BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020167
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 131
WT +E + F + L F R W KI IGS+TV+Q++S+A++YF K G
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 82 WTEQEHDKFLEAL------QLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 131
WT +E K + L ++ R W+KI +G++T Q+ S QKYF+K+ K G
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66
>pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|B Chain B, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|B Chain B, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 235
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 70 RKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 118
R P I K WT +E ++A++ + RD++ I IG+K+V+Q+++
Sbjct: 124 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 172
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 70 RKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 118
R P I K WT +E ++A++ + RD++ I IG+K+V+Q+++
Sbjct: 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 419
>pdb|2V1D|B Chain B, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 178
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 70 RKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 118
R P I K WT +E ++A++ + RD++ I IG+K+V+Q+++
Sbjct: 67 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 115
>pdb|2X0L|B Chain B, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 133
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 70 RKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 118
R P I K WT +E ++A++ + RD++ I IG+K+V+Q+++
Sbjct: 64 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 112
>pdb|2LTP|A Chain A, Solution Structure Of The Sant2 Domain Of The Human
Nuclear Receptor Corepressor 2 (Ncor2), Northeast
Structural Genomics Consortium (Nesg) Target Id Hr4636e
Length = 89
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 123
+ WTE+E + L R+W I +GSKTV Q ++ Y
Sbjct: 17 QGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60
>pdb|3HPE|A Chain A, Crystal Structure Of Ycei (Hp1286) From Helicobacter
Pylori
pdb|3HPE|B Chain B, Crystal Structure Of Ycei (Hp1286) From Helicobacter
Pylori
Length = 164
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 71 KPYTITKSRES-WTEQEHDKFLEALQLFDRDWKKIEA 106
KPYTI K+ S W E +H KF E +FD KI+A
Sbjct: 1 KPYTIDKANSSVWFEVKHFKFNETRGVFDSFDGKIDA 37
>pdb|2NN5|A Chain A, Structure Of Conserved Protein Of Unknown Function Ef2215
From Enterococcus Faecalis
Length = 184
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 231 YSSSNDSTLRTWPVGETIDRGDHGKPRRVMPDFAQVYSF--------LGSVFDPNSTGHI 282
Y + D + +P E + G +G R ++PDF + F LG +D TG I
Sbjct: 54 YLTETDKLKQWFPELEIGELGVNGFWRFILPDFEETXPFTDYAEEKYLGVTWD---TGII 110
Query: 283 Q-RLKQMDPINFETVLLLMRNLAINLTSPEFEDHVSTCLFSALCKSCV 329
LK+ P +T+L+ +L N T+P +D + K V
Sbjct: 111 YFDLKEQAP--HQTLLVFSESLPENFTTPRHKDIAGWSIVLNRLKQVV 156
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 62/182 (34%), Gaps = 55/182 (30%)
Query: 161 SQFGGQVQSSAALLEPGYIYRPDSSSVLGNPVPVAALSSWSYDSVPPVNVSQVTKDDVGL 220
S+FG + +S L I P S L +P A W S P + S V D V
Sbjct: 7 SEFGHRTLASTPALWAS-IPCPRSELRLDLVLPSAQSFRWREQS--PAHWSGVLADQVWT 63
Query: 221 PGSSNAQNFCYSSSNDSTLRTWPVGETIDRGDHGKPRRVMPD--------------FAQV 266
+ Q C T+ RGD + R PD AQ+
Sbjct: 64 LTQTEEQLHC----------------TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQL 107
Query: 267 YSFLGSVFDPNSTGHIQRLKQMDPINFETVLLLMRNLAINLTSPEFEDHVSTCLFSALCK 326
Y GSV H Q + Q F+ V LL +D + CLFS +C
Sbjct: 108 YHHWGSV-----DSHFQEVAQ----KFQGVRLLR------------QDPIE-CLFSFICS 145
Query: 327 SC 328
SC
Sbjct: 146 SC 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,542,291
Number of Sequences: 62578
Number of extensions: 352863
Number of successful extensions: 892
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 16
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)