Query 020167
Match_columns 330
No_of_seqs 222 out of 787
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.7 3.8E-17 1.3E-21 128.0 6.2 60 65-124 4-63 (79)
2 2cu7_A KIAA1915 protein; nucle 99.7 2.3E-16 7.8E-21 120.2 8.9 55 77-131 7-61 (72)
3 2yum_A ZZZ3 protein, zinc fing 99.6 4.6E-16 1.6E-20 118.7 7.7 56 77-132 6-67 (75)
4 2elk_A SPCC24B10.08C protein; 99.5 6.7E-15 2.3E-19 108.3 6.4 48 78-125 8-57 (58)
5 1x41_A Transcriptional adaptor 99.5 1.3E-14 4.6E-19 107.0 6.5 50 77-126 6-56 (60)
6 2iw5_B Protein corest, REST co 99.5 4.9E-14 1.7E-18 130.1 6.0 65 63-127 117-181 (235)
7 1guu_A C-MYB, MYB proto-oncoge 99.4 1.2E-13 4E-18 98.5 6.4 47 78-124 2-49 (52)
8 2d9a_A B-MYB, MYB-related prot 99.4 2.4E-13 8.2E-18 99.7 5.7 49 77-125 6-55 (60)
9 1gvd_A MYB proto-oncogene prot 99.4 2.2E-13 7.4E-18 97.3 5.1 47 78-124 2-49 (52)
10 2din_A Cell division cycle 5-l 99.4 9E-13 3.1E-17 98.4 8.4 55 77-132 7-61 (66)
11 2cqr_A RSGI RUH-043, DNAJ homo 99.4 9E-13 3.1E-17 102.2 7.8 48 77-124 16-67 (73)
12 1w0t_A Telomeric repeat bindin 99.3 1.3E-12 4.5E-17 93.9 6.5 46 79-124 2-50 (53)
13 1ity_A TRF1; helix-turn-helix, 99.3 2.2E-12 7.7E-17 97.2 7.4 51 76-126 7-60 (69)
14 2dim_A Cell division cycle 5-l 99.3 1.4E-12 4.7E-17 98.4 5.9 49 77-125 7-56 (70)
15 2ltp_A Nuclear receptor corepr 99.0 1.9E-13 6.6E-18 108.5 0.0 55 76-130 13-67 (89)
16 2xag_B REST corepressor 1; ami 99.3 1.6E-12 5.5E-17 130.4 6.1 65 63-127 364-428 (482)
17 3sjm_A Telomeric repeat-bindin 99.3 6.1E-12 2.1E-16 94.7 7.0 47 78-124 10-59 (64)
18 2eqr_A N-COR1, N-COR, nuclear 99.3 8.8E-12 3E-16 92.6 6.8 44 77-120 10-53 (61)
19 2cjj_A Radialis; plant develop 99.2 9.6E-12 3.3E-16 100.5 7.0 63 78-141 7-73 (93)
20 2k9n_A MYB24; R2R3 domain, DNA 99.2 3.4E-11 1.2E-15 97.1 8.2 54 77-130 51-104 (107)
21 2llk_A Cyclin-D-binding MYB-li 99.2 3.4E-11 1.2E-15 93.4 6.5 51 70-121 14-64 (73)
22 3osg_A MYB21; transcription-DN 99.1 4.7E-11 1.6E-15 99.0 6.3 49 76-124 8-56 (126)
23 3osg_A MYB21; transcription-DN 99.1 5.1E-11 1.7E-15 98.8 6.5 51 77-127 60-110 (126)
24 3zqc_A MYB3; transcription-DNA 99.1 4.3E-11 1.5E-15 99.7 5.7 54 77-130 52-105 (131)
25 1gv2_A C-MYB, MYB proto-oncoge 99.1 4.5E-11 1.5E-15 95.5 5.2 49 77-125 54-102 (105)
26 1irz_A ARR10-B; helix-turn-hel 99.1 1.6E-10 5.5E-15 88.2 7.9 55 76-130 4-63 (64)
27 2k9n_A MYB24; R2R3 domain, DNA 99.1 1.1E-10 3.6E-15 94.2 6.0 46 79-124 1-47 (107)
28 1gv2_A C-MYB, MYB proto-oncoge 99.1 8.5E-11 2.9E-15 93.9 5.1 47 78-124 3-50 (105)
29 2cqq_A RSGI RUH-037, DNAJ homo 99.1 4.2E-10 1.4E-14 86.9 8.0 59 78-139 7-69 (72)
30 2yqk_A Arginine-glutamic acid 99.0 3.3E-10 1.1E-14 84.9 6.4 43 78-120 8-51 (63)
31 1wgx_A KIAA1903 protein; MYB D 99.0 3.7E-10 1.3E-14 88.0 6.4 45 79-123 8-56 (73)
32 1h8a_C AMV V-MYB, MYB transfor 99.0 2.9E-10 9.9E-15 94.0 6.0 48 77-124 25-73 (128)
33 3zqc_A MYB3; transcription-DNA 99.0 1.3E-10 4.4E-15 96.8 3.9 46 79-124 2-48 (131)
34 1h8a_C AMV V-MYB, MYB transfor 99.0 1.6E-10 5.5E-15 95.6 3.8 46 78-123 78-123 (128)
35 2roh_A RTBP1, telomere binding 99.0 3.1E-09 1.1E-13 89.8 10.1 53 75-127 27-84 (122)
36 2ckx_A NGTRF1, telomere bindin 98.9 1.2E-09 4.2E-14 86.5 6.9 48 80-127 1-53 (83)
37 2crg_A Metastasis associated p 98.9 2.4E-09 8.1E-14 81.9 6.0 44 77-120 6-50 (70)
38 2juh_A Telomere binding protei 98.9 3.2E-09 1.1E-13 89.6 7.4 55 73-127 11-70 (121)
39 1h89_C C-MYB, MYB proto-oncoge 98.9 1.1E-09 3.7E-14 93.5 3.6 47 77-123 108-154 (159)
40 2aje_A Telomere repeat-binding 98.8 3.1E-09 1E-13 87.7 5.9 51 76-126 10-65 (105)
41 1h89_C C-MYB, MYB proto-oncoge 98.8 3.1E-09 1.1E-13 90.6 5.6 48 77-124 56-104 (159)
42 1x58_A Hypothetical protein 49 98.8 5.3E-09 1.8E-13 79.5 5.6 46 77-122 6-54 (62)
43 4a69_C Nuclear receptor corepr 98.7 1.1E-08 3.9E-13 82.2 5.7 44 77-120 41-84 (94)
44 4eef_G F-HB80.4, designed hema 98.6 2.2E-09 7.7E-14 84.1 -1.3 43 79-121 20-66 (74)
45 1ign_A Protein (RAP1); RAP1,ye 98.6 2.2E-08 7.4E-13 93.3 3.4 50 77-126 6-61 (246)
46 3hm5_A DNA methyltransferase 1 97.8 5.4E-05 1.9E-09 61.4 7.3 52 79-130 30-86 (93)
47 1fex_A TRF2-interacting telome 97.8 3.2E-05 1.1E-09 57.4 5.0 46 79-124 2-57 (59)
48 1ug2_A 2610100B20RIK gene prod 97.4 0.0018 6.2E-08 52.8 11.0 52 78-129 32-86 (95)
49 2xag_B REST corepressor 1; ami 97.3 4.2E-05 1.5E-09 77.0 0.0 42 79-120 189-230 (482)
50 1ofc_X ISWI protein; nuclear p 97.1 0.00051 1.7E-08 65.7 5.7 49 79-127 110-159 (304)
51 4iej_A DNA methyltransferase 1 96.6 0.0055 1.9E-07 49.8 7.3 52 79-130 30-86 (93)
52 2lr8_A CAsp8-associated protei 95.6 0.00032 1.1E-08 54.4 0.0 47 79-126 14-63 (70)
53 2ebi_A DNA binding protein GT- 96.6 0.004 1.4E-07 48.1 5.9 51 77-127 2-66 (86)
54 1ofc_X ISWI protein; nuclear p 95.9 0.014 4.7E-07 55.9 6.8 53 78-130 211-279 (304)
55 4b4c_A Chromodomain-helicase-D 95.6 0.02 6.8E-07 50.1 6.3 53 77-129 5-62 (211)
56 4b4c_A Chromodomain-helicase-D 94.8 0.064 2.2E-06 46.8 7.0 49 78-127 133-196 (211)
57 2y9y_A Imitation switch protei 94.1 0.055 1.9E-06 53.2 5.6 49 79-127 123-173 (374)
58 1ign_A Protein (RAP1); RAP1,ye 93.6 0.12 3.9E-06 48.4 6.5 27 100-126 173-199 (246)
59 1ig6_A MRF-2, modulator recogn 91.6 0.2 6.8E-06 40.1 4.6 54 90-143 38-107 (107)
60 2xb0_X Chromo domain-containin 90.5 0.17 5.9E-06 47.5 3.7 27 79-105 168-195 (270)
61 2hzd_A Transcriptional enhance 88.2 1.1 3.8E-05 35.5 6.2 50 77-126 4-74 (82)
62 2y9y_A Imitation switch protei 86.3 2.2 7.5E-05 42.0 8.4 54 78-131 227-296 (374)
63 2xb0_X Chromo domain-containin 81.6 2.9 9.8E-05 39.2 6.7 45 78-122 2-51 (270)
64 2cxy_A BAF250B subunit, HBAF25 76.5 3 0.0001 34.3 4.6 39 91-129 57-107 (125)
65 2li6_A SWI/SNF chromatin-remod 72.6 3.7 0.00013 33.3 4.2 28 100-127 72-99 (116)
66 2lm1_A Lysine-specific demethy 68.6 11 0.00036 29.9 6.0 42 87-129 47-100 (107)
67 2jrz_A Histone demethylase jar 65.9 6.9 0.00024 31.8 4.5 39 90-128 45-95 (117)
68 1kkx_A Transcription regulator 64.5 9.3 0.00032 31.5 5.0 30 100-129 71-100 (123)
69 2eqy_A RBP2 like, jumonji, at 62.5 10 0.00036 31.0 5.0 39 91-129 48-98 (122)
70 3e7l_A Transcriptional regulat 59.3 17 0.00058 25.8 5.0 27 84-110 18-44 (63)
71 2jxj_A Histone demethylase jar 58.6 7.3 0.00025 30.2 3.2 28 100-127 59-90 (96)
72 1c20_A DEAD ringer protein; DN 51.5 25 0.00086 28.8 5.5 42 87-129 55-109 (128)
73 2o8x_A Probable RNA polymerase 51.0 41 0.0014 23.0 5.9 48 80-129 14-61 (70)
74 1fse_A GERE; helix-turn-helix 50.8 50 0.0017 22.8 6.4 49 78-129 8-56 (74)
75 2kk0_A AT-rich interactive dom 49.0 19 0.00067 30.3 4.5 29 100-128 87-120 (145)
76 1ntc_A Protein (nitrogen regul 47.3 29 0.00098 26.4 4.9 28 83-110 49-76 (91)
77 2rq5_A Protein jumonji; develo 47.0 17 0.0006 30.0 3.9 29 100-128 65-98 (121)
78 3c57_A Two component transcrip 46.9 72 0.0024 24.1 7.1 49 79-130 25-73 (95)
79 3i4p_A Transcriptional regulat 43.7 22 0.00076 29.3 4.1 43 85-132 3-46 (162)
80 1x3u_A Transcriptional regulat 41.8 51 0.0017 23.2 5.3 45 81-128 16-60 (79)
81 1g2h_A Transcriptional regulat 41.1 56 0.0019 23.1 5.3 31 81-112 17-48 (61)
82 1umq_A Photosynthetic apparatu 39.4 35 0.0012 26.2 4.3 29 82-110 38-66 (81)
83 2jt1_A PEFI protein; solution 39.2 58 0.002 24.7 5.4 46 87-137 6-58 (77)
84 3ulq_B Transcriptional regulat 36.9 83 0.0028 23.8 6.1 48 78-128 26-73 (90)
85 2lc3_A E3 ubiquitin-protein li 36.5 50 0.0017 26.5 4.8 56 77-132 11-85 (88)
86 1je8_A Nitrate/nitrite respons 36.3 80 0.0027 23.1 5.8 48 78-128 18-65 (82)
87 3mzy_A RNA polymerase sigma-H 33.0 98 0.0033 23.8 6.1 32 97-129 123-154 (164)
88 2e1c_A Putative HTH-type trans 31.6 64 0.0022 27.0 5.1 44 84-132 26-70 (171)
89 2dbb_A Putative HTH-type trans 31.0 1.1E+02 0.0037 24.3 6.2 43 85-132 9-52 (151)
90 1eto_A FIS, factor for inversi 30.9 74 0.0025 25.0 5.0 27 84-110 57-83 (98)
91 3fdq_A Motility gene repressor 30.7 1.4E+02 0.0047 26.2 7.0 64 78-144 68-143 (170)
92 3hug_A RNA polymerase sigma fa 30.5 1.2E+02 0.0042 22.2 6.0 32 97-129 52-83 (92)
93 1ku3_A Sigma factor SIGA; heli 30.2 1.4E+02 0.0047 21.0 6.0 47 81-128 10-59 (73)
94 1p4w_A RCSB; solution structur 27.6 1.5E+02 0.0051 22.9 6.2 47 79-128 32-78 (99)
95 2cyy_A Putative HTH-type trans 27.2 1.4E+02 0.0048 23.8 6.2 43 85-132 7-50 (151)
96 2rnj_A Response regulator prot 24.8 1.2E+02 0.004 22.4 5.0 48 79-129 27-74 (91)
97 2p7v_B Sigma-70, RNA polymeras 23.0 1.3E+02 0.0045 20.8 4.7 46 83-129 7-55 (68)
98 2cg4_A Regulatory protein ASNC 22.5 1.9E+02 0.0066 23.0 6.2 43 85-132 8-51 (152)
99 1qgp_A Protein (double strande 22.3 1.2E+02 0.004 22.5 4.5 46 83-133 12-61 (77)
100 1qbj_A Protein (double-strande 22.0 1.7E+02 0.0058 22.1 5.4 48 84-136 9-60 (81)
101 1or7_A Sigma-24, RNA polymeras 21.2 2E+02 0.0068 23.0 6.1 31 98-129 156-186 (194)
102 2juh_A Telomere binding protei 21.0 52 0.0018 27.4 2.5 25 79-103 79-103 (121)
103 2yqf_A Ankyrin-1; death domain 20.7 1.6E+02 0.0055 23.1 5.3 33 83-116 14-46 (111)
104 2p5v_A Transcriptional regulat 20.3 1.8E+02 0.0062 23.4 5.7 44 84-132 9-53 (162)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=128.01 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=55.9
Q ss_pred CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 65 PSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 65 ~~kKirkPy~i~k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
+++|.+++++....+..||.|||++||+||++||++|.+||++|++||..|||.||++|+
T Consensus 4 g~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 4 GSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp SSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred cccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 467888999888899999999999999999999999999999999999999999997763
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=2.3e-16 Score=120.15 Aligned_cols=55 Identities=40% Similarity=0.696 Sum_probs=51.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 131 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g 131 (330)
.+++.||+|||++|++++++||.+|..||++|++||..|||+||++|+.+..+.|
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g 61 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999999999999999999986664
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.6e-16 Score=118.74 Aligned_cols=56 Identities=36% Similarity=0.668 Sum_probs=51.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC------chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020167 77 KSRESWTEQEHDKFLEALQLFD------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yG------rdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~ 132 (330)
..++.||.|||++|+++|++|| .+|.+||++|++||..|||+||++|+.++.+.|.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 3678999999999999999999 7999999999999999999999999999877664
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=6.7e-15 Score=108.30 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 020167 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG-SKTVIQIRSHAQKYFL 125 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yG-rdWkkIA~~Vg-TRT~~Q~RSHaQKYf~ 125 (330)
.++.||.|||++|++++++|| ++|++||++|+ +||..|||.||++||.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 467899999999999999999 79999999999 9999999999999975
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.3e-14 Score=107.04 Aligned_cols=50 Identities=30% Similarity=0.465 Sum_probs=46.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFLK 126 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yG-rdWkkIA~~VgTRT~~Q~RSHaQKYf~k 126 (330)
..+..||.|||++|++++++|| ++|++||++|++||..|||.||++|+..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4578999999999999999999 7999999999999999999999988653
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.45 E-value=4.9e-14 Score=130.15 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=60.2
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020167 63 EDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 63 e~~~kKirkPy~i~k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl 127 (330)
++...+.|+|+.+.+....||+||+++|++||.+||++|..||++||+||..|||+||.+|+.++
T Consensus 117 ~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 117 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp TTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred HhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999999999999999999999999999999999999887664
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.45 E-value=1.2e-13 Score=98.55 Aligned_cols=47 Identities=26% Similarity=0.522 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
+++.||.|||++|++++++||. +|..||++|++||..|||.||++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999997 9999999999999999999998886
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=2.4e-13 Score=99.66 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=45.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yG-rdWkkIA~~VgTRT~~Q~RSHaQKYf~ 125 (330)
..++.||.|||++|++++++|| ++|..||++|++||..|||.||++|+.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999 699999999999999999999987743
No 9
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.40 E-value=2.2e-13 Score=97.33 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
.++.||.|||++|++++++||. +|..||++|++||..|||.||++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999996 7999999999999999999998874
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=9e-13 Score=98.42 Aligned_cols=55 Identities=22% Similarity=0.474 Sum_probs=49.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~ 132 (330)
..++.||.|||++|++++++||.+|.+||+++ +||..|||.||+.|+....+.+.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 46789999999999999999999999999955 59999999999999998876543
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=9e-13 Score=102.20 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yG----rdWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
..++.||.||+++|++||++|| .+|.+||++|++||..|||.||+.+.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4778999999999999999999 58999999999999999999998764
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.35 E-value=1.3e-12 Score=93.89 Aligned_cols=46 Identities=15% Similarity=0.401 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 124 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yG-rdWkkIA~~Vg--TRT~~Q~RSHaQKYf 124 (330)
++.||+|||++|++++++|| ++|..||++++ +||..|||.||.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999 69999999999 999999999998875
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.33 E-value=2.2e-12 Score=97.18 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=46.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 020167 76 TKSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYFLK 126 (330)
Q Consensus 76 ~k~r~~WT~EEh~lFLEgLe~yG-rdWkkIA~~Vg--TRT~~Q~RSHaQKYf~k 126 (330)
.+.++.||.||+++|++++++|| ++|..||++++ +||..|||.||++|+..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 34679999999999999999999 69999999999 99999999999888654
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=98.41 Aligned_cols=49 Identities=14% Similarity=0.376 Sum_probs=45.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yG-rdWkkIA~~VgTRT~~Q~RSHaQKYf~ 125 (330)
.+++.||.|||++|++++++|| .+|..||++|++||..|||.||++|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999 799999999999999999999987743
No 15
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-13 Score=108.50 Aligned_cols=55 Identities=27% Similarity=0.409 Sum_probs=50.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 020167 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (330)
Q Consensus 76 ~k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~ 130 (330)
...++.||.|||++|++++++||.+|..||++|++||..||++||+.|+.++...
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 3467899999999999999999999999999999999999999999998776443
No 16
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.30 E-value=1.6e-12 Score=130.39 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=58.6
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020167 63 EDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 63 e~~~kKirkPy~i~k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl 127 (330)
+......|.++.+.+...+||+||+++|++||.+||++|..||++|||||..|||+||++|+.++
T Consensus 364 ~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 364 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp TTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred hcccccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 34555677888888899999999999999999999999999999999999999999999887764
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.28 E-value=6.1e-12 Score=94.75 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHH
Q 020167 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 124 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yG-rdWkkIA~~Vg--TRT~~Q~RSHaQKYf 124 (330)
.+..||+|||++|++++++|| ++|.+||++++ +||..|||.+|+.+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999 59999999876 899999999997763
No 18
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=8.8e-12 Score=92.57 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=41.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHa 120 (330)
+....||+||+++|++++.+||++|..||++|++||..||+.||
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999874
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.25 E-value=9.6e-12 Score=100.46 Aligned_cols=63 Identities=22% Similarity=0.455 Sum_probs=50.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 020167 78 SRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRP 141 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yG----rdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~~e~iP~pr~ 141 (330)
..+.||.||+++|+++|++|| .+|.+||++|++||..||+.||++++..+.... ...+|.|..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie-sg~vp~P~y 73 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE-SGKVPFPNY 73 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH-HSSCCC---
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh-cCCCCCCCC
Confidence 357899999999999999997 589999999999999999999999987764331 234666543
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.20 E-value=3.4e-11 Score=97.12 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=49.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~ 130 (330)
..++.||.|||.+|++++++||.+|..||++|++||..||++||..+..++.+.
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 357899999999999999999999999999999999999999999888776553
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.17 E-value=3.4e-11 Score=93.40 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=43.3
Q ss_pred CCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHH
Q 020167 70 RKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQ 121 (330)
Q Consensus 70 rkPy~i~k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQ 121 (330)
...+....+++.||+|||++|++++++||.+|..||+++ +||..|||+||.
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 344445568899999999999999999999999999999 999999999985
No 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.14 E-value=4.7e-11 Score=98.98 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=45.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 76 ~k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
...++.||.|||++|++++++||.+|+.||+++++||..||+.||++|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 3467899999999999999999999999999999999999999998775
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.14 E-value=5.1e-11 Score=98.80 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=46.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl 127 (330)
.+++.||.|||++|++++++||.+|.+||++|++||..|||+||..+..++
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999999999987776654
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.13 E-value=4.3e-11 Score=99.67 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=48.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~ 130 (330)
..++.||.|||++|++++++||.+|..||++|++||..||++||+.++.+..+.
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 357899999999999999999999999999999999999999998887765443
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.12 E-value=4.5e-11 Score=95.46 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=45.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~ 125 (330)
..++.||.||+++|++++++||.+|..||++|++||..||++||..+..
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999876543
No 26
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.12 E-value=1.6e-10 Score=88.19 Aligned_cols=55 Identities=33% Similarity=0.425 Sum_probs=49.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCc---hHHHHHHHhC--CCCHHHHHHHHHHHHHHHhhc
Q 020167 76 TKSRESWTEQEHDKFLEALQLFDR---DWKKIEAFIG--SKTVIQIRSHAQKYFLKVQKN 130 (330)
Q Consensus 76 ~k~r~~WT~EEh~lFLEgLe~yGr---dWkkIA~~Vg--TRT~~Q~RSHaQKYf~kl~k~ 130 (330)
.+.+-.||+|+|++|++|++++|. .|++|.++++ +.|..||+||.|||+.++.|.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 467899999999999999999996 4899999876 679999999999999998763
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.09 E-value=1.1e-10 Score=94.24 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
++.||.|||++|++++++||. +|..||++|++||..||+.||.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 468999999999999999995 9999999999999999999998764
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.08 E-value=8.5e-11 Score=93.86 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
.++.||.||+++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 4689999999999999999996 8999999999999999999998763
No 29
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.06 E-value=4.2e-10 Score=86.92 Aligned_cols=59 Identities=20% Similarity=0.420 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 020167 78 SRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPP 139 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yG----rdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~~e~iP~p 139 (330)
....||.||+++|.++|.+|+ .+|.+||+++ .||..||+.||+++...+ .. ....+|.|
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~-~~G~vp~P 69 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TC-SPGMVSGP 69 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CC-CSCCCSCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-Cc-cCCCCCCC
Confidence 457899999999999999998 4899999999 599999999998874442 11 23445544
No 30
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.3e-10 Score=84.93 Aligned_cols=43 Identities=19% Similarity=0.477 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHH-HhCCCCHHHHHHHH
Q 020167 78 SRESWTEQEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 120 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGrdWkkIA~-~VgTRT~~Q~RSHa 120 (330)
....||+||+++|++||.+||++|..|++ +|++||..||..+|
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence 45799999999999999999999999998 69999999999754
No 31
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.02 E-value=3.7e-10 Score=88.04 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----hHHHHHHHhCCCCHHHHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKY 123 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGr----dWkkIA~~VgTRT~~Q~RSHaQKY 123 (330)
...||.||+++|++||..|+. +|.+||++||+||.+||+.||+.+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467999999999999999985 799999999999999999987644
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.02 E-value=2.9e-10 Score=94.01 Aligned_cols=48 Identities=19% Similarity=0.437 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
..++.||.||+++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 46789999999999999999995 8999999999999999999998764
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.02 E-value=1.3e-10 Score=96.81 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yG-rdWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
++.||.|||++|++++++|| ++|..||++|++||..||+.||++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 57899999999999999999 69999999999999999999998875
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.00 E-value=1.6e-10 Score=95.56 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHH
Q 020167 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 123 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKY 123 (330)
.++.||+|||++|++++++||.+|..||++|++||..||++||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999998654
No 35
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.96 E-value=3.1e-09 Score=89.84 Aligned_cols=53 Identities=13% Similarity=0.306 Sum_probs=46.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 020167 75 ITKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 75 i~k~r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~V----gTRT~~Q~RSHaQKYf~kl 127 (330)
..+.++.||.||++.|++|+++||. +|..|++.. ..||..|||.+|.+++..-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3456889999999999999999996 999999864 7999999999999887664
No 36
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.95 E-value=1.2e-09 Score=86.46 Aligned_cols=48 Identities=10% Similarity=0.340 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHcCc-hHHHHHHH----hCCCCHHHHHHHHHHHHHHH
Q 020167 80 ESWTEQEHDKFLEALQLFDR-DWKKIEAF----IGSKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 80 ~~WT~EEh~lFLEgLe~yGr-dWkkIA~~----VgTRT~~Q~RSHaQKYf~kl 127 (330)
..||.||++.|++|+++||. +|++|++. +.+||..|||.||.+++.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999985 78999999999999887654
No 37
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.88 E-value=2.4e-09 Score=81.94 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHH-HhCCCCHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 120 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~-~VgTRT~~Q~RSHa 120 (330)
+....||+||+++|++||.+||++|..|++ +|++||..||..+|
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 467899999999999999999999999999 79999999999865
No 38
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.88 E-value=3.2e-09 Score=89.59 Aligned_cols=55 Identities=11% Similarity=0.327 Sum_probs=48.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 020167 73 YTITKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 73 y~i~k~r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~V----gTRT~~Q~RSHaQKYf~kl 127 (330)
....+.++.||.||++.|++|+++||. +|..|+++. ..||..|||.+|..++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 334567899999999999999999996 999999875 7899999999999887664
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.85 E-value=1.1e-09 Score=93.46 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 123 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKY 123 (330)
..++.||.||+.+|++++++||.+|..||++|++||..||++||+.+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998654
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.84 E-value=3.1e-09 Score=87.71 Aligned_cols=51 Identities=10% Similarity=0.353 Sum_probs=45.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 020167 76 TKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLK 126 (330)
Q Consensus 76 ~k~r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~V----gTRT~~Q~RSHaQKYf~k 126 (330)
.+.+..||.||++.|++|+++||. +|..|++.. ..||..|||.+|.+++.+
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999996 999999754 789999999999887654
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.83 E-value=3.1e-09 Score=90.62 Aligned_cols=48 Identities=17% Similarity=0.384 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf 124 (330)
..++.||.||+++|++++++||. +|..||+++++||..|||.||++|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 35799999999999999999995 8999999999999999999998764
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.81 E-value=5.3e-09 Score=79.50 Aligned_cols=46 Identities=13% Similarity=0.427 Sum_probs=41.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHH---HHhCCCCHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIE---AFIGSKTVIQIRSHAQK 122 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA---~~VgTRT~~Q~RSHaQK 122 (330)
.++..||+||++.|++|+++||..|++|+ .|+..||...++.+|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHH
Confidence 46789999999999999999999999999 47889999999997643
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.73 E-value=1.1e-08 Score=82.25 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=41.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHa 120 (330)
+....||+||+++|.+++.+||++|.+|+++|++||..||..|+
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 35789999999999999999999999999999999999999874
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.62 E-value=2.2e-09 Score=84.09 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----hHHHHHHHhCCCCHHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQ 121 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGr----dWkkIA~~VgTRT~~Q~RSHaQ 121 (330)
...||.||+++|..||.+|++ +|.+||+.||+||+.||+.||+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 468999999999999999995 7999999999999999999986
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.57 E-value=2.2e-08 Score=93.29 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=44.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCch------HHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFDRD------WKKIEAFIGSKTVIQIRSHAQKYFLK 126 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yGrd------WkkIA~~VgTRT~~Q~RSHaQKYf~k 126 (330)
.++..||+||++++|+++++||.. |..||+++++||..|||+||..|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 356799999999999999999964 99999999999999999999998655
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.79 E-value=5.4e-05 Score=61.38 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 020167 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 130 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGrdWkkIA~~V-----gTRT~~Q~RSHaQKYf~kl~k~ 130 (330)
...||.||.+.|++.+++||.+|-.|+... +.||.+++|+++-....++.+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999887 5799999999876666665543
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.75 E-value=3.2e-05 Score=57.40 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-chHHHHHH-HhCCCCHHHHHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLF--------D-RDWKKIEA-FIGSKTVIQIRSHAQKYF 124 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~y--------G-rdWkkIA~-~VgTRT~~Q~RSHaQKYf 124 (330)
|..||+|||..|++.|..| | .-|++|++ .+..+|..++|.||.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 5 37999999 899999999999988764
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.39 E-value=0.0018 Score=52.81 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc---hHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020167 78 SRESWTEQEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGr---dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
.--.||.|||+-+|.+.++-|. .|..||+.++.|++.||++|+|....-+++
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999995 899999999999999999999886555444
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.25 E-value=4.2e-05 Score=77.05 Aligned_cols=42 Identities=14% Similarity=0.426 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHa 120 (330)
...||++|..+|.++|.+||++|.+|+++|++|+..+|..||
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 358999999999999999999999999999999999999875
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.10 E-value=0.00051 Score=65.68 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf~kl 127 (330)
=+.||..+-..|+.|+.+||+ +|..||+.|++||..+|+.|++-++.+.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 357999999999999999998 9999999999999999999998877665
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.62 E-value=0.0055 Score=49.79 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 020167 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 130 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGrdWkkIA~~V-----gTRT~~Q~RSHaQKYf~kl~k~ 130 (330)
...||.||.+.|.+..++|+-+|--|+... +.||.+++|.|+-....++.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999654 3799999999987766666553
No 52
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.63 E-value=0.00032 Score=54.45 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCc---hHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLK 126 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGr---dWkkIA~~VgTRT~~Q~RSHaQKYf~k 126 (330)
--.||.|||..+|...++-|. .|..||+.+ .||+.||..|+|....-
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 347999999999999999996 899999988 79999999998875433
No 53
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.56 E-value=0.004 Score=48.06 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=40.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC----------chHHHHHHHhC----CCCHHHHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFD----------RDWKKIEAFIG----SKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yG----------rdWkkIA~~Vg----TRT~~Q~RSHaQKYf~kl 127 (330)
+....||.+|..+||++..... ..|..||+.+. .||+.||+..|......-
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999986532 17999997654 799999999887654443
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.87 E-value=0.014 Score=55.87 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc----hHHHHH------------HHhCCCCHHHHHHHHHHHHHHHhhc
Q 020167 78 SRESWTEQEHDKFLEALQLFDR----DWKKIE------------AFIGSKTVIQIRSHAQKYFLKVQKN 130 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGr----dWkkIA------------~~VgTRT~~Q~RSHaQKYf~kl~k~ 130 (330)
++..||+|||..||-+|.+||- +|..|. -|+.+||+.+|..|++-...-+.|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999993 899996 3788999999999999877776664
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.59 E-value=0.02 Score=50.07 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=43.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC---chHHHHHHH--hCCCCHHHHHHHHHHHHHHHhh
Q 020167 77 KSRESWTEQEHDKFLEALQLFD---RDWKKIEAF--IGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yG---rdWkkIA~~--VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
+....||+.|-..|+.++.+|| .+|..|++. +..||..+|+.+++.+.....+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999 389999865 5589999999988877666543
No 56
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.78 E-value=0.064 Score=46.81 Aligned_cols=49 Identities=16% Similarity=0.399 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHH--H------------hCCCCHHHHHHHHHHHHHHH
Q 020167 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEA--F------------IGSKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yG-rdWkkIA~--~------------VgTRT~~Q~RSHaQKYf~kl 127 (330)
....||.+||..||.|+.+|| ++|.+|-. - ..+++..++..|+. |+.++
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~ 196 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL 196 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence 345799999999999999999 79999964 1 12456778888885 44443
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.14 E-value=0.055 Score=53.16 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGr-dWkkIA~~Vg-TRT~~Q~RSHaQKYf~kl 127 (330)
=..||..+=..|+.|.++||+ +...||..|+ +||..+|+.+++-|+.+.
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence 358999999999999999998 7999999998 999999999887766553
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=93.64 E-value=0.12 Score=48.43 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=24.6
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020167 100 DWKKIEAFIGSKTVIQIRSHAQKYFLK 126 (330)
Q Consensus 100 dWkkIA~~VgTRT~~Q~RSHaQKYf~k 126 (330)
.|++||++++++|...+|.+|.|+..+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhh
Confidence 799999999999999999999986555
No 59
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=91.61 E-value=0.2 Score=40.14 Aligned_cols=54 Identities=24% Similarity=0.514 Sum_probs=36.6
Q ss_pred HHHHHHHcCc--------hHHHHHHHhCC-----CCHHHHHHHHHHHHH---HHhhcCCCCCCCCCCCCC
Q 020167 90 FLEALQLFDR--------DWKKIEAFIGS-----KTVIQIRSHAQKYFL---KVQKNGTSEHVPPPRPKR 143 (330)
Q Consensus 90 FLEgLe~yGr--------dWkkIA~~VgT-----RT~~Q~RSHaQKYf~---kl~k~g~~e~iP~pr~KR 143 (330)
|-.++...|+ .|++|++.+|- -...++|.||.+|+. ...+....+.+|+..||+
T Consensus 38 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 38 MFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 3445677773 79999988873 224689999999843 333444556788777664
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.53 E-value=0.17 Score=47.49 Aligned_cols=27 Identities=26% Similarity=0.694 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHH
Q 020167 79 RESWTEQEHDKFLEALQLFD-RDWKKIE 105 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yG-rdWkkIA 105 (330)
.-.|+.+|+..||.||.+|| +.|.+|.
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 35799999999999999999 6999997
No 61
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=88.22 E-value=1.1 Score=35.55 Aligned_cols=50 Identities=26% Similarity=0.444 Sum_probs=37.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC---c-hH------------HHHHHHhC-----CCCHHHHHHHHHHHHHH
Q 020167 77 KSRESWTEQEHDKFLEALQLFD---R-DW------------KKIEAFIG-----SKTVIQIRSHAQKYFLK 126 (330)
Q Consensus 77 k~r~~WT~EEh~lFLEgLe~yG---r-dW------------kkIA~~Vg-----TRT~~Q~RSHaQKYf~k 126 (330)
+..+.|.++=|..|+|||+.|- + .+ .-|+.||- .||..||-||-|-.-..
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 4578999999999999999985 1 11 12555543 69999999999865443
No 62
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=86.31 E-value=2.2 Score=41.97 Aligned_cols=54 Identities=13% Similarity=0.270 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc----hHHHHHH------------HhCCCCHHHHHHHHHHHHHHHhhcC
Q 020167 78 SRESWTEQEHDKFLEALQLFDR----DWKKIEA------------FIGSKTVIQIRSHAQKYFLKVQKNG 131 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGr----dWkkIA~------------~VgTRT~~Q~RSHaQKYf~kl~k~g 131 (330)
++..||+|||..||-+|.+||- .|.+|-. |+.+||+.+|.-|..-...-|.|..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~ 296 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEF 296 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999993 7999942 3779999999999988777777653
No 63
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=81.62 E-value=2.9 Score=39.25 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---chHHHHHH--HhCCCCHHHHHHHHHH
Q 020167 78 SRESWTEQEHDKFLEALQLFD---RDWKKIEA--FIGSKTVIQIRSHAQK 122 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yG---rdWkkIA~--~VgTRT~~Q~RSHaQK 122 (330)
.++.||+.|-..|+.++.+|| .+|..|++ -+..|+...++.-++-
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~ 51 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDE 51 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 357899999999999999999 38999973 4667888887765554
No 64
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=76.51 E-value=3 Score=34.30 Aligned_cols=39 Identities=8% Similarity=0.299 Sum_probs=28.0
Q ss_pred HHHHHHcCc--------hHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 020167 91 LEALQLFDR--------DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 91 LEgLe~yGr--------dWkkIA~~VgTRT----~~Q~RSHaQKYf~kl~k 129 (330)
-.+|...|+ .|++|++.+|--+ ..++|.||.+|+....+
T Consensus 57 y~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 57 YVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 334566663 7999999887543 57899999999665443
No 65
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=72.63 E-value=3.7 Score=33.33 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020167 100 DWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (330)
Q Consensus 100 dWkkIA~~VgTRT~~Q~RSHaQKYf~kl 127 (330)
.|+.|++.+|-....++|.||.+|+..-
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 7999999988766889999999986553
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=68.63 E-value=11 Score=29.85 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCc--------hHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 020167 87 HDKFLEALQLFDR--------DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 87 h~lFLEgLe~yGr--------dWkkIA~~VgTRT----~~Q~RSHaQKYf~kl~k 129 (330)
..+|.+ +...|+ .|+.|++.+|--. ..++|.||.+|+.....
T Consensus 47 ~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 47 YTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp HHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 444444 556662 7999999887543 57999999999766543
No 67
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=65.92 E-value=6.9 Score=31.79 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=28.3
Q ss_pred HHHHHHHcCc--------hHHHHHHHhCCCC----HHHHHHHHHHHHHHHh
Q 020167 90 FLEALQLFDR--------DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQ 128 (330)
Q Consensus 90 FLEgLe~yGr--------dWkkIA~~VgTRT----~~Q~RSHaQKYf~kl~ 128 (330)
|-..+...|+ .|++|++.+|-.. ..++|.||.+|+....
T Consensus 45 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 45 LSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3445666663 7999999887543 6789999999865543
No 68
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=64.51 E-value=9.3 Score=31.54 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=26.1
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020167 100 DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 100 dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
.|++|++-+|-....++|.||.+|+..-..
T Consensus 71 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 71 QWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 799999998876699999999999877655
No 69
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=62.50 E-value=10 Score=30.99 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.0
Q ss_pred HHHHHHcCc--------hHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 020167 91 LEALQLFDR--------DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 91 LEgLe~yGr--------dWkkIA~~VgTRT----~~Q~RSHaQKYf~kl~k 129 (330)
-..+...|+ .|++|++.+|-.. ..++|.||.+|+..-..
T Consensus 48 y~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 48 NKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 344666663 7999999887532 46999999998766443
No 70
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=59.27 E-value=17 Score=25.84 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCC
Q 020167 84 EQEHDKFLEALQLFDRDWKKIEAFIGS 110 (330)
Q Consensus 84 ~EEh~lFLEgLe~yGrdWkkIA~~VgT 110 (330)
+-|.+.+.++|+.+|+++.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 357788889999999999999999985
No 71
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=58.57 E-value=7.3 Score=30.21 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=21.8
Q ss_pred hHHHHHHHhCCCC----HHHHHHHHHHHHHHH
Q 020167 100 DWKKIEAFIGSKT----VIQIRSHAQKYFLKV 127 (330)
Q Consensus 100 dWkkIA~~VgTRT----~~Q~RSHaQKYf~kl 127 (330)
.|++|++.+|--. ..++|.||.+|+...
T Consensus 59 ~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 59 KWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp THHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred cHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 7999999887422 678999999886654
No 72
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=51.53 E-value=25 Score=28.75 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCc--------hHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 020167 87 HDKFLEALQLFDR--------DWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 87 h~lFLEgLe~yGr--------dWkkIA~~VgTR-----T~~Q~RSHaQKYf~kl~k 129 (330)
..+|. .+...|+ .|++|++.+|-- ...++|.||.+|+.....
T Consensus 55 ~~Ly~-~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 55 YELYN-LVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHH-HHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHH-HHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 33443 4566663 799999988732 268999999999665443
No 73
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.02 E-value=41 Score=22.97 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020167 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 80 ~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
..+++.|.+.|. ..-..|..++.||+.+|- +...|+.|..+-..++.+
T Consensus 14 ~~L~~~~r~il~-l~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALL-LTQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHH-HHHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHH-HHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 456766665554 333567899999999985 778888877776666643
No 74
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=50.78 E-value=50 Score=22.78 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020167 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
....+|+.|.+.|.. + ..|...++||+.+|- +...|+.|..+-+.++..
T Consensus 8 ~~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHCC
Confidence 346688888877766 4 567799999999986 788899888777777643
No 75
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=48.97 E-value=19 Score=30.25 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=22.2
Q ss_pred hHHHHHHHhCCC-----CHHHHHHHHHHHHHHHh
Q 020167 100 DWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQ 128 (330)
Q Consensus 100 dWkkIA~~VgTR-----T~~Q~RSHaQKYf~kl~ 128 (330)
.|++|++-+|-- ...++|.||.+|+....
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 799999888742 25799999999955543
No 76
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=47.27 E-value=29 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCchHHHHHHHhCC
Q 020167 83 TEQEHDKFLEALQLFDRDWKKIEAFIGS 110 (330)
Q Consensus 83 T~EEh~lFLEgLe~yGrdWkkIA~~VgT 110 (330)
.+-|...+.++|+++|++..+.|+.+|-
T Consensus 49 ~~~E~~~i~~aL~~~~gn~~~aA~~LGI 76 (91)
T 1ntc_A 49 PELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp HHHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 3457788889999999999999999984
No 77
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=47.03 E-value=17 Score=30.01 Aligned_cols=29 Identities=14% Similarity=0.460 Sum_probs=22.7
Q ss_pred hHHHHHHHhCC-----CCHHHHHHHHHHHHHHHh
Q 020167 100 DWKKIEAFIGS-----KTVIQIRSHAQKYFLKVQ 128 (330)
Q Consensus 100 dWkkIA~~VgT-----RT~~Q~RSHaQKYf~kl~ 128 (330)
.|++|++-+|- -...++|.||.||+..-.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 79999988863 235789999999977654
No 78
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.87 E-value=72 Score=24.06 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 020167 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~ 130 (330)
-...|+.|.+.|.. + ..|..-+.||+.+|- +..-|+.|..+-+.++...
T Consensus 25 l~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 25 LSGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp --CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 35688888877766 4 778899999999986 8899999988888887543
No 79
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.69 E-value=22 Score=29.30 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020167 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (330)
Q Consensus 85 EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~ 132 (330)
+-+.++|+.|++-|+ .|+.||+.+|- +...|+.|.+ ++.+.|.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl~----~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRIQ----KMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHHH----HHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHHH----HHHHCCC
Confidence 567889999999997 99999999985 7888988754 4556664
No 80
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.81 E-value=51 Score=23.22 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020167 81 SWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (330)
Q Consensus 81 ~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~ 128 (330)
.+|+.|.+.|.. + ..|...+.||+.+|- +...|+.|..+-+.++.
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 466777666655 4 567799999999875 78889988777776664
No 81
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=41.05 E-value=56 Score=23.07 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHhCC-CC
Q 020167 81 SWTEQEHDKFLEALQLFDRDWKKIEAFIGS-KT 112 (330)
Q Consensus 81 ~WT~EEh~lFLEgLe~yGrdWkkIA~~VgT-RT 112 (330)
...+-|.+.+.++|+.+ ++..+.|+.+|- |+
T Consensus 17 ~l~~~Er~~I~~aL~~~-gn~~~aA~~LGIsr~ 48 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY-PSTRKLAQRLGVSHT 48 (61)
T ss_dssp SCSHHHHHHHHHHHHHS-CSHHHHHHHTTSCTH
T ss_pred HHHHHHHHHHHHHHHHh-CCHHHHHHHhCCCHH
Confidence 35567888999999999 788899999984 44
No 82
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=39.36 E-value=35 Score=26.21 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHhCC
Q 020167 82 WTEQEHDKFLEALQLFDRDWKKIEAFIGS 110 (330)
Q Consensus 82 WT~EEh~lFLEgLe~yGrdWkkIA~~VgT 110 (330)
..+-|.+.+.++|+++|++..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 33557778889999999999999999984
No 83
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=39.23 E-value=58 Score=24.66 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=34.7
Q ss_pred HHHHHHHHHHc-----Cc--hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Q 020167 87 HDKFLEALQLF-----DR--DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVP 137 (330)
Q Consensus 87 h~lFLEgLe~y-----Gr--dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~~e~iP 137 (330)
.+..|+.|+.+ |. .-..||+.+|- +...|+. |+..+.+.|.....|
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S~~TVrr----~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGL-SIYQVRL----YLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHHH----HHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-CHHHHHH----HHHHHHHCCcEEecC
Confidence 45677888887 54 79999999998 7777775 677788888765554
No 84
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=36.94 E-value=83 Score=23.83 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020167 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~ 128 (330)
....-|..|.+.|.... -|..-+.||+.++- +..-|+.|..+-+.|+.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~i-S~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALHL-SKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 34567888887765544 78899999999885 78999999888877763
No 85
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=36.49 E-value=50 Score=26.45 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=42.4
Q ss_pred cCCCCCCHHH-----------HHHHHHHHHHcC-----chHHH---HHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020167 77 KSRESWTEQE-----------HDKFLEALQLFD-----RDWKK---IEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (330)
Q Consensus 77 k~r~~WT~EE-----------h~lFLEgLe~yG-----rdWkk---IA~~VgTRT~~Q~RSHaQKYf~kl~k~g~ 132 (330)
-..+.||.|+ ..-++.-|+.+| +.|+- |.....++...|...-|.++|..-.+.|+
T Consensus 11 ~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVaKtanK~qLiaAY~~lfE~~~~~g~ 85 (88)
T 2lc3_A 11 GKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRKNRNCSQLIAAYKDFCEHGTKSGL 85 (88)
T ss_dssp CCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHHHHSCHHHHHHHHHHHHHHTCTTTS
T ss_pred CccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHHhcCcHHHHHHHHHHHHhccccccc
Confidence 3578999999 445677788888 36765 55666789999999988888887666554
No 86
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.34 E-value=80 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020167 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~ 128 (330)
.-...|+.|.+.|.. + ..|...++||+.+|- +...|+.|..+-+.++.
T Consensus 18 ~~~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 18 DVNQLTPRERDILKL-I-AQGLPNKMIARRLDI-TESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CGGGSCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 345688888877766 4 567899999999884 78889998877777764
No 87
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.05 E-value=98 Score=23.78 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=22.2
Q ss_pred cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020167 97 FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 97 yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
.|...+.||+.+|- +...|+.|..+-..++++
T Consensus 123 ~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 123 RGYSYREIATILSK-NLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 46689999999884 677777766655555543
No 88
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.59 E-value=64 Score=27.04 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020167 84 EQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (330)
Q Consensus 84 ~EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~ 132 (330)
++-+.++|+.|+..|+ .|+.||+.+|- +...|+.|. .++.+.|.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lgl-S~~tv~~rl----~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGL-AESTIHERI----RKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHHH----HHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 4567789999999987 99999999985 888888764 45666665
No 89
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=30.95 E-value=1.1e+02 Score=24.35 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020167 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (330)
Q Consensus 85 EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~ 132 (330)
+-+..+|+.|+..|+ .|+.||+.+|- +...|+.|. .++.+.|.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l----~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT-TRQRIARRI----DKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS-CHHHHHHHH----HHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 456688899999887 99999999985 777887764 44555554
No 90
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=30.88 E-value=74 Score=24.99 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCC
Q 020167 84 EQEHDKFLEALQLFDRDWKKIEAFIGS 110 (330)
Q Consensus 84 ~EEh~lFLEgLe~yGrdWkkIA~~VgT 110 (330)
+-|...+.++|+.+|++..+.|+.+|-
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGI 83 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGI 83 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 457778889999999999999999984
No 91
>3fdq_A Motility gene repressor MOGR; protein-DNA complex, helix-turn-helix, minor groove binding, cytoplasm; 1.75A {Listeria monocytogenes}
Probab=30.65 E-value=1.4e+02 Score=26.16 Aligned_cols=64 Identities=28% Similarity=0.367 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHH---HcCchHHHHHHHhC-------CCCHHHHHHHHHHHHHHHhhcCCCCCCCC--CCCCCC
Q 020167 78 SRESWTEQEHDKFLEALQ---LFDRDWKKIEAFIG-------SKTVIQIRSHAQKYFLKVQKNGTSEHVPP--PRPKRK 144 (330)
Q Consensus 78 ~r~~WT~EEh~lFLEgLe---~yGrdWkkIA~~Vg-------TRT~~Q~RSHaQKYf~kl~k~g~~e~iP~--pr~KRk 144 (330)
..-.|=.-|-++|-+.++ .+|-+--.|+++|. -||+.|..+- ||.-....-..++|+. |.||||
T Consensus 68 S~i~WLKsELELLya~YQf~q~h~lni~~iSk~iSkn~L~lFPKTeSQLQNT---YYKLKk~ei~fEnI~K~KPGRKrK 143 (170)
T 3fdq_A 68 SNISWLKIELELLSACYQIAILEDMKVLDISEMLSLNDLRIFPKTPSQLQNT---YYKLKKELIQVEDIPKNKPGRKRK 143 (170)
T ss_dssp SSEEECHHHHHHHHHHHHHHHHTTCCHHHHHHHHSTTTTCSSSSCHHHHHHH---HHHHHTTSSCSSCEECCCCSCCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCchhhHHHHhhHhhhccCCCCHHHHHHH---HHHHHhhhcchhhccccCCCcccc
Confidence 345799999888887664 55667788888875 5899998874 3332222334566665 445554
No 92
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=30.55 E-value=1.2e+02 Score=22.23 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=22.3
Q ss_pred cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020167 97 FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 97 yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
.|...+.||+.+|- +...|+.|..+-+.++++
T Consensus 52 ~g~s~~eIA~~lgi-s~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 52 RGWSTAQIATDLGI-AEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 36688999998874 667777776666555543
No 93
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=30.20 E-value=1.4e+02 Score=20.98 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHH---cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020167 81 SWTEQEHDKFLEALQL---FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (330)
Q Consensus 81 ~WT~EEh~lFLEgLe~---yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~ 128 (330)
.-++.|.+.|..-.-. .|..|+.||+.+|- +...|+.|..+-+.++.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~i-s~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGV-TRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 3456666555443321 46699999999884 67777777666677775
No 94
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.63 E-value=1.5e+02 Score=22.92 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020167 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~ 128 (330)
...-|+.|.+.|.. + ..|...++||+.++- +...|+.|...-+.++.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 35568888877755 3 368899999999886 88999998887777763
No 95
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=27.19 E-value=1.4e+02 Score=23.84 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020167 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (330)
Q Consensus 85 EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~ 132 (330)
+-+..+|+.|+..|+ .|+.||+.+|- +...|+.|.+ ++.+.|.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l~----~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGL-AESTIHERIR----KLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCS-CHHHHHHHHH----HHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHH----HHHHCCC
Confidence 456688999999987 99999999985 7888887654 4555554
No 96
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.81 E-value=1.2e+02 Score=22.41 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020167 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
-...|+.|.+.|.. + ..|...+.||+.+|- +..-|+.|..+-+.++..
T Consensus 27 l~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 27 YEMLTEREMEILLL-I-AKGYSNQEIASASHI-TIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGGCCSHHHHHHHH-H-HTTCCTTHHHHHHTC-CHHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHCC
Confidence 34678888877766 4 678899999999875 788999988777777643
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=23.01 E-value=1.3e+02 Score=20.82 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHH---HcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020167 83 TEQEHDKFLEALQ---LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 83 T~EEh~lFLEgLe---~yGrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
++.|.+.|..-.- ..|..++.||+.+|- +...|+.|..+-+.++.+
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgi-s~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDV-TRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 4455544443221 136799999999884 788888877666666643
No 98
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=22.47 E-value=1.9e+02 Score=22.96 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020167 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (330)
Q Consensus 85 EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~ 132 (330)
+-+.++|+.|+..|+ .++.||+.+|- +...|+.|.+ ++.+.|.
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l~----~L~~~G~ 51 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQFGV-SPETIHVRVE----KMKQAGI 51 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTS-CHHHHHHHHH----HHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHH----HHHHcCC
Confidence 446688999999987 99999999985 7888887654 4555554
No 99
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.26 E-value=1.2e+02 Score=22.55 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHcC---c-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCC
Q 020167 83 TEQEHDKFLEALQLFD---R-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTS 133 (330)
Q Consensus 83 T~EEh~lFLEgLe~yG---r-dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~~ 133 (330)
+.+-+..+|+.|+..| + .-..||+.+| -+...|+. ++.++.+.|.-
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg-vs~~tV~~----~L~~L~~~G~I 61 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLG-TPKKEINR----VLYSLAKKGKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC-CCHHHHHH----HHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC-cCHHHHHH----HHHHHHHCCCE
Confidence 3556688899999999 5 7899999998 45556665 45666666653
No 100
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=21.96 E-value=1.7e+02 Score=22.14 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcC---c-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 020167 84 EQEHDKFLEALQLFD---R-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHV 136 (330)
Q Consensus 84 ~EEh~lFLEgLe~yG---r-dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~~e~i 136 (330)
.+-++.+|+.|+..| + .-..||+.+| -+...|+. ++.++.+.|....+
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg-vsr~tV~~----~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLG-TPKKEINR----VLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHT-CCHHHHHH----HHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHC-cCHHHHHH----HHHHHHHCCCEEec
Confidence 455778899999999 5 7899999998 34455654 56677777764333
No 101
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.24 E-value=2e+02 Score=22.96 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=22.0
Q ss_pred CchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020167 98 DRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (330)
Q Consensus 98 GrdWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k 129 (330)
|..++.||+.+|- +...|++|..+-..++++
T Consensus 156 g~s~~EIA~~lgi-s~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 156 GLSYEEIAAIMDC-PVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CCCHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 5588899998884 677777776666555543
No 102
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=20.96 E-value=52 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHH
Q 020167 79 RESWTEQEHDKFLEALQLFDRDWKK 103 (330)
Q Consensus 79 r~~WT~EEh~lFLEgLe~yGrdWkk 103 (330)
...|++||.++++++...||..|.+
T Consensus 79 g~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 79 GEPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHccchhc
Confidence 4499999999999999999998876
No 103
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=20.74 E-value=1.6e+02 Score=23.07 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHH
Q 020167 83 TEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQI 116 (330)
Q Consensus 83 T~EEh~lFLEgLe~yGrdWkkIA~~VgTRT~~Q~ 116 (330)
++.-+..|...-+..|.+|+++|..+|- +..+|
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~Lg~-s~~~I 46 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELARELQF-SVEDI 46 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHTTC-CHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHcCC-CHHHH
Confidence 5666667777778889999999999884 34443
No 104
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=20.32 E-value=1.8e+02 Score=23.43 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020167 84 EQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (330)
Q Consensus 84 ~EEh~lFLEgLe~yGr-dWkkIA~~VgTRT~~Q~RSHaQKYf~kl~k~g~ 132 (330)
++-+..+|+.|+..|+ .++.||+.+|- +...|+.| +.++.+.|.
T Consensus 9 d~~~~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~----l~~L~~~G~ 53 (162)
T 2p5v_A 9 DKTDIKILQVLQENGRLTNVELSERVAL-SPSPCLRR----LKQLEDAGI 53 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHH----HHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 3456688999999987 99999999985 77778765 455666665
Done!