFC 233
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 127/257 (49%), Gaps = 36/257 (14%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARG-----YINASLISTSSSEKVSQFIATQG 140
N+ KNR I+P++ NRV++ P RG Y+NAS I + +IA+QG
Sbjct: 9 NMKKNRVLQIIPYEFNRVII-------PVKRGEENTDYVNASFID--GYRQKDSYIASQG 59
Query: 141 PLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIK 200
PL HT EDFW M+ ++ IVMLT L + KC Y+ + DG +G+I + K +
Sbjct: 60 PLLHTIEDFWRMIWEWKSCSIVMLTEL-EERGQEKCAQYWPS-DGLVSYGDITVELKKEE 117
Query: 201 TTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFG 260
E+ V L N +E++ + H + WP+ G+P D + I+ + G
Sbjct: 118 ECESYTVRDLLVTNTRENKSRQIRQFH--FHGWPEVGIPSDGKGMINIIAAVQKQQQQSG 175
Query: 261 --PIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------EQYI 305
PI VHCSAG GRTG +C + ++R+ + LD+ TVK EQY
Sbjct: 176 NHPITVHCSAGAGRTGTFCALSTVLERVKAEGI--LDVFQTVKSLRLQRPHMVQTLEQYE 233
Query: 306 FCHQAIVDELEDLISGF 322
FC++ +V E D S +
Sbjct: 234 FCYK-VVQEYIDAFSDY 249
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 143/317 (45%), Gaps = 39/317 (12%)
Query: 21 SAVDFPPRI-SLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCT 79
+A D R+ L Q + + F++E + +E+ RL+ R +
Sbjct: 219 NAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPE--------- 269
Query: 80 VALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLIST---SSSEKVSQFI 136
N KNRY +ILPFD +RV+L Q +D YINA+ I E +I
Sbjct: 270 ------NKGKNRYKNILPFDHSRVIL-QGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 322
Query: 137 ATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVT 196
A+QG L T DFW+M Q + VIVM TR V+ + KC Y+ R +G VT
Sbjct: 323 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRN-KCVPYWPEVGMQRAYGPYS-VT 380
Query: 197 KWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
+ T LR L+V+ ++ + + H QY WPDHGVP + V L +I
Sbjct: 381 NCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQ 440
Query: 257 ---PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSA-LDLANTVK----------- 301
P+ GPI+VH SAGIGRTG I ++ I + +D+ T++
Sbjct: 441 ESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQ 500
Query: 302 --EQYIFCHQAIVDELE 316
QY F + AI +E
Sbjct: 501 TEAQYKFIYVAIAQFIE 517
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 149/288 (51%), Gaps = 36/288 (12%)
Query: 44 SFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRV 103
++FK++ + + ++E+ L+ I + A A N KNRY ++LP+D +RV
Sbjct: 33 AYFKKQQADSNCGFAEEYEDLKLVGISQPKYA-----AELAENRGKNRYNNVLPYDISRV 87
Query: 104 VLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVM 163
L + YINA+ + S+K FIATQGPLP+T +DFW MV + + I+M
Sbjct: 88 KLSVQTH---STDDYINANYMPGYHSKK--DFIATQGPLPNTLKDFWRMVWEKNVYAIIM 142
Query: 164 LTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL---VLRNLEV-NYKESE 219
LT+ V+ + KC +Y+ ++ +++G+I + T+E L +R+ V N + SE
Sbjct: 143 LTKCVEQGR-TKCEEYWPSKQA-QDYGDITVAM----TSEIVLPEWTIRDFTVKNIQTSE 196
Query: 220 EPPMSVLHIQYPEWPDHGVPRDT---LAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAY 276
P+ H + WPDHGVP T + R +++ P PI+VH SAG+GRTG +
Sbjct: 197 SHPLRQFH--FTSWPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHSSAGVGRTGTF 254
Query: 277 CTIHNTVQRI----------LVGDMSA-LDLANTVKEQYIFCHQAIVD 313
I + +I +V D+ L ++QY+F +Q ++D
Sbjct: 255 IAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLD 302
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 15/197 (7%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N ++NRY D+ PFD +R+ L Q YINASLI +++ +I TQGPLP+T
Sbjct: 40 NKNRNRYCDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYILTQGPLPNT 91
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVTKWI-KTTE 203
FWEMV + +VML R+++ + KC Y+ Q E+ F + + I + +
Sbjct: 92 VGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKLTLISEDIK 150
Query: 204 TALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY---NLPPNFG 260
+ +R LE+ ++E +LH Y WPD GVP + L ++ +L P G
Sbjct: 151 SYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHG 209
Query: 261 PIVVHCSAGIGRTGAYC 277
P+VVHCSAGIGR+G +C
Sbjct: 210 PVVVHCSAGIGRSGTFC 226
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 126/251 (50%), Gaps = 31/251 (12%)
Query: 80 VALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQ 139
VA N +KNRY +I+ +D +RV+L+ +D + YINA+ I ++ S +IATQ
Sbjct: 63 VAKKDQNRAKNRYGNIIAYDHSRVILQPVED--DPSSDYINANYID--GYQRPSHYIATQ 118
Query: 140 GPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWI 199
GP+ T DFW M+ Q IVM+T LV+ + VKC Y+ D +G+ + +
Sbjct: 119 GPVHETVYDFWRMIWQEQSACIVMVTNLVEVGR-VKCYKYW--PDDTEVYGDFKVTCVEM 175
Query: 200 KTTETALVLRNLEV---NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRI-YNL 255
+ V+R + Y E E V + WPDHGVP + ++R+ +
Sbjct: 176 EPL-AEYVVRTFTLERRGYNEIRE----VKQFHFTGWPDHGVPYHATGLLSFIRRVKLSN 230
Query: 256 PPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------E 302
PP+ GPIVVHCSAG GRTG Y I + + +D+ N VK E
Sbjct: 231 PPSAGPIVVHCSAGAGRTGCYIVI--DIMLDMAEREGVVDIYNCVKALRSRRINMVQTEE 288
Query: 303 QYIFCHQAIVD 313
QYIF H AI++
Sbjct: 289 QYIFIHDAILE 299
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHSSAGIGRSGTFC 226
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHSSAGIGRSGTFC 226
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 151/298 (50%), Gaps = 34/298 (11%)
Query: 43 LSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNR 102
L++ ++ L+N+ R +++E+ L A + +P+ C A N+ KNR+ D LP+D R
Sbjct: 18 LAYMEDHLRNRDR-LAKEWQALCAYQAEPNT----CATAQGEGNIKKNRHPDFLPYDHAR 72
Query: 103 VVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIV 162
+ LK + P+ YINAS I ++ +IATQGPL HT DFW+MV + C VIV
Sbjct: 73 IKLK--VESSPSRSDYINASPI-IEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIV 129
Query: 163 MLTRLVDNYKMVKCGDYFQAEDGPREFG--NIGIVTKWIKTTETALVLRNLEVNYKESEE 220
MLT LV++ VK D + ++G + + +V++ I + ++R+ + +++E
Sbjct: 130 MLTPLVED--GVKQCDRYWPDEGASLYHVYEVNLVSEHIWCED--FLVRSFYLKNVQTQE 185
Query: 221 PPMSVLHIQYPEWPDHGVP---RDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYC 277
++ + WP G P R L R + + Y PI+VHCS G GRTG Y
Sbjct: 186 -TRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYR--GRSCPIIVHCSDGAGRTGTYI 242
Query: 278 TIHNTVQRILVGDMSALDLANTV-------------KEQYIFCHQAIVDELEDLISGF 322
I + R+ G + +D+A T+ K+Q+ F A+ +E+ ++
Sbjct: 243 LIDMVLNRMAKG-VKEIDIAATLEHVRDQRPGLVRSKDQFEFALTAVAEEVNAILKAL 299
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 109/203 (53%), Gaps = 18/203 (8%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLI------STSSSEKVSQFIATQ 139
N +KNRY +ILPFD RVVL P + YINA++I ++S+ +IATQ
Sbjct: 273 NKNKNRYKNILPFDHTRVVLHDGDPNEPVS-DYINANIIMPEFETKCNNSKPKKSYIATQ 331
Query: 140 GPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWI 199
G L +T DFW MV Q + VIVM T+ V+ K KC Y+ E +E+G V +
Sbjct: 332 GCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKS-KCVKYWPDEYALKEYG----VMRVR 386
Query: 200 KTTETA---LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
E+A LR L+++ +V + WPDHGVP D V + L+ +++
Sbjct: 387 NVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQ 446
Query: 257 PNF---GPIVVHCSAGIGRTGAY 276
+ GP+VVHCSAGIGRTG +
Sbjct: 447 ESIMDAGPVVVHCSAGIGRTGTF 469
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHASAGIGRSGTFC 226
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 110/212 (51%), Gaps = 20/212 (9%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N ++NRY D+ P+D +RV L+ A YINASL+ +++ +I TQGPLP+T
Sbjct: 42 NRNRNRYRDVSPYDHSRVKLQN------AENDYINASLVDIEEAQR--SYILTQGPLPNT 93
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKW----IKT 201
FW MV Q +VML R+V+ + VKC Y+ +D F G K +K+
Sbjct: 94 CCHFWLMVWQQKTKAVVMLNRIVEK-ESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVKS 152
Query: 202 TETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY---NLPPN 258
T +L+ +N E+ ++ H Y WPD GVP + L ++ +L P+
Sbjct: 153 YYTVHLLQLENINSGETR----TISHFHYTTWPDFGVPESPASFLNFLFKVRESGSLNPD 208
Query: 259 FGPIVVHCSAGIGRTGAYCTIHNTVQRILVGD 290
GP V+HCSAGIGR+G + + + + GD
Sbjct: 209 HGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGD 240
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 131/281 (46%), Gaps = 32/281 (11%)
Query: 59 QEFARLQASRIKPSEMARGCTVALDGV---NLSKNRYTDILPFDKNRVVLKQCKDYRPAA 115
+EF LQ +K L+G N KNRY +ILPFD +RV+L Q +D
Sbjct: 6 EEFESLQKQEVK------NLHQRLEGQRPENKGKNRYKNILPFDHSRVIL-QGRDSNIPG 58
Query: 116 RGYINASLIST---SSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYK 172
YINA+ I E +IA+QG L T DFW+M Q + VIVM TR V+ +
Sbjct: 59 SDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGR 118
Query: 173 MVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPE 232
KC Y+ R +G VT + T LR L+V+ ++ + + H QY
Sbjct: 119 N-KCVPYWPEVGMQRAYGPYS-VTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLS 176
Query: 233 WPDHGVPRDTLAVREILKRIYNLP---PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVG 289
WPDHGVP + V L +I P+ GPI+VH SAGIGRTG I ++ I
Sbjct: 177 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTK 236
Query: 290 DMSA-LDLANTVK-------------EQYIFCHQAIVDELE 316
+ +D+ T++ QY F + AI +E
Sbjct: 237 GLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE 277
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 109/203 (53%), Gaps = 18/203 (8%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLI------STSSSEKVSQFIATQ 139
N +KNRY +ILPFD RVVL P + YINA++I ++S+ +IATQ
Sbjct: 60 NKNKNRYKNILPFDHTRVVLHDGDPNEPVS-DYINANIIMPEFETKCNNSKPKKSYIATQ 118
Query: 140 GPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWI 199
G L +T DFW MV Q + VIVM T+ V+ K KC Y+ E +E+G V +
Sbjct: 119 GCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKS-KCVKYWPDEYALKEYG----VMRVR 173
Query: 200 KTTETA---LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
E+A LR L+++ +V + WPDHGVP D V + L+ +++
Sbjct: 174 NVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQ 233
Query: 257 PNF---GPIVVHCSAGIGRTGAY 276
+ GP+VVHCSAGIGRTG +
Sbjct: 234 ESIMDAGPVVVHCSAGIGRTGTF 256
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHSSAGIGRSGTFC 226
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHSSAGIGRSGTFC 226
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 131/281 (46%), Gaps = 32/281 (11%)
Query: 59 QEFARLQASRIKPSEMARGCTVALDGV---NLSKNRYTDILPFDKNRVVLKQCKDYRPAA 115
+EF LQ +K L+G N KNRY +ILPFD +RV+L Q +D
Sbjct: 4 EEFESLQKQEVK------NLHQRLEGQRPENKGKNRYKNILPFDHSRVIL-QGRDSNIPG 56
Query: 116 RGYINASLIST---SSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYK 172
YINA+ I E +IA+QG L T DFW+M Q + VIVM TR V+ +
Sbjct: 57 SDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGR 116
Query: 173 MVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPE 232
KC Y+ R +G VT + T LR L+V+ ++ + + H QY
Sbjct: 117 N-KCVPYWPEVGMQRAYGPYS-VTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLS 174
Query: 233 WPDHGVPRDTLAVREILKRIYNLP---PNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVG 289
WPDHGVP + V L +I P+ GPI+VH SAGIGRTG I ++ I
Sbjct: 175 WPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTK 234
Query: 290 DMSA-LDLANTVK-------------EQYIFCHQAIVDELE 316
+ +D+ T++ QY F + AI +E
Sbjct: 235 GLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE 275
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 13/204 (6%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 38 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 89
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTK 197
TQGPLP+T FWEMV + +VML R+++ + + Q E+ F + +
Sbjct: 90 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKWAQYWPQKEEKEMIFEDTNLKLT 149
Query: 198 WI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY--- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 150 LISEDIKSYYTVRQLELENLTTQET-REILHFHYTTWPDFGVPESPASFLNFLFKVRESG 208
Query: 254 NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 209 SLSPEHGPVVVHCSAGIGRSGTFC 232
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 149/288 (51%), Gaps = 36/288 (12%)
Query: 44 SFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRV 103
++FK++ + + ++E+ L+ I + A A N KNRY ++LP+D +RV
Sbjct: 33 AYFKKQQADSNCGFAEEYEDLKLVGISQPKYA-----AELAENRGKNRYNNVLPYDISRV 87
Query: 104 VLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVM 163
L + YINA+ + S+K FIATQGPLP+T +DFW MV + + I+M
Sbjct: 88 KLSVQTH---STDDYINANYMPGYHSKK--DFIATQGPLPNTLKDFWRMVWEKNVYAIIM 142
Query: 164 LTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL---VLRNLEV-NYKESE 219
LT+ V+ + KC +Y+ ++ +++G+I + T+E L +R+ V N + SE
Sbjct: 143 LTKCVEQGR-TKCEEYWPSKQA-QDYGDITVAM----TSEIVLPEWTIRDFTVKNIQTSE 196
Query: 220 EPPMSVLHIQYPEWPDHGVPRDT---LAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAY 276
P+ H + PDHGVP T + R +++ P PI+VHCSAG+GRTG +
Sbjct: 197 SHPLRQFH--FTSAPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHCSAGVGRTGTF 254
Query: 277 CTIHNTVQRI----------LVGDMSA-LDLANTVKEQYIFCHQAIVD 313
I + +I +V D+ L ++QY+F +Q ++D
Sbjct: 255 IAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLD 302
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y +PD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQET-REILHFHYTTFPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVHCSAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHCSAGIGRSGTFC 226
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic
Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHXSAGIGRSGTFC 226
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 214 GSLSPEHGPVVVHSSAGIGRSGTFC 238
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 38 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 89
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 90 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 148
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 149 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 207
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 208 GSLSPEHGPVVVHXSAGIGRSGTFC 232
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 109/203 (53%), Gaps = 18/203 (8%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLI------STSSSEKVSQFIATQ 139
N +KNRY +ILPFD RVVL P + YINA++I ++S+ +IATQ
Sbjct: 13 NKNKNRYKNILPFDHTRVVLHDGDPNEPVS-DYINANIIMPEFETKCNNSKPKKSYIATQ 71
Query: 140 GPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWI 199
G L +T DFW MV Q + VIVM T+ V+ K KC Y+ E +E+G V +
Sbjct: 72 GCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKS-KCVKYWPDEYALKEYG----VMRVR 126
Query: 200 KTTETA---LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
E+A LR L+++ +V + WPDHGVP D V + L+ +++
Sbjct: 127 NVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQ 186
Query: 257 PNF---GPIVVHCSAGIGRTGAY 276
+ GP+VVHCSAGIGRTG +
Sbjct: 187 ESIMDAGPVVVHCSAGIGRTGTF 209
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 136/287 (47%), Gaps = 37/287 (12%)
Query: 57 ISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVL--KQCKDYRPA 114
+ +EF +L RI M G A N+ K R I+P+D NRV+L K+ ++Y
Sbjct: 321 LEEEFRKLTNVRIMKENMRTGNLPA----NMKKARVIQIIPYDFNRVILSMKRGQEYT-- 374
Query: 115 ARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMV 174
YINAS I + FIATQGPL HT EDFW M+ ++ IVMLT V +
Sbjct: 375 --DYINASFIDGYRQKDY--FIATQGPLAHTVEDFWRMIWEWKSHTIVMLTE-VQEREQD 429
Query: 175 KCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESE----EPPMSVLHIQY 230
KC Y+ E G G I I K T A+ +R+ V + + E V +
Sbjct: 430 KCYQYWPTE-GSVTHGEITIEIK-NDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHF 487
Query: 231 PEWPDHGVPRDTLAVREILKRIYNLPPNFG--PIVVHCSAGIGRTGAYCTIHNTVQRILV 288
WP+ G+P + + +++ + G PI VHCSAG GRTG + + N ++R+
Sbjct: 488 HGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKA 547
Query: 289 GDMSALDLANTVK-------------EQYIFCHQAIVDELEDLISGF 322
+ LD+ VK EQY FC++ + D + D+ S +
Sbjct: 548 EGL--LDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFI-DIFSDY 591
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 105/196 (53%), Gaps = 8/196 (4%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +ILP D +RV+L Q D P + YINAS I + ++FIA QGP T
Sbjct: 54 NREKNRYPNILPNDHSRVILSQL-DGIPCS-DYINASYIDGYKEK--NKFIAAQGPKQET 109
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGI-VTKWIKTTET 204
DFW MV + IVMLT L + K KC Y+ + G +GNI + V + +
Sbjct: 110 VNDFWRMVWEQKSATIVMLTNLKER-KEEKCHQYW-PDQGCWTYGNIRVCVEDCVVLVDY 167
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP-NFGPIV 263
+ ++ + + P V + + WPD GVP + + + LK++ L P + GPIV
Sbjct: 168 TIRKFCIQPQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIV 227
Query: 264 VHCSAGIGRTGAYCTI 279
VHCSAG+GRTG + I
Sbjct: 228 VHCSAGVGRTGTFIVI 243
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHXSAGIGRSGTFC 226
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q + YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDN------DYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH +AGIGR+G +C
Sbjct: 202 GSLSPEHGPVVVHAAAGIGRSGTFC 226
>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
Phosphatase 1b
Length = 310
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVHCSAGIGRTGAYC 277
+L P GP+VVH SAGIGR+G +C
Sbjct: 214 GSLSPEHGPVVVHDSAGIGRSGTFC 238
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 135/273 (49%), Gaps = 34/273 (12%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILV-G 289
PDH P + ++ + P GPIVVHCSAGIGRTG + Q++ G
Sbjct: 205 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARG 264
Query: 290 DMSALDLANTVK----------EQYIFCHQAIV 312
++ L + ++ EQY F H +
Sbjct: 265 EVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 297
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 135/273 (49%), Gaps = 34/273 (12%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 33 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 85
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 86 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 140
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 141 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 193
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILV-G 289
PDH P + ++ + P GPIVVHCSAGIGRTG + Q++ G
Sbjct: 194 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARG 253
Query: 290 DMSALDLANTVK----------EQYIFCHQAIV 312
++ L + ++ EQY F H +
Sbjct: 254 EVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 286
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 135/273 (49%), Gaps = 34/273 (12%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 43 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 95
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 96 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 150
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 151 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 203
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILV-G 289
PDH P + ++ + P GPIVVHCSAGIGRTG + Q++ G
Sbjct: 204 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARG 263
Query: 290 DMSALDLANTVK----------EQYIFCHQAIV 312
++ L + ++ EQY F H +
Sbjct: 264 EVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 296
>pdb|3D42|A Chain A, Crystal Structure Of Heptp In Complex With A
Monophosphorylated Erk2 Peptide
pdb|3D44|A Chain A, Crystal Structure Of Heptp In Complex With A Dually
Phosphorylated Erk2 Peptide Mimetic
Length = 308
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 135/273 (49%), Gaps = 34/273 (12%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY DILP ++RV L + +
Sbjct: 43 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKDILPNPQSRVCLGRAQSQEDG 95
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 96 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 150
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 151 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 203
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILV-G 289
PDH P + ++ + P GPIVVH SAGIGRTG + Q++ G
Sbjct: 204 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARG 263
Query: 290 DMSALDLANTVK----------EQYIFCHQAIV 312
++ L + ++ EQY F H +
Sbjct: 264 EVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 296
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 34/273 (12%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E V HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---DVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILV-G 289
PDH P + ++ + P GPIVVHCSAGIGRTG + Q++ G
Sbjct: 205 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARG 264
Query: 290 DMSALDLANTVK----------EQYIFCHQAIV 312
++ L + ++ EQY F H +
Sbjct: 265 EVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 297
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 131/277 (47%), Gaps = 47/277 (16%)
Query: 58 SQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARG 117
S+E LQ +KP + C + N KNRY +ILP+D RV L G
Sbjct: 52 SKELENLQ--ELKPLDQ---CLIGQTKENRRKNRYKNILPYDATRVPLGD-------EGG 99
Query: 118 YINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCG 177
YINAS I ++ +IA QGPLP T DFW+M+ + VI M+T+ V+ K +KC
Sbjct: 100 YINASFIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEK-IKCQ 158
Query: 178 DYFQAEDGPREFGNIGIVTKWIKTTET------ALVLRNLEVNYKESEEPPMSVLHIQYP 231
Y+ P G +V+ ++ V+R + + ++ E + H+ +
Sbjct: 159 RYW-----PNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTRE-VRHISHLNFT 212
Query: 232 EWPDHGVPR---DTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILV 288
WPDH P D L ++ I+ GPI+ HCSAGIGR+G I + V ++
Sbjct: 213 AWPDHDTPSQPDDLLTFISYMRHIH----RSGPIITHCSAGIGRSGTLICI-DVVLGLIS 267
Query: 289 GDMSALDLANTVK-------------EQYIFCHQAIV 312
D+ D+++ V+ +QYIFC+Q I+
Sbjct: 268 QDLD-FDISDLVRCMRLQRHGMVQTEDQYIFCYQVIL 303
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N +KNRY +I+ +D +RV L D P + YINA+ I + +IATQGP+ T
Sbjct: 47 NRNKNRYGNIISYDHSRVRLL-VLDGDPHS-DYINANYID--GYHRPRHYIATQGPMQET 102
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA 205
+DFW M+ Q + IVM+T LV+ + VKC Y+ D +G+I + I+T A
Sbjct: 103 VKDFWRMIWQENSASIVMVTNLVEVGR-VKCVRYW--PDDTEVYGDIKVTL--IETEPLA 157
Query: 206 -LVLRNLEVNYKESEE-PPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPI 262
V+R V K E + + H + WPDHGVP + ++++ L PP GPI
Sbjct: 158 EYVIRTFTVQKKGYHEIRELRLFH--FTSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPI 215
Query: 263 VVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------EQYIFCHQ 309
VVHCSAG GRTG + I + + + +D+ N V+ EQY+F H
Sbjct: 216 VVHCSAGAGRTGCFIAIDTMLD--MAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHD 273
Query: 310 AIVD 313
AI++
Sbjct: 274 AILE 277
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 34/273 (12%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILV-G 289
P H P + ++ + P GPIVVHCSAGIGRTG + Q++ G
Sbjct: 205 PAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGIGRTGCFIATRIGCQQLKARG 264
Query: 290 DMSALDLANTVK----------EQYIFCHQAIV 312
++ L + ++ EQY F H +
Sbjct: 265 EVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 297
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 29/281 (10%)
Query: 49 KLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQC 108
++ + ++ +EF L A I+ + C A N KNRY +ILP+D +RV L
Sbjct: 23 RMADDNKLFREEFNALPACPIQAT-----CEAASKEENKEKNRYVNILPYDHSRVHLTPV 77
Query: 109 KDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLV 168
+ + YINAS I+ ++ ++FIA QGP T DFW M+ + + IVM+T L
Sbjct: 78 EGVPDS--DYINASFIN--GYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLK 133
Query: 169 DNYKMVKCGDYFQAEDGPREFGNIGI----VTKWIKTTETALVLRNLEVNYKESEEPPMS 224
+ K KC Y+ + G +GN+ + VT + T ++ +V + +P
Sbjct: 134 ER-KECKCAQYW-PDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ--QVGDVTNRKPQRL 189
Query: 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNF-GPIVVHCSAGIGRTGAYCTI---- 279
+ + WPD GVP + + + LK++ P + G IVVHCSAG+GRTG + I
Sbjct: 190 ITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAML 249
Query: 280 ---HNTVQRILVGDMSALDLAN----TVKEQYIFCHQAIVD 313
H+ + + G +S + QY+F +QA+++
Sbjct: 250 DMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLE 290
>pdb|2HVL|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant
pdb|2QDP|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant Crystallized In Ammonium Acetate
Length = 309
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 34/273 (12%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILV-G 289
PDH P + ++ + P GPIVVH SAGIGRTG + Q++ G
Sbjct: 205 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARG 264
Query: 290 DMSALDLANTVK----------EQYIFCHQAIV 312
++ L + ++ EQY F H +
Sbjct: 265 EVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLA 297
>pdb|2QDM|A Chain A, Crystal Structure Of The Heptp Catalytic Domain
C270sD236AQ314A Mutant
Length = 309
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 133/273 (48%), Gaps = 34/273 (12%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHCSAGIGRTGAYCTIHNTVQRILV-G 289
P H P + ++ + P GPIVVH SAGIGRTG + Q++ G
Sbjct: 205 PAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHSSAGIGRTGCFIATRIGCQQLKARG 264
Query: 290 DMSALDLANTVK----------EQYIFCHQAIV 312
++ L + ++ EQY F H +
Sbjct: 265 EVDILGIVCQLRLDRGGMIATAEQYQFLHHTLA 297
>pdb|2QEP|A Chain A, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
pdb|2QEP|B Chain B, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
Length = 304
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 145/298 (48%), Gaps = 38/298 (12%)
Query: 43 LSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNR 102
LS+ ++ L+NK+R + +E+ L A + +P+ VA N+ KNR +L +D +R
Sbjct: 19 LSYMEDHLKNKNR-LEKEWEALCAYQAEPN----SSFVAQREENVPKNRSLAVLTYDHSR 73
Query: 103 VVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIV 162
V+LK + + YINAS I + +IATQGPLP T DFW+MV + C VIV
Sbjct: 74 VLLKAENSH--SHSDYINASPI-MDHDPRNPAYIATQGPLPATVADFWQMVWESGCVVIV 130
Query: 163 MLTRLVDNYKMVKCGDYFQAE-DGPREFGNIGIVTKWIKTTE---TALVLRNLEVNYKES 218
MLT L +N + +C Y+ E + +V++ I + + L+NL+ N
Sbjct: 131 MLTPLAEN-GVRQCYHYWPDEGSNLYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTNETR- 188
Query: 219 EEPPMSVLHIQYPEWPDHGVP---RDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTGA 275
+V + W D GVP R L R + + Y PI+VHCS G GR+G
Sbjct: 189 -----TVTQFHFLSWYDRGVPSSSRSLLDFRRKVNKCYR--GRSCPIIVHCSDGAGRSGT 241
Query: 276 YCTIHNTVQRILVGDMSALDLANTV-------------KEQYIFCHQAIVDELEDLIS 320
Y I + ++ G +D+A T+ KEQ+ F A+ +E+ +++
Sbjct: 242 YVLIDMVLNKMAKG-AKEIDIAATLEHLRDQRPGMVQTKEQFEFALTAVAEEVNAILA 298
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 125/254 (49%), Gaps = 27/254 (10%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 5 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 64
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 65 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 120
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 121 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 175
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVHCSA 268
V + ++ Y WPDH VP ++ IL+ I+++ + PI +HCSA
Sbjct: 176 VKFNSETR---TIYQFHYKNWPDHDVPS---SIDPILELIWDVRCYQEDDSVPICIHCSA 229
Query: 269 GIGRTGAYCTIHNT 282
G GRTG C I T
Sbjct: 230 GCGRTGVICAIDYT 243
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 125/254 (49%), Gaps = 27/254 (10%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 24 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 83
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 84 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 139
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 140 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 194
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVHCSA 268
V + ++ Y WPDH VP ++ IL+ I+++ + PI +HCSA
Sbjct: 195 VKFNSETR---TIYQFHYKNWPDHDVPS---SIDPILELIWDVRCYQEDDSVPICIHCSA 248
Query: 269 GIGRTGAYCTIHNT 282
G GRTG C I T
Sbjct: 249 GCGRTGVICAIDYT 262
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 125/254 (49%), Gaps = 27/254 (10%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 5 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 64
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 65 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 120
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 121 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 175
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVHCSA 268
V + ++ Y WPDH VP ++ IL+ I+++ + PI +HCSA
Sbjct: 176 VKFNSETR---TIYQFHYKNWPDHDVPS---SIDPILELIWDVRCYQEDDSVPICIHCSA 229
Query: 269 GIGRTGAYCTIHNT 282
G GRTG C I T
Sbjct: 230 GCGRTGVICAIDYT 243
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 134/285 (47%), Gaps = 52/285 (18%)
Query: 57 ISQEFARLQ-ASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAA 115
S+EF L+ R +P CT A N KNR+T+ILP+D +R L+ D
Sbjct: 46 FSEEFEELKHVGRDQP------CTFADLPCNRPKNRFTNILPYDHSRFKLQPVDD--DEG 97
Query: 116 RGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVK 175
YINA+ + +S + +FI TQGPL T +DFW M + + IVMLTR + + K
Sbjct: 98 SDYINANYVPGHNSPR--EFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGRE-K 154
Query: 176 CGDYFQAEDGPREFGNIGI-------VTKWIKTTETALVLRNLEVNYKESEEPPMSVLHI 228
C Y+ + P +G+I + W+ TE L + SE+ + H
Sbjct: 155 CDQYWPNDTVPVFYGDIKVQILNDSHYADWV-MTEFMLC--------RGSEQRILR--HF 203
Query: 229 QYPEWPDHGVPR--DTLA--VREILKRIYNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQ 284
+ WPD GVP TL VR RI PIVVHCSAG+GR+G + T+ +Q
Sbjct: 204 HFTTWPDFGVPNPPQTLVRFVRAFRDRI---GAEQRPIVVHCSAGVGRSGTFITLDRILQ 260
Query: 285 RILVGDMSALDLANTV-------------KEQYIFCHQAIVDELE 316
+I D +D+ V ++QYI HQ ++ LE
Sbjct: 261 QINTSDY--VDIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVLE 303
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 120/248 (48%), Gaps = 35/248 (14%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N ++R +++P+++NRV L K+ GYINAS I +IATQGPLPHT
Sbjct: 71 NAERSRIREVVPYEENRVELIPTKENNT---GYINASHIKVVVGGAEWHYIATQGPLPHT 127
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF---QAEDGPREFGNIGIVTKWIKTT 202
DFW+MV + VI M+T + + K Y+ ++ +G + TK+ +T
Sbjct: 128 CHDFWQMVWEQGVNVIAMVTAEEEGGR-TKSHRYWPKLGSKHSSATYGKFKVTTKF-RTD 185
Query: 203 ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFG-- 260
L+V + S + +V H+QY +WPDHG P D L+ I ++ +
Sbjct: 186 SVCYATTGLKVKHLLSGQ-ERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSM 244
Query: 261 ---------PIVVHCSAGIGRTGA--------YCTIHNTVQRILVGDMSALDLANTVKEQ 303
PIVVHCSAG+GRTG YC HN +++ V M L ++EQ
Sbjct: 245 LEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHN--EKVEVPMMLRL-----LREQ 297
Query: 304 YIFCHQAI 311
+F Q I
Sbjct: 298 RMFMIQTI 305
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 24/238 (10%)
Query: 88 SKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYE 147
+KNRY ILP +RV L+ K+ + YINA+ I S K FIATQGP+ +T
Sbjct: 58 TKNRYKTILPNPLSRVCLRP-KNITDSLSTYINANYIRGYSG-KEKAFIATQGPMINTVN 115
Query: 148 DFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALV 207
DFW+MV Q PVIVM+T+L + K KC Y+ + G +G + ++ + +
Sbjct: 116 DFWQMVWQEDSPVIVMITKLKE--KNEKCVLYWPEKRGI--YGKVEVLVTGVTECDN-YT 170
Query: 208 LRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYN---LPPNFGPIVV 264
+RNL + + V H Y WPDH P + +++ + GP+VV
Sbjct: 171 IRNLVLKQGSHTQ---HVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVV 227
Query: 265 HCSAGIGRTGAYCTIHNTVQRIL-VGDMSALDLANTVK----------EQYIFCHQAI 311
HCSAGIGRTG + Q++ G + AL + ++ EQY F H A+
Sbjct: 228 HCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVHHAL 285
>pdb|3OLR|A Chain A, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|B Chain B, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|C Chain C, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|D Chain D, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OMH|A Chain A, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|B Chain B, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|C Chain C, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|D Chain D, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
Length = 313
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 124/254 (48%), Gaps = 27/254 (10%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 24 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 83
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 84 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 139
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 140 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 194
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVHCSA 268
V + ++ Y WPDH VP ++ IL+ I+++ + PI +H SA
Sbjct: 195 VKFNSETR---TIYQFHYKNWPDHDVPS---SIDPILELIWDVRCYQEDDSVPICIHSSA 248
Query: 269 GIGRTGAYCTIHNT 282
G GRTG C I T
Sbjct: 249 GCGRTGVICAIDYT 262
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 118/238 (49%), Gaps = 24/238 (10%)
Query: 88 SKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYE 147
+KNRY ILP +RV L+ K+ + YINA+ I S K FIATQGP+ +T +
Sbjct: 45 TKNRYKTILPNPLSRVCLRP-KNVTDSLSTYINANYIRGYSG-KEKAFIATQGPMINTVD 102
Query: 148 DFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALV 207
DFW+MV Q PVIVM+T+L + K KC Y+ + G +G + ++ + +
Sbjct: 103 DFWQMVWQEDSPVIVMITKLKE--KNEKCVLYWPEKRGI--YGKVEVLVISVNECDN-YT 157
Query: 208 LRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYN---LPPNFGPIVV 264
+RNL + + V H Y WPDH P + +++ + GP+VV
Sbjct: 158 IRNLVLKQGSHTQ---HVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASQGRGPVVV 214
Query: 265 HCSAGIGRTGAYCTIHNTVQRIL-VGDMSALDLANTVK----------EQYIFCHQAI 311
HCSAGIGRTG + Q++ G + AL + ++ EQY F H A+
Sbjct: 215 HCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVHHAL 272
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 118/243 (48%), Gaps = 27/243 (11%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +I+ +D +RV L+ + YIN + I + + +IATQGP+ T
Sbjct: 45 NRMKNRYGNIIAYDHSRVRLQTIEG--DTNSDYINGNYID--GYHRPNHYIATQGPMQET 100
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA 205
DFW MV + I+M+T LV+ + VKC Y+ D + +I + I+T A
Sbjct: 101 IYDFWRMVWHENTASIIMVTNLVEVGR-VKCCKYWP--DDTEIYKDIKVTL--IETELLA 155
Query: 206 -LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIV 263
V+R V K + + WPDHGVP + ++++ + PP+ GP+V
Sbjct: 156 EYVIRTFAVE-KRGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLV 214
Query: 264 VHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTVK-------------EQYIFCHQA 310
VHCSAG GRTG + I + + +D+ N V+ EQY+F H A
Sbjct: 215 VHCSAGAGRTGCFIVI--DIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDA 272
Query: 311 IVD 313
I++
Sbjct: 273 ILE 275
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 27/254 (10%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 5 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 64
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 65 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 120
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 121 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 175
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVHCSA 268
V + ++ Y WP H VP ++ IL+ I+++ + PI +H SA
Sbjct: 176 VKFNSETR---TIYQFHYKNWPAHDVPS---SIDPILELIWDVRCYQEDDSVPICIHSSA 229
Query: 269 GIGRTGAYCTIHNT 282
G GRTG C I T
Sbjct: 230 GCGRTGVICAIDYT 243
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 126/284 (44%), Gaps = 41/284 (14%)
Query: 40 SEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFD 99
S F K +Q + + +EF+ L E R + A N KNRY DIL
Sbjct: 4 SNCFPFTKLSVQAQYERVQREFSLLLRQ-----EDPRSISFATSLKNRHKNRYLDIL--- 55
Query: 100 KNRVVLKQCKDYRPAARG--YINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYH 157
N L P A YIN +LI K F+A Q P+ DF M+ +
Sbjct: 56 ANEATLYPQVTDAPGASTPYYINGNLIDLDLPHK---FVACQAPVVQGIPDFLAMLYEKK 112
Query: 158 CPVIVMLTRLVDNYKMVKCGDYFQAEDGPREF---GNIGI-----------VTKWIKTTE 203
+++M+T+L + VK Y+ E G GN G+ V +K T
Sbjct: 113 ISLVIMVTKLEEG-GFVKADRYWPEERGSGSIAVSGNCGLTISEDPGKAYEVEDELKITR 171
Query: 204 TALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIV 263
L+L + ++EPP +QY WPDHG+P+ ++ +L + N P P+V
Sbjct: 172 RYLIL-------QRADEPPHKFTQVQYTGWPDHGIPQSATSLEALLTNVKNSPTTV-PVV 223
Query: 264 VHCSAGIGRT----GAYCTIHNTVQRILVGDMSALDLANTVKEQ 303
VHCSAGIGRT GAY + + ++R + D + D+ + ++ Q
Sbjct: 224 VHCSAGIGRTGTLIGAYAALTH-LERGTLTDTTVYDVVSAMRRQ 266
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 14/194 (7%)
Query: 87 LSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTY 146
+ KNRY ILP +RV L P + YINA+ I E+ +IATQGP+ T
Sbjct: 65 VRKNRYKTILPNPHSRVCLTSPDPDDPLS-SYINANYIRGYGGEE-KVYIATQGPIVSTV 122
Query: 147 EDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL 206
DFW MV Q H P+IVM+T + + + KC +Y+ E + I V K I T + L
Sbjct: 123 ADFWRMVWQEHTPIIVMITNIEEMNE--KCTEYWPEEQVAYDGVEI-TVQKVIHTEDYRL 179
Query: 207 VLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDT----LAVREILKRIYNLPPNFGPI 262
L +L+ +E + H + WPD P VRE+ + P+ PI
Sbjct: 180 RLISLKSGTEER-----GLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPI 234
Query: 263 VVHCSAGIGRTGAY 276
+VHCSAGIGRTG +
Sbjct: 235 IVHCSAGIGRTGCF 248
>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
Phosphatase) In Complex With Phosphotyrosine
Length = 305
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 96/194 (49%), Gaps = 14/194 (7%)
Query: 87 LSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTY 146
+ KNRY ILP +RV L P + YINA+ I E+ +IATQGP+ T
Sbjct: 65 VRKNRYKTILPNPHSRVCLTSPDPDDPLS-SYINANYIRGYGGEE-KVYIATQGPIVSTV 122
Query: 147 EDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL 206
DFW MV Q H P+IVM+T + + + KC +Y+ E + I V K I T + L
Sbjct: 123 ADFWRMVWQEHTPIIVMITNIEEMNE--KCTEYWPEEQVAYDGVEI-TVQKVIHTEDYRL 179
Query: 207 VLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDT----LAVREILKRIYNLPPNFGPI 262
L +L+ +E + H + WPD P VRE+ + P+ PI
Sbjct: 180 RLISLKSGTEER-----GLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPI 234
Query: 263 VVHCSAGIGRTGAY 276
+VH SAGIGRTG +
Sbjct: 235 IVHSSAGIGRTGCF 248
>pdb|2BV5|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 At 1.8a Resolution
Length = 282
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 96/194 (49%), Gaps = 14/194 (7%)
Query: 87 LSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTY 146
+ KNRY ILP +RV L P + YINA+ I E+ +IATQGP+ T
Sbjct: 44 VRKNRYKTILPNPHSRVCLTSPDPDDPLS-SYINANYIRGYGGEE-KVYIATQGPIVSTV 101
Query: 147 EDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL 206
DFW MV Q H P+IVM+T + + + KC +Y+ E + I V K I T + L
Sbjct: 102 ADFWRMVWQEHTPIIVMITNIEEMNE--KCTEYWPEEQVAYDGVEI-TVQKVIHTEDYRL 158
Query: 207 VLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDT----LAVREILKRIYNLPPNFGPI 262
L +L+ +E + H + WPD P VRE+ + P+ PI
Sbjct: 159 RLISLKSGTEER-----GLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPI 213
Query: 263 VVHCSAGIGRTGAY 276
+VH SAGIGRTG +
Sbjct: 214 IVHXSAGIGRTGCF 227
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 142/313 (45%), Gaps = 42/313 (13%)
Query: 40 SEALSFFKEKLQNKSR--EISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILP 97
S A SF +L +++ + +EF +LQ E R N KNRY DIL
Sbjct: 2 STAKSFPMAQLSTRAQYSRMQREFVQLQRQ-----ENPRNINFTTSLKNRHKNRYLDILA 56
Query: 98 FDKNRV--VLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQ 155
++ VLK +P YIN +LI F+A Q P+P DF E + +
Sbjct: 57 NEETIYPPVLKAV-GAQPGRYPYINGNLIDLDLPHT---FVACQAPVPQGVPDFLETLSE 112
Query: 156 YHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPR----EFGNIGI-VTKWIKTT-----ETA 205
++VMLT+L + ++K Y+ E+ E G+ I VT+ + + E
Sbjct: 113 KKVDLVVMLTKLREG-GVLKAERYWPEEEEDSLSFPESGHDAIKVTRDAEASYEVDAELD 171
Query: 206 LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVH 265
+V R L ++ +P VL +QY WPDHGVP + E+L I N PI+VH
Sbjct: 172 IVRRPLVIHV--PGKPMHRVLQVQYVGWPDHGVPESAASFDELLSVIKNCVTT-SPILVH 228
Query: 266 CSAGIGRT----GAYCTIHNTVQRILVGDMSALDLANTVK----------EQYIFCHQAI 311
CSAGIGRT GAY + + ++R ++ D + + +K EQY + +
Sbjct: 229 CSAGIGRTGTLIGAYAALLH-IERGILTDSTVYSIVAAMKQKRFGMVQRLEQYAVIYMTV 287
Query: 312 VDELEDLISGFNS 324
+ L ISG S
Sbjct: 288 LGRLGVDISGLVS 300
>pdb|1PA9|A Chain A, Yersinia Protein-Tyrosine Phosphatase Complexed With Pncs
(Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic
Domain, Residues 163-468) Mutant With Cys 235 Replaced
By Arg (C235r)
Length = 284
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 60/234 (25%)
Query: 90 NRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDF 149
NR+ DI QC+ + A R +NA+ I ++ + IA Q PL E
Sbjct: 43 NRFRDI-----------QCR-RQTAVRADLNANYIQVGNT----RTIACQYPLQSQLESH 86
Query: 150 WEMVIQYHCPVIVML--TRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET--- 204
+ M+ + PV+ +L + + N + DYF R+ G G +T K T+
Sbjct: 87 FRMLAENRTPVLAVLASSSEIANQRF-GMPDYF------RQSGTYGSITVESKMTQQVGL 139
Query: 205 --ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPI 262
++ + +E+ + +SV + WPD T E+ K + +L
Sbjct: 140 GDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQ-----TAVSSEVTKALASLVDQTAET 194
Query: 263 ---------------------VVHCSAGIGRT----GAYCTIHNTVQRILVGDM 291
V+HC AG+GRT GA C + ++ V DM
Sbjct: 195 KRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDM 248
>pdb|1YPT|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|1YPT|B Chain B, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|3BLU|A Chain A, Crystal Structure Yoph Complexed With Inhibitor Pvs
pdb|3BLT|A Chain A, Crystal Structures Of Yoph Complexed With Pvsn And Pvs,
Inhibitors Of Yoph Which Co-Valent Bind To Cys Of Active
Site
Length = 305
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 60/234 (25%)
Query: 90 NRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDF 149
NR+ DI QC+ + A R +NA+ I ++ + IA Q PL E
Sbjct: 64 NRFRDI-----------QCR-RQTAVRADLNANYIQVGNT----RTIACQYPLQSQLESH 107
Query: 150 WEMVIQYHCPVIVML--TRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET--- 204
+ M+ + PV+ +L + + N + DYF R+ G G +T K T+
Sbjct: 108 FRMLAENRTPVLAVLASSSEIANQRF-GMPDYF------RQSGTYGSITVESKMTQQVGL 160
Query: 205 --ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPI 262
++ + +E+ + +SV + WPD T E+ K + +L
Sbjct: 161 GDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQ-----TAVSSEVTKALASLVDQTAET 215
Query: 263 ---------------------VVHCSAGIGRT----GAYCTIHNTVQRILVGDM 291
V+HC AG+GRT GA C + ++ V DM
Sbjct: 216 KRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDM 269
>pdb|1XXV|A Chain A, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
pdb|1XXV|B Chain B, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
Length = 306
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 60/234 (25%)
Query: 90 NRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDF 149
NR+ DI QC+ + A R +NA+ I ++ + IA Q PL E
Sbjct: 65 NRFRDI-----------QCR-RQTAVRADLNANYIQVGNT----RTIACQYPLQSQLESH 108
Query: 150 WEMVIQYHCPVIVML--TRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET--- 204
+ M+ + PV+ +L + + N + DYF R+ G G +T K T+
Sbjct: 109 FRMLAENRTPVLAVLASSSEIANQRF-GMPDYF------RQSGTYGSITVESKMTQQVGL 161
Query: 205 --ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPI 262
++ + +E+ + +SV + WPD T E+ K + +L
Sbjct: 162 GDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQ-----TAVSSEVTKALASLVDQTAET 216
Query: 263 ---------------------VVHCSAGIGRT----GAYCTIHNTVQRILVGDM 291
V+HC AG+GRT GA C + ++ V DM
Sbjct: 217 KRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDM 270
>pdb|1QZ0|A Chain A, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|1QZ0|B Chain B, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|2I42|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
Complexed With Vanadate, A Transition State Analogue
pdb|1YTN|A Chain A, Hydrolase
pdb|1YTW|A Chain A, Yersinia Ptpase Complexed With Tungstate
pdb|2Y2F|A Chain A, Crystal Structure Of Yersinia Pestis Yoph In Complex With
An Aminooxy-Containing Platform Compound For Inhibitor
Design
pdb|2YDU|A Chain A, Crystal Structure Of Yoph In Complex With
3-(1,1-Dioxido-3-Oxoisothiazolidin-5-Yl)benzaldeyde
Length = 306
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 60/234 (25%)
Query: 90 NRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDF 149
NR+ DI QC+ + A R +NA+ I ++ + IA Q PL E
Sbjct: 65 NRFRDI-----------QCR-RQTAVRADLNANYIQVGNT----RTIACQYPLQSQLESH 108
Query: 150 WEMVIQYHCPVIVML--TRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET--- 204
+ M+ + PV+ +L + + N + DYF R+ G G +T K T+
Sbjct: 109 FRMLAENRTPVLAVLASSSEIANQRF-GMPDYF------RQSGTYGSITVESKMTQQVGL 161
Query: 205 --ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPI 262
++ + +E+ + +SV + WPD T E+ K + +L
Sbjct: 162 GDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQ-----TAVSSEVTKALASLVDQTAET 216
Query: 263 ---------------------VVHCSAGIGRT----GAYCTIHNTVQRILVGDM 291
V+HC AG+GRT GA C + ++ V DM
Sbjct: 217 KRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDM 270
>pdb|3U96|A Chain A, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
pdb|3U96|B Chain B, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
Length = 306
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 60/234 (25%)
Query: 90 NRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDF 149
NR+ DI QC+ + A R +NA+ I ++ + IA Q PL E
Sbjct: 65 NRFRDI-----------QCR-RQTAVRADLNANYIQVGNT----RTIACQYPLQSQLESH 108
Query: 150 WEMVIQYHCPVIVML--TRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET--- 204
+ M+ + PV+ +L + + N + DYF R+ G G +T K T+
Sbjct: 109 FRMLAENRTPVLAVLASSSEIANQRF-GMPDYF------RQSGTYGSITVESKMTQQVGL 161
Query: 205 --ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPI 262
++ + +E+ + +SV + WPD T E+ K + +L
Sbjct: 162 GDGIMADMYTLTIREAGQKTISVPVVHVGNWPDF-----TAVSSEVTKALASLVDQTAET 216
Query: 263 ---------------------VVHCSAGIGRT----GAYCTIHNTVQRILVGDM 291
V+HC AG+GRT GA C + ++ V DM
Sbjct: 217 KRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDM 270
>pdb|1G4U|S Chain S, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
pdb|1G4W|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp
Length = 383
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 143 PHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTT 202
P E +M+++ C +V+LT D + + YF+ G FG + ++ + +
Sbjct: 194 PDALEAHMKMLLEKECSCLVVLTS-EDQMQAKQLPPYFR---GSYTFGEVHTNSQKVSSA 249
Query: 203 ET--ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFG 260
A+ N++++ E + VLH++ WPDH T + + R+ N N
Sbjct: 250 SQGEAIDQYNMQLSCGEKRYT-IPVLHVK--NWPDHQPLPSTDQLEYLADRVKNSNQNGA 306
Query: 261 P---------IVVHCSAGIGRTGAYC 277
P ++HC G+GRTG
Sbjct: 307 PGRSSSDKHLPMIHCLGGVGRTGTMA 332
>pdb|3BM8|A Chain A, Crystal Structure Of Yoph Mutant D356a Complexed With
Irreversible Inhibitor Pvsn
Length = 305
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 60/234 (25%)
Query: 90 NRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDF 149
NR+ DI QC+ + A R +NA+ I ++ + IA Q PL E
Sbjct: 64 NRFRDI-----------QCR-RQTAVRADLNANYIQVGNT----RTIACQYPLQSQLESH 107
Query: 150 WEMVIQYHCPVIVML--TRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET--- 204
+ M+ + PV+ +L + + N + DYF R+ G G +T K T+
Sbjct: 108 FRMLAENRTPVLAVLASSSEIANQRF-GMPDYF------RQSGTYGSITVESKMTQQVGL 160
Query: 205 --ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPI 262
++ + +E+ + +SV + WP T E+ K + +L
Sbjct: 161 GDGIMADMYTLTIREAGQKTISVPVVHVGNWPAQ-----TAVSSEVTKALASLVDQTAET 215
Query: 263 ---------------------VVHCSAGIGRT----GAYCTIHNTVQRILVGDM 291
V+HC AG+GRT GA C + ++ V DM
Sbjct: 216 KRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDM 269
>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Tungstate
pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Divanadate
Length = 306
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 60/234 (25%)
Query: 90 NRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDF 149
NR+ DI QC+ + A R +NA+ I ++ + IA Q PL E
Sbjct: 65 NRFRDI-----------QCR-RQTAVRADLNANYIQVGNT----RTIACQYPLQSQLESH 108
Query: 150 WEMVIQYHCPVIVML--TRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET--- 204
+ M+ + PV+ +L + + N + DYF R+ G G +T K T+
Sbjct: 109 FRMLAENRTPVLAVLASSSEIANQRF-GMPDYF------RQSGTYGSITVESKMTQQVGL 161
Query: 205 --ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPI 262
++ + +E+ + +SV + +PD T E+ K + +L
Sbjct: 162 GDGIMADMYTLTIREAGQKTISVPVVHVGNFPDQ-----TAVSSEVTKALASLVDQTAET 216
Query: 263 ---------------------VVHCSAGIGRT----GAYCTIHNTVQRILVGDM 291
V+HC AG+GRT GA C + ++ V DM
Sbjct: 217 KRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDM 270
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 233 WPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCSAGIGRTG 274
+ D P D + V+E L N G I VHC AG+GRTG
Sbjct: 247 FADGSTPTDAI-VKEFLDICENAE---GAIAVHCKAGLGRTG 284
>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
pdb|2HJ3|B Chain B, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
Length = 125
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 223 MSVLHIQYPEWPDHGVPRDTLAVREILKRIY---NLPPNFGPIVVHCSAGIGRTGAY--- 276
+ L QYPE P +D + IL R+Y +F I+ A G +
Sbjct: 21 LHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQW 80
Query: 277 -CTIHNTVQRIL 287
C +HNTV R L
Sbjct: 81 LCHVHNTVNRSL 92
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 261 PIVVHCSAGIGRTGA 275
P++VHC+AG+ R+GA
Sbjct: 127 PVLVHCAAGVNRSGA 141
>pdb|2ESB|A Chain A, Crystal Structure Of Human Dusp18
Length = 188
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 228 IQYPEWPDHGVPRDTLA--VREILKRIYNLPPNFGPIVVHCSAGIGRTGAYC 277
IQY + P P L I I+++ G ++HC+AG+ R+ A C
Sbjct: 64 IQYMQVPVADSPNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALC 115
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 52 NKSREISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKD 110
N+S E ++E A L A R P E+ C V L+ + + F K+ V+ +
Sbjct: 31 NRSPEKAEELAALGAERAATPXEVVESCPVTF--AMLADPAAAEEVCFGKHGVL-----E 83
Query: 111 YRPAARGYINASLISTSSSEKVSQFIATQG 140
RGY++ S + ++S+++ + +G
Sbjct: 84 GIGEGRGYVDMSTVDPATSQRIGVAVVAKG 113
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 195 VTKWIKTT--ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP 239
+ KW T +TA V R+ ++ YK+ +E ++ H E+PD P
Sbjct: 7 IEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSP 53
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 195 VTKWIKTT--ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP 239
+ KW T +TA V R+ ++ YK+ +E ++ H E+PD P
Sbjct: 7 IEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSP 53
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 253 YNLPPNFGPIVVHCSAGIGRTGAYCTIHNTVQRILVGDMSALDLANTV 300
Y++ P FG IVV A G Y + + G + LDL V
Sbjct: 257 YHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAV 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,593,151
Number of Sequences: 62578
Number of extensions: 372762
Number of successful extensions: 1393
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 126
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)