Query 020166
Match_columns 330
No_of_seqs 153 out of 452
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 99.9 3.6E-22 1.2E-26 187.7 15.0 157 142-302 105-297 (301)
2 2kr6_A Presenilin-1; protease, 96.4 0.0028 9.5E-08 55.7 4.8 66 219-292 86-154 (176)
3 3aq2_A 6B protein; miRNA machi 15.7 44 0.0015 29.5 0.9 20 297-316 151-174 (207)
4 1pp9_G Ubiquinol-cytochrome C 14.8 1.5E+02 0.0052 22.4 3.6 36 270-305 35-70 (81)
5 3dh4_A Sodium/glucose cotransp 13.7 3.9E+02 0.013 26.2 7.4 60 227-291 403-462 (530)
6 3bbo_G Ribosomal protein L4; l 13.7 39 0.0013 31.8 0.0 11 305-315 262-272 (293)
7 3pp4_P B-lymphocyte antigen CD 12.0 49 0.0017 19.9 0.1 6 1-6 2-7 (25)
8 3tgu_G UQCRQ, mitochondrial ub 12.0 1.5E+02 0.0052 22.4 2.9 48 269-316 34-81 (81)
9 3h4p_A Proteasome subunit alph 10.8 65 0.0022 29.1 0.5 25 306-330 239-263 (264)
10 3qnq_A PTS system, cellobiose- 10.5 1.1E+02 0.0039 29.9 2.2 83 248-330 345-442 (442)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.88 E-value=3.6e-22 Score=187.71 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=121.7
Q ss_pred HHhhhhHHHHHHHhhccchhhhhhHHHHHHHHHhhhhccc--CchhHHHHHHHHHHHHHhhhhhccceE-----------
Q 020166 142 IIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSL--GSFKTGAILLAGLFVYDIFWVFFTPVM----------- 208 (330)
Q Consensus 142 l~~~~~~~~~~~~~~~~~~W~l~nilgi~~~~~~i~~l~l--~sfk~~~ilL~~lf~YDIf~VF~Tpvm----------- 208 (330)
..+.+.+.+++.+++..++|+.+|+.|+++|.++.....+ ..+ .+.+||+++.+||.+|||+|+.|
T Consensus 105 ~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAegvmdlk 183 (301)
T 4hyg_A 105 AGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEGVLETK 183 (301)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHhhhccC
Confidence 4555667777788888999999999999999988766654 777 99999999999999999999765
Q ss_pred ----EEecCC--------------CCCCCcccccCCCcchhhHHHHHHHhhhhccC----CCcchhHHHHHHHHHHHHHH
Q 020166 209 ----LLFPTR--------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRG----KGSRYFKSAFLGYTVGLVLT 266 (330)
Q Consensus 209 ----l~~P~~--------------~~~~~~s~LGlGDIviPGl~ia~~lRfD~~~~----~~~~YF~~s~igY~~GL~~t 266 (330)
+++|+. ..+++..++|+||+|+|+++++-+.|||..+. -+-+ +..+++||.+|+.++
T Consensus 184 ~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~Gt~~Gl~vL 262 (301)
T 4hyg_A 184 APIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMVGSLVGLAVL 262 (301)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHHHHHHHHHHH
Confidence 788872 22467889999999999999999999997543 1234 899999999999999
Q ss_pred HH-HHhhhCCCccchhhhhhHHHHHHHHHHHHhhHHH
Q 020166 267 II-VMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVK 302 (330)
Q Consensus 267 ~~-~~~~~~~~QPALLYLVP~~l~~~~~~A~~rgEl~ 302 (330)
+. ++ .+++||.|.||.++++++.++.++.+||+.
T Consensus 263 l~~V~--~grpqaGLP~LN~GaI~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 263 LYFVN--KGNPQAGLPPLNGGAILGFLVGAALAGSFS 297 (301)
T ss_dssp HHHHT--SSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHH--cCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence 76 44 799999999999999999999999999986
No 2
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=96.44 E-value=0.0028 Score=55.69 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=53.4
Q ss_pred CcccccCCCcchhhHHHHHHH--h-hhhccCCCcchhHHHHHHHHHHHHHHHHHHhhhCCCccchhhhhhHHHHHHH
Q 020166 219 PFSMLGLGDIVIPGIFVALAL--R-FDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLA 292 (330)
Q Consensus 219 ~~s~LGlGDIviPGl~ia~~l--R-fD~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLVP~~l~~~~ 292 (330)
.---|||||-|+=+++++-+- + .|. .=..+|++|..+||++|+..+.+++++-|||- +|..++.+.
T Consensus 86 ~gikLGLGDFIFYSvLVgkAa~~~~~d~------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALP--iSI~lG~~f 154 (176)
T 2kr6_A 86 RGVKLGLGDFIFYSVLVGKASATASGDW------NTTIACFVAILIGLCLTLLLLAIFKKALPALP--ISITFGLVF 154 (176)
T ss_dssp SCCSSCTTTHHHHHHHHHHHHHHSCCTT------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSS--SCCCCHHHH
T ss_pred ccccccccCeeehHHHHHHHHHhhccCH------HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc--HHHHHHHHH
Confidence 334699999999999999886 4 244 34688999999999999999999999999995 555555443
No 3
>3aq2_A 6B protein; miRNA machineries, toxin, ADP-ribosylation fold; 1.65A {Agrobacterium vitis} PDB: 3aq3_A
Probab=15.67 E-value=44 Score=29.55 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=11.7
Q ss_pred HhhHHHHhh----ccccccccccc
Q 020166 297 WNGEVKQLL----EFDESKTAAVV 316 (330)
Q Consensus 297 ~rgEl~~~w----~~~~~~~~~~~ 316 (330)
.+||=+.+| ||.|+.|++++
T Consensus 151 i~gesy~fyaR~gny~ee~e~~~~ 174 (207)
T 3aq2_A 151 IRGQGYGWYARQGNYVEEGEDNEG 174 (207)
T ss_dssp ETTEEEEEEEESTTCCCCCC----
T ss_pred ecCcccceeeccCccccccccCcc
Confidence 467777888 67777776553
No 4
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=14.79 E-value=1.5e+02 Score=22.40 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=27.5
Q ss_pred HhhhCCCccchhhhhhHHHHHHHHHHHHhhHHHHhh
Q 020166 270 MNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLL 305 (330)
Q Consensus 270 ~~~~~~~QPALLYLVP~~l~~~~~~A~~rgEl~~~w 305 (330)
-.++++-+=..+|++|..+++-.+..|.+.|...+=
T Consensus 35 ~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~ 70 (81)
T 1pp9_G 35 PNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHh
Confidence 344455555677999999999999999988877653
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=13.74 E-value=3.9e+02 Score=26.21 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=31.2
Q ss_pred CcchhhHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhhhCCCccchhhhhhHHHHHH
Q 020166 227 DIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFL 291 (330)
Q Consensus 227 DIviPGl~ia~~lRfD~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLVP~~l~~~ 291 (330)
.+.-|+++..+.+..=. ++.+ =..++.|-+.|+++++...... ..-|-+-..+|..+.+.
T Consensus 403 g~~~~~~~~~~llgl~w-kr~~---~~gA~~g~i~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 462 (530)
T 3dh4_A 403 GLVSPGILAVFLLGLFW-KKTT---SKGAIIGVVASIPFALFLKFMP-LSMPFMDQMLYTLLFTM 462 (530)
T ss_dssp TTTHHHHHHHHHHHHHC-TTCC---HHHHHHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHHHHHH
Confidence 34568877666655422 2211 2367777778877777654322 23344434455444433
No 6
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=13.70 E-value=39 Score=31.76 Aligned_cols=11 Identities=0% Similarity=0.063 Sum_probs=0.0
Q ss_pred hcccccccccc
Q 020166 305 LEFDESKTAAV 315 (330)
Q Consensus 305 w~~~~~~~~~~ 315 (330)
|.++|++|+||
T Consensus 262 ~~~~~~~~~~~ 272 (293)
T 3bbo_G 262 DTLEDEDEEEE 272 (293)
T ss_dssp -----------
T ss_pred ccccccccchh
Confidence 34444333333
No 7
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=12.04 E-value=49 Score=19.92 Aligned_cols=6 Identities=50% Similarity=1.021 Sum_probs=2.9
Q ss_pred Ccchhh
Q 020166 1 MKNCER 6 (330)
Q Consensus 1 ~~~~~~ 6 (330)
||||||
T Consensus 2 IynCE~ 7 (25)
T 3pp4_P 2 IYNCEP 7 (26)
T ss_dssp CCCCSC
T ss_pred cccccc
Confidence 345554
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=12.02 E-value=1.5e+02 Score=22.43 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHhhhCCCccchhhhhhHHHHHHHHHHHHhhHHHHhhccccccccccc
Q 020166 269 VMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAAVV 316 (330)
Q Consensus 269 ~~~~~~~~QPALLYLVP~~l~~~~~~A~~rgEl~~~w~~~~~~~~~~~ 316 (330)
+-..+++-+=..+|.+|..++.-.+..|.+.+-..+=.=.-++-|.|+
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnpady~nd~ 81 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPADYENDQ 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGSSTTC
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCHHHhccCC
No 9
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=10.82 E-value=65 Score=29.12 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred ccccccccccccccccccccccccC
Q 020166 306 EFDESKTAAVVSQESGDAKTSKKVE 330 (330)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (330)
+..+..|+++++||+.+.++..|.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (264)
T 3h4p_A 239 KVKKKLNEENKKEEENREETKEKQE 263 (264)
T ss_dssp TTTTSSSCC----------------
T ss_pred HHHHhhhcchhhhhhhhhhhhhhcc
No 10
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=10.53 E-value=1.1e+02 Score=29.93 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhhCCCccc---hhhhhhHHHHHHHHHHH-HhhHHHHhhcccccc----------cc
Q 020166 248 GSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPA---LLYIVPAVIGFLAAHCI-WNGEVKQLLEFDESK----------TA 313 (330)
Q Consensus 248 ~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPA---LLYLVP~~l~~~~~~A~-~rgEl~~~w~~~~~~----------~~ 313 (330)
+..|+..-+.+-.++.+++.+++..-=.+.|. .-.-.|..+.+.+.+.- .|+-+-++-..--+. |+
T Consensus 345 Np~~~iPfi~~~~~~~~~~~~~~~~g~~~~~~~~~vpw~tP~~i~~~l~t~g~~~~~il~~~~~~i~~~iy~PF~k~~dk 424 (442)
T 3qnq_A 345 NPLLLIPFIVVPVVLTIVSYFAMEWGLVARPSGAAVTWTTPILFSGYLGSGGKISGVILQLVNFALAFVIYLPFLKIWDK 424 (442)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHHHHTTSSCCCCCCCCCTTSCHHHHHHHTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcccCcccccccCCCCccHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccc-ccccccccccC
Q 020166 314 AVVSQE-SGDAKTSKKVE 330 (330)
Q Consensus 314 ~~~~~~-~~~~~~~~~~~ 330 (330)
++.+|| +.+++|.+|.|
T Consensus 425 ~~~~~E~~~~~~~~~~~~ 442 (442)
T 3qnq_A 425 QKIAEEKGEAAAENLYFQ 442 (442)
T ss_dssp HHHHHHHTCC--------
T ss_pred HHHHHHHHHHHhhhhccC
Done!