Query 020166
Match_columns 330
No_of_seqs 153 out of 452
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 12:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020166.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020166hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 26.1 35 0.0025 28.6 4.9 8 276-283 181-188 (447)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 9.7 66 0.0048 18.2 1.6 12 190-201 12-23 (30)
3 d1bvyf_ c.23.5.1 (F:) FMN-bind 8.7 39 0.0028 25.8 0.3 29 216-244 82-110 (152)
4 d1q90g_ f.23.26.1 (G:) PetG su 7.1 1.5E+02 0.011 16.9 2.3 15 283-297 13-27 (30)
5 d1vl6a2 c.58.1.3 (A:1-154) Mal 6.9 68 0.005 25.4 1.0 12 218-229 65-76 (154)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 6.7 1.4E+02 0.0099 17.6 2.1 15 186-200 13-27 (34)
7 d1kqfc_ f.21.1.1 (C:) Formate 6.5 95 0.0069 24.4 1.8 18 296-313 174-191 (216)
8 d1ja1a2 c.23.5.2 (A:63-239) NA 6.4 40 0.0029 26.7 -0.7 28 216-244 102-129 (177)
9 d1ppjg_ f.23.13.1 (G:) Ubiquin 4.9 2.7E+02 0.02 18.9 3.3 26 278-303 43-68 (75)
10 d1ykga1 c.23.5.2 (A:63-208) Su 4.4 73 0.0053 24.1 -0.3 11 217-227 82-92 (146)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.07 E-value=35 Score=28.60 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=3.6
Q ss_pred Cccchhhh
Q 020166 276 AQPALLYI 283 (330)
Q Consensus 276 ~QPALLYL 283 (330)
++....++
T Consensus 181 ~w~~~~~~ 188 (447)
T d1pw4a_ 181 DWHAALYM 188 (447)
T ss_dssp CSTTCTHH
T ss_pred cccccchh
Confidence 44444444
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.75 E-value=66 Score=18.22 Aligned_cols=12 Identities=33% Similarity=0.874 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhh
Q 020166 190 LLAGLFVYDIFW 201 (330)
Q Consensus 190 lL~~lf~YDIf~ 201 (330)
.++++|++.|||
T Consensus 12 c~i~lfffaiff 23 (30)
T d2axtt1 12 CIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 467888888886
No 3
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=8.68 E-value=39 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.0
Q ss_pred CCCCcccccCCCcchhhHHHHHHHhhhhc
Q 020166 216 TARPFSMLGLGDIVIPGIFVALALRFDVS 244 (330)
Q Consensus 216 ~~~~~s~LGlGDIviPGl~ia~~lRfD~~ 244 (330)
...+|+++|+||---|=-|......+|..
T Consensus 82 ~~~~~aV~GlGds~Y~~~fc~~~~~ld~~ 110 (152)
T d1bvyf_ 82 KGVRYSVFGCGDKNWATTYQKVPAFIDET 110 (152)
T ss_dssp TTCCEEEEEEECTTSGGGTTHHHHHHHHH
T ss_pred cCceeeeeeccccchhhhhhhHHHHHHHH
Confidence 45789999999998887777788888864
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.11 E-value=1.5e+02 Score=16.88 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHH
Q 020166 283 IVPAVIGFLAAHCIW 297 (330)
Q Consensus 283 LVP~~l~~~~~~A~~ 297 (330)
++|.++...+.+|+.
T Consensus 13 lipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 13 LVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 578888888888874
No 5
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=6.86 E-value=68 Score=25.35 Aligned_cols=12 Identities=42% Similarity=0.614 Sum_probs=9.6
Q ss_pred CCcccccCCCcc
Q 020166 218 RPFSMLGLGDIV 229 (330)
Q Consensus 218 ~~~s~LGlGDIv 229 (330)
.+-+.||||||=
T Consensus 65 dGtaVLGLGniG 76 (154)
T d1vl6a2 65 DGSAVLGLGNIG 76 (154)
T ss_dssp CSTTBTTTBSCC
T ss_pred CCceeecCCCcc
Confidence 356899999993
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.73 E-value=1.4e+02 Score=17.60 Aligned_cols=15 Identities=40% Similarity=0.992 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhh
Q 020166 186 TGAILLAGLFVYDIF 200 (330)
Q Consensus 186 ~~~ilL~~lf~YDIf 200 (330)
++.+-+.|+|+|--+
T Consensus 13 ~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 13 MGVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hhhHhheeeeeeeee
Confidence 456778899998754
No 7
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=6.46 E-value=95 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=13.8
Q ss_pred HHhhHHHHhhcccccccc
Q 020166 296 IWNGEVKQLLEFDESKTA 313 (330)
Q Consensus 296 ~~rgEl~~~w~~~~~~~~ 313 (330)
..+|.++.|.++..+.|+
T Consensus 174 ~~~~~l~~M~tG~v~~~~ 191 (216)
T d1kqfc_ 174 WVKGSIKGMIEGKVSRRW 191 (216)
T ss_dssp HBTTHHHHHHTCEEEHHH
T ss_pred ccccccchhheeeccHHH
Confidence 357899999998766654
No 8
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.38 E-value=40 Score=26.68 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred CCCCcccccCCCcchhhHHHHHHHhhhhc
Q 020166 216 TARPFSMLGLGDIVIPGIFVALALRFDVS 244 (330)
Q Consensus 216 ~~~~~s~LGlGDIviPGl~ia~~lRfD~~ 244 (330)
...+|+++|+||---| -|.+...++|..
T Consensus 102 ~~~~yaVfGlGds~Y~-~Fc~a~~~l~~~ 129 (177)
T d1ja1a2 102 TGVKFAVFGLGNKTYE-HFNAMGKYVDQR 129 (177)
T ss_dssp TTCEEEEEEEECSSSS-STTHHHHHHHHH
T ss_pred cCceEEEEecCCccHH-HHHHHHHHHHHH
Confidence 3568999999998777 567777777654
No 9
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.95 E-value=2.7e+02 Score=18.94 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=20.3
Q ss_pred cchhhhhhHHHHHHHHHHHHhhHHHH
Q 020166 278 PALLYIVPAVIGFLAAHCIWNGEVKQ 303 (330)
Q Consensus 278 PALLYLVP~~l~~~~~~A~~rgEl~~ 303 (330)
--.+|++|..++.-++..|...|..+
T Consensus 43 ~~~l~v~PPfi~~Y~iy~W~~~~~~~ 68 (75)
T d1ppjg_ 43 ACILRVAPPFVAFYLVYTWGTQEFEK 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhceEEcCHHHHHHHHHHHHHHHHHH
Confidence 34688999999999888887766554
No 10
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.43 E-value=73 Score=24.15 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=0.0
Q ss_pred CCCcccccCCC
Q 020166 217 ARPFSMLGLGD 227 (330)
Q Consensus 217 ~~~~s~LGlGD 227 (330)
..+|+++|+||
T Consensus 82 ~~~~aVfGlGd 92 (146)
T d1ykga1 82 NTAFAVFSLGD 92 (146)
T ss_dssp TCEEEEEEECC
T ss_pred CCeEEEEcCcc
Done!