Query 020168
Match_columns 330
No_of_seqs 209 out of 1700
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 2.2E-64 4.7E-69 454.7 32.4 301 1-303 346-647 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 4.2E-60 9.1E-65 475.7 37.0 329 2-330 317-653 (653)
3 PLN03184 chloroplast Hsp70; Pr 100.0 1.4E-52 3.1E-57 421.4 37.5 316 2-328 350-668 (673)
4 PRK13411 molecular chaperone D 100.0 2.1E-51 4.6E-56 412.4 37.4 294 2-303 312-605 (653)
5 PRK00290 dnaK molecular chaper 100.0 2.7E-51 5.8E-56 411.5 37.9 314 2-330 311-624 (627)
6 PRK13410 molecular chaperone D 100.0 8.4E-51 1.8E-55 407.5 33.1 292 2-299 313-607 (668)
7 KOG0101 Molecular chaperones H 100.0 2.8E-51 6.1E-56 394.7 27.9 298 1-300 318-615 (620)
8 PTZ00400 DnaK-type molecular c 100.0 7.1E-50 1.5E-54 401.7 33.4 289 2-301 352-640 (663)
9 CHL00094 dnaK heat shock prote 100.0 2.7E-49 5.9E-54 396.0 34.8 287 2-299 313-599 (621)
10 TIGR02350 prok_dnaK chaperone 100.0 4E-49 8.6E-54 394.2 35.3 286 2-298 309-594 (595)
11 PTZ00186 heat shock 70 kDa pre 100.0 3.7E-49 8E-54 394.2 34.7 291 1-301 337-627 (657)
12 TIGR01991 HscA Fe-S protein as 100.0 6.2E-48 1.3E-52 384.2 36.5 289 2-299 297-585 (599)
13 PRK05183 hscA chaperone protei 100.0 7.7E-48 1.7E-52 384.4 34.8 289 2-299 313-601 (616)
14 PRK01433 hscA chaperone protei 100.0 2.1E-46 4.6E-51 371.3 36.6 278 2-292 295-572 (595)
15 PF00012 HSP70: Hsp70 protein; 100.0 2.5E-44 5.4E-49 361.2 33.9 289 2-299 313-602 (602)
16 KOG0103 Molecular chaperones H 100.0 5.8E-42 1.3E-46 327.6 30.2 288 2-299 318-646 (727)
17 KOG0102 Molecular chaperones m 100.0 1.9E-43 4.2E-48 329.1 18.8 293 1-301 337-629 (640)
18 COG0443 DnaK Molecular chapero 100.0 2.6E-38 5.7E-43 312.1 29.1 286 1-299 293-578 (579)
19 KOG0104 Molecular chaperones G 100.0 5E-35 1.1E-39 281.1 22.7 291 1-301 348-739 (902)
20 PRK11678 putative chaperone; P 98.8 4E-09 8.7E-14 102.1 6.4 62 2-67 387-448 (450)
21 PRK13928 rod shape-determining 98.8 3.4E-09 7.5E-14 99.3 5.7 65 2-67 257-324 (336)
22 PRK13927 rod shape-determining 98.5 9.7E-08 2.1E-12 89.4 5.3 65 2-67 258-325 (334)
23 TIGR00904 mreB cell shape dete 98.5 2E-07 4.4E-12 87.2 5.6 64 2-66 261-327 (333)
24 PRK13929 rod-share determining 98.4 3.3E-07 7.3E-12 85.8 5.0 62 2-64 260-324 (335)
25 PRK13930 rod shape-determining 98.3 4.5E-07 9.8E-12 84.8 4.7 65 2-67 262-329 (335)
26 PRK15080 ethanolamine utilizat 98.3 9.3E-07 2E-11 80.1 5.2 48 16-64 220-267 (267)
27 TIGR02529 EutJ ethanolamine ut 98.1 1.3E-06 2.9E-11 77.8 2.9 49 13-62 190-238 (239)
28 PRK09472 ftsA cell division pr 97.8 2.7E-05 5.8E-10 75.2 5.9 63 3-66 314-388 (420)
29 TIGR01174 ftsA cell division p 97.7 3.6E-05 7.9E-10 73.1 3.8 60 2-63 298-371 (371)
30 PF02782 FGGY_C: FGGY family o 96.6 0.0028 6.1E-08 54.4 4.4 48 17-66 149-196 (198)
31 PLN02669 xylulokinase 96.2 0.011 2.4E-07 59.2 6.7 49 16-66 444-492 (556)
32 PRK15027 xylulokinase; Provisi 96.1 0.011 2.4E-07 58.3 6.4 59 6-68 378-436 (484)
33 KOG2531 Sugar (pentulose and h 95.9 0.015 3.1E-07 55.4 5.7 55 10-66 435-489 (545)
34 PF06723 MreB_Mbl: MreB/Mbl pr 95.8 0.0053 1.1E-07 57.1 2.1 62 3-65 256-320 (326)
35 TIGR00241 CoA_E_activ CoA-subs 95.5 0.018 3.8E-07 51.6 4.4 45 17-62 202-247 (248)
36 TIGR03192 benz_CoA_bzdQ benzoy 95.5 0.027 5.8E-07 51.3 5.4 48 19-67 241-289 (293)
37 PRK04123 ribulokinase; Provisi 95.4 0.03 6.5E-07 56.1 6.2 59 5-68 429-488 (548)
38 TIGR01234 L-ribulokinase L-rib 95.4 0.033 7.3E-07 55.6 6.4 60 5-69 426-486 (536)
39 PRK00047 glpK glycerol kinase; 95.3 0.03 6.5E-07 55.4 5.7 50 17-68 403-452 (498)
40 TIGR02628 fuculo_kin_coli L-fu 95.3 0.038 8.2E-07 54.2 6.2 59 6-68 384-442 (465)
41 PLN02295 glycerol kinase 95.3 0.038 8.2E-07 54.9 6.3 51 16-68 411-461 (512)
42 TIGR01312 XylB D-xylulose kina 95.2 0.029 6.4E-07 55.1 5.3 50 17-68 390-439 (481)
43 TIGR01311 glycerol_kin glycero 95.1 0.027 5.9E-07 55.6 4.6 50 17-68 399-448 (493)
44 TIGR01315 5C_CHO_kinase FGGY-f 94.9 0.051 1.1E-06 54.4 6.2 59 5-68 434-492 (541)
45 PRK13917 plasmid segregation p 94.9 0.038 8.2E-07 52.0 4.9 50 15-68 289-338 (344)
46 TIGR03286 methan_mark_15 putat 94.8 0.034 7.3E-07 52.8 4.2 48 17-65 354-402 (404)
47 TIGR02259 benz_CoA_red_A benzo 94.8 0.067 1.4E-06 50.6 6.0 46 19-64 383-432 (432)
48 PTZ00294 glycerol kinase-like 94.8 0.065 1.4E-06 53.1 6.4 51 17-69 406-456 (504)
49 TIGR02261 benz_CoA_red_D benzo 94.7 0.082 1.8E-06 47.5 6.3 45 20-64 214-262 (262)
50 TIGR01314 gntK_FGGY gluconate 94.6 0.074 1.6E-06 52.7 6.3 50 17-68 401-450 (505)
51 PRK10939 autoinducer-2 (AI-2) 94.5 0.071 1.5E-06 53.0 6.1 50 17-68 409-458 (520)
52 PRK10331 L-fuculokinase; Provi 94.3 0.06 1.3E-06 52.9 5.0 50 17-68 389-438 (470)
53 TIGR02627 rhamnulo_kin rhamnul 94.2 0.11 2.3E-06 50.9 6.3 49 17-68 387-435 (454)
54 PRK13317 pantothenate kinase; 93.9 0.096 2.1E-06 47.7 5.0 50 16-65 221-273 (277)
55 COG1924 Activator of 2-hydroxy 93.9 0.13 2.9E-06 48.1 5.8 46 21-67 346-391 (396)
56 PRK10640 rhaB rhamnulokinase; 93.7 0.16 3.4E-06 50.0 6.4 49 17-68 375-423 (471)
57 PF11104 PilM_2: Type IV pilus 92.7 0.12 2.5E-06 48.6 3.7 39 4-42 259-299 (340)
58 KOG2517 Ribulose kinase and re 92.2 0.43 9.3E-06 46.8 6.9 52 16-69 413-464 (516)
59 cd00012 ACTIN Actin; An ubiqui 92.0 0.052 1.1E-06 51.5 0.5 64 3-66 273-347 (371)
60 COG1069 AraB Ribulose kinase [ 91.8 0.31 6.8E-06 47.7 5.5 60 4-68 421-480 (544)
61 PF00022 Actin: Actin; InterP 90.8 0.11 2.4E-06 49.6 1.3 49 18-66 311-367 (393)
62 COG1070 XylB Sugar (pentulose 89.8 0.58 1.2E-05 46.4 5.5 51 16-68 400-450 (502)
63 TIGR01175 pilM type IV pilus a 89.6 0.56 1.2E-05 44.0 5.0 28 15-42 280-307 (348)
64 COG0849 ftsA Cell division ATP 89.3 0.73 1.6E-05 44.4 5.5 65 2-67 305-381 (418)
65 COG1077 MreB Actin-like ATPase 89.0 0.23 4.9E-06 45.6 1.8 65 3-68 266-333 (342)
66 TIGR03739 PRTRC_D PRTRC system 88.6 0.93 2E-05 42.1 5.6 48 15-64 271-318 (320)
67 TIGR03281 methan_mark_12 putat 80.0 4.6 9.9E-05 37.0 5.8 50 17-69 262-314 (326)
68 PF01869 BcrAD_BadFG: BadF/Bad 78.1 5.1 0.00011 36.1 5.7 44 21-64 224-271 (271)
69 smart00268 ACTIN Actin. ACTIN 76.5 0.76 1.7E-05 43.5 -0.2 63 4-66 276-347 (373)
70 PF02801 Ketoacyl-synt_C: Beta 75.9 2.1 4.6E-05 33.4 2.2 42 2-43 29-72 (119)
71 KOG0681 Actin-related protein 75.8 2.5 5.4E-05 41.5 3.0 49 18-66 559-614 (645)
72 PTZ00281 actin; Provisional 75.4 0.54 1.2E-05 44.8 -1.6 48 19-66 296-350 (376)
73 PF06406 StbA: StbA protein; 75.3 3.8 8.2E-05 38.1 4.1 46 14-61 269-316 (318)
74 PF07820 TraC: TraC-like prote 74.1 10 0.00022 28.2 5.1 21 284-304 46-66 (92)
75 PF15290 Syntaphilin: Golgi-lo 73.9 9.7 0.00021 34.3 6.0 28 216-243 81-109 (305)
76 cd00327 cond_enzymes Condensin 73.4 16 0.00034 32.1 7.5 60 2-62 13-75 (254)
77 PF03702 UPF0075: Uncharacteri 72.3 7.5 0.00016 36.8 5.3 52 17-68 284-339 (364)
78 TIGR00555 panK_eukar pantothen 71.7 5.6 0.00012 36.3 4.1 48 15-62 228-278 (279)
79 PRK09343 prefoldin subunit bet 71.6 47 0.001 26.1 11.2 47 251-301 66-112 (121)
80 PTZ00452 actin; Provisional 71.2 1.3 2.9E-05 42.1 0.0 49 18-66 294-349 (375)
81 COG0554 GlpK Glycerol kinase [ 71.2 12 0.00026 36.5 6.4 51 17-69 402-452 (499)
82 KOG0103 Molecular chaperones H 70.9 15 0.00032 37.4 7.1 65 222-296 650-725 (727)
83 PF08841 DDR: Diol dehydratase 70.7 6.8 0.00015 35.5 4.3 51 14-64 272-329 (332)
84 COG5277 Actin and related prot 68.7 3 6.4E-05 40.7 1.8 48 18-65 363-417 (444)
85 PF07318 DUF1464: Protein of u 68.5 11 0.00025 35.1 5.5 55 15-69 258-318 (343)
86 PRK00976 hypothetical protein; 67.2 14 0.00031 34.3 5.8 50 16-68 262-313 (326)
87 PTZ00466 actin-like protein; P 66.0 1.8 3.8E-05 41.4 -0.3 49 18-66 299-354 (380)
88 PTZ00004 actin-2; Provisional 65.6 1.3 2.9E-05 42.1 -1.2 62 4-65 281-351 (378)
89 PF07520 SrfB: Virulence facto 65.5 9.9 0.00021 40.4 4.9 52 16-68 765-836 (1002)
90 PRK09585 anmK anhydro-N-acetyl 64.6 26 0.00057 33.2 7.2 50 18-68 287-340 (365)
91 PRK03011 butyrate kinase; Prov 64.6 8.8 0.00019 36.3 4.1 46 17-62 295-343 (358)
92 cd00825 decarbox_cond_enzymes 63.6 25 0.00054 32.3 6.9 64 2-66 17-108 (332)
93 PLN03170 chalcone synthase; Pr 62.7 11 0.00024 36.2 4.5 40 3-42 113-153 (401)
94 PRK07910 3-oxoacyl-(acyl carri 62.7 12 0.00026 36.2 4.7 42 2-43 290-333 (418)
95 PLN03173 chalcone synthase; Pr 62.6 14 0.0003 35.5 5.1 40 3-42 109-149 (391)
96 KOG2196 Nuclear porin [Nuclear 62.5 80 0.0017 28.0 9.1 37 252-292 215-251 (254)
97 PLN02377 3-ketoacyl-CoA syntha 62.0 12 0.00027 37.0 4.7 60 3-62 179-241 (502)
98 PTZ00280 Actin-related protein 61.9 5.8 0.00013 38.2 2.4 38 4-41 297-336 (414)
99 TIGR03150 fabF beta-ketoacyl-a 61.4 12 0.00026 35.7 4.5 41 3-43 280-322 (407)
100 PF10458 Val_tRNA-synt_C: Valy 61.2 52 0.0011 22.7 6.9 44 222-265 9-52 (66)
101 PRK09185 3-oxoacyl-(acyl carri 60.7 11 0.00024 36.0 4.1 42 3-44 265-308 (392)
102 PRK12880 3-oxoacyl-(acyl carri 60.2 22 0.00047 33.5 5.9 41 2-42 66-108 (353)
103 PTZ00009 heat shock 70 kDa pro 60.2 1.1E+02 0.0025 31.4 11.5 18 252-269 539-556 (653)
104 PRK05952 3-oxoacyl-(acyl carri 60.0 11 0.00024 36.0 3.9 41 3-43 259-301 (381)
105 COG4820 EutJ Ethanolamine util 60.0 16 0.00034 31.7 4.3 50 12-62 221-270 (277)
106 PRK07515 3-oxoacyl-(acyl carri 59.9 22 0.00049 33.6 6.0 50 3-52 102-153 (372)
107 PRK14691 3-oxoacyl-(acyl carri 59.8 12 0.00025 35.2 4.0 41 3-43 211-253 (342)
108 PRK09258 3-oxoacyl-(acyl carri 59.6 23 0.0005 32.8 6.0 41 2-42 67-109 (338)
109 PLN03172 chalcone synthase fam 59.0 17 0.00036 34.9 5.0 40 3-42 109-149 (393)
110 PRK06840 hypothetical protein; 58.7 21 0.00045 33.2 5.5 41 2-42 59-102 (339)
111 PRK07204 3-oxoacyl-(acyl carri 57.7 31 0.00068 31.8 6.5 40 3-42 59-100 (329)
112 PRK06065 acetyl-CoA acetyltran 57.3 17 0.00037 34.9 4.7 41 2-43 35-79 (392)
113 PLN03168 chalcone synthase; Pr 56.1 18 0.00038 34.7 4.6 40 3-42 108-148 (389)
114 TIGR00747 fabH 3-oxoacyl-(acyl 55.8 30 0.00066 31.7 6.1 41 2-42 57-99 (318)
115 cd00833 PKS polyketide synthas 55.3 17 0.00037 34.8 4.4 41 3-43 284-326 (421)
116 PF02543 CmcH_NodU: Carbamoylt 54.6 19 0.00041 34.1 4.5 61 3-68 153-215 (360)
117 COG4296 Uncharacterized protei 53.6 32 0.00069 27.5 4.8 22 263-284 90-112 (156)
118 PRK09116 3-oxoacyl-(acyl carri 53.4 19 0.00041 34.6 4.4 49 3-51 280-330 (405)
119 PRK06366 acetyl-CoA acetyltran 53.2 36 0.00078 32.5 6.2 63 2-66 32-100 (388)
120 PRK08170 acetyl-CoA acetyltran 50.9 34 0.00074 33.2 5.7 62 3-65 34-100 (426)
121 PLN02192 3-ketoacyl-CoA syntha 50.8 28 0.00061 34.6 5.1 39 3-42 183-223 (511)
122 PRK06954 acetyl-CoA acetyltran 50.7 28 0.0006 33.4 5.0 64 2-65 37-104 (397)
123 PRK06158 thiolase; Provisional 50.6 34 0.00073 32.6 5.6 39 2-42 34-72 (384)
124 PRK06205 acetyl-CoA acetyltran 50.5 34 0.00075 32.8 5.6 64 3-66 33-100 (404)
125 COG0332 FabH 3-oxoacyl-[acyl-c 50.4 42 0.00091 31.3 5.9 40 3-42 59-100 (323)
126 cd00751 thiolase Thiolase are 50.3 37 0.00081 32.3 5.8 39 3-42 29-70 (386)
127 PRK12879 3-oxoacyl-(acyl carri 50.3 37 0.00079 31.2 5.7 41 2-42 59-101 (325)
128 PRK07515 3-oxoacyl-(acyl carri 49.7 8 0.00017 36.6 1.1 29 3-31 276-304 (372)
129 PRK06816 3-oxoacyl-(acyl carri 49.4 44 0.00095 31.7 6.1 40 3-42 70-111 (378)
130 PRK06445 acetyl-CoA acetyltran 49.2 37 0.00081 32.5 5.6 64 2-66 38-107 (394)
131 PRK07801 acetyl-CoA acetyltran 49.1 43 0.00093 31.9 6.0 22 2-23 32-53 (382)
132 TIGR00143 hypF [NiFe] hydrogen 49.0 15 0.00033 38.1 3.1 50 16-65 657-711 (711)
133 PLN03169 chalcone synthase fam 48.5 24 0.00053 33.7 4.2 40 3-42 113-153 (391)
134 cd00827 init_cond_enzymes "ini 48.0 43 0.00093 30.7 5.7 39 3-42 55-96 (324)
135 KOG0104 Molecular chaperones G 47.8 2.1E+02 0.0045 30.0 10.5 54 248-301 774-839 (902)
136 PRK06519 3-oxoacyl-(acyl carri 47.6 42 0.00091 32.2 5.7 40 2-42 284-325 (398)
137 cd00830 KAS_III Ketoacyl-acyl 47.6 43 0.00093 30.6 5.7 41 2-42 56-98 (320)
138 PRK09352 3-oxoacyl-(acyl carri 47.5 47 0.001 30.4 5.9 41 2-42 58-100 (319)
139 PLN02854 3-ketoacyl-CoA syntha 46.8 30 0.00064 34.5 4.6 40 3-42 195-235 (521)
140 PRK08304 stage V sporulation p 45.9 38 0.00083 31.6 4.9 39 2-41 62-100 (337)
141 PRK06365 acetyl-CoA acetyltran 45.8 34 0.00074 33.2 4.8 63 2-65 43-110 (430)
142 KOG2150 CCR4-NOT transcription 45.5 1.2E+02 0.0027 30.2 8.4 23 262-288 121-143 (575)
143 cd02198 YjgH_like YjgH belongs 45.2 19 0.0004 27.7 2.4 42 2-43 40-83 (111)
144 PLN00415 3-ketoacyl-CoA syntha 44.8 39 0.00084 33.2 5.0 59 3-62 141-203 (466)
145 PF08392 FAE1_CUT1_RppA: FAE1/ 44.7 20 0.00044 32.8 2.8 40 3-42 90-130 (290)
146 COG2377 Predicted molecular ch 43.6 86 0.0019 29.7 6.8 62 7-68 280-345 (371)
147 PF11593 Med3: Mediator comple 43.2 31 0.00067 32.4 3.8 40 261-301 10-49 (379)
148 PTZ00050 3-oxoacyl-acyl carrie 43.0 27 0.00059 33.7 3.7 41 3-43 288-331 (421)
149 PRK06064 acetyl-CoA acetyltran 42.8 37 0.00081 32.3 4.6 40 2-42 28-72 (389)
150 PRK04262 hypothetical protein; 42.3 33 0.00071 32.1 4.0 39 3-42 58-99 (347)
151 PF07865 DUF1652: Protein of u 42.0 1.1E+02 0.0023 21.6 5.5 49 161-210 15-65 (69)
152 cd00828 elong_cond_enzymes "el 41.9 30 0.00065 33.0 3.8 41 3-43 279-321 (407)
153 PLN02787 3-oxoacyl-[acyl-carri 41.4 25 0.00055 35.2 3.2 41 3-43 410-452 (540)
154 PRK06157 acetyl-CoA acetyltran 41.4 42 0.0009 32.2 4.6 22 2-23 33-54 (398)
155 PF03646 FlaG: FlaG protein; 40.7 66 0.0014 24.4 4.9 45 160-212 54-99 (107)
156 cd00832 CLF Chain-length facto 40.6 51 0.0011 31.6 5.1 41 3-43 275-317 (399)
157 PRK07516 acetyl-CoA acetyltran 39.6 50 0.0011 31.5 4.9 22 2-23 28-49 (389)
158 PRK05963 3-oxoacyl-(acyl carri 39.5 72 0.0016 29.3 5.8 40 3-42 59-100 (326)
159 PRK09268 acetyl-CoA acetyltran 39.5 69 0.0015 31.1 5.8 65 3-67 38-106 (427)
160 PLN03184 chloroplast Hsp70; Pr 39.2 4.2E+02 0.009 27.5 11.7 36 252-287 566-605 (673)
161 PF02803 Thiolase_C: Thiolase, 39.1 18 0.00039 28.6 1.5 31 3-33 27-57 (123)
162 PLN02939 transferase, transfer 38.9 2.7E+02 0.0058 30.2 10.3 70 199-269 239-310 (977)
163 PRK05082 N-acetylmannosamine k 38.8 42 0.00091 30.4 4.1 49 17-65 233-287 (291)
164 smart00825 PKS_KS Beta-ketoacy 38.8 40 0.00088 32.3 4.2 40 3-42 284-325 (424)
165 PRK12578 acetyl-CoA acetyltran 38.6 48 0.001 31.5 4.6 38 2-42 27-69 (385)
166 PRK05656 acetyl-CoA acetyltran 38.0 63 0.0014 30.9 5.3 64 2-65 32-99 (393)
167 cd00826 nondecarbox_cond_enzym 37.4 49 0.0011 31.7 4.4 61 3-64 30-95 (393)
168 PRK00865 glutamate racemase; P 37.3 90 0.002 28.0 5.9 45 16-64 176-220 (261)
169 cd00834 KAS_I_II Beta-ketoacyl 37.3 1.1E+02 0.0024 28.9 6.9 19 2-20 77-95 (406)
170 PRK13310 N-acetyl-D-glucosamin 37.3 47 0.001 30.2 4.2 49 16-64 244-300 (303)
171 PRK06501 3-oxoacyl-(acyl carri 37.2 41 0.00089 32.5 3.9 41 2-42 293-335 (425)
172 PRK09604 UGMP family protein; 37.1 36 0.00077 31.8 3.4 53 16-68 253-310 (332)
173 PLN02326 3-oxoacyl-[acyl-carri 37.1 66 0.0014 30.6 5.2 41 2-42 102-143 (379)
174 CHL00203 fabH 3-oxoacyl-acyl-c 37.1 75 0.0016 29.3 5.5 40 2-42 57-98 (326)
175 PRK07314 3-oxoacyl-(acyl carri 37.1 46 0.001 31.8 4.2 40 3-42 281-322 (411)
176 KOG1394 3-oxoacyl-(acyl-carrie 36.5 22 0.00049 33.4 1.8 42 3-44 306-349 (440)
177 PF08006 DUF1700: Protein of u 36.4 1E+02 0.0022 25.9 5.7 36 259-294 24-61 (181)
178 PF06008 Laminin_I: Laminin Do 36.1 3.1E+02 0.0068 24.5 9.2 16 253-268 154-169 (264)
179 PLN02287 3-ketoacyl-CoA thiola 36.0 65 0.0014 31.6 5.1 62 3-65 78-145 (452)
180 cd04036 C2_cPLA2 C2 domain pre 35.9 1.9E+02 0.0042 21.9 8.3 62 111-177 52-115 (119)
181 KOG4001 Axonemal dynein light 35.9 2.9E+02 0.0063 23.9 8.4 47 221-270 196-242 (259)
182 COG4575 ElaB Uncharacterized c 35.7 1.9E+02 0.0041 22.1 6.3 20 223-242 11-30 (104)
183 TIGR00004 endoribonuclease L-P 35.5 30 0.00064 27.0 2.2 42 2-43 55-97 (124)
184 PRK12879 3-oxoacyl-(acyl carri 35.3 42 0.00091 30.8 3.6 36 3-41 230-265 (325)
185 PRK06840 hypothetical protein; 35.3 38 0.00082 31.5 3.2 48 3-54 242-289 (339)
186 PRK07204 3-oxoacyl-(acyl carri 35.2 27 0.00058 32.3 2.2 37 2-41 234-270 (329)
187 PRK08235 acetyl-CoA acetyltran 34.6 76 0.0016 30.4 5.2 21 3-23 33-53 (393)
188 PLN02836 3-oxoacyl-[acyl-carri 34.6 40 0.00086 32.8 3.4 41 3-43 304-346 (437)
189 PRK09557 fructokinase; Reviewe 34.5 48 0.001 30.2 3.7 49 16-64 243-299 (301)
190 PRK06289 acetyl-CoA acetyltran 34.2 68 0.0015 30.8 4.8 22 2-23 32-53 (403)
191 smart00787 Spc7 Spc7 kinetocho 33.8 3.9E+02 0.0085 24.8 10.2 39 251-289 245-286 (312)
192 KOG3091 Nuclear pore complex, 33.8 4.8E+02 0.01 25.8 11.2 66 220-291 376-445 (508)
193 PLN02939 transferase, transfer 33.7 4E+02 0.0086 28.9 10.5 82 228-310 328-412 (977)
194 PHA02414 hypothetical protein 33.7 2.1E+02 0.0045 21.5 7.4 24 227-250 7-30 (111)
195 PRK07108 acetyl-CoA acetyltran 33.4 98 0.0021 29.6 5.8 63 3-65 34-101 (392)
196 KOG0680 Actin-related protein 33.2 29 0.00063 32.2 1.9 24 18-41 318-341 (400)
197 cd00825 decarbox_cond_enzymes 33.0 33 0.00072 31.4 2.5 39 3-41 210-250 (332)
198 TIGR00748 HMG_CoA_syn_Arc hydr 33.0 70 0.0015 29.9 4.6 40 3-42 57-98 (345)
199 COG0497 RecN ATPase involved i 32.8 4.1E+02 0.0089 26.8 9.9 35 256-290 277-313 (557)
200 PRK09698 D-allose kinase; Prov 32.8 60 0.0013 29.5 4.1 50 16-65 235-295 (302)
201 PF08541 ACP_syn_III_C: 3-Oxoa 32.5 58 0.0013 23.6 3.2 31 8-41 1-31 (90)
202 PLN03171 chalcone synthase-lik 32.4 66 0.0014 30.9 4.4 40 3-42 115-155 (399)
203 PRK13881 conjugal transfer pro 32.4 2.2E+02 0.0047 27.9 7.7 41 249-289 176-217 (472)
204 KOG3133 40 kDa farnesylated pr 32.2 2.2E+02 0.0048 25.6 7.2 37 255-291 163-203 (267)
205 PRK05790 putative acyltransfer 32.2 1.1E+02 0.0023 29.3 5.8 21 3-23 33-53 (393)
206 PF14574 DUF4445: Domain of un 32.1 33 0.00071 33.2 2.2 61 4-64 314-375 (412)
207 COG1382 GimC Prefoldin, chaper 32.1 2.5E+02 0.0055 22.1 11.2 45 253-301 67-111 (119)
208 COG2433 Uncharacterized conser 32.1 5.1E+02 0.011 26.4 10.3 53 10-65 72-124 (652)
209 PHA02562 46 endonuclease subun 31.9 5.2E+02 0.011 25.7 11.4 6 20-25 29-34 (562)
210 PRK08963 fadI 3-ketoacyl-CoA t 31.7 1.2E+02 0.0026 29.4 6.1 64 3-66 36-103 (428)
211 PRK06633 acetyl-CoA acetyltran 31.5 1.1E+02 0.0023 29.4 5.7 62 3-66 34-101 (392)
212 KOG0971 Microtubule-associated 31.5 6.9E+02 0.015 26.9 11.4 73 221-299 256-343 (1243)
213 TIGR01930 AcCoA-C-Actrans acet 31.2 1.2E+02 0.0025 29.0 5.9 21 3-23 28-48 (386)
214 PRK06333 3-oxoacyl-(acyl carri 31.1 59 0.0013 31.3 3.9 41 3-43 293-335 (424)
215 KOG1760 Molecular chaperone Pr 31.1 2.7E+02 0.0058 22.0 11.0 44 195-238 12-55 (131)
216 TIGR00067 glut_race glutamate 30.6 52 0.0011 29.4 3.2 43 16-62 171-213 (251)
217 smart00825 PKS_KS Beta-ketoacy 30.5 1E+02 0.0022 29.5 5.4 24 3-26 94-120 (424)
218 TIGR03545 conserved hypothetic 30.5 4E+02 0.0087 26.9 9.6 75 226-304 190-274 (555)
219 cd00831 CHS_like Chalcone and 30.5 92 0.002 29.2 5.0 41 2-42 91-132 (361)
220 cd00327 cond_enzymes Condensin 30.3 35 0.00075 29.9 2.0 31 2-32 149-179 (254)
221 TIGR00744 ROK_glcA_fam ROK fam 30.2 64 0.0014 29.5 3.9 50 17-66 251-310 (318)
222 TIGR03722 arch_KAE1 universal 30.0 43 0.00092 31.1 2.6 32 3-34 52-83 (322)
223 PLN02644 acetyl-CoA C-acetyltr 29.9 1.1E+02 0.0024 29.3 5.5 62 2-66 31-99 (394)
224 PRK06147 3-oxoacyl-(acyl carri 29.7 1.4E+02 0.0031 27.9 6.1 41 2-42 238-280 (348)
225 KOG2411 Aspartyl-tRNA syntheta 29.7 39 0.00084 33.2 2.2 53 18-70 519-585 (628)
226 PRK03918 chromosome segregatio 29.6 6.5E+02 0.014 26.7 11.8 19 251-269 658-676 (880)
227 PRK06059 lipid-transfer protei 29.5 1.2E+02 0.0027 28.9 5.8 21 3-23 30-50 (399)
228 KOG0797 Actin-related protein 29.4 26 0.00057 34.5 1.1 52 17-68 526-591 (618)
229 PF15188 CCDC-167: Coiled-coil 29.4 2.3E+02 0.005 20.8 6.4 34 247-288 31-64 (85)
230 cd00829 SCP-x_thiolase Thiolas 29.2 93 0.002 29.2 4.9 41 2-42 22-64 (375)
231 TIGR03723 bact_gcp putative gl 29.1 72 0.0016 29.5 3.9 46 17-62 259-309 (314)
232 TIGR02845 spore_V_AD stage V s 29.0 4.8E+02 0.011 24.4 9.7 38 3-41 57-94 (327)
233 PRK07103 polyketide beta-ketoa 28.9 36 0.00079 32.7 2.0 36 2-37 285-322 (410)
234 PRK07851 acetyl-CoA acetyltran 28.7 97 0.0021 29.8 4.9 40 2-42 33-77 (406)
235 CHL00203 fabH 3-oxoacyl-acyl-c 28.4 58 0.0013 30.1 3.2 36 3-41 231-266 (326)
236 PRK09051 beta-ketothiolase; Pr 28.3 1.4E+02 0.0029 28.7 5.8 21 3-23 34-54 (394)
237 COG4020 Uncharacterized protei 28.2 1.1E+02 0.0023 27.6 4.5 36 57-97 140-175 (332)
238 PF06160 EzrA: Septation ring 28.2 6.4E+02 0.014 25.5 12.0 98 199-299 114-219 (560)
239 COG4457 SrfB Uncharacterized p 28.1 99 0.0021 31.8 4.8 52 16-68 777-848 (1014)
240 TIGR03610 RutC pyrimidine util 27.6 41 0.00089 26.6 1.8 43 2-44 57-100 (127)
241 PRK07855 lipid-transfer protei 27.3 1.5E+02 0.0032 28.3 5.8 38 2-42 30-67 (386)
242 PRK14878 UGMP family protein; 27.2 46 0.001 30.9 2.3 54 3-58 51-110 (323)
243 PF05546 She9_MDM33: She9 / Md 27.1 4.2E+02 0.0091 23.0 10.5 54 248-301 85-141 (207)
244 TIGR03286 methan_mark_15 putat 27.1 97 0.0021 29.8 4.4 53 3-64 184-236 (404)
245 PRK07738 flagellar protein Fla 27.1 1.9E+02 0.0041 22.7 5.3 44 161-212 64-108 (117)
246 PRK08256 lipid-transfer protei 27.0 1.5E+02 0.0032 28.3 5.8 22 2-23 28-49 (391)
247 KOG0679 Actin-related protein 26.8 45 0.00097 31.7 2.1 48 19-66 343-399 (426)
248 cd06155 eu_AANH_C_1 A group of 26.7 47 0.001 24.9 1.9 41 2-42 33-74 (101)
249 COG0533 QRI7 Metal-dependent p 26.6 89 0.0019 29.3 4.0 35 3-37 57-91 (342)
250 PF11314 DUF3117: Protein of u 26.6 35 0.00076 22.0 0.9 22 43-64 28-49 (51)
251 TIGR01069 mutS2 MutS2 family p 26.3 6.8E+02 0.015 26.5 10.9 15 196-210 493-507 (771)
252 COG0796 MurI Glutamate racemas 26.1 1.3E+02 0.0029 27.2 4.9 46 14-63 174-219 (269)
253 PF10168 Nup88: Nuclear pore c 26.1 6.7E+02 0.015 26.3 10.6 87 195-293 628-715 (717)
254 PRK07850 acetyl-CoA acetyltran 26.1 1E+02 0.0023 29.4 4.6 21 3-23 33-53 (387)
255 PRK08131 acetyl-CoA acetyltran 25.8 1.4E+02 0.0031 28.7 5.4 21 3-23 33-53 (401)
256 PRK06504 acetyl-CoA acetyltran 25.8 1.5E+02 0.0032 28.4 5.6 63 3-65 33-100 (390)
257 PF10020 DUF2262: Uncharacteri 25.8 1.7E+02 0.0036 23.7 5.1 26 259-284 73-108 (150)
258 PRK06064 acetyl-CoA acetyltran 25.7 47 0.001 31.7 2.1 31 3-33 263-293 (389)
259 TIGR03150 fabF beta-ketoacyl-a 25.7 2.7E+02 0.0058 26.4 7.4 18 3-20 78-95 (407)
260 cd06154 YjgF_YER057c_UK114_lik 25.5 50 0.0011 25.6 1.9 43 2-44 51-94 (119)
261 PF05957 DUF883: Bacterial pro 25.4 2.8E+02 0.006 20.4 8.0 65 201-271 6-72 (94)
262 PRK09605 bifunctional UGMP fam 25.4 1.1E+02 0.0025 30.4 4.9 65 1-70 234-303 (535)
263 TIGR00329 gcp_kae1 metallohydr 25.3 60 0.0013 29.9 2.7 54 3-58 55-114 (305)
264 PTZ00419 valyl-tRNA synthetase 25.3 2.6E+02 0.0057 30.4 7.9 57 225-289 937-993 (995)
265 COG1334 FlaG Uncharacterized f 25.1 2.3E+02 0.0049 22.3 5.4 42 161-210 67-109 (120)
266 cd06150 YjgF_YER057c_UK114_lik 25.0 51 0.0011 24.9 1.8 42 2-43 36-78 (105)
267 COG5185 HEC1 Protein involved 25.0 6.8E+02 0.015 24.7 10.6 27 216-242 301-327 (622)
268 COG3426 Butyrate kinase [Energ 24.8 1.2E+02 0.0027 27.8 4.4 50 13-62 292-344 (358)
269 cd00830 KAS_III Ketoacyl-acyl 24.6 85 0.0018 28.6 3.6 37 2-41 227-263 (320)
270 PF08735 DUF1786: Putative pyr 24.6 1.4E+02 0.0031 26.7 4.8 54 51-110 148-202 (254)
271 PF00435 Spectrin: Spectrin re 24.5 2.6E+02 0.0057 19.8 6.4 14 227-240 11-24 (105)
272 PRK08722 3-oxoacyl-(acyl carri 24.5 52 0.0011 31.8 2.2 41 3-43 283-325 (414)
273 PF05461 ApoL: Apolipoprotein 24.5 3.6E+02 0.0078 25.0 7.6 33 264-296 59-91 (313)
274 cd00834 KAS_I_II Beta-ketoacyl 24.4 48 0.001 31.5 1.9 41 3-43 280-322 (406)
275 PF03095 PTPA: Phosphotyrosyl 24.2 5.5E+02 0.012 23.7 8.7 81 215-295 10-99 (299)
276 TIGR02707 butyr_kinase butyrat 24.0 76 0.0017 29.9 3.2 45 17-61 293-340 (351)
277 PRK08313 acetyl-CoA acetyltran 23.9 1.3E+02 0.0029 28.6 4.8 22 3-24 31-52 (386)
278 KOG1029 Endocytic adaptor prot 23.8 6.7E+02 0.015 26.5 9.7 48 252-299 563-610 (1118)
279 TIGR00747 fabH 3-oxoacyl-(acyl 23.7 82 0.0018 28.8 3.3 40 3-46 224-263 (318)
280 PF06008 Laminin_I: Laminin Do 23.4 5.3E+02 0.012 23.0 9.4 48 252-299 185-245 (264)
281 PRK08868 flagellar protein Fla 23.4 2.3E+02 0.0049 23.1 5.3 43 161-211 89-132 (144)
282 COG0304 FabB 3-oxoacyl-(acyl-c 23.4 58 0.0013 31.5 2.3 42 2-43 280-323 (412)
283 PF00195 Chal_sti_synt_N: Chal 23.4 53 0.0011 28.9 1.8 61 3-63 107-170 (226)
284 cd06151 YjgF_YER057c_UK114_lik 23.2 85 0.0019 24.6 2.9 42 2-43 48-96 (126)
285 PRK09352 3-oxoacyl-(acyl carri 23.2 39 0.00084 30.9 1.0 36 3-41 224-259 (319)
286 PRK09604 UGMP family protein; 23.1 90 0.0019 29.1 3.4 57 3-61 58-120 (332)
287 cd06152 YjgF_YER057c_UK114_lik 23.0 96 0.0021 23.9 3.1 43 2-44 41-88 (114)
288 PF06075 DUF936: Plant protein 23.0 3.5E+02 0.0075 27.5 7.6 57 232-289 502-562 (579)
289 PF13779 DUF4175: Domain of un 22.9 5.6E+02 0.012 27.3 9.4 26 216-241 492-517 (820)
290 PF09321 DUF1978: Domain of un 22.9 4.2E+02 0.0091 23.6 7.2 13 163-175 26-38 (241)
291 PF04614 Pex19: Pex19 protein 22.7 4.3E+02 0.0092 23.6 7.5 38 255-292 143-184 (248)
292 PRK13848 conjugal transfer pro 22.7 2.3E+02 0.0049 21.2 4.6 20 284-303 47-66 (98)
293 PRK00409 recombination and DNA 22.5 6.8E+02 0.015 26.5 10.1 14 196-209 498-511 (782)
294 PTZ00340 O-sialoglycoprotein e 22.5 1.2E+02 0.0025 28.7 4.0 60 1-65 252-311 (345)
295 TIGR03723 bact_gcp putative gl 22.3 75 0.0016 29.4 2.7 56 3-60 56-117 (314)
296 KOG0676 Actin and related prot 22.0 73 0.0016 30.3 2.6 27 15-41 288-314 (372)
297 PF00814 Peptidase_M22: Glycop 21.6 69 0.0015 28.9 2.3 60 3-62 36-99 (268)
298 PF10087 DUF2325: Uncharacteri 21.2 86 0.0019 23.2 2.4 21 20-40 1-22 (97)
299 KOG0994 Extracellular matrix g 21.1 1.2E+03 0.026 26.2 11.2 15 255-269 1471-1485(1758)
300 PF02500 DNA_pack_N: Probable 20.8 3.8E+02 0.0083 24.5 6.7 52 223-283 83-145 (284)
301 PRK02224 chromosome segregatio 20.7 7.7E+02 0.017 26.2 10.3 13 198-210 147-159 (880)
302 TIGR02446 FadI fatty oxidation 20.6 2.2E+02 0.0048 27.7 5.7 63 3-66 38-105 (430)
303 PF08112 ATP-synt_E_2: ATP syn 20.6 2.7E+02 0.0058 18.4 4.3 16 227-242 7-22 (56)
304 PRK08452 flagellar protein Fla 20.6 2.8E+02 0.0061 22.0 5.2 44 161-212 71-115 (124)
305 PRK10719 eutA reactivating fac 20.5 2.2E+02 0.0048 28.0 5.5 38 3-40 71-110 (475)
306 PLN02943 aminoacyl-tRNA ligase 20.4 3.8E+02 0.0083 29.1 7.9 39 225-263 897-935 (958)
307 PF12128 DUF3584: Protein of u 20.4 9E+02 0.02 27.0 10.9 99 199-299 691-796 (1201)
308 TIGR01149 mtrG N5-methyltetrah 20.2 1.2E+02 0.0026 21.3 2.7 26 276-301 14-39 (70)
309 PRK08142 acetyl-CoA acetyltran 20.1 2.2E+02 0.0047 27.3 5.4 21 3-23 32-52 (388)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-64 Score=454.72 Aligned_cols=301 Identities=67% Similarity=1.052 Sum_probs=292.7
Q ss_pred CcHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCccccccee
Q 020168 1 MEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLL 80 (330)
Q Consensus 1 i~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~ 80 (330)
|.|++++|++++|+++|||.|+|||||||||.||+.|+++|+|+++++.+|||||||+|||.+|..+||. ....++++
T Consensus 346 lkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divL 423 (663)
T KOG0100|consen 346 LKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVL 423 (663)
T ss_pred hHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999999999954 56789999
Q ss_pred eeccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCe
Q 020168 81 LDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQ 160 (330)
Q Consensus 81 ~d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~ 160 (330)
.|++|.++||+..+|.+..|||+++.+|++++..|++..|+|+.+.|.+|+|++.+..+|+.+|.|.++|+|++|+|.++
T Consensus 424 LDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpq 503 (663)
T KOG0100|consen 424 LDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQ 503 (663)
T ss_pred EeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 161 INVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTI 240 (330)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l 240 (330)
|+|+|.+|.||+|+|++.++.+|++..++|+++.++|+.++|++|....++|..+|+..+++.++||.||+|.|.++..+
T Consensus 504 IEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi 583 (663)
T KOG0100|consen 504 IEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQI 583 (663)
T ss_pred EEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-hhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020168 241 KD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGA 303 (330)
Q Consensus 241 ~~-~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~~~ 303 (330)
.+ +.+...+++++++.+..+++++.+||+++++|+.++|.++.++|+..+.||..+++..+|+
T Consensus 584 ~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~ 647 (663)
T KOG0100|consen 584 GDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGG 647 (663)
T ss_pred CchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 87 7788999999999999999999999999999999999999999999999999999996644
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=4.2e-60 Score=475.71 Aligned_cols=329 Identities=73% Similarity=1.121 Sum_probs=304.2
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|+++++++.+|+.|+|||||||||+||++|+++|++.++..++|||||||+|||++|+++++...++++++.++
T Consensus 317 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~ 396 (653)
T PTZ00009 317 QPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLL 396 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEE
Confidence 57899999999999999999999999999999999999997778899999999999999999999996546788999999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+...++.+.+|||+|++||++++.+|++..|+|+.+.|.||||+.....+|..||+|.|.++++.+.+.+.|
T Consensus 397 dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 476 (653)
T PTZ00009 397 DVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQI 476 (653)
T ss_pred eecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999888889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|++|.||+|+|++.+..+++...+.+.....+|+.++++++++.+.++...|+..+++.+++|+||+|||.+|++|.
T Consensus 477 ~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~ 556 (653)
T PTZ00009 477 EVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQ 556 (653)
T ss_pred EEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999999888888766678999999999999999999999999999999999999999999997
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCC---CCC----CCCC
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGG-GADAG---ASM----DEDG 313 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~-~~~~~---~~~----~~~~ 313 (330)
++.+..++++++++++.+.+++.++||+++++++.++|++|+++|+++++||..|++..+ ||||+ ||| +|++
T Consensus 557 ~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (653)
T PTZ00009 557 DEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGA 636 (653)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCC
Confidence 656899999999999999999999999988889999999999999999999999997766 55653 333 3556
Q ss_pred CCCCCCCCCCCCcCCCC
Q 020168 314 PSAGAGSGAGPKIEEVD 330 (330)
Q Consensus 314 ~~~~~~~~~~~~~~~~~ 330 (330)
+.||+|+..||+|||||
T Consensus 637 ~~~~~~~~~~~~~~~~~ 653 (653)
T PTZ00009 637 GPAGAGASSGPTVEEVD 653 (653)
T ss_pred CCCCCCCCCCCccccCC
Confidence 66677888999999998
No 3
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.4e-52 Score=421.40 Aligned_cols=316 Identities=49% Similarity=0.764 Sum_probs=285.8
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|+++++++++|+.|+|||||||||+||+.|+++| +..+..++|||||||+|||++|+++++ +++++.++
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~~~ 424 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAG----EVSDIVLL 424 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhcc----CccceEEE
Confidence 5789999999999999999999999999999999999999 667889999999999999999999984 35789999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+.+.++.+.+|||+|+++|++++.+|.+..|+|+.+.|.||+|+.....+|..||+|.|.++|+.+.+.++|
T Consensus 425 dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i 504 (673)
T PLN03184 425 DVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 504 (673)
T ss_pred ecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999998889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|++|.||+|+|++.+..++++..+.+... .+|+.++++++++++.++..+|+..+++.+++|+||+|||.+|+.|.
T Consensus 505 ~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~ 583 (673)
T PLN03184 505 EVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK 583 (673)
T ss_pred EEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999988888754 67999999999999999999999999999999999999999999996
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCCCCCCCCC
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADAGA---SMDEDGPSAGA 318 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~~~~~~~---~~~~~~~~~~~ 318 (330)
+ +.+++++++++++.+.+++.++||+.+ +.+.+++++++|.+.+.++..+++..+|+.|+| +++++.+|...
T Consensus 584 e--~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (673)
T PLN03184 584 E--LGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSSS 658 (673)
T ss_pred H--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCCCCC
Confidence 4 888999999999999999999999986 678999999999999999999988766554433 33334455555
Q ss_pred CCCCCCCcCC
Q 020168 319 GSGAGPKIEE 328 (330)
Q Consensus 319 ~~~~~~~~~~ 328 (330)
.+++|+.|-|
T Consensus 659 ~~~~~~~~~~ 668 (673)
T PLN03184 659 SGGDGDDVID 668 (673)
T ss_pred CCCCCCceec
Confidence 5555555443
No 4
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.1e-51 Score=412.39 Aligned_cols=294 Identities=51% Similarity=0.781 Sum_probs=276.7
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|+++++++++|+.|+|||||||||+||+.|+++|++..+.+++|||+|||+|||++|+++++. ++++.+.
T Consensus 312 ~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~ 387 (653)
T PRK13411 312 EPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLL 387 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeee
Confidence 588999999999999999999999999999999999999977789999999999999999999999843 6789999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+.+.++.+.+|||+|+++|++++.+|.+..|+|+.+.|.+|+|+...+.+|..||.|.|.++|+.+.|.++|
T Consensus 388 dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i 467 (653)
T PRK13411 388 DVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQI 467 (653)
T ss_pred ecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|++|.||+|+|++.+..+|++..+.+.+. .+|+.++++++++++.++..+|+.++++.+++|+||+|||.+|+.|.
T Consensus 468 ~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~ 546 (653)
T PRK13411 468 EVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK 546 (653)
T ss_pred EEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888764 67999999999999999999999999999999999999999999997
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGA 303 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~~~ 303 (330)
+ +..++++++++++.+.+++.++||++ .+++.++|++++++|++.+.++..++++++++
T Consensus 547 ~--~~~~~~~~er~~i~~~l~~~~~wL~~-~~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 547 E--NGELISEELKQRAEQKVEQLEAALTD-PNISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5 67899999999999999999999998 45689999999999999999999999875533
No 5
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.7e-51 Score=411.47 Aligned_cols=314 Identities=52% Similarity=0.801 Sum_probs=283.7
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|+++++++.+|+.|+|||||||||.||+.|+++| +.++..++|||+|||+|||++|+++++ +++++.++
T Consensus 311 ~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~----~~~~~~~~ 385 (627)
T PRK00290 311 EPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAG----DVKDVLLL 385 (627)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcC----Cccceeee
Confidence 5789999999999999999999999999999999999999 677889999999999999999999985 36789999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+.+.++.+.+|||+|+++|++++.+|.+..|+|+.+.|.+|+|+.....+|..||+|.|.++|+.+.+.+.|
T Consensus 386 d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i 465 (627)
T PRK00290 386 DVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQI 465 (627)
T ss_pred eccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999988889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|++|.||+|+|++.+..+++...+.+... .+|+.++++++++.+.++...|+..+++.+++|+||+|+|.+|+.|.
T Consensus 466 ~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~ 544 (627)
T PRK00290 466 EVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK 544 (627)
T ss_pred EEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888765 67999999999999999999999999999999999999999999997
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGADAGASMDEDGPSAGAGSG 321 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~ 321 (330)
+ +..++++++++++.+.+++.++||+++ +.++|++++++|+++++++..|+++..++.+++++. |++. ...
T Consensus 545 ~--~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~ 615 (627)
T PRK00290 545 E--LGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGA--AAKD--DDV 615 (627)
T ss_pred H--HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--CCCC--Ccc
Confidence 4 788999999999999999999999986 789999999999999999999987744322111211 1111 133
Q ss_pred CCCCcCCCC
Q 020168 322 AGPKIEEVD 330 (330)
Q Consensus 322 ~~~~~~~~~ 330 (330)
+.+.+|||+
T Consensus 616 ~~~~~~~~~ 624 (627)
T PRK00290 616 VDAEFEEVK 624 (627)
T ss_pred ccCceeecC
Confidence 568899986
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8.4e-51 Score=407.53 Aligned_cols=292 Identities=45% Similarity=0.732 Sum_probs=275.4
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|+++|+++++|+.|+|||||||||+||+.|+++| +.++..++|||||||+|||++|+++++ .++++.++
T Consensus 313 ~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~l~ 387 (668)
T PRK13410 313 RPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLL 387 (668)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhcc----cccceeEE
Confidence 5889999999999999999999999999999999999999 677899999999999999999999984 26789999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+.+.++.+.+|||+|+++|++++.+|.+..|+|+.+.|+||||+.....+|..||+|.|+++|+.+.|.++|
T Consensus 388 Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I 467 (668)
T PRK13410 388 DVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQV 467 (668)
T ss_pred eeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|++|.||+|+|++.+..||++..+.+... .+|+.++++++++++.++...|+..+++.+++|+||+|+|.+|+.|.
T Consensus 468 ~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~ 546 (668)
T PRK13410 468 QVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLR 546 (668)
T ss_pred EEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888755 67999999999999999999999999999999999999999999997
Q ss_pred h--hhhhccCChhhHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 242 D--EKISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 242 ~--~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~-~~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
+ +.|..++++++++.+...+++.++||+++ .....+.|.++++.|+.+..+|..|+.|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 547 DAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 36888999999999999999999999985 5667778999999999999999999999
No 7
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-51 Score=394.68 Aligned_cols=298 Identities=77% Similarity=1.149 Sum_probs=287.3
Q ss_pred CcHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCccccccee
Q 020168 1 MEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLL 80 (330)
Q Consensus 1 i~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~ 80 (330)
+.|++++|+++++++.+|+.|+|||||||||++|..++++|+++.+..++||||+||+|||++||.+++.....+.++.+
T Consensus 318 ~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~l 397 (620)
T KOG0101|consen 318 LEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLL 397 (620)
T ss_pred HHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999866666689999
Q ss_pred eeccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCe
Q 020168 81 LDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQ 160 (330)
Q Consensus 81 ~d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~ 160 (330)
.|+.|.++|++..++.+.++|++++++|++++.+|+++.|+|+.+.|.||+|++....+|..+|.|.+.|+|+.|.|.+.
T Consensus 398 id~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~ 477 (620)
T KOG0101|consen 398 IDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQ 477 (620)
T ss_pred eecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 161 INVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTI 240 (330)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l 240 (330)
|+++|.+|.||+|+|++.+..+|+...+++++..+.||.++|+++....+.+..+|...+.+..++|.||+|+|.++..+
T Consensus 478 IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~ 557 (620)
T KOG0101|consen 478 IEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATV 557 (620)
T ss_pred eeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 020168 241 KDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQG 300 (330)
Q Consensus 241 ~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~ 300 (330)
+++. +.++++++.++...+++...||+.++.+.+++|++|..+|+..+.||+.+++..
T Consensus 558 ~~~~--~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 558 EDEK--GKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hhhc--cccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 8744 889999999999999999999999988889999999999999999999998875
No 8
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=7.1e-50 Score=401.66 Aligned_cols=289 Identities=55% Similarity=0.871 Sum_probs=272.7
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
++|+++|+++++++++|+.|+|||||||||+||+.|+++| +.++..++|||+|||+|||++|+++++. ++++.+.
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~ 426 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLL 426 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEE
Confidence 5789999999999999999999999999999999999999 5678899999999999999999999842 5789999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+.+.++.+.+|||+|+++|++++..|++..|+|+.+.|.||+|+...+.+|..||+|.|.++|+.+.|.++|
T Consensus 427 dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 506 (663)
T PTZ00400 427 DVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQI 506 (663)
T ss_pred eccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|.+|.||+|+|++.+..+++...+.+... .+|+.++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|.
T Consensus 507 ~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~ 585 (663)
T PTZ00400 507 EVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS 585 (663)
T ss_pred EEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888765 67999999999999999999999999999999999999999999997
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGG 301 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~ 301 (330)
+ +...+++++++++.+.+++.++||+++ +.++|++++++|++++.++..+++..+
T Consensus 586 e--~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~ 640 (663)
T PTZ00400 586 D--LKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQG 640 (663)
T ss_pred H--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5 888999999999999999999999986 689999999999999999999987644
No 9
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=2.7e-49 Score=396.03 Aligned_cols=287 Identities=53% Similarity=0.828 Sum_probs=271.1
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|+++++++.+|+.|+|||||||||.||+.|+++| +.++..++|||||||+|||++|+++++ .++++.++
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~----~~~~~~~~ 387 (621)
T CHL00094 313 IPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAG----EVKDILLL 387 (621)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcC----Cccceeee
Confidence 5789999999999999999999999999999999999999 567889999999999999999999985 35788999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+...++.+.+|||+|+++|++++.+|.+..++|+.+.+.||||++..+.+|..||+|.|.++|+.+.|.+.|
T Consensus 388 d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i 467 (621)
T CHL00094 388 DVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQI 467 (621)
T ss_pred eeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|++|.||+|+|++.+..+++...+.+.+. .+|+.++++++++++.++...|+..+++.+++|+||+|+|.+|+.|.
T Consensus 468 ~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~ 546 (621)
T CHL00094 468 EVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK 546 (621)
T ss_pred EEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999888888754 67999999999999999999999999999999999999999999997
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
+ +..++++++++++.+.++++++||+++ +.++|++++++|++.++++..+++.
T Consensus 547 ~--~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 547 E--LKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred H--HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 888999999999999999999999986 5689999999999999999998866
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=4e-49 Score=394.25 Aligned_cols=286 Identities=57% Similarity=0.885 Sum_probs=269.9
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|+++++++.+|+.|+|||||||||.||+.|+++| +.++..++|||||||+|||++|+++++. ++++.++
T Consensus 309 ~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~ 383 (595)
T TIGR02350 309 EPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLL 383 (595)
T ss_pred HHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccceee
Confidence 5789999999999999999999999999999999999999 5778999999999999999999999843 6789999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+.+.++.+.+|||+|+++|++++.+|++..|+|+.+.|.+|+|++..+.+|..||++.|+++++.+.+.++|
T Consensus 384 d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i 463 (595)
T TIGR02350 384 DVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQI 463 (595)
T ss_pred ecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+++|++|.||+|+|++.+..++++..+.+... .+|+.++++++++++.++...|+..+++.+++|+||+|||.+|+.|+
T Consensus 464 ~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~ 542 (595)
T TIGR02350 464 EVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK 542 (595)
T ss_pred EEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888765 67999999999999999999999999999999999999999999997
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMY 298 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~ 298 (330)
+ +..++++++++++.+.+++.++||+++ +..+|++++++|+++++++..+++
T Consensus 543 ~--~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 543 E--AGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 678899999999999999999999987 778999999999999999998753
No 11
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=3.7e-49 Score=394.19 Aligned_cols=291 Identities=44% Similarity=0.724 Sum_probs=271.1
Q ss_pred CcHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCccccccee
Q 020168 1 MEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLL 80 (330)
Q Consensus 1 i~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~ 80 (330)
+.+|+++|+++++++.+|+.|+|||||||||.||++|+++| +.++.+++|||||||+|||++|+++++. ++++.+
T Consensus 337 ~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l 411 (657)
T PTZ00186 337 IAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVL 411 (657)
T ss_pred HHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceEE
Confidence 36889999999999999999999999999999999999999 5667889999999999999999999853 568899
Q ss_pred eeccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCe
Q 020168 81 LDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQ 160 (330)
Q Consensus 81 ~d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~ 160 (330)
.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.+.|.++
T Consensus 412 ~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~ 491 (657)
T PTZ00186 412 LDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQ 491 (657)
T ss_pred EeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 161 INVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTI 240 (330)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l 240 (330)
|+|+|++|.||+|+|++.+..||++..+.|... ..|++++++++++...++...|...++..+++|+++.+++.++..+
T Consensus 492 I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 570 (657)
T PTZ00186 492 IEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQL 570 (657)
T ss_pred EEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999865 5799999999999999999999999999999999999999999998
Q ss_pred hhhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020168 241 KDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGG 301 (330)
Q Consensus 241 ~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~ 301 (330)
.+ . ..+++++++.+...+...++||.. .+.+.++|++++++|++.+.++..+++..+
T Consensus 571 ~~--~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 627 (657)
T PTZ00186 571 GE--W-KYVSDAEKENVKTLVAELRKAMEN-PNVAKDDLAAATDKLQKAVMECGRTEYQQA 627 (657)
T ss_pred hh--h-ccCCHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 65 2 457889999999999999999984 344679999999999999999999876544
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=6.2e-48 Score=384.24 Aligned_cols=289 Identities=39% Similarity=0.626 Sum_probs=270.4
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
++|+++|+++++++.+|+.|+|||||||||.||+.|+++| +..+..++|||+|||+|||++|++++ +.++.+++.+.
T Consensus 297 ~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~--~~~~~~~~~l~ 373 (599)
T TIGR01991 297 SICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLA--GNRIGNDLLLL 373 (599)
T ss_pred HHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhc--cccccCceEEE
Confidence 5789999999999999999999999999999999999999 56677899999999999999999999 55667789999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+++.++.+.+|||+|+++|++++..|++..|+|+.+.|.||||++....+|..||+|.|.++|+.+.|.++|
T Consensus 374 dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i 453 (599)
T TIGR01991 374 DVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARI 453 (599)
T ss_pred EeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|++|.||+|+|++.+..+|++..+.+.+. ..|+.++++++++...++..+|...++..+++|++|+|+|.++..+.
T Consensus 454 ~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (599)
T TIGR01991 454 RVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALA 532 (599)
T ss_pred EEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888765 56999999999999999999999999999999999999999999986
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
+ +...+++++++++...+++.++||+++ +.++++++.++|++.+.++..+...
T Consensus 533 ~--~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 533 A--DGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 556889999999999999999999976 6789999999999999999975554
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=7.7e-48 Score=384.38 Aligned_cols=289 Identities=38% Similarity=0.623 Sum_probs=269.9
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|+++++++.+|+.|+|||||||||.||+.|+++| +..+..++|||+|||+|||++|++++ +.+..+++.+.
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~--~~~~~~~~~l~ 389 (616)
T PRK05183 313 LACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILA--GNKPDSDMLLL 389 (616)
T ss_pred HHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhc--cccccCceEEE
Confidence 5789999999999999999999999999999999999999 55677899999999999999999998 44556789999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||++..++.+.+|||+|+++|++++..|++..|+|+.+.+.||||++..+.+|..||+|.|.++|+.+.|.++|
T Consensus 390 dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i 469 (616)
T PRK05183 390 DVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARI 469 (616)
T ss_pred eeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|++|.||+|+|++.+..+|++..+.+.+. ..|+.+++++++++..++...|...+++.+++|++|.|+|.+++.+.
T Consensus 470 ~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 548 (616)
T PRK05183 470 RVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALA 548 (616)
T ss_pred EEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888765 56999999999999999999999999999999999999999999996
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
+ ....+++++++++...+++.++||+.+ +.++|++++++|++.+.++..+..+
T Consensus 549 ~--~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 549 A--DGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMD 601 (616)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 346789999999999999999999876 7899999999999999999986554
No 14
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.1e-46 Score=371.34 Aligned_cols=278 Identities=33% Similarity=0.536 Sum_probs=256.5
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|++++ +.+|+.|+|||||||||+||+.|+++| +.++..++|||+|||+|||++|+.+++. ..++.+.
T Consensus 295 ~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~ 367 (595)
T PRK01433 295 NIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLI 367 (595)
T ss_pred HHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEE
Confidence 68899999999 689999999999999999999999999 5678889999999999999999999842 3578899
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|++||+.+.+|.+.+|||+|+++|++++..|++..|+|+.+.|.||||++....+|..||+|.|.++|+.+.|.++|
T Consensus 368 Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i 447 (595)
T PRK01433 368 DVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRA 447 (595)
T ss_pred EecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
+|+|++|.||+|+|++.+..||++..+.+... ..|+.+++++++++..++...|...++..+++|+++++++.+++.+.
T Consensus 448 ~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (595)
T PRK01433 448 EVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIA 526 (595)
T ss_pred EEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999765 56999999999999999999999999999999999999999999997
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHH
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNP 292 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~ 292 (330)
+ +...+++++++.+...+++.++||+.+ +...+++++++|+....+
T Consensus 527 ~--~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 527 E--LTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKK 572 (595)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH
Confidence 5 666789999999999999999999865 566777777777777666
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.5e-44 Score=361.18 Aligned_cols=289 Identities=44% Similarity=0.806 Sum_probs=264.5
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.+|+++|+++++++++|+.|+||||+||||+||+.|++.|+ ..+..++|||+|||+|||++|+.++ +.++++++.+.
T Consensus 313 ~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~--~~~~~~~~~~~ 389 (602)
T PF00012_consen 313 EPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILS--GSFRVKDIKII 389 (602)
T ss_dssp HHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHH--TSCSSTSSCES
T ss_pred cccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhc--ccccccccccc
Confidence 57899999999999999999999999999999999999995 7889999999999999999999999 66888999999
Q ss_pred eccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeE
Q 020168 82 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 161 (330)
Q Consensus 82 d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 161 (330)
|++|+++|+.+.++.+.+++++|+++|+..+..|.+..++|..+.+.||+|+.....++..||++.|.++++.+.+.++|
T Consensus 390 d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i 469 (602)
T PF00012_consen 390 DVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKI 469 (602)
T ss_dssp EBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEE
T ss_pred ccccccccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccce
Confidence 99999999999999999999999999999999999999999999999999999888889999999999999888998899
Q ss_pred EEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 162 NVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
.++|++|.+|+|+|++.+..++....+.+..... ++.++++.+++++.++...|+.+++..+++|+||+++|.+|+.++
T Consensus 470 ~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~ 548 (602)
T PF00012_consen 470 KVTFELDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLE 548 (602)
T ss_dssp EEEEEEETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeEEeeeeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888877644 999999999999999999999999999999999999999999998
Q ss_pred hhhhhccCChhhHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 242 DEKISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 242 ~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~-~~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
+. ...++++++ .+.+++..+||++. .+++.++|++|+++|+++.+||..|+++
T Consensus 549 ~~--~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 549 ED--KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp CC--GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hh--hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 73 566776666 88999999999985 6788999999999999999999999864
No 16
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-42 Score=327.64 Aligned_cols=288 Identities=28% Similarity=0.508 Sum_probs=249.7
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCcccccceee
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 81 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~~ 81 (330)
.|+.++|++++++.+||+.|++|||+||||.|+++|.++| ++.+++++|.|||||+|||++||++| |.|+++.+.++
T Consensus 318 ~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlS--P~frVRef~v~ 394 (727)
T KOG0103|consen 318 VPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILS--PTFRVREFSVE 394 (727)
T ss_pred HHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcC--ccccceeccee
Confidence 4789999999999999999999999999999999999999 88999999999999999999999999 99999999999
Q ss_pred eccceeeEEEEe----c-ceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeecc-ccccCCCceeeEEEecCCCCCC
Q 020168 82 DVTPLSLGLETA----G-GVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGE-RTRTRDNNLLGKFELSGIPPAP 155 (330)
Q Consensus 82 d~~~~~igi~~~----~-~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~-~~~~~~~~~ig~~~i~~i~~~~ 155 (330)
|+.||+|++.|. + +....+||+|.++|.++.++|..... |.+.+++.. ...+.....|++|.++++.+..
T Consensus 395 Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~----F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~ 470 (727)
T KOG0103|consen 395 DIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGP----FTLEAKYTKVNKLPYPKPKIEKWTITGVTPSE 470 (727)
T ss_pred cccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCc----eEEEEEeccccccCCCCCceeeEEecccccCc
Confidence 999999999986 3 45588999999999999999987654 888888876 4455566789999999888655
Q ss_pred C-CCCeEEEEEEeeCCccEEEEEEe---------c-----c--------------CCc----ceeeeecc-CCCCCCHHH
Q 020168 156 R-GVPQINVCFDIDANGILNVSAED---------K-----T--------------TGQ----KNKITITN-DKGRLSKEE 201 (330)
Q Consensus 156 ~-~~~~i~v~~~~d~~G~l~v~~~~---------~-----~--------------t~~----~~~~~i~~-~~~~ls~~e 201 (330)
. ...++.++++++.+|++.|+..- . . .++ ...+.+.. ..+.|+..+
T Consensus 471 ~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~ 550 (727)
T KOG0103|consen 471 DGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDE 550 (727)
T ss_pred cccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHH
Confidence 5 34579999999999999986421 0 0 010 01112211 235799999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHcc-CCccchHHHH
Q 020168 202 IEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDG-NQLAEADEFE 280 (330)
Q Consensus 202 i~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~-~~~a~~ee~~ 280 (330)
++..++++.+|..+|+...++.+++|+||+|||++|++|.+ .|..+++++++++|...|.++++|||+ +++.+...|.
T Consensus 551 l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~-~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~ 629 (727)
T KOG0103|consen 551 LELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSD-KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYV 629 (727)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHH
Confidence 99999999999999999999999999999999999999987 799999999999999999999999998 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020168 281 DKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 281 ~kl~~L~~~~~~i~~R~~e 299 (330)
.|+.+|+.++. ..||.+
T Consensus 630 ~kl~elk~~g~--~~r~~e 646 (727)
T KOG0103|consen 630 AKLEELKKLGD--KKRFDE 646 (727)
T ss_pred HHHHHHHhhhh--hhhhhh
Confidence 99999999996 555554
No 17
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=329.06 Aligned_cols=293 Identities=51% Similarity=0.803 Sum_probs=276.6
Q ss_pred CcHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCccccccee
Q 020168 1 MEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLL 80 (330)
Q Consensus 1 i~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~ 80 (330)
|+|++++|++|+++.+||+.|+||||.+|||+|++.+++.| +..++..+||||+||.|||+++..+++. ++++.+
T Consensus 337 i~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlL 411 (640)
T KOG0102|consen 337 IEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLL 411 (640)
T ss_pred hhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceee
Confidence 57999999999999999999999999999999999999999 7789999999999999999999999976 899999
Q ss_pred eeccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCe
Q 020168 81 LDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQ 160 (330)
Q Consensus 81 ~d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~ 160 (330)
.|++|.++||+..++.+..|+|++++||+.++..|.+..|+|+.+.|.++||++....+|+.+|+|.+.|+|+.|+|.++
T Consensus 412 LdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpq 491 (640)
T KOG0102|consen 412 LDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQ 491 (640)
T ss_pred eecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 161 INVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTI 240 (330)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l 240 (330)
|+|+|.+|.||+++|++.+..+++..++++... +.||+++++.+....+++...|..++++.+..|..+++++.....+
T Consensus 492 ieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~ 570 (640)
T KOG0102|consen 492 IEVTFDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSL 570 (640)
T ss_pred eeEEEeecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhh
Confidence 999999999999999999999999999999887 5699999999999999999999999999999999999999999988
Q ss_pred hhhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020168 241 KDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGG 301 (330)
Q Consensus 241 ~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~ 301 (330)
.. +.+..+.++..++...+....+.+..-...+-+++..+...|++...++...++..+
T Consensus 571 ~~--~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~ 629 (640)
T KOG0102|consen 571 KE--FEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNM 629 (640)
T ss_pred hh--hhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhh
Confidence 76 777888888889999999988888753333459999999999999999999988866
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=312.14 Aligned_cols=286 Identities=56% Similarity=0.865 Sum_probs=270.2
Q ss_pred CcHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCccccccee
Q 020168 1 MEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLL 80 (330)
Q Consensus 1 i~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~ 80 (330)
+.|++.+|.++++++.+|+.|+||||+||||.|++.|+++| ++++.+++||||+||+|||++|+.+++. .+++.+
T Consensus 293 ~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f-~~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll 367 (579)
T COG0443 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLL 367 (579)
T ss_pred HHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHh-CccccccCCccHHHHHHHHHHHHhhcCc----ccCceE
Confidence 36889999999999999999999999999999999999999 5889999999999999999999999954 238899
Q ss_pred eeccceeeEEEEecceeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCe
Q 020168 81 LDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQ 160 (330)
Q Consensus 81 ~d~~~~~igi~~~~~~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~ 160 (330)
.|++|+++|+...++.+..++++++++|.++...|.+..|+|..+.+++++|+.....+|..+|.|.+.++|+.+.|.++
T Consensus 368 ~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~ 447 (579)
T COG0443 368 LDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQ 447 (579)
T ss_pred EeeeeeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 161 INVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTI 240 (330)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l 240 (330)
|+++|.+|.||+++|++.+..+|+...+.+....+ |+.++++.+.+....+...|...++..+.+|..+.+++.++..|
T Consensus 448 i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l 526 (579)
T COG0443 448 IEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKAL 526 (579)
T ss_pred eEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998867 99999999999999999999999999999999999999999998
Q ss_pred hhhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 241 KDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 241 ~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
.+ .. .+++++++++...+.+.+.||+. . .++++.+.++|+....++..++.+
T Consensus 527 ~~--~~-~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 527 KE--IV-KVSEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred hh--hc-cCCHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87 33 88899999999999999999998 2 899999999999999999988764
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-35 Score=281.09 Aligned_cols=291 Identities=26% Similarity=0.435 Sum_probs=242.5
Q ss_pred CcHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhCCCCccccccee
Q 020168 1 MEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLL 80 (330)
Q Consensus 1 i~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~~~~~~~~~~~~ 80 (330)
..||++||.+++++.++|+.|+|+||+||||.||+.|.++.+..++.+++|+|||+++||+|+||.|| .+|+++++.+
T Consensus 348 ~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS--ksFKvKpf~V 425 (902)
T KOG0104|consen 348 VEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS--KSFKVKPFNV 425 (902)
T ss_pred hhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc--ccccccceee
Confidence 36999999999999999999999999999999999999999889999999999999999999999999 8999999999
Q ss_pred eeccceeeEEEEecc--------eeEEEeeCCCCCCceeEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCC
Q 020168 81 LDVTPLSLGLETAGG--------VMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIP 152 (330)
Q Consensus 81 ~d~~~~~igi~~~~~--------~~~~l~~~g~~lP~~~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~ 152 (330)
.|.++|++-+..... ....+|+++.++|.++.++|+.+.|+ |.+.+-.|.-. ..+.++.+.|+.
T Consensus 426 ~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~~velsgV~ 497 (902)
T KOG0104|consen 426 VDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLTTVELSGVK 497 (902)
T ss_pred eecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCccEEEEecch
Confidence 999999998876643 33578999999999998888877765 44444443211 234467777666
Q ss_pred CC----CC---CCCeEEEEEEeeCCccEEEEEEec---------------------cC----------------------
Q 020168 153 PA----PR---GVPQINVCFDIDANGILNVSAEDK---------------------TT---------------------- 182 (330)
Q Consensus 153 ~~----~~---~~~~i~v~~~~d~~G~l~v~~~~~---------------------~t---------------------- 182 (330)
.. +. ....|.+.|.+|.+|++.|+..+. .+
T Consensus 498 d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~e 577 (902)
T KOG0104|consen 498 DALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLE 577 (902)
T ss_pred HHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccC
Confidence 32 21 134599999999999999864210 00
Q ss_pred -Cc--c------------------------------------eeeeecc---CCCCCCHHHHHHHHHHHHHHhhhcHHHH
Q 020168 183 -GQ--K------------------------------------NKITITN---DKGRLSKEEIEKMVQEAEKYKAEDDEHK 220 (330)
Q Consensus 183 -~~--~------------------------------------~~~~i~~---~~~~ls~~ei~~~~~~~~~~~~~D~~~~ 220 (330)
++ . ..+.|.. +..-|++..+.....++..+..+++.+.
T Consensus 578 p~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~ 657 (902)
T KOG0104|consen 578 PSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKS 657 (902)
T ss_pred ccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHH
Confidence 00 0 0122222 1235899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 221 KKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 221 ~~~~a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~-~~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
+++++.|.||.|+|++.++|.++.|.++.+++++..|.+.+..+.+||++. ...++++|.+++.+|++++..+..|..+
T Consensus 658 ~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee 737 (902)
T KOG0104|consen 658 EREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEE 737 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999989999999999999999999999999985 7789999999999999999999999887
Q ss_pred cC
Q 020168 300 GG 301 (330)
Q Consensus 300 ~~ 301 (330)
+-
T Consensus 738 ~k 739 (902)
T KOG0104|consen 738 RK 739 (902)
T ss_pred HH
Confidence 54
No 20
>PRK11678 putative chaperone; Provisional
Probab=98.84 E-value=4e-09 Score=102.09 Aligned_cols=62 Identities=26% Similarity=0.284 Sum_probs=54.7
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 67 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~ 67 (330)
.+|+++|++++++ ++.|+||||+||||.|++.|++.|++. .....+|.++||.|+|++|..+
T Consensus 387 ~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~-~v~~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 387 ELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGI-PIVGGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCC-cEEeCCCcchHHHHHHHHHHhh
Confidence 5789999999987 479999999999999999999999554 4567899999999999998754
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.84 E-value=3.4e-09 Score=99.26 Aligned_cols=65 Identities=15% Similarity=0.293 Sum_probs=57.7
Q ss_pred cHHHHHHHHcC--CCCCCCC-eEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHH
Q 020168 2 EPVEKCLRDAK--MDKSSVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 67 (330)
Q Consensus 2 ~~i~~~l~~a~--l~~~dI~-~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~ 67 (330)
++|+++|++++ +..+.++ .|+|+||+|+||.|++.|++.| +.++....||++|||+|||+++..+
T Consensus 257 ~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 257 QAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 46788898886 5667888 7999999999999999999999 6778888899999999999998764
No 22
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.53 E-value=9.7e-08 Score=89.36 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=54.4
Q ss_pred cHHHHHHHHcCCC--CCCCC-eEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHH
Q 020168 2 EPVEKCLRDAKMD--KSSVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 67 (330)
Q Consensus 2 ~~i~~~l~~a~l~--~~dI~-~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~ 67 (330)
+.|.++|++++.. .+-++ .|+|+||+|+||.|++.|++.| +.++....||+++||+|||+++..+
T Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 258 EAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 4677888888644 23344 5999999999999999999999 6778888899999999999998663
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.46 E-value=2e-07 Score=87.23 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=53.4
Q ss_pred cHHHHHHHHcCCCC-CCC-C-eEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHH
Q 020168 2 EPVEKCLRDAKMDK-SSV-H-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 2 ~~i~~~l~~a~l~~-~dI-~-~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
+.|.++|++++... .++ + .|+|+||+|+||.+++.|++.| +.++....||+++||.|||+++..
T Consensus 261 ~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 261 EAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 35677788877542 355 3 6999999999999999999999 678888899999999999998654
No 24
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.39 E-value=3.3e-07 Score=85.81 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=53.7
Q ss_pred cHHHHHHHHcCCC--CCCCC-eEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHH
Q 020168 2 EPVEKCLRDAKMD--KSSVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 2 ~~i~~~l~~a~l~--~~dI~-~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a 64 (330)
+.|.++|++++.. .+.++ .|+|+||+|+||.+++.|++.| +.++....||+++||.||+...
T Consensus 260 ~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 260 EAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 4678888888644 47788 6999999999999999999999 6778888899999999999864
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=98.34 E-value=4.5e-07 Score=84.85 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=53.0
Q ss_pred cHHHHHHHHcCCC--CCCCCe-EEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHH
Q 020168 2 EPVEKCLRDAKMD--KSSVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 67 (330)
Q Consensus 2 ~~i~~~l~~a~l~--~~dI~~-V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~ 67 (330)
+.|.++|+++... .+.++. |+|+||+|++|.|++.|++.| +.++....||+++||+|||+++...
T Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 262 EAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 3567777776533 244565 999999999999999999999 5677778899999999999988653
No 26
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.28 E-value=9.3e-07 Score=80.13 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=44.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHH
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a 64 (330)
.+++.|+|+||+||||.+++.+++.| +.++....||+.++|+|||+||
T Consensus 220 ~~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 220 QDVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 47899999999999999999999999 6788888999999999999875
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.14 E-value=1.3e-06 Score=77.80 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=44.7
Q ss_pred CCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHH
Q 020168 13 MDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 62 (330)
Q Consensus 13 l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~ 62 (330)
+...+++.|+|+||+|+||.+++.|++.| +.++..+.||+++||.|||+
T Consensus 190 l~~~~~~~v~LtGG~a~ipgl~e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 190 IEGQGVKDLYLVGGACSFSGFADVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHhCCCCEEEEECchhcchhHHHHHHHHh-CCCcccCCCCCeehhheeec
Confidence 44568899999999999999999999999 77888889999999999986
No 28
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=97.83 E-value=2.7e-05 Score=75.24 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccc------------cCCchhhHHhHHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK------------SINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~------------~ln~deaVA~GAa~~a~~ 66 (330)
++...|.++++....++.|+|+||+|+||.|++.+++.|+ .++.. .-+|..|+|.|.++|+..
T Consensus 314 ~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 314 QLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 4556678889998999999999999999999999999995 33321 237999999999999764
No 29
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=97.66 E-value=3.6e-05 Score=73.11 Aligned_cols=60 Identities=23% Similarity=0.432 Sum_probs=46.8
Q ss_pred cHHH-HHHHHcCCCCCCCCe-EEEEcCCCCcHHHHHHHHHHhCCCCcccc------------CCchhhHHhHHHHH
Q 020168 2 EPVE-KCLRDAKMDKSSVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKS------------INPDEAVAYGAAVQ 63 (330)
Q Consensus 2 ~~i~-~~l~~a~l~~~dI~~-V~lvGGsSriP~V~~~l~~~f~~~~~~~~------------ln~deaVA~GAa~~ 63 (330)
..|+ +.|++++++ ++++. |+|+||+|+||.|++.+++.|+ .++... -+|.-++|.|.++|
T Consensus 298 ~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 298 EIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 4576 899999988 78888 9999999999999999999995 332111 15677788887764
No 30
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.57 E-value=0.0028 Score=54.40 Aligned_cols=48 Identities=31% Similarity=0.558 Sum_probs=42.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHH
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
.++.|.++||.++-|.+.+++.+.| +.++.+. +..|+.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVL-GRPVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHH-TSEEEEE-SSSTHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHh-CCceEeC-CCCchHHHHHHHHHHh
Confidence 4999999999999999999999999 6666444 4499999999999874
No 31
>PLN02669 xylulokinase
Probab=96.19 E-value=0.011 Score=59.22 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=42.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHH
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
..++.|.++||.|+-|.+.+++.+.| +.++. .++..|+.|+|||+.|+.
T Consensus 444 ~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~-~~~~~ea~alGAA~~A~~ 492 (556)
T PLN02669 444 VPPKRIIATGGASANQSILKLIASIF-GCDVY-TVQRPDSASLGAALRAAH 492 (556)
T ss_pred CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeE-ecCCCCchHHHHHHHHHH
Confidence 46899999999999999999999999 55664 455668999999999986
No 32
>PRK15027 xylulokinase; Provisional
Probab=96.15 E-value=0.011 Score=58.26 Aligned_cols=59 Identities=29% Similarity=0.368 Sum_probs=49.0
Q ss_pred HHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 6 KCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 6 ~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
+.|++.|. .++.|.++||.++-+...+++.+.| +.++....+.+++.|+|||+.|+.-.
T Consensus 378 ~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~ 436 (484)
T PRK15027 378 DVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAA 436 (484)
T ss_pred HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhc
Confidence 34555554 4889999999999999999999999 77776656677789999999998765
No 33
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.93 E-value=0.015 Score=55.37 Aligned_cols=55 Identities=24% Similarity=0.441 Sum_probs=47.5
Q ss_pred HcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHH
Q 020168 10 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 10 ~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
..|.....-..|+++||+||--.|-+.|.+.| +-++. +++..++.|+||||.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy-~~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVY-TIEGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeE-eecCCchhhHHHHHHHHH
Confidence 45777778899999999999999999999999 55554 458999999999999875
No 34
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=95.77 E-value=0.0053 Score=57.10 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCC-CCC--CeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHH
Q 020168 3 PVEKCLRDAKMDK-SSV--HDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 3 ~i~~~l~~a~l~~-~dI--~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~ 65 (330)
.|.++|++..=.. .|| +.|+|+||++++|-+.+.|++.+ +.++...-||..|||.||.....
T Consensus 256 ~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 256 AIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 3455555543221 244 46999999999999999999999 78899999999999999997543
No 35
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=95.50 E-value=0.018 Score=51.59 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=41.0
Q ss_pred CCC-eEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHH
Q 020168 17 SVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 62 (330)
Q Consensus 17 dI~-~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~ 62 (330)
+++ .|+|.||.++.|.+.+.+.+.+ +.++..+-+|..+.|+|||+
T Consensus 202 ~~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 202 KIEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred CCCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 566 8999999999999999999999 77788888888899999997
No 36
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=95.45 E-value=0.027 Score=51.34 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=41.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCCcc-ccCCchhhHHhHHHHHHHHH
Q 020168 19 HDVVLVGGSTRIPKVQQLLQDFFNGKELC-KSINPDEAVAYGAAVQAAIL 67 (330)
Q Consensus 19 ~~V~lvGGsSriP~V~~~l~~~f~~~~~~-~~ln~deaVA~GAa~~a~~~ 67 (330)
+.|+|.||.++.|.+++.+++.+ +.++. ...+|..+-|+|||++|...
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~~ 289 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYTL 289 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHHH
Confidence 35899999999999999999999 55655 46678999999999998653
No 37
>PRK04123 ribulokinase; Provisional
Probab=95.41 E-value=0.03 Score=56.08 Aligned_cols=59 Identities=27% Similarity=0.521 Sum_probs=47.5
Q ss_pred HHHHHHcCCCCCCCCeEEEEcCC-CCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 5 EKCLRDAKMDKSSVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 5 ~~~l~~a~l~~~dI~~V~lvGGs-SriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
-+.|++.+. .++.|.++||. ||-|...+++.+.| +.++.+ ....|+.|+|||+.|+.-.
T Consensus 429 ~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~-~~~~e~~alGaA~lA~~~~ 488 (548)
T PRK04123 429 MECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQV-VASDQCPALGAAIFAAVAA 488 (548)
T ss_pred HHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhc-CCceEe-cCccccchHHHHHHHHHHh
Confidence 345555554 48899999999 99999999999999 666643 4567899999999998755
No 38
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.39 E-value=0.033 Score=55.60 Aligned_cols=60 Identities=28% Similarity=0.445 Sum_probs=48.1
Q ss_pred HHHHHHcCCCCCCCCeEEEEcCC-CCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhC
Q 020168 5 EKCLRDAKMDKSSVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 69 (330)
Q Consensus 5 ~~~l~~a~l~~~dI~~V~lvGGs-SriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~ 69 (330)
-+.|++.|. .++.|.++||. ++-+.+.+++.+.| +.++.+.-+ .|+.|+|||+.|+.-.|
T Consensus 426 l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 426 METFTDSGV---PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 344555554 58999999999 99999999999999 677755544 57889999999987653
No 39
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.29 E-value=0.03 Score=55.39 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
.++.|.++||.+|-|...+++.+.| +.++. .....|+.|+|||+.|+.-.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~-~~~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADIL-GVPVE-RPVVAETTALGAAYLAGLAV 452 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhh-CCeeE-ecCcccchHHHHHHHHhhhc
Confidence 4789999999999999999999999 66764 44567899999999998765
No 40
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.26 E-value=0.038 Score=54.21 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 6 KCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 6 ~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
+.|++.+. ..++.|.++||.++-|...+++.+.| +.++.+. +..|+.++|||+.|+.-.
T Consensus 384 e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~-~~~e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 384 QMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANML-DIPVKVV-DDAETTVAGAAMFGFYGV 442 (465)
T ss_pred HHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhc-CCeeEec-cCCcchHHHHHHHHHHhc
Confidence 34455432 24789999999999999999999999 6777544 446888999999998765
No 41
>PLN02295 glycerol kinase
Probab=95.25 E-value=0.038 Score=54.88 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=43.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
..++.|.++||.++-|...+++.+.| +.++. ..+..|+.|+|||+.|+.-.
T Consensus 411 ~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~-~~~~~e~~alGaA~~A~~~~ 461 (512)
T PLN02295 411 KGLFLLRVDGGATANNLLMQIQADLL-GSPVV-RPADIETTALGAAYAAGLAV 461 (512)
T ss_pred CCcceEEEeccchhCHHHHHHHHHhc-CCceE-ecCccccHHHHHHHHHHhhc
Confidence 35889999999999999999999999 77774 44567899999999998765
No 42
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.21 E-value=0.029 Score=55.06 Aligned_cols=50 Identities=32% Similarity=0.510 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
.++.|.++||.+|.+.+.+++.+.| +.++.+ ....|+.|+|||+.|+.-.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~-~~~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDV-PEGEEGPALGAAILAAWAL 439 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceee-cCCCcchHHHHHHHHHHhc
Confidence 5899999999999999999999999 666644 4577899999999998765
No 43
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.07 E-value=0.027 Score=55.62 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=43.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
.++.|.++||.+|-|...+++.+.| +.++.+ .+..|+.|+|||+.|+.-.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~-~~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVR-PKVTETTALGAAYAAGLAV 448 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEe-cCCCcchHHHHHHHHHhhc
Confidence 4899999999999999999999999 777754 5667899999999998755
No 44
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=94.95 E-value=0.051 Score=54.39 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=47.7
Q ss_pred HHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 5 EKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 5 ~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
-++|++.+. .++.|.++||.++-|...+++.+.| +.++.+. +..|+.|+|||+.|+.-.
T Consensus 434 ~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~alGaA~lA~~~~ 492 (541)
T TIGR01315 434 VEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIP-YVNEAVLHGAAMLGAKAA 492 (541)
T ss_pred HHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHH-CCeeEec-ChhHHHHHHHHHHHHHhc
Confidence 345555554 4889999999999999999999999 6777544 556788999999998755
No 45
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=94.90 E-value=0.038 Score=51.99 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=43.1
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 15 KSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 15 ~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
..+++.|+|+||++++ +++.|++.|+. +...-||-.|-|+|...++..+.
T Consensus 289 ~~~~d~IiL~GGGA~l--l~~~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~ 338 (344)
T PRK13917 289 INSFDRVIVTGGGANI--FFDSLSHWYSD--VEKADESQFANVRGYYKYGELLK 338 (344)
T ss_pred cCCCCEEEEECCcHHH--HHHHHHHHcCC--eEEcCChHHHHHHHHHHHHHHHh
Confidence 4689999999999988 88999999954 34557899999999999998765
No 46
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=94.82 E-value=0.034 Score=52.82 Aligned_cols=48 Identities=33% Similarity=0.454 Sum_probs=43.1
Q ss_pred CCCe-EEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHH
Q 020168 17 SVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 17 dI~~-V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~ 65 (330)
++.. |+|+||.++.|.+.+.+++.+ +.++..+-+|.-+-|+|||++|.
T Consensus 354 ~i~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 354 DVREPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 4544 999999999999999999999 67888888999999999999884
No 47
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=94.79 E-value=0.067 Score=50.60 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=40.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhC----CCCccccCCchhhHHhHHHHHH
Q 020168 19 HDVVLVGGSTRIPKVQQLLQDFFN----GKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 19 ~~V~lvGGsSriP~V~~~l~~~f~----~~~~~~~ln~deaVA~GAa~~a 64 (330)
..|+|.||.++-|.+.+.|++.++ +.++..+-+|..+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 579999999999999999999994 3557778889999999999875
No 48
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.76 E-value=0.065 Score=53.10 Aligned_cols=51 Identities=27% Similarity=0.407 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhC
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 69 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~ 69 (330)
.++.|.++||.++-+...+++.+.| +.++.+ ....|+.|+|||+.|+.-.|
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~-~~~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADIL-GKDIVV-PEMAETTALGAALLAGLAVG 456 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHh-CCceEe-cCcccchHHHHHHHHHhhcC
Confidence 3899999999999999999999999 666643 45677899999999987653
No 49
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=94.75 E-value=0.082 Score=47.51 Aligned_cols=45 Identities=22% Similarity=0.154 Sum_probs=37.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhCCCC----ccccCCchhhHHhHHHHHH
Q 020168 20 DVVLVGGSTRIPKVQQLLQDFFNGKE----LCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 20 ~V~lvGGsSriP~V~~~l~~~f~~~~----~~~~ln~deaVA~GAa~~a 64 (330)
.|+|.||.++.|.+.+.|++.+++.+ +..+.+|..+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999985433 4445578899999999864
No 50
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.58 E-value=0.074 Score=52.70 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=43.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
.++.|.++||.++-|...+++.+.| +.++... +..|+.++|||+.|+.-.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~-~~~e~~a~GaA~la~~~~ 450 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVP-ESYESSCLGACILGLKAL 450 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEec-CCCCcchHHHHHHHHHhc
Confidence 5899999999999999999999999 6777544 455799999999998755
No 51
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.55 E-value=0.071 Score=53.05 Aligned_cols=50 Identities=26% Similarity=0.300 Sum_probs=42.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
.++.|.++||.+|-|...+++.+.| +.++.+. ...|+.++|||+.|+.-.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~alGaA~lA~~~~ 458 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVP-VVKEATALGCAIAAGVGA 458 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEe-cccCchHHHHHHHHHHHh
Confidence 4899999999999999999999999 7777544 455788999999998765
No 52
>PRK10331 L-fuculokinase; Provisional
Probab=94.34 E-value=0.06 Score=52.86 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
.++.|.++||.+|-|...+++.+.| +.++... ...|+.++|||+.|+.-.
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~-~~~e~~a~GaA~la~~~~ 438 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANML-DIPIKVL-DDAETTVAGAAMFGWYGV 438 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhc-CCeeEec-CcccchHHHHHHHHHHhc
Confidence 5899999999999999999999999 6777444 456799999999998755
No 53
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.20 E-value=0.11 Score=50.90 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
.++.|.++||.+|-|...+++.+.+ +.++.. .. .|+.|+|||+.|+.-.
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~-~~-~e~~a~GaA~~a~~~~ 435 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIA-GP-VEASTLGNIGVQLMAL 435 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEc-CC-chHHHHHHHHHHHHhc
Confidence 5889999999999999999999999 677743 33 6799999999998765
No 54
>PRK13317 pantothenate kinase; Provisional
Probab=93.87 E-value=0.096 Score=47.68 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=42.7
Q ss_pred CCCCeEEEEc-CCCCcHHHHHHHHHHhC--CCCccccCCchhhHHhHHHHHHH
Q 020168 16 SSVHDVVLVG-GSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 16 ~dI~~V~lvG-GsSriP~V~~~l~~~f~--~~~~~~~ln~deaVA~GAa~~a~ 65 (330)
..+..|+++| |-++.|.+++.+.+.+. +.++...-||.-+.|+|||+++.
T Consensus 221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 221 KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 4568999999 79999999999998873 45677778899999999999875
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=93.87 E-value=0.13 Score=48.06 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=42.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHH
Q 020168 21 VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 67 (330)
Q Consensus 21 V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~ 67 (330)
|+|+||.++.-.+.+++++.+ +.++.++-+|.-+-|+|||++|...
T Consensus 346 iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 999999999999999999999 7889999999999999999988643
No 56
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=93.66 E-value=0.16 Score=49.98 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=42.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
.++.|.++||.+|-|...+++.+.+ +.++.. .. .|+.++|||+.|+.-.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~-~~-~ea~alGaa~~a~~a~ 423 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIA-GP-VEASTLGNIGIQLMTL 423 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeee-CC-hhHHHHHHHHHHHHHc
Confidence 4889999999999999999999999 677744 33 4799999999988755
No 57
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=92.67 E-value=0.12 Score=48.58 Aligned_cols=39 Identities=21% Similarity=0.502 Sum_probs=26.7
Q ss_pred HHHHHH--HcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhC
Q 020168 4 VEKCLR--DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFN 42 (330)
Q Consensus 4 i~~~l~--~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~ 42 (330)
|.+.|+ .+...-..|+.|+|+||++++|-+.+.|++.|+
T Consensus 259 I~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 259 IRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp HHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHC
Confidence 344444 233345689999999999999999999999984
No 58
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=92.17 E-value=0.43 Score=46.83 Aligned_cols=52 Identities=29% Similarity=0.470 Sum_probs=47.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhC
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 69 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~ 69 (330)
..|+.+.+-||-|+-|.+-+.+.+.+ +.++.+..++|. |+.|||+.|+..++
T Consensus 413 ~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 413 HPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred CCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcC
Confidence 56788999999999999999999999 688888888888 99999999998874
No 59
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=92.02 E-value=0.052 Score=51.46 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=46.2
Q ss_pred HHHHHHHHcCC--CCCCCCeEEEEcCCCCcHHHHHHHHHHhCCC---------CccccCCchhhHHhHHHHHHHH
Q 020168 3 PVEKCLRDAKM--DKSSVHDVVLVGGSTRIPKVQQLLQDFFNGK---------ELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 3 ~i~~~l~~a~l--~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~---------~~~~~ln~deaVA~GAa~~a~~ 66 (330)
.|.++|..... ...-++.|+|+||+|++|-+.+.|.+.+... .+....+|..++-+||+++|..
T Consensus 273 ~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 273 AIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 34555655432 2334688999999999999999998876421 2234467888999999998865
No 60
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=91.81 E-value=0.31 Score=47.66 Aligned_cols=60 Identities=27% Similarity=0.429 Sum_probs=50.4
Q ss_pred HHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 4 VEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 4 i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
|-+++++.|+. |+.|.+.||-.+-|.+.+.+.+.. +.++... ..++++++|+|+.|+--.
T Consensus 421 Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAa 480 (544)
T COG1069 421 IIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAA 480 (544)
T ss_pred HHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHh
Confidence 55677888864 999999999999999999999999 5555433 779999999999998755
No 61
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=90.82 E-value=0.11 Score=49.60 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=37.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhCC-------CCccccC-CchhhHHhHHHHHHHH
Q 020168 18 VHDVVLVGGSTRIPKVQQLLQDFFNG-------KELCKSI-NPDEAVAYGAAVQAAI 66 (330)
Q Consensus 18 I~~V~lvGGsSriP~V~~~l~~~f~~-------~~~~~~l-n~deaVA~GAa~~a~~ 66 (330)
...|+|+||+|++|-+.+.|...+.. .++...- ++..++=+||+++|..
T Consensus 311 ~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 311 LSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp HTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred ccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 47899999999999999999876532 1223333 7888999999998865
No 62
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=89.85 E-value=0.58 Score=46.42 Aligned_cols=51 Identities=33% Similarity=0.359 Sum_probs=39.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
..++.|.++||.||-|...+++.+.| +.++. .....|+.+.|+|+.++.-.
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~-~~~~~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADAL-GLPVV-VPEVEEAGALGGAALAAAAL 450 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHc-CCeeE-ecCcccchHHHHHHHHHHHh
Confidence 45779999999999999999999999 66665 34456777777776666554
No 63
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=89.64 E-value=0.56 Score=43.97 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=25.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhC
Q 020168 15 KSSVHDVVLVGGSTRIPKVQQLLQDFFN 42 (330)
Q Consensus 15 ~~dI~~V~lvGGsSriP~V~~~l~~~f~ 42 (330)
...++.|+|+||.+++|-+.+.+++.|+
T Consensus 280 ~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 280 TNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred CcccceEEEECccccchhHHHHHHHHHC
Confidence 3469999999999999999999999994
No 64
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=89.29 E-value=0.73 Score=44.36 Aligned_cols=65 Identities=26% Similarity=0.423 Sum_probs=52.3
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCc--cc----------cCCchhhHHhHHHHHHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKEL--CK----------SINPDEAVAYGAAVQAAIL 67 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~--~~----------~ln~deaVA~GAa~~a~~~ 67 (330)
..|+..|.++++...-...|+|+||++.||-+.+..++.|+ .++ .. ..+|.-+.|.|..+|++..
T Consensus 305 ~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 305 ELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred HHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 45778899999987778999999999999999999999995 322 11 2357788999999888764
No 65
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=89.00 E-value=0.23 Score=45.62 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=52.5
Q ss_pred HHHHHHHHc--CCCCCCCCe-EEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 3 PVEKCLRDA--KMDKSSVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 3 ~i~~~l~~a--~l~~~dI~~-V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
.|+.+|+.. .|..+=++. ++|+||.+.+--+.+.|.+.. +.++...-||-.|||.|+.+....+.
T Consensus 266 air~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 266 AIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 456666664 344455566 999999999999999999998 67788888999999999999877654
No 66
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=88.57 E-value=0.93 Score=42.13 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=38.4
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHH
Q 020168 15 KSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 15 ~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a 64 (330)
..+++.|+|+||++. .+++.|++.|+...+...-||..|.|+|-..++
T Consensus 271 ~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 271 PESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred CCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 457999999999997 668999999965444455688899999977654
No 67
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=80.05 E-value=4.6 Score=37.02 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=39.8
Q ss_pred CCCeEEEEcC--CCCcH-HHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhC
Q 020168 17 SVHDVVLVGG--STRIP-KVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 69 (330)
Q Consensus 17 dI~~V~lvGG--sSriP-~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~ 69 (330)
....|+|.|- ++|+| .|++.|++.|. .+ .+.+.. ++.|+|+|+.|.-+.+
T Consensus 262 ~~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~-V~~L~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 262 KEAGVVLAGSGGTLREPINFSGKIKRVLS-CK-VLVLDS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred CCCcEEEeCcchhccCchHHHHHHHHHhC-CC-eEEecc-hhhhhhHHHHHHHHhC
Confidence 4458999986 99999 99999999994 32 334454 8999999999987763
No 68
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=78.13 E-value=5.1 Score=36.08 Aligned_cols=44 Identities=32% Similarity=0.438 Sum_probs=33.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHh----CCCCccccCCchhhHHhHHHHHH
Q 020168 21 VVLVGGSTRIPKVQQLLQDFF----NGKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 21 V~lvGGsSriP~V~~~l~~~f----~~~~~~~~ln~deaVA~GAa~~a 64 (330)
|.|+||-.+.+.+++.+.+.+ ...++.....|....|.|||++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 999999999977777664433 23344566788999999999986
No 69
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=76.54 E-value=0.76 Score=43.52 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=38.9
Q ss_pred HHHHHHHcCCC--CCCCCeEEEEcCCCCcHHHHHHHHHHhCCC-------CccccCCchhhHHhHHHHHHHH
Q 020168 4 VEKCLRDAKMD--KSSVHDVVLVGGSTRIPKVQQLLQDFFNGK-------ELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 4 i~~~l~~a~l~--~~dI~~V~lvGGsSriP~V~~~l~~~f~~~-------~~~~~ln~deaVA~GAa~~a~~ 66 (330)
|.++|.+...+ ..=.+.|+|+||+|++|-+.+.|...+... .+..+.++..++=+||+++|..
T Consensus 276 i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 276 VYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 44555554321 112366999999999999999998766211 1222234456677787776644
No 70
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=75.92 E-value=2.1 Score=33.44 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=30.3
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
..|+++|++++++++||+.|+.-|-++.. +.=.+.|.+.|+.
T Consensus 29 ~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 29 RAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 36899999999999999999999988886 4445668888854
No 71
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=75.78 E-value=2.5 Score=41.51 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhCC-------CCccccCCchhhHHhHHHHHHHH
Q 020168 18 VHDVVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 18 I~~V~lvGGsSriP~V~~~l~~~f~~-------~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
+..|+|+||.|.+|-+.+.|..-|-+ ..+.+.-||--.+=+||+..|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 88999999999999999999876532 23455668888899999988875
No 72
>PTZ00281 actin; Provisional
Probab=75.37 E-value=0.54 Score=44.78 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=34.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCC-------CccccCCchhhHHhHHHHHHHH
Q 020168 19 HDVVLVGGSTRIPKVQQLLQDFFNGK-------ELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 19 ~~V~lvGGsSriP~V~~~l~~~f~~~-------~~~~~ln~deaVA~GAa~~a~~ 66 (330)
+.|+|+||+|.||-+.+.|+..+... ++..+.++..++=+||+++|..
T Consensus 296 ~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 296 GNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred hhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 67999999999999999887765211 1222335566788888887753
No 73
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=75.35 E-value=3.8 Score=38.05 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=33.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhC--CCCccccCCchhhHHhHHH
Q 020168 14 DKSSVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAA 61 (330)
Q Consensus 14 ~~~dI~~V~lvGGsSriP~V~~~l~~~f~--~~~~~~~ln~deaVA~GAa 61 (330)
...+++.|+||||++ ..+.+.|++.|+ ...+...-||.-|-|+|=+
T Consensus 269 ~~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 269 DFSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp TS-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred hhccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 456899999999999 567889999984 2355566689999999854
No 74
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=74.08 E-value=10 Score=28.22 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 020168 284 KELEGICNPIIAKMYQGGGAD 304 (330)
Q Consensus 284 ~~L~~~~~~i~~R~~e~~~~~ 304 (330)
.+|...++.|..||+......
T Consensus 46 ~eL~~~FeeIa~RFrk~~~~~ 66 (92)
T PF07820_consen 46 AELQAAFEEIAARFRKGKKKQ 66 (92)
T ss_pred HHHHHHHHHHHHHHhcccccc
Confidence 567888888999999976443
No 75
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.93 E-value=9.7 Score=34.26 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 020168 216 DDEHKKKVEAKNALENYAYNMR-NTIKDE 243 (330)
Q Consensus 216 D~~~~~~~~a~N~LE~~i~~~r-~~l~~~ 243 (330)
......|..-.-+|.+-+++|| ++++++
T Consensus 81 ~~~l~dRetEI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 81 ENRLHDRETEIDELKSQLARMREDWIEEE 109 (305)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555667778888888 466654
No 76
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=73.37 E-value=16 Score=32.12 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=41.6
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCC--cHHHHHHHHHHhCC-CCccccCCchhhHHhHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTR--IPKVQQLLQDFFNG-KELCKSINPDEAVAYGAAV 62 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSr--iP~V~~~l~~~f~~-~~~~~~ln~deaVA~GAa~ 62 (330)
..++++|++++++++||+.|++...+.- .|..-..|...++- .....+++ ..|.+...|+
T Consensus 13 ~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~~~~~~~i~-~~C~s~~~al 75 (254)
T cd00327 13 EAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVN-QACATGLTAL 75 (254)
T ss_pred HHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCCCCCcceec-cHhHHHHHHH
Confidence 3578899999999999999987765333 68888889999854 33445555 3333444443
No 77
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=72.31 E-value=7.5 Score=36.85 Aligned_cols=52 Identities=27% Similarity=0.280 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCcccc----CCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKS----INPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~----ln~deaVA~GAa~~a~~~s 68 (330)
+++.|++.||+.+-|.+-+.|++.+++.++..+ ++++.-=|++-|++|+..-
T Consensus 284 ~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~~~ 339 (364)
T PF03702_consen 284 QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYRRL 339 (364)
T ss_dssp T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999966454332 4556556666677777644
No 78
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=71.65 E-value=5.6 Score=36.25 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCCCCeEEEEcC-CCCcHHHHHHHHHHhC--CCCccccCCchhhHHhHHHH
Q 020168 15 KSSVHDVVLVGG-STRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAAV 62 (330)
Q Consensus 15 ~~dI~~V~lvGG-sSriP~V~~~l~~~f~--~~~~~~~ln~deaVA~GAa~ 62 (330)
...+..|+++|| -+..|.+++.+...+. ..++...-|..-.+|+||++
T Consensus 228 ~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 228 RYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 356899999999 6679999999988652 45566667788899999986
No 79
>PRK09343 prefoldin subunit beta; Provisional
Probab=71.55 E-value=47 Score=26.07 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020168 251 TADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGG 301 (330)
Q Consensus 251 ~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~ 301 (330)
..++..+...|++-.+.++. ....++++.+.|+..+......+.+..
T Consensus 66 ~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 66 KVDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred hccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888875 588999999999999999999999977
No 80
>PTZ00452 actin; Provisional
Probab=71.22 E-value=1.3 Score=42.13 Aligned_cols=49 Identities=18% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhCCC-----C--ccccCCchhhHHhHHHHHHHH
Q 020168 18 VHDVVLVGGSTRIPKVQQLLQDFFNGK-----E--LCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 18 I~~V~lvGGsSriP~V~~~l~~~f~~~-----~--~~~~ln~deaVA~GAa~~a~~ 66 (330)
...|+|+||+|.+|-+.+.|...+... + +....+...++=+|++++|..
T Consensus 294 ~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 294 CRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred hccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCc
Confidence 468999999999999999998765211 1 222234455777888887753
No 81
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=71.17 E-value=12 Score=36.50 Aligned_cols=51 Identities=25% Similarity=0.351 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHhC
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 69 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s~ 69 (330)
.+..+-+=||.|+-.++-+...+.+ +.++.+..+ .|.-|+||||.|..-.|
T Consensus 402 ~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~lAGla~G 452 (499)
T COG0554 402 KLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAYLAGLAVG 452 (499)
T ss_pred CceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHHHHhhhhC
Confidence 6899999999999999999999999 677776644 78899999999988763
No 82
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=70.88 E-value=15 Score=37.40 Aligned_cols=65 Identities=34% Similarity=0.519 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHccC---Cc-----c---chHHHHHHHHHHHHHH
Q 020168 222 KVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGN---QL-----A---EADEFEDKMKELEGIC 290 (330)
Q Consensus 222 ~~~a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~---~~-----a---~~ee~~~kl~~L~~~~ 290 (330)
+-.+..+|+..|..+|..+++ +.++....+.+++.|++.. ++ + ..+++..+.++|++.+
T Consensus 650 r~k~~d~~~~~i~~~r~~~~~----------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~ 719 (727)
T KOG0103|consen 650 RPKAFDELGKKIQEIRKAIES----------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTC 719 (727)
T ss_pred hhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccc
Confidence 334555555556665555432 6778888999999999964 11 1 2389999999999999
Q ss_pred HHHHHH
Q 020168 291 NPIIAK 296 (330)
Q Consensus 291 ~~i~~R 296 (330)
.+|..+
T Consensus 720 ~~i~~~ 725 (727)
T KOG0103|consen 720 SDIISK 725 (727)
T ss_pred cccccc
Confidence 998754
No 83
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=70.66 E-value=6.8 Score=35.55 Aligned_cols=51 Identities=27% Similarity=0.318 Sum_probs=36.3
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhCCC-------CccccCCchhhHHhHHHHHH
Q 020168 14 DKSSVHDVVLVGGSTRIPKVQQLLQDFFNGK-------ELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 14 ~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~-------~~~~~ln~deaVA~GAa~~a 64 (330)
+..||+.|+|||||+.=--|-+++.+.+..- .+.-.--|..|||.|..+..
T Consensus 272 niR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 272 NIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp SCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHHH
T ss_pred CcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHhh
Confidence 5679999999999998777777777776422 34444568999999988743
No 84
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=68.68 E-value=3 Score=40.66 Aligned_cols=48 Identities=25% Similarity=0.429 Sum_probs=37.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhCC-------CCccccCCchhhHHhHHHHHHH
Q 020168 18 VHDVVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 18 I~~V~lvGGsSriP~V~~~l~~~f~~-------~~~~~~ln~deaVA~GAa~~a~ 65 (330)
...|+|+||+|.+|-+-+.|.+.+.. ..+....++...+=+||+++|.
T Consensus 363 ~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 363 YSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred hhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 57899999999999999998876532 2334455788889999999886
No 85
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=68.53 E-value=11 Score=35.14 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=39.8
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCC--ccccCCc----hhhHHhHHHHHHHHHhC
Q 020168 15 KSSVHDVVLVGGSTRIPKVQQLLQDFFNGKE--LCKSINP----DEAVAYGAAVQAAILSG 69 (330)
Q Consensus 15 ~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~--~~~~ln~----deaVA~GAa~~a~~~s~ 69 (330)
..+.+.|+|.|--+|+|-+.+.+.+.|+..- ....+.+ -...|.|||+.|.-+.|
T Consensus 258 ~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 258 VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhc
Confidence 4588999999999999999988888773210 1112222 23489999999988775
No 86
>PRK00976 hypothetical protein; Provisional
Probab=67.20 E-value=14 Score=34.34 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCCCCcH--HHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHHh
Q 020168 16 SSVHDVVLVGGSTRIP--KVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP--~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
-|.+.|+|-||-|+++ .+.+.+++.+.. . ...-..++-++|||+.|....
T Consensus 262 lDPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~ 313 (326)
T PRK00976 262 NPEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIF 313 (326)
T ss_pred cCCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHh
Confidence 3678899999999998 788889888733 2 233346899999999887664
No 87
>PTZ00466 actin-like protein; Provisional
Probab=65.97 E-value=1.8 Score=41.37 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhCCC-------CccccCCchhhHHhHHHHHHHH
Q 020168 18 VHDVVLVGGSTRIPKVQQLLQDFFNGK-------ELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 18 I~~V~lvGGsSriP~V~~~l~~~f~~~-------~~~~~ln~deaVA~GAa~~a~~ 66 (330)
...|+|+||+|.+|-+.+.|+..+... ++....++..++=+||+++|..
T Consensus 299 ~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 299 YSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASL 354 (380)
T ss_pred hhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCc
Confidence 478999999999999999998766321 1222234455677788887753
No 88
>PTZ00004 actin-2; Provisional
Probab=65.63 E-value=1.3 Score=42.09 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=39.1
Q ss_pred HHHHHHHcCCC--CCCCCeEEEEcCCCCcHHHHHHHHHHhCCC-------CccccCCchhhHHhHHHHHHH
Q 020168 4 VEKCLRDAKMD--KSSVHDVVLVGGSTRIPKVQQLLQDFFNGK-------ELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 4 i~~~l~~a~l~--~~dI~~V~lvGGsSriP~V~~~l~~~f~~~-------~~~~~ln~deaVA~GAa~~a~ 65 (330)
|.+++.++..+ ..=...|+|+||+|.+|-+.+.|...+... ++..+.++..++=+||++.|.
T Consensus 281 i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 281 TFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 44455554322 222377999999999999999998765311 122233456677778877664
No 89
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=65.53 E-value=9.9 Score=40.44 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=40.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCCCCcc--------------------ccCCchhhHHhHHHHHHHHHh
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELC--------------------KSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~--------------------~~ln~deaVA~GAa~~a~~~s 68 (330)
-+-|-++|.|=.||+|-||..+..+.+ .++. +--||...||.||.+++....
T Consensus 765 Y~CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 765 YDCDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLHGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred hCCCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecCCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 356889999999999999999998863 2222 223899999999998775543
No 90
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=64.63 E-value=26 Score=33.23 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=37.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhCCCCcccc----CCchhhHHhHHHHHHHHHh
Q 020168 18 VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKS----INPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 18 I~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~----ln~deaVA~GAa~~a~~~s 68 (330)
.+.|++.||+.+-|.+.++|++.++ .++..+ +++|--=|+.-|++|...-
T Consensus 287 ~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~l 340 (365)
T PRK09585 287 PDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRTL 340 (365)
T ss_pred CCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999984 333221 5666666777788776543
No 91
>PRK03011 butyrate kinase; Provisional
Probab=64.63 E-value=8.8 Score=36.34 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhC---CCCccccCCchhhHHhHHHH
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFN---GKELCKSINPDEAVAYGAAV 62 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~---~~~~~~~ln~deaVA~GAa~ 62 (330)
++|.|+|.||-+.-+.+++.|.+.+. ...+...-+-++|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 79999999999999999988887653 33445555667899999875
No 92
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=63.61 E-value=25 Score=32.30 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=41.4
Q ss_pred cHHHHHHHHcCCC----CCCCCeEEEEcCCCC------------------------cHHHHHHHHHHhCCCCccccCCch
Q 020168 2 EPVEKCLRDAKMD----KSSVHDVVLVGGSTR------------------------IPKVQQLLQDFFNGKELCKSINPD 53 (330)
Q Consensus 2 ~~i~~~l~~a~l~----~~dI~~V~lvGGsSr------------------------iP~V~~~l~~~f~~~~~~~~ln~d 53 (330)
...+++|+++|++ +.+|+.|++ |.++. .|.+-..|...++-.-+..+++..
T Consensus 17 ~aa~~aL~~Ag~~~~~~~~~i~~ii~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g~~~~v~~~ 95 (332)
T cd00825 17 EAAERAIADAGLSREYQKNPIVGVVV-GTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGIHGPAYDVSAA 95 (332)
T ss_pred HHHHHHHHHcCCCccccCCCCEEEEE-EeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCCCCCccccccH
Confidence 4578999999999 999999874 43322 455566777777433345566655
Q ss_pred hhHHhHHHHHHHH
Q 020168 54 EAVAYGAAVQAAI 66 (330)
Q Consensus 54 eaVA~GAa~~a~~ 66 (330)
.+...-|...|..
T Consensus 96 cas~~~al~~A~~ 108 (332)
T cd00825 96 CAGSLHALSLAAD 108 (332)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555544544
No 93
>PLN03170 chalcone synthase; Provisional
Probab=62.71 E-value=11 Score=36.21 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS-riP~V~~~l~~~f~ 42 (330)
-.+++|+++|++++|||.|+++-.+. .+|.+--.|.+.+|
T Consensus 113 Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 113 AAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 46889999999999999999887654 69999999999994
No 94
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=62.69 E-value=12 Score=36.21 Aligned_cols=42 Identities=10% Similarity=0.190 Sum_probs=37.0
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
..++++|++++++++||+.|+.-|=+|+. |.=.+.|++.|+.
T Consensus 290 ~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~Al~~~fg~ 333 (418)
T PRK07910 290 HAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGG 333 (418)
T ss_pred HHHHHHHHHhCCCHHHCCEEEcCCcCCCCCCHHHHHHHHHHhCC
Confidence 35889999999999999999999988877 7777889999964
No 95
>PLN03173 chalcone synthase; Provisional
Probab=62.57 E-value=14 Score=35.47 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS-riP~V~~~l~~~f~ 42 (330)
-++++|+++|++++|||.|+++..+. ..|.+--.|.+.+|
T Consensus 109 Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 109 AAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 46889999999999999999887555 58999999999984
No 96
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=62.53 E-value=80 Score=27.96 Aligned_cols=37 Identities=27% Similarity=0.551 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHH
Q 020168 252 ADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNP 292 (330)
Q Consensus 252 ~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~ 292 (330)
.+..++..+......||+++ ...++++++.|+++.+.
T Consensus 215 ~qi~Kilnah~~sLqwl~d~----st~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 215 IQIEKILNAHMDSLQWLDDN----STQLEKKLDKIKKLKDD 251 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhcc
Confidence 46677888888889999996 67789999999988764
No 97
>PLN02377 3-ketoacyl-CoA synthase
Probab=62.00 E-value=12 Score=37.00 Aligned_cols=60 Identities=8% Similarity=0.116 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEE-EcCCCCcHHHHHHHHHHhCCC-C-ccccCCchhhHHhHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVL-VGGSTRIPKVQQLLQDFFNGK-E-LCKSINPDEAVAYGAAV 62 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~l-vGGsSriP~V~~~l~~~f~~~-~-~~~~ln~deaVA~GAa~ 62 (330)
.++++|+++|++++|||.|++ ..+-...|.+--+|.+.+|-. . ....++..-|.+.-.++
T Consensus 179 A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL 241 (502)
T PLN02377 179 ALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAV 241 (502)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHH
Confidence 578999999999999999976 233335899999999999532 2 24445544555544444
No 98
>PTZ00280 Actin-related protein 3; Provisional
Probab=61.91 E-value=5.8 Score=38.24 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=27.7
Q ss_pred HHHHHHHcCCC--CCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 4 VEKCLRDAKMD--KSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 4 i~~~l~~a~l~--~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
|.+++.+...+ ..=.+.|+|+||+|.+|-+.+.|++.+
T Consensus 297 i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 297 VDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred HHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 44555554322 223467999999999999999999887
No 99
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=61.39 E-value=12 Score=35.68 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.++++|+++|++++|||.|++-|-+|+. +.-...+.+.|++
T Consensus 280 ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~~E~~a~~~~~~~ 322 (407)
T TIGR03150 280 AMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGD 322 (407)
T ss_pred HHHHHHHHcCCCHhHCCEEeCcCCCCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999999988876 5666778899964
No 100
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.15 E-value=52 Score=22.71 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHH
Q 020168 222 KVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAI 265 (330)
Q Consensus 222 ~~~a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~ 265 (330)
...-...++..+-.+...|..+.|....+++-.+.-+..+.++.
T Consensus 9 L~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~ 52 (66)
T PF10458_consen 9 LEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELE 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHH
Confidence 33445567778888888888888888888776655555555543
No 101
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=60.69 E-value=11 Score=35.97 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNGK 44 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~~ 44 (330)
.++++|+++|+.++||+.|.+-|=+|+. +.=...|.+.|+..
T Consensus 265 a~~~Al~~Agl~~~dId~v~~hgtgt~~~D~~E~~al~~~f~~~ 308 (392)
T PRK09185 265 AMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGDG 308 (392)
T ss_pred HHHHHHHHcCCCHHHccEEEeCCCCCcCCCHHHHHHHHHHhCCC
Confidence 5789999999999999999999999885 55557888899643
No 102
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=60.25 E-value=22 Score=33.52 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=35.1
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCC--CCcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGS--TRIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGs--SriP~V~~~l~~~f~ 42 (330)
.-++++|+++|++++|||.|+++.-+ -.+|..--.|...+|
T Consensus 66 ~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~~P~~a~~v~~~Lg 108 (353)
T PRK12880 66 HAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACYLHQLLN 108 (353)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhC
Confidence 34689999999999999999976655 479999999999984
No 103
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=60.23 E-value=1.1e+02 Score=31.40 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHc
Q 020168 252 ADKKKIEDAIEEAIQWLD 269 (330)
Q Consensus 252 ~e~~~i~~~l~e~~~Wl~ 269 (330)
+.++.+...+-+++++|+
T Consensus 539 eakN~lEs~Iy~~r~~L~ 556 (653)
T PTZ00009 539 EAKNGLENYCYSMKNTLQ 556 (653)
T ss_pred HHHhhhHHHHHHHHHHHh
Confidence 456666777777777775
No 104
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=59.98 E-value=11 Score=36.01 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.++++|+++|+.++||+.|+.-|=+|.. +.=.+.|.+.|+.
T Consensus 259 ai~~Al~~agi~p~dId~i~~hgtgt~~~D~~E~~al~~~fg~ 301 (381)
T PRK05952 259 AIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFPH 301 (381)
T ss_pred HHHHHHHHhCCCHHHeeEEEccCCCCCCCcHHHHHHHHHHcCC
Confidence 5789999999999999999999988887 5666788999953
No 105
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=59.95 E-value=16 Score=31.65 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=37.9
Q ss_pred CCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHH
Q 020168 12 KMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 62 (330)
Q Consensus 12 ~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~ 62 (330)
.+....|.-+.|+||+|.-|-+.+..++.| +..+...-.|--.--+|-|.
T Consensus 221 hie~~~i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 221 HIEGQGITDLWLVGGACMQPGVEELFEKQL-ALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred HhccCCCcceEEecccccCccHHHHHHHHh-ccccccCCCcceechhhhhh
Confidence 456667889999999999999999999999 66666655555444444443
No 106
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=59.89 E-value=22 Score=33.57 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCC--CCcHHHHHHHHHHhCCCCccccCCc
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGS--TRIPKVQQLLQDFFNGKELCKSINP 52 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGs--SriP~V~~~l~~~f~~~~~~~~ln~ 52 (330)
.++++|+++|+++++||.|++...+ ..+|..--.|...++-..+..+++.
T Consensus 102 Aa~~aL~~agl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl~~~~~~v~~ 153 (372)
T PRK07515 102 AARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGIEGFAFDMNV 153 (372)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCCCCcEEEecc
Confidence 4688999999999999998764332 3577777778888853333333443
No 107
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=59.76 E-value=12 Score=35.23 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.++++|+++|++++||+.|+.-|=+|.. +.=...|++.|+.
T Consensus 211 ai~~AL~~Agl~p~dIdyIeaHgtgT~~~D~~E~~Ai~~~fg~ 253 (342)
T PRK14691 211 AMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGE 253 (342)
T ss_pred HHHHHHHHcCCCHHHCCEEEecCCCCcCCCHHHHHHHHHHhCC
Confidence 5889999999999999999999999987 6777889999953
No 108
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=59.57 E-value=23 Score=32.85 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=33.0
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCC--CCcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGS--TRIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGs--SriP~V~~~l~~~f~ 42 (330)
..++++|+++|+.+++||.|++...+ ...|..-..|...+|
T Consensus 67 ~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~~p~~a~~v~~~lg 109 (338)
T PRK09258 67 AAGRKALAEAGIDPSDIGLLINTSVCRDYLEPATACRVHHNLG 109 (338)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHcC
Confidence 35789999999999999999865432 457888888888885
No 109
>PLN03172 chalcone synthase family protein; Provisional
Probab=59.01 E-value=17 Score=34.93 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS-riP~V~~~l~~~f~ 42 (330)
-++++|+++|++++|||.|+++..+. .+|.+--.|.+.+|
T Consensus 109 Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 109 AAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 46889999999999999999887665 69999999999994
No 110
>PRK06840 hypothetical protein; Validated
Probab=58.74 E-value=21 Score=33.25 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=31.1
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCC---CcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGST---RIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsS---riP~V~~~l~~~f~ 42 (330)
..++++|+++|++++|||.|+.++-++ ..|..-..|...+|
T Consensus 59 ~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lG 102 (339)
T PRK06840 59 AAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIG 102 (339)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhC
Confidence 357899999999999999998766322 36666666777774
No 111
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=57.70 E-value=31 Score=31.82 Aligned_cols=40 Identities=23% Similarity=0.440 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC--CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST--RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS--riP~V~~~l~~~f~ 42 (330)
.++++|+++|++++|||.|++..++. .+|..-..|...+|
T Consensus 59 Aa~~aL~~ag~~~~dId~li~~~~~~~~~~p~~a~~v~~~lg 100 (329)
T PRK07204 59 AAKKAVEDAKLTLDDIDCIICASGTIQQAIPCTASLIQEQLG 100 (329)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECCCCCCCCccHHHHHHHHhC
Confidence 46889999999999999987665432 47888888888884
No 112
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=57.28 E-value=17 Score=34.86 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=30.1
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCC----CCcHHHHHHHHHHhCC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGS----TRIPKVQQLLQDFFNG 43 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGs----SriP~V~~~l~~~f~~ 43 (330)
+.++++|+++|+++.|||.+++ |.. +-.|.+...+...++.
T Consensus 35 ~A~~~Al~dagl~~~dID~~i~-~~~~~~~~~~~~~a~~l~~~lG~ 79 (392)
T PRK06065 35 EAASKALDEAGLELKDIDCVVI-GSAPDAFDGVHMKGEYLSHGSGG 79 (392)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE-eccCCcccccccHHHHHHHHcCC
Confidence 3478999999999999999986 421 1146677778777754
No 113
>PLN03168 chalcone synthase; Provisional
Probab=56.09 E-value=18 Score=34.69 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS-riP~V~~~l~~~f~ 42 (330)
-.+++|+++|++++|||.|+++-.+. .+|.+--.|.+.+|
T Consensus 108 Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 108 AAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 46889999999999999999875433 58999999999984
No 114
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=55.82 E-value=30 Score=31.68 Aligned_cols=41 Identities=12% Similarity=0.403 Sum_probs=31.3
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCC--CcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGST--RIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsS--riP~V~~~l~~~f~ 42 (330)
..++++|+++|+++++|+.|++...+. ..|..-..|...+|
T Consensus 57 ~A~~~al~~agl~~~~Id~~i~~~~~~~~~~~~~a~~l~~~lG 99 (318)
T TIGR00747 57 EAAKRAIENAGISKDDIDLIIVATTTPDHAFPSAACMVQAYLG 99 (318)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCCCCCChHHHHHHHHhC
Confidence 357899999999999999998654322 45766677888885
No 115
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=55.28 E-value=17 Score=34.77 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.++++|+++|++++|||.|++-|-+|.. +.=.+.|...|++
T Consensus 284 a~~~al~~Agi~~~did~i~~hgtgt~~~D~~E~~al~~~f~~ 326 (421)
T cd00833 284 LIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGG 326 (421)
T ss_pred HHHHHHHHhCCCHHHCcEEEeeCCCCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999998886 4555688888854
No 116
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=54.61 E-value=19 Score=34.11 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCCCCCCe-EEEEcCCCCcHHHHHHHHHHhCCCCcccc-CCchhhHHhHHHHHHHHHh
Q 020168 3 PVEKCLRDAKMDKSSVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKS-INPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~-V~lvGGsSriP~V~~~l~~~f~~~~~~~~-ln~deaVA~GAa~~a~~~s 68 (330)
.++.++++.+ ++. |.|.||...--..-..|.+..+-+.+... .-.|+.+|+|||++++...
T Consensus 153 ~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA~~~~~~~ 215 (360)
T PF02543_consen 153 LVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAALYAWHEL 215 (360)
T ss_dssp HHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHHHHHHHHh
Confidence 3455556666 677 89999988777777777766322333322 3459999999999998655
No 117
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.62 E-value=32 Score=27.48 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=17.8
Q ss_pred HHHHHHccC-CccchHHHHHHHH
Q 020168 263 EAIQWLDGN-QLAEADEFEDKMK 284 (330)
Q Consensus 263 e~~~Wl~~~-~~a~~ee~~~kl~ 284 (330)
..++||+++ +..|.+++++|+.
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 457899985 7789999999864
No 118
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=53.40 E-value=19 Score=34.63 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCCCCccccCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNGKELCKSIN 51 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~~~~~~~ln 51 (330)
.++++|++++++++||+.|+.-|=+|.. +.=...|.+.|+...+..++.
T Consensus 280 ai~~AL~~Agi~p~dId~I~~Hgtgt~~~D~~E~~Ai~~~fg~~~pv~s~K 330 (405)
T PRK09116 280 AMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGARMPISSLK 330 (405)
T ss_pred HHHHHHHHhCCCHHHcCEEECcCccCCCCCHHHHHHHHHHhCCCCeeECcc
Confidence 5789999999999999999999977765 677778999996433333443
No 119
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=53.23 E-value=36 Score=32.53 Aligned_cols=63 Identities=21% Similarity=0.143 Sum_probs=37.2
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEE----cCCCCcHHHHHHHHHHhCCC--CccccCCchhhHHhHHHHHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLV----GGSTRIPKVQQLLQDFFNGK--ELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lv----GGsSriP~V~~~l~~~f~~~--~~~~~ln~deaVA~GAa~~a~~ 66 (330)
+.+..+|+++|++++|||.|++- +|....| -..+....|-. .+..+++...+...-|...|+.
T Consensus 32 ~a~~~al~dagi~~~dID~vi~g~~~~~~~~~~~--a~~~~~~~Gl~~~~p~~~v~~~caSg~~av~~Aa~ 100 (388)
T PRK06366 32 AAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNP--AGQAAYHAGLPFGVTKYTVNVVCASGMLAVESAAR 100 (388)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEecCCCCccCcH--HHHHHHHCCCCCCCcceeeechhhHHHHHHHHHHH
Confidence 35788999999999999999852 2322222 23355555322 2556677544444444444443
No 120
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=50.85 E-value=34 Score=33.16 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC---CcHHHHHHHHHHhCC--CCccccCCchhhHHhHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST---RIPKVQQLLQDFFNG--KELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS---riP~V~~~l~~~f~~--~~~~~~ln~deaVA~GAa~~a~ 65 (330)
.++.+|+++|++++|||.|++ |-++ ..+.+-..+...+|- ..+..+++...+...-|...|+
T Consensus 34 A~~~Al~dAgl~~~dID~vi~-g~~~~~~~~~~~a~~v~~~lGl~~~~p~~~v~~~CaSg~~al~~A~ 100 (426)
T PRK08170 34 AGRALLNRQPFAPDDLDEVIL-GCAMPSPDEANIARVVALRLGCGEKVPAWTVQRNCASGMQALDSAA 100 (426)
T ss_pred HHHHHHHHcCCCHHHCCEEEE-EeccCCCCcChHHHHHHHHhCcCCCceeeeccchhhHHHHHHHHHH
Confidence 478899999999999999984 3221 233443456666642 1245566655333333333343
No 121
>PLN02192 3-ketoacyl-CoA synthase
Probab=50.77 E-value=28 Score=34.58 Aligned_cols=39 Identities=8% Similarity=0.282 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC--CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST--RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS--riP~V~~~l~~~f~ 42 (330)
.++++|+++|++++|||.|++. .|. ..|.+-.+|.+.+|
T Consensus 183 Aa~~aL~kaGi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 183 AIDQLLAKTSVKPKDIGILIVN-CSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHcCCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhC
Confidence 4688999999999999988766 444 47999999999995
No 122
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=50.65 E-value=28 Score=33.43 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=35.0
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEE----cCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLV----GGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lv----GGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~ 65 (330)
..++.+|+++|+++++||.|++- .|.+..+..+..+.--++...+..++|...+...=|...|+
T Consensus 37 ~a~~~aL~~Agi~~~dID~vi~G~~~~~~~~~~~~~~~~l~ag~~~~~p~~~V~~aCaSG~~Av~~A~ 104 (397)
T PRK06954 37 AAIAAAVERAGLKPEQIDEVVMGCVLPAGQGQAPARQAALGAGLPLSVGCTTVNKMCGSGMRAAMFAH 104 (397)
T ss_pred HHHHHHHHHcCCCHHHcCEEEEEecCCCccchHHHHHHHHcCCCCCCccEeeccccchHHHHHHHHHH
Confidence 35789999999999999998853 12222233333232112112344556655544444444444
No 123
>PRK06158 thiolase; Provisional
Probab=50.62 E-value=34 Score=32.63 Aligned_cols=39 Identities=10% Similarity=0.226 Sum_probs=27.8
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~ 42 (330)
+.+.++|+++|++++|||.|++.......|. ..|.+.+|
T Consensus 34 eA~~~Al~dAgl~~~dID~iv~~~~~~~~~~--~~la~~lG 72 (384)
T PRK06158 34 QAAHRALADAGLTMADVDGLFTASPDDALWG--LSVAEYLG 72 (384)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEecCCCCCcH--HHHHHHcC
Confidence 3468899999999999999986443345554 24666663
No 124
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=50.53 E-value=34 Score=32.85 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCCCCCCeEEEE--cCCCCcHHHHHHHHHHhCCC--CccccCCchhhHHhHHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLV--GGSTRIPKVQQLLQDFFNGK--ELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lv--GGsSriP~V~~~l~~~f~~~--~~~~~ln~deaVA~GAa~~a~~ 66 (330)
.++++|++++++++|||.|++- -+....|.+-..+....|-. .+..++|...+...-|...|+.
T Consensus 33 A~~~AL~~agl~~~dID~vv~g~~~~~~~~~~~a~~va~~~Gl~~~~p~~~V~~~CaSg~~Al~~A~~ 100 (404)
T PRK06205 33 VIRALVERTGIDPARIDDVIFGQGYPNGEAPAIGRVAALDAGLPVTVPGMQLDRRCGSGLQAVITAAM 100 (404)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCCceeehhhhhhHHHHHHHHHHH
Confidence 5789999999999999998742 11112355555666666321 2344555544444434444443
No 125
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=50.38 E-value=42 Score=31.29 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCC--CCcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGS--TRIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGs--SriP~V~~~l~~~f~ 42 (330)
..+++|+++|++++|||-|++.-=+ -.+|..--.|+..+|
T Consensus 59 Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG 100 (323)
T COG0332 59 AARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLG 100 (323)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhC
Confidence 4689999999999999999998866 456999999999995
No 126
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=50.34 E-value=37 Score=32.30 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEc---CCCCcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVG---GSTRIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvG---GsSriP~V~~~l~~~f~ 42 (330)
-++++|+++|++++|||.|++ | +....|..-..+...+|
T Consensus 29 A~~~AL~dAgl~~~dID~vi~-~~~~~~~~~~~~a~~v~~~lG 70 (386)
T cd00751 29 VIKALLERAGLDPEEVDDVIM-GNVLQAGEGQNPARQAALLAG 70 (386)
T ss_pred HHHHHHHhcCCCHHHCCEEEE-EeccCCCCCChHHHHHHHHcC
Confidence 468899999999999999985 3 11123554445666664
No 127
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=50.30 E-value=37 Score=31.22 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=32.8
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCC--CCcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGS--TRIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGs--SriP~V~~~l~~~f~ 42 (330)
..++++|+++|+++++||.|+....+ ...|..-..|...++
T Consensus 59 ~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~a~~l~~~lg 101 (325)
T PRK12879 59 KAAERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQARLG 101 (325)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHhC
Confidence 35789999999999999999865532 357888888888885
No 128
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=49.70 E-value=8 Score=36.64 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIP 31 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP 31 (330)
.|+++|+++|++++|||.+++-+++.+|-
T Consensus 276 ~i~~~L~~~gl~~~dId~~~~Hq~~~~~~ 304 (372)
T PRK07515 276 HIVEHLAENGLTPADVKRFWLHQANINMN 304 (372)
T ss_pred HHHHHHHHcCCCHHHCCEEEECCCCHHHH
Confidence 57899999999999999999999999864
No 129
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=49.42 E-value=44 Score=31.73 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCC--CCcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGS--TRIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGs--SriP~V~~~l~~~f~ 42 (330)
.++++|+++|++++|||.|++.-.+ ..+|..-..|...++
T Consensus 70 A~~~aL~~agi~~~dId~li~~s~~~~~~~p~~a~~v~~~Lg 111 (378)
T PRK06816 70 AIRDLLDDAGFSLGDIELLACGTSQPDQLMPGHASMVHGELG 111 (378)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEECCCCcCChHHHHHHHhhCC
Confidence 4788999999999999998875433 246776566777774
No 130
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=49.21 E-value=37 Score=32.46 Aligned_cols=64 Identities=6% Similarity=0.093 Sum_probs=36.5
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCC------CcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGST------RIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsS------riP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
+.++++|+++|++++|||.|++ |-+. -.+...-.+...++...+..+++...+....|...|+.
T Consensus 38 ~a~~~AL~~agl~~~dID~vi~-g~~~~~~~~~~~~~~~~~l~a~~~~~~p~~~V~~~CaSg~~ai~~A~~ 107 (394)
T PRK06445 38 MLINRLIEKTGIKPEEIDDIIT-GCALQVGENWLYGGRHPIFLARLPYNIPAMAVDRQCASSLTTVSIGAM 107 (394)
T ss_pred HHHHHHHHHcCCCHHHCCeeEE-EeecCCCcccccHHHHHHHHcCCCCCCcchhhhhhhHHHHHHHHHHHH
Confidence 3578999999999999998874 3221 12232223333443223445566555555555555543
No 131
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=49.09 E-value=43 Score=31.87 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.3
Q ss_pred cHHHHHHHHcCCCCCCCCeEEE
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~l 23 (330)
+.++.+|+++|++++|||.|++
T Consensus 32 ~a~~~al~dagl~~~~ID~vv~ 53 (382)
T PRK07801 32 HVLKGLVDRTGIDPAAVDDVIF 53 (382)
T ss_pred HHHHHHHHHcCCCHHHcCEEEE
Confidence 3568899999999999999986
No 132
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=49.04 E-value=15 Score=38.10 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=38.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhC--CCCcccc---CCchhhHHhHHHHHHH
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKS---INPDEAVAYGAAVQAA 65 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~--~~~~~~~---ln~deaVA~GAa~~a~ 65 (330)
..++.|.|.||..+-..+++.|.+.+. +.++..+ .-.|.++++|.|+.|+
T Consensus 657 ~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 657 FGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred cCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 358889999999999999999988763 2233222 2459999999998774
No 133
>PLN03169 chalcone synthase family protein; Provisional
Probab=48.47 E-value=24 Score=33.75 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCC-CCcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGS-TRIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGs-SriP~V~~~l~~~f~ 42 (330)
-++++|+++|++++|||.|+++-.+ ..+|..--.|...+|
T Consensus 113 Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~l~~~LG 153 (391)
T PLN03169 113 ASLACIKEWGRPVSDITHLVYVSSSEARLPGGDLYLAKQLG 153 (391)
T ss_pred HHHHHHHHhCCCHHHCCEEEEECcCCCCCCcHHHHHHHHhC
Confidence 4688999999999999999877532 268988888888884
No 134
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=47.96 E-value=43 Score=30.65 Aligned_cols=39 Identities=10% Similarity=0.254 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCC---CCcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGS---TRIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGs---SriP~V~~~l~~~f~ 42 (330)
.++++|+++|+++++||.|++ |.+ ...|.+-..|...+|
T Consensus 55 a~~~aL~~ag~~~~~Id~li~-~~~~~~~~~~~~~~~i~~~lg 96 (324)
T cd00827 55 AARRALERAGIDPDDIGLLIV-ATESPIDKGKSAATYLAELLG 96 (324)
T ss_pred HHHHHHHHcCCCHHHCCEEEE-EcCCCCCCCccHHHHHHHHcC
Confidence 578999999999999999886 333 225667777888884
No 135
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=47.81 E-value=2.1e+02 Score=29.98 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=44.8
Q ss_pred cCChhhHHHHHHHHHHHHHHHccC------------CccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020168 248 KLPTADKKKIEDAIEEAIQWLDGN------------QLAEADEFEDKMKELEGICNPIIAKMYQGG 301 (330)
Q Consensus 248 ~~~~~e~~~i~~~l~e~~~Wl~~~------------~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~ 301 (330)
.++..++..|.+.+.+...|+.+. ...+.+++..|...|.....-...|+.-+-
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~~ 839 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIRK 839 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhccC
Confidence 356678899999999999999863 123778999999999999999999988765
No 136
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=47.58 E-value=42 Score=32.24 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=33.6
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~ 42 (330)
..|+++|+++|+ ++|||+|..-|-+|.. +.=...|++.|+
T Consensus 284 ~am~~AL~~Agl-~~~IdyI~ahgtgT~~~D~~E~~Ai~~~f~ 325 (398)
T PRK06519 284 ASLERLLKPAGG-LAAPTAVISGATGAHPATAEEKAALEAALA 325 (398)
T ss_pred HHHHHHHHHCCC-cccCCEEEeCCCCCCCccHHHHHHHHHHcC
Confidence 368999999999 7999999999999887 444567888894
No 137
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=47.55 E-value=43 Score=30.57 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=31.4
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCC--CcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGST--RIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsS--riP~V~~~l~~~f~ 42 (330)
..++++|+++|+++++||.|+....+. ..|..-..|...++
T Consensus 56 ~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~~~~l~~~lg 98 (320)
T cd00830 56 EAAKKALEDAGIDADDIDLIIVATSTPDYLFPATACLVQARLG 98 (320)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhC
Confidence 356899999999999999997644321 25777788888885
No 138
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=47.47 E-value=47 Score=30.41 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=31.2
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCC--CcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGST--RIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsS--riP~V~~~l~~~f~ 42 (330)
..++++|+++|+.+++||.|++..++. ..|..-..|...+|
T Consensus 58 ~A~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~~~i~~~lG 100 (319)
T PRK09352 58 EAAKKALEAAGIDPEDIDLIIVATTTPDYAFPSTACLVQARLG 100 (319)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHHhC
Confidence 357899999999999999988643321 26777777888885
No 139
>PLN02854 3-ketoacyl-CoA synthase
Probab=46.81 E-value=30 Score=34.51 Aligned_cols=40 Identities=3% Similarity=0.195 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCCCCCCeEEEE-cCCCCcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLV-GGSTRIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lv-GGsSriP~V~~~l~~~f~ 42 (330)
.++++|+++|++++|||.|++. .+-+..|.+--+|.+.+|
T Consensus 195 ~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 195 ALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 5789999999999999999862 222247999999999995
No 140
>PRK08304 stage V sporulation protein AD; Validated
Probab=45.86 E-value=38 Score=31.63 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=26.7
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
+.++++|+++|++++|||.++ +|-...-|..-..+.+.+
T Consensus 62 eAa~~ALekAGI~~~DID~lI-~Gdll~Q~~sAs~vA~~L 100 (337)
T PRK08304 62 DAIQQALQKANLKKSDIDYLL-AGDLLNQIISANFAAREL 100 (337)
T ss_pred HHHHHHHHHcCCCHHHCCEEE-EECCCCCcchHHHHHHHh
Confidence 357899999999999999988 443322344444555556
No 141
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=45.83 E-value=34 Score=33.22 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=35.5
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcH----HHHHHHHHHhCC-CCccccCCchhhHHhHHHHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIP----KVQQLLQDFFNG-KELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP----~V~~~l~~~f~~-~~~~~~ln~deaVA~GAa~~a~ 65 (330)
+.+..+|+++|+++.|||.|+ +|..+..+ ..+..+....|- ..+..+++...+....|...|+
T Consensus 43 eA~~~Al~dagl~~~dID~vv-~~~~~~~~~g~~~~~~~~~~~lGl~~~~~~~v~~~~aSg~~ai~~A~ 110 (430)
T PRK06365 43 KAFDYAMNDAGLTLADIDGSV-ASYFSDHFQRQLLAGIMVQDYLGLVPKPSKRIEGGGATGGLAFQAGY 110 (430)
T ss_pred HHHHHHHHHcCCCHHHcCEEE-EecccccccccchhhHHHHHhcCCCCCceEEEeCCcHHHHHHHHHHH
Confidence 346789999999999999964 45433222 234445556531 2344455544444444444444
No 142
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=45.52 E-value=1.2e+02 Score=30.25 Aligned_cols=23 Identities=22% Similarity=0.716 Sum_probs=14.2
Q ss_pred HHHHHHHccCCccchHHHHHHHHHHHH
Q 020168 262 EEAIQWLDGNQLAEADEFEDKMKELEG 288 (330)
Q Consensus 262 ~e~~~Wl~~~~~a~~ee~~~kl~~L~~ 288 (330)
.+..+||.+ ..++++.+++.++.
T Consensus 121 ~d~~~wi~~----~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 121 RDTMDWISN----QIDELERQVDSFEA 143 (575)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHH
Confidence 466677766 35666666665554
No 143
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=45.24 E-value=19 Score=27.66 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=33.5
Q ss_pred cHHHHHHHHcCCCCCCCCeE--EEEcCCCCcHHHHHHHHHHhCC
Q 020168 2 EPVEKCLRDAKMDKSSVHDV--VLVGGSTRIPKVQQLLQDFFNG 43 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V--~lvGGsSriP~V~~~l~~~f~~ 43 (330)
+-|+.+|+.+|.+++||-.+ .|+.-....+.+.+...++|++
T Consensus 40 ~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~~ 83 (111)
T cd02198 40 QNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFKE 83 (111)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcCC
Confidence 35788999999999998664 5565457899999999999964
No 144
>PLN00415 3-ketoacyl-CoA synthase
Probab=44.77 E-value=39 Score=33.16 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC--CcHHHHHHHHHHhCCC-C-ccccCCchhhHHhHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST--RIPKVQQLLQDFFNGK-E-LCKSINPDEAVAYGAAV 62 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS--riP~V~~~l~~~f~~~-~-~~~~ln~deaVA~GAa~ 62 (330)
.++++|+++|++++|||.|++. ++. ..|.+--.|...+|-. . ....++..-|.+.-.++
T Consensus 141 A~~~aL~~aGi~p~dID~LIvs-~T~~~~~Pslaa~l~~~LGLr~~v~~~dL~gmGCsggv~aL 203 (466)
T PLN00415 141 ALNSLFKKTGIEPREVGIFIVN-CSLFNPNPSLSSMIVNRYKLKTDVKTYNLSGMGCSAGAISV 203 (466)
T ss_pred HHHHHHHHcCCCHHHCCEEEEE-CcCCCCCchHHHHHHHHhCCCCCceEEEeccccchHHHHHH
Confidence 4678899999999999998855 444 4799999999998422 1 23334443444444443
No 145
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=44.70 E-value=20 Score=32.76 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCCCCCCCeEEEE-cCCCCcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLV-GGSTRIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lv-GGsSriP~V~~~l~~~f~ 42 (330)
.|+++|+++|++++|||.+++. ...+-.|.+-.+|-+.|+
T Consensus 90 av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 90 AVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 5899999999999999987653 355778999999999995
No 146
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=43.55 E-value=86 Score=29.67 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=49.1
Q ss_pred HHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccc----cCCchhhHHhHHHHHHHHHh
Q 020168 7 CLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK----SINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 7 ~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~----~ln~deaVA~GAa~~a~~~s 68 (330)
+++....-..+-+..++.||..+-|.+.+.|...+++..+.. .+++|..-|.+=|+.|...-
T Consensus 280 Iv~s~~~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~l 345 (371)
T COG2377 280 IVKSVATLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRTL 345 (371)
T ss_pred HHHHHhhccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHHH
Confidence 344445566788999999999999999999999997655543 37888888888898887653
No 147
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=43.20 E-value=31 Score=32.43 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=22.6
Q ss_pred HHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020168 261 IEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGG 301 (330)
Q Consensus 261 l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~ 301 (330)
|++.++||.+++. +++.+..++.+-++.+-||.-++.|+.
T Consensus 10 LeeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi 49 (379)
T PF11593_consen 10 LEELEEKLASNDN-SKDSVMDKISEAQDSILPLRLQFNEFI 49 (379)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4555556654333 556666666666666666655555544
No 148
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=43.01 E-value=27 Score=33.68 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=34.3
Q ss_pred HHHHHHHH-cCCCCCCCCeEEEEcCCCCcH--HHHHHHHHHhCC
Q 020168 3 PVEKCLRD-AKMDKSSVHDVVLVGGSTRIP--KVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~-a~l~~~dI~~V~lvGGsSriP--~V~~~l~~~f~~ 43 (330)
.++++|++ +|++++|||.|++-|=+|.+- .=.+.|.+.|++
T Consensus 288 ai~~Al~~~Agi~~~dId~ie~hgtgt~~~D~~E~~al~~~~~~ 331 (421)
T PTZ00050 288 CMENALKDGANININDVDYVNAHATSTPIGDKIELKAIKKVFGD 331 (421)
T ss_pred HHHHHHHhccCCChhhCCEEECCCccCCCCCHHHHHHHHHHhcc
Confidence 57899999 999999999999999888664 444678889964
No 149
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=42.78 E-value=37 Score=32.31 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=28.1
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCC-----CcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGST-----RIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsS-----riP~V~~~l~~~f~ 42 (330)
..++++|+++|+++++||.|++ |.++ ..|..-..+...++
T Consensus 28 ~a~~~Al~dagl~~~~Id~vi~-g~~~~~~~~~~~~~a~~va~~lG 72 (389)
T PRK06064 28 EAGLEALEDAGIDGKDIDAMYV-GNMSAGLFVSQEHIAALIADYAG 72 (389)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE-EecccccccccccHHHHHHHHcC
Confidence 3567899999999999999874 3321 23545566777774
No 150
>PRK04262 hypothetical protein; Provisional
Probab=42.28 E-value=33 Score=32.13 Aligned_cols=39 Identities=13% Similarity=0.336 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC---CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST---RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS---riP~V~~~l~~~f~ 42 (330)
.++++|+++|++++|||.|++ +.+| ..|..-..|...++
T Consensus 58 Aa~~aL~~ag~~~~dId~li~-~s~~~~~~~p~~a~~v~~~Lg 99 (347)
T PRK04262 58 AARNALKRAGIDPKEIGAVYV-GSESHPYAVKPTATIVAEALG 99 (347)
T ss_pred HHHHHHHHcCCCHHHCCEEEE-EecCCCcccccHHHHHHHHcC
Confidence 478999999999999999875 4333 34666667777774
No 151
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=42.02 E-value=1.1e+02 Score=21.60 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=33.7
Q ss_pred EEEEEEeeCCccEEEEEEeccCCcceeeeecc--CCCCCCHHHHHHHHHHHH
Q 020168 161 INVCFDIDANGILNVSAEDKTTGQKNKITITN--DKGRLSKEEIEKMVQEAE 210 (330)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~t~~~~~~~i~~--~~~~ls~~ei~~~~~~~~ 210 (330)
....++++.+|.++|...+..+|.. .++++. ...-.|..+|.+++.+++
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~-~l~vtGI~~~~l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRV-ELTVTGISTSALNSSRDIVRLIAELR 65 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcE-EEEEcCcCHHHcCCHHHHHHHHHHHH
Confidence 6788999999999999999888865 233321 113456666777666554
No 152
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=41.90 E-value=30 Score=33.01 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.++++|+++|++++||+.|+.-|=+|+. +.-.+.++..|+.
T Consensus 279 a~~~Al~~Agi~~~dId~i~~hgtgt~~~D~~E~~ai~~~~~~ 321 (407)
T cd00828 279 AIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGA 321 (407)
T ss_pred HHHHHHHHcCCCHHHcCEEecccccCccccHHHHHHHHHHHhc
Confidence 5789999999999999999999988877 5666778888854
No 153
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=41.42 E-value=25 Score=35.23 Aligned_cols=41 Identities=27% Similarity=0.247 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.|+++|+++|++++||++|..-|=+|.. +.=.+.|.+.|+.
T Consensus 410 am~~AL~~AGl~p~dIdyInaHGTGT~~gD~~E~~Ai~~~Fg~ 452 (540)
T PLN02787 410 CIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQ 452 (540)
T ss_pred HHHHHHHHcCCCHHHCcEEEccCccCCCCCHHHHHHHHHHhCC
Confidence 5889999999999999999999988876 4445578889954
No 154
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=41.37 E-value=42 Score=32.22 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.6
Q ss_pred cHHHHHHHHcCCCCCCCCeEEE
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~l 23 (330)
+.+.++|+++|++++|||.|++
T Consensus 33 ea~~~AL~dagl~~~dID~v~v 54 (398)
T PRK06157 33 EAFLEALADAGIEPKDIDAAWF 54 (398)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE
Confidence 4578999999999999999885
No 155
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=40.70 E-value=66 Score=24.40 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=30.8
Q ss_pred eEEEEEEeeCC-ccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHH
Q 020168 160 QINVCFDIDAN-GILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKY 212 (330)
Q Consensus 160 ~i~v~~~~d~~-G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~ 212 (330)
...+.|.+|.+ |.+.|.+.+..||+.. ..++.+++-.+.+.+..+
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVI--------RqIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVI--------RQIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEE--------EEE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEE--------EeCCcHHHHHHHHHHHHH
Confidence 36789999886 7899999999998753 356677777777666554
No 156
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=40.64 E-value=51 Score=31.56 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.|+++|+++|+++++|++|..-|=+|.. +.=.+.|++.|+.
T Consensus 275 a~~~al~~ag~~~~~i~~v~~hgtgt~~~D~~E~~al~~~fg~ 317 (399)
T cd00832 275 AIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFGP 317 (399)
T ss_pred HHHHHHHHcCCCHHHccEEEeccCcCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999999988876 5667788999964
No 157
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=39.63 E-value=50 Score=31.50 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.5
Q ss_pred cHHHHHHHHcCCCCCCCCeEEE
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~l 23 (330)
+.+.++|++++++++|||.|++
T Consensus 28 eA~~~AL~dAgl~~~dId~vi~ 49 (389)
T PRK07516 28 RVAREALAHAGIAAGDVDGIFL 49 (389)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE
Confidence 4578999999999999999986
No 158
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=39.52 E-value=72 Score=29.35 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC--CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST--RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS--riP~V~~~l~~~f~ 42 (330)
-.+++|+++|++++|||.|++..-+. .+|..--.|...++
T Consensus 59 Aa~~aL~~ag~~~~~Id~li~~t~~~d~~~p~~a~~v~~~Lg 100 (326)
T PRK05963 59 AGDMALSDAGIERSDIALTLLATSTPDHLLPPSAPLLAHRLG 100 (326)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECCCCCCCCCcHHHHHHHHhC
Confidence 46899999999999999998755432 46877777888885
No 159
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=39.45 E-value=69 Score=31.10 Aligned_cols=65 Identities=9% Similarity=0.006 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEc----CCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVG----GSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 67 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvG----GsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~~~ 67 (330)
.++.+|+++++++++||.|++-= |....+.-+-.+...++...+..+++...+...-|...|+..
T Consensus 38 a~~~al~~agl~~~~Id~vv~G~~~~~~~~~~~~r~~~l~~gl~~~~p~~~V~~~CaSG~~ai~~A~~~ 106 (427)
T PRK09268 38 ALDGLVDRFGLQGERLGEVVAGAVLKHSRDFNLTRECVLGSALSPYTPAYDLQQACGTGLEAAILVANK 106 (427)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEecccCCccccHHHHHHHHcCCCCCCceeeeechhhHHHHHHHHHHHH
Confidence 57889999999999999988731 111122222224444533345667777666666666666543
No 160
>PLN03184 chloroplast Hsp70; Provisional
Probab=39.24 E-value=4.2e+02 Score=27.47 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHccC----CccchHHHHHHHHHHH
Q 020168 252 ADKKKIEDAIEEAIQWLDGN----QLAEADEFEDKMKELE 287 (330)
Q Consensus 252 ~e~~~i~~~l~e~~~Wl~~~----~~a~~ee~~~kl~~L~ 287 (330)
+.++.+...+..++++|.+. ...+.+++.+.+++++
T Consensus 566 eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e 605 (673)
T PLN03184 566 DTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELK 605 (673)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 35556666777777777421 2234455555555544
No 161
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=39.07 E-value=18 Score=28.59 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKV 33 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V 33 (330)
-+.++|+++|++++|||.+++-==-+-....
T Consensus 27 A~~~al~~ag~~~~did~~Ei~EaFA~~~l~ 57 (123)
T PF02803_consen 27 AARKALERAGLTPDDIDVIEINEAFAAQVLA 57 (123)
T ss_dssp HHHHHHHHHT--GGGESEEEE--SBHHHHHH
T ss_pred HHHHHHHHhCCCccccchhhccchhhhHHHH
Confidence 4689999999999999999998766555444
No 162
>PLN02939 transferase, transferring glycosyl groups
Probab=38.88 E-value=2.7e+02 Score=30.17 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhccCChhhHHHHHHHHHHHHHHHc
Q 020168 199 KEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD--EKISAKLPTADKKKIEDAIEEAIQWLD 269 (330)
Q Consensus 199 ~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~~--~~~~~~~~~~e~~~i~~~l~e~~~Wl~ 269 (330)
.++++.++..+......++.....+.-+.-|++++-++..++-. ++. ..+++-+-+.+.+.++..+..|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 239 KDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDV-SKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhccchhHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666667777778888777766643 112 12333333345555555555554
No 163
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=38.80 E-value=42 Score=30.38 Aligned_cols=49 Identities=24% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCC------CCccccCCchhhHHhHHHHHHH
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNG------KELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~------~~~~~~ln~deaVA~GAa~~a~ 65 (330)
|.+.|++-||.+..+.+-+.+++.+.. .++..+-..+.+.++|||+++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 567888877776666555556555421 1223333457788999998763
No 164
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=38.76 E-value=40 Score=32.29 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~ 42 (330)
.++++|+++|++++|||.|..-|-+|+. ..=.+.|.+.|+
T Consensus 284 a~~~al~~Agl~~~dId~i~~h~tgt~~~d~~E~~al~~~~~ 325 (424)
T smart00825 284 LIRQALARAGVDPADVDYVEAHGTGTPLGDPIEAEALAAVFG 325 (424)
T ss_pred HHHHHHHHhCCCHHHccEEEeeCCCCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999998874 444567888885
No 165
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=38.61 E-value=48 Score=31.53 Aligned_cols=38 Identities=21% Similarity=0.506 Sum_probs=26.5
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCC-----cHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTR-----IPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSr-----iP~V~~~l~~~f~ 42 (330)
+.++.+|+++|++++|||.|++ |.++. .| -..+...++
T Consensus 27 ~A~~~AL~dAgi~~~dID~vi~-g~~~~~~~~~~~--a~~v~~~lG 69 (385)
T PRK12578 27 ESIKEALNDAGVSQTDIELVVV-GSTAYRGIELYP--APIVAEYSG 69 (385)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE-EecccccccCCh--HHHHHHHhC
Confidence 3578899999999999999884 44331 33 344666663
No 166
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=37.97 E-value=63 Score=30.90 Aligned_cols=64 Identities=14% Similarity=0.020 Sum_probs=36.2
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEc--CCCCcHHHHHHHHHHhCCC--CccccCCchhhHHhHHHHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVG--GSTRIPKVQQLLQDFFNGK--ELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvG--GsSriP~V~~~l~~~f~~~--~~~~~ln~deaVA~GAa~~a~ 65 (330)
..++.+|+++|++++|||.|++-= .....|..-..+...+|-. .+..++|...+...-|...|+
T Consensus 32 ~A~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~a~~va~~lGl~~~~p~~~V~~~Casg~~ai~~A~ 99 (393)
T PRK05656 32 AVIRRLLEQTGLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGLPHSVPAMTLNKVCGSGLKALHLAA 99 (393)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEEecCCCCCCcHHHHHHHHcCCCCCcceEEecccchhHHHHHHHHH
Confidence 357899999999999999988621 1001233334466666321 344556654444444444444
No 167
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=37.37 E-value=49 Score=31.69 Aligned_cols=61 Identities=13% Similarity=0.039 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc---HHHHH-HHHHHhCC-CCccccCCchhhHHhHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI---PKVQQ-LLQDFFNG-KELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri---P~V~~-~l~~~f~~-~~~~~~ln~deaVA~GAa~~a 64 (330)
.++.+|+++++++++||.|+ +|-++-. |.+-+ .+....+. ..+..++|...+...-|...|
T Consensus 30 a~~~Al~~agl~p~dID~vi-~g~~~~~~~g~~~~~~~~~~~lg~~~~p~~~V~~~Casg~~al~~A 95 (393)
T cd00826 30 AIAAALEPAGVAAGAVEEAC-LGQVLGAGEGQNCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALA 95 (393)
T ss_pred HHHHHHHHcCCCHHHCCEEE-EEEccCCcccCcHHHHHHHHcCCCCCCcEEEecchhHHHHHHHHHH
Confidence 46778999999999999988 5432211 23333 35555432 234555665443333333333
No 168
>PRK00865 glutamate racemase; Provisional
Probab=37.32 E-value=90 Score=27.96 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHH
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a 64 (330)
..+|.|+| |+|.+|.+.+.+++.++ .. ..-+||.+++|.-+.-+.
T Consensus 176 ~g~d~iIL--GCTh~p~l~~~i~~~~~-~~-v~vIDp~~~~a~~~~~~l 220 (261)
T PRK00865 176 AGIDTLVL--GCTHYPLLKPEIQQVLG-EG-VTLIDSGEAIARRVARLL 220 (261)
T ss_pred CCCCEEEE--CCcCHHHHHHHHHHHcC-CC-CEEECCHHHHHHHHHHHH
Confidence 46777655 99999999999999984 22 245899888887776543
No 169
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=37.26 E-value=1.1e+02 Score=28.93 Aligned_cols=19 Identities=26% Similarity=0.421 Sum_probs=15.3
Q ss_pred cHHHHHHHHcCCCCCCCCe
Q 020168 2 EPVEKCLRDAKMDKSSVHD 20 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~ 20 (330)
..+.++|+++|+++.+++.
T Consensus 77 ~aa~~AL~dAgl~~~~~~~ 95 (406)
T cd00834 77 AAAEEALADAGLDPEELDP 95 (406)
T ss_pred HHHHHHHHHcCCCcccCCc
Confidence 3568899999999887764
No 170
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=37.26 E-value=47 Score=30.23 Aligned_cols=49 Identities=24% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCC--------CCccccCCchhhHHhHHHHHH
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNG--------KELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~--------~~~~~~ln~deaVA~GAa~~a 64 (330)
=|.+.|+|-||-+..|.+.+.|++.+.. .++..+-..+.++++|||+.+
T Consensus 244 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 244 VDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred cCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 3557777766656555544555444311 123334455788999999876
No 171
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=37.17 E-value=41 Score=32.53 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=33.3
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcH--HHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIP--KVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP--~V~~~l~~~f~ 42 (330)
..++++|++++++++||+.|..-|-+|..- .=...|.+.|+
T Consensus 293 ~ai~~AL~~agi~p~dId~i~~Hgtgt~~~d~~E~~al~~~~~ 335 (425)
T PRK06501 293 GAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFG 335 (425)
T ss_pred HHHHHHHHHcCCCHHHcCEEEecCccCcchHHHHHHHHHHHhc
Confidence 357899999999999999999999888763 44455777785
No 172
>PRK09604 UGMP family protein; Validated
Probab=37.10 E-value=36 Score=31.82 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=39.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCC--CCccccC---CchhhHHhHHHHHHHHHh
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNG--KELCKSI---NPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~--~~~~~~l---n~deaVA~GAa~~a~~~s 68 (330)
.+++.|.|.||...-..+++.|.+.+.. .++..+- -.|.++++|||=+-....
T Consensus 253 ~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 253 TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 3578899999999999999999988732 2232222 358999999996555544
No 173
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=37.09 E-value=66 Score=30.55 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=28.3
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsS-riP~V~~~l~~~f~ 42 (330)
..++++|++++++++|||.|++...+. ..+...-.|...++
T Consensus 102 ~Aa~~aL~~agi~~~dId~li~~s~~~~~~~~~a~~v~~~LG 143 (379)
T PLN02326 102 EAAKKALEMAGVDPEDVDLVLLCTSSPDDLFGSAPQVQAALG 143 (379)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEeCCCCccCcHHHHHHHHhC
Confidence 357899999999999999999764321 22223445666664
No 174
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=37.07 E-value=75 Score=29.31 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=27.3
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCC--CcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGST--RIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsS--riP~V~~~l~~~f~ 42 (330)
..++++|+++|++++|||.|++. .++ ..+...-.+...++
T Consensus 57 ~A~~~aL~~ag~~~~dId~vi~~-s~~~~~~~~~~~~v~~~Lg 98 (326)
T CHL00203 57 EAANKALDKAHMDPLEIDLIILA-TSTPDDLFGSASQLQAEIG 98 (326)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEE-eCCCCCCCchHHHHHHHhC
Confidence 35789999999999999999964 222 22223345666664
No 175
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=37.06 E-value=46 Score=31.83 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~ 42 (330)
.++++|+++|++++||+.|+.-|=+|.+ +.=.+.|...|+
T Consensus 281 a~~~Al~~agi~~~dId~v~~hgtgt~~~d~~E~~al~~~~~ 322 (411)
T PRK07314 281 AMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFG 322 (411)
T ss_pred HHHHHHHHcCCCHHHCCEEEccccCCccccHHHHHHHHHHhc
Confidence 5789999999999999999999988855 455567888895
No 176
>KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.53 E-value=22 Score=33.40 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHH--HHHHHhCCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQ--LLQDFFNGK 44 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~--~l~~~f~~~ 44 (330)
.++++|++||+.++||++|=---=||-+-=..+ .|+..|+..
T Consensus 306 am~raL~~Agl~pe~i~YvNAHATST~~GD~aE~~Ai~~vf~~~ 349 (440)
T KOG1394|consen 306 AMERALKDAGLSPEDIDYVNAHATSTPLGDAAEAEAIKRVFGEH 349 (440)
T ss_pred HHHHHHHHcCCChhhcCeeecccccCcCchHHHHHHHHHHhccC
Confidence 589999999999999999988877777654443 456778543
No 177
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=36.40 E-value=1e+02 Score=25.89 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=16.3
Q ss_pred HHHHHHHHHHccC--CccchHHHHHHHHHHHHHHHHHH
Q 020168 259 DAIEEAIQWLDGN--QLAEADEFEDKMKELEGICNPII 294 (330)
Q Consensus 259 ~~l~e~~~Wl~~~--~~a~~ee~~~kl~~L~~~~~~i~ 294 (330)
+.++.+++++++. +-.+-+++-++|-.-+++...+.
T Consensus 24 e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 24 EILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3344555555542 12344444444444444444444
No 178
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=36.10 E-value=3.1e+02 Score=24.45 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 020168 253 DKKKIEDAIEEAIQWL 268 (330)
Q Consensus 253 e~~~i~~~l~e~~~Wl 268 (330)
+......+++.+..|+
T Consensus 154 El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 154 ELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 179
>PLN02287 3-ketoacyl-CoA thiolase
Probab=35.97 E-value=65 Score=31.56 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcC----CCCcHHHHHHHHHHhCCC--CccccCCchhhHHhHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGG----STRIPKVQQLLQDFFNGK--ELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGG----sSriP~V~~~l~~~f~~~--~~~~~ln~deaVA~GAa~~a~ 65 (330)
.++.+|+++|++++|||.|++ |- ...-+.....+....+-. .+..++|...+...-|...|+
T Consensus 78 A~~~AL~dAgl~~~dID~vv~-G~~~~~~~~~~~~~r~~a~~~Gl~~~~pa~~V~~~CaSG~~Ai~~Aa 145 (452)
T PLN02287 78 VLKAVVEKTGLNPSEVGDIVV-GTVLAPGSQRANECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVA 145 (452)
T ss_pred HHHHHHHHcCCCHHHCCEEEE-EeecCcccccchHHHHHHHHCCCCCCcceEEEeccCchHHHHHHHHH
Confidence 578899999999999999974 32 111233334455555322 233455544444333334443
No 180
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=35.91 E-value=1.9e+02 Score=21.90 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=37.4
Q ss_pred eEEEEeecCCCCCeEEEEEeeccccccCCCceeeEEEecCCCCCCCCCCeEEEEEEeeC--CccEEEEE
Q 020168 111 KEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDA--NGILNVSA 177 (330)
Q Consensus 111 ~~~~~~~~~d~q~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~~~d~--~G~l~v~~ 177 (330)
.+..|....+....+.|.+|.-+.. .+..||++.+. +.....+.. ....|.+.. .|.|.++.
T Consensus 52 e~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g~~-~~~~~~L~~~~~g~l~~~~ 115 (119)
T cd04036 52 ETFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLGEK-VRVTFSLNPQGKEELEVEF 115 (119)
T ss_pred eEEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCCCc-EEEEEECCCCCCceEEEEE
Confidence 3444544333334578888875432 56689998877 443334443 677777765 47777664
No 181
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=35.87 E-value=2.9e+02 Score=23.88 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHcc
Q 020168 221 KKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDG 270 (330)
Q Consensus 221 ~~~~a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~ 270 (330)
..+..+.+||..|..++.++... +..++++++.-.+..++...+|..
T Consensus 196 ~le~~k~~Le~~ia~~k~K~e~~---e~r~~E~r~ieEkk~~eei~fLk~ 242 (259)
T KOG4001|consen 196 VLEDKKKELELKIAQLKKKLETD---EIRSEEEREIEEKKMKEEIEFLKE 242 (259)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888877777652 233456666666666666666655
No 182
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=35.71 E-value=1.9e+02 Score=22.11 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 020168 223 VEAKNALENYAYNMRNTIKD 242 (330)
Q Consensus 223 ~~a~N~LE~~i~~~r~~l~~ 242 (330)
.++.++|..++..+..+|.+
T Consensus 11 ~~l~~el~~L~d~lEevL~s 30 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKS 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666654
No 183
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=35.55 E-value=30 Score=27.03 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=33.0
Q ss_pred cHHHHHHHHcCCCCCCCC-eEEEEcCCCCcHHHHHHHHHHhCC
Q 020168 2 EPVEKCLRDAKMDKSSVH-DVVLVGGSTRIPKVQQLLQDFFNG 43 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~-~V~lvGGsSriP~V~~~l~~~f~~ 43 (330)
.-|+.+|+.+|.+++||- -.+.+-..+..+.+.+...++|++
T Consensus 55 ~ni~~~L~~aG~~~~dvv~~~vyv~~~~~~~~~~~~~~~~f~~ 97 (124)
T TIGR00004 55 ENLKAILEAAGLSLDDVVKTTVFLTDLNDFAEVNEVYGQYFDE 97 (124)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEeChHHHHHHHHHHHHHcCC
Confidence 347889999999988884 445556778889999989999954
No 184
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=35.33 E-value=42 Score=30.81 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
.|+++|+++|++++||+.+++-.++ +.+.+.+.+.+
T Consensus 230 ~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~l 265 (325)
T PRK12879 230 GARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKL 265 (325)
T ss_pred HHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHc
Confidence 5789999999999999999999887 44456677776
No 185
>PRK06840 hypothetical protein; Validated
Probab=35.28 E-value=38 Score=31.47 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchh
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE 54 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~de 54 (330)
.|+++|+++|++++||+.+++.-++ +.+-+.+.+.+ +.+..+..+.++
T Consensus 242 ~i~~~L~~~gl~~~did~~~~h~~~---~~~~~~~~~~L-gl~~~~~~~~~~ 289 (339)
T PRK06840 242 VIREALRKSGYTPKDIDYLAILHMK---RSAHIALLEGL-GLTEEQAIYLDE 289 (339)
T ss_pred HHHHHHHHcCCCHHHCCEEEECCcC---HHHHHHHHHHc-CCCHHHeEeHHh
Confidence 5778999999999999999887775 33345567776 433333233344
No 186
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=35.18 E-value=27 Score=32.27 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=31.0
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
..++++|+++|++++||+.+++-.++.++ .+.+.+.|
T Consensus 234 ~~i~~~L~~~gl~~~did~~~~H~~~~~~---~~~i~~~l 270 (329)
T PRK07204 234 KFIDKLLMDAGYTLADIDLIVPHQASGPA---MRLIRKKL 270 (329)
T ss_pred HHHHHHHHHcCCCHHHCCEEEeCCCCHHH---HHHHHHHc
Confidence 35789999999999999999999998764 45677777
No 187
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=34.61 E-value=76 Score=30.40 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEE
Q 020168 3 PVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~l 23 (330)
.++.+|+++|++++|||.|++
T Consensus 33 A~~~aL~~agl~~~dID~vi~ 53 (393)
T PRK08235 33 AIKEALERANVSAEDVEEVIM 53 (393)
T ss_pred HHHHHHHHcCCCHHHCCEEEE
Confidence 468899999999999999986
No 188
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=34.58 E-value=40 Score=32.77 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHH--HHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKV--QQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V--~~~l~~~f~~ 43 (330)
.++++|+++|++++||+.|++-|=+|..--. .+.+.+.|++
T Consensus 304 a~~~Al~~Agi~~~dId~ve~hgtgt~~~D~~E~~ai~~~~~~ 346 (437)
T PLN02836 304 AMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSE 346 (437)
T ss_pred HHHHHHHHcCCCHhHcCEEEccCCcCcCcCHHHHHHHHHHhcc
Confidence 4789999999999999999999988864433 3457888854
No 189
>PRK09557 fructokinase; Reviewed
Probab=34.48 E-value=48 Score=30.18 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhC--------CCCccccCCchhhHHhHHHHHH
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFN--------GKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~--------~~~~~~~ln~deaVA~GAa~~a 64 (330)
=|.+.|+|-||-++.+.+-..|++.+. ..++..+.-.+.+.++|||+.+
T Consensus 243 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 243 LDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred hCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 355777777777766655544544331 1123333445778999999854
No 190
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=34.16 E-value=68 Score=30.77 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.4
Q ss_pred cHHHHHHHHcCCCCCCCCeEEE
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~l 23 (330)
+.+..+|+++|++++|||.|++
T Consensus 32 eA~~~AL~dAgl~~~dID~vi~ 53 (403)
T PRK06289 32 EVVDGTLAAAGVDADDIEVVHV 53 (403)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE
Confidence 3568899999999999999985
No 191
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.84 E-value=3.9e+02 Score=24.78 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHccCC---ccchHHHHHHHHHHHHH
Q 020168 251 TADKKKIEDAIEEAIQWLDGNQ---LAEADEFEDKMKELEGI 289 (330)
Q Consensus 251 ~~e~~~i~~~l~e~~~Wl~~~~---~a~~ee~~~kl~~L~~~ 289 (330)
.+++..+...+.+++.-++... ......++.+++.|+.+
T Consensus 245 ~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 245 TNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3677888888888888887642 23555666666666554
No 192
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.82 E-value=4.8e+02 Score=25.81 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhhh---ccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHH
Q 020168 220 KKKVEAKNALENYAYNMRNTIKD-EKIS---AKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICN 291 (330)
Q Consensus 220 ~~~~~a~N~LE~~i~~~r~~l~~-~~~~---~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~ 291 (330)
..+.++||.+.++=+++-+++-. +.+. .-+++ +-++|+..|+.+..-|+. ..++..||++|.+...
T Consensus 376 ~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~-~EE~Lr~Kldtll~~ln~-----Pnq~k~Rl~~L~e~~r 445 (508)
T KOG3091|consen 376 AKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTP-DEEELRAKLDTLLAQLNA-----PNQLKARLDELYEILR 445 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCc-cHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHH
Confidence 34566777777776666555543 2122 12333 335666777666666654 2677777777776543
No 193
>PLN02939 transferase, transferring glycosyl groups
Probab=33.72 E-value=4e+02 Score=28.94 Aligned_cols=82 Identities=10% Similarity=0.188 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHccC---CccchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 020168 228 ALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGN---QLAEADEFEDKMKELEGICNPIIAKMYQGGGAD 304 (330)
Q Consensus 228 ~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~---~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~~~~ 304 (330)
+|...+..++..|.+.... ..+.+..+.+.+.++-.++.|... -.+-.+.|++-.+++++..+.+..+-...+..+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (977)
T PLN02939 328 DLRDKVDKLEASLKEANVS-KFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEH 406 (977)
T ss_pred HHHHHHHHHHHHHHHhhHh-hhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Confidence 3445555555555442222 234445555667777777777653 245667788888888888888777766555445
Q ss_pred CCCCCC
Q 020168 305 AGASMD 310 (330)
Q Consensus 305 ~~~~~~ 310 (330)
|...|+
T Consensus 407 ~~~~~~ 412 (977)
T PLN02939 407 PADDMP 412 (977)
T ss_pred chhhCC
Confidence 544443
No 194
>PHA02414 hypothetical protein
Probab=33.66 E-value=2.1e+02 Score=21.54 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCC
Q 020168 227 NALENYAYNMRNTIKDEKISAKLP 250 (330)
Q Consensus 227 N~LE~~i~~~r~~l~~~~~~~~~~ 250 (330)
|+|-+.+..++++++.+.+....+
T Consensus 7 n~Lv~~v~~ledKiQ~Gelt~kgd 30 (111)
T PHA02414 7 NNLVSQVETLEDKIQEGELTDKGD 30 (111)
T ss_pred HHHHHHHHHHHHHHhcCccccCCc
Confidence 455555555666666555544443
No 195
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=33.38 E-value=98 Score=29.63 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcC--CCCcH-HHHHHHHHHhCC--CCccccCCchhhHHhHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGG--STRIP-KVQQLLQDFFNG--KELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGG--sSriP-~V~~~l~~~f~~--~~~~~~ln~deaVA~GAa~~a~ 65 (330)
.++.+|+++|+++++||.|++--. ....| .+-..+....|- ..+..++|...+...=|...|+
T Consensus 34 A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~~~a~~i~~~lGl~~~~p~~~V~~aCaSg~~Al~~A~ 101 (392)
T PRK07108 34 VVQHAVERAKLDPAEVEDVIMGCANPEGATGANIARQIALRAGLPVTVPGMTVNRFCSSGLQTIALAA 101 (392)
T ss_pred HHHHHHHHcCCCHHHCCcEEEEEeecccccccHHHHHHHHHcCCCCCCceeeecchhhHHHHHHHHHH
Confidence 578999999999999999875211 11122 355666666631 2445556654444333334443
No 196
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=33.21 E-value=29 Score=32.22 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 18 VHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 18 I~~V~lvGGsSriP~V~~~l~~~f 41 (330)
+..|+++||+|..|-+++.|...+
T Consensus 318 ~~NIv~iGGn~~fPgF~~RL~~El 341 (400)
T KOG0680|consen 318 LENIVCIGGNSNFPGFRQRLAREL 341 (400)
T ss_pred HhcEEEecCccCCcchHHHHHHHH
Confidence 467999999999999999998765
No 197
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=33.02 E-value=33 Score=31.42 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcH--HHHHHHHHHh
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIP--KVQQLLQDFF 41 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP--~V~~~l~~~f 41 (330)
.++++|+++|++++||+.+++-+.++++- ..+..+...+
T Consensus 210 ~i~~al~~agl~~~did~~~~h~~~~~~~~~~e~~~~~~~~ 250 (332)
T cd00825 210 AAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEF 250 (332)
T ss_pred HHHHHHHHcCCCHhHCCEEEccCCCCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999887643 4444445555
No 198
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=32.98 E-value=70 Score=29.95 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC--CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST--RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS--riP~V~~~l~~~f~ 42 (330)
-.+++|+++|++++|||.|++...+. ..|..--.+.+.+|
T Consensus 57 Aa~~aL~~agl~~~dID~li~~s~~~~~~~p~~a~~v~~~LG 98 (345)
T TIGR00748 57 AARNALKRAKIDPKDIGAVYVGSESHPYAVKPTATIVAEAIG 98 (345)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEecCCCccccchHHHHHHHcC
Confidence 46889999999999999998643222 12555555767774
No 199
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.82 E-value=4.1e+02 Score=26.84 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcc-C-CccchHHHHHHHHHHHHHH
Q 020168 256 KIEDAIEEAIQWLDG-N-QLAEADEFEDKMKELEGIC 290 (330)
Q Consensus 256 ~i~~~l~e~~~Wl~~-~-~~a~~ee~~~kl~~L~~~~ 290 (330)
.+.++..+..+.+++ + +....+++++|+..|+.+.
T Consensus 277 ~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~ 313 (557)
T COG0497 277 ELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLA 313 (557)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444444555554 2 2234667777777776654
No 200
>PRK09698 D-allose kinase; Provisional
Probab=32.81 E-value=60 Score=29.52 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCc-----HHHHHHHHHHhC------CCCccccCCchhhHHhHHHHHHH
Q 020168 16 SSVHDVVLVGGSTRI-----PKVQQLLQDFFN------GKELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 16 ~dI~~V~lvGGsSri-----P~V~~~l~~~f~------~~~~~~~ln~deaVA~GAa~~a~ 65 (330)
=|.+.|+|-||.++. +.+++.+++..- ..++..+...+.+.++|||+.+.
T Consensus 235 ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 235 FDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred hCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 355777777776653 456666766431 11234444567889999998764
No 201
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=32.46 E-value=58 Score=23.58 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=21.8
Q ss_pred HHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 8 LRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 8 l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
|+++|++++|||.+++-=.+- +.++. +.+.+
T Consensus 1 L~~~g~~~~did~~i~hq~~~--~~~~~-~~~~l 31 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASK--KILDS-IAKRL 31 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSH--HHHHH-HHHHH
T ss_pred CccccCCHHHCCEEEeCCCCH--HHHHH-HHHHc
Confidence 689999999999999998773 44444 66777
No 202
>PLN03171 chalcone synthase-like protein; Provisional
Probab=32.40 E-value=66 Score=30.91 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCC-CcHHHHHHHHHHhC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGST-RIPKVQQLLQDFFN 42 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsS-riP~V~~~l~~~f~ 42 (330)
-.+++|+++|++++|||.|+++-.+. .+|..--.|.+.+|
T Consensus 115 Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LG 155 (399)
T PLN03171 115 AAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLG 155 (399)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhC
Confidence 46889999999999999999843222 47988888999884
No 203
>PRK13881 conjugal transfer protein TrbI; Provisional
Probab=32.39 E-value=2.2e+02 Score=27.92 Aligned_cols=41 Identities=12% Similarity=0.268 Sum_probs=31.2
Q ss_pred CChhhHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHHH
Q 020168 249 LPTADKKKIEDAIEEAIQWLDGN-QLAEADEFEDKMKELEGI 289 (330)
Q Consensus 249 ~~~~e~~~i~~~l~e~~~Wl~~~-~~a~~ee~~~kl~~L~~~ 289 (330)
..+.-|+++...+..+..-++.. ..-....|+++|..|+..
T Consensus 176 ~~~~~~~e~la~~a~~~~~~~~~~~~d~~~~y~~~l~~~~~~ 217 (472)
T PRK13881 176 GTPQTRDEMLARIAAVRQQIDAQRSNDPTAAYQARLAQLRGM 217 (472)
T ss_pred CCCCchHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhc
Confidence 44567888888999988888875 333567899999988753
No 204
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.22 E-value=2.2e+02 Score=25.58 Aligned_cols=37 Identities=11% Similarity=0.369 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHccC-Ccc---chHHHHHHHHHHHHHHH
Q 020168 255 KKIEDAIEEAIQWLDGN-QLA---EADEFEDKMKELEGICN 291 (330)
Q Consensus 255 ~~i~~~l~e~~~Wl~~~-~~a---~~ee~~~kl~~L~~~~~ 291 (330)
..++++...+=.||.++ ... +.+.|+++.+-++.++.
T Consensus 163 eplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~~ 203 (267)
T KOG3133|consen 163 EPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIES 203 (267)
T ss_pred hhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 46788888888999986 333 55667777666665544
No 205
>PRK05790 putative acyltransferase; Provisional
Probab=32.18 E-value=1.1e+02 Score=29.26 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCCCCCCeEEE
Q 020168 3 PVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~l 23 (330)
.++.+|+++|++++|||.|++
T Consensus 33 A~~~AL~dAgl~~~dID~vi~ 53 (393)
T PRK05790 33 VIKAALERAGVPPEQVDEVIM 53 (393)
T ss_pred HHHHHHHHcCCCHHHCCeEEE
Confidence 468899999999999999874
No 206
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=32.13 E-value=33 Score=33.17 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHH-HhCCCCccccCCchhhHHhHHHHHH
Q 020168 4 VEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQD-FFNGKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 4 i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~-~f~~~~~~~~ln~deaVA~GAa~~a 64 (330)
|+-.|+++|++++||+.|+|.||--.-=-+++.+.= +|+.....+-.-.-.++-.||.+..
T Consensus 314 i~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al~GA~~~L 375 (412)
T PF14574_consen 314 IEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAALAGARMAL 375 (412)
T ss_dssp HHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHHHHHHHHh
Confidence 567899999999999999999998776666666642 3433322333333446667776643
No 207
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.10 E-value=2.5e+02 Score=22.06 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020168 253 DKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGG 301 (330)
Q Consensus 253 e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e~~ 301 (330)
++.++...|++-.+.|+-. ...++.+-+.|+.-++.+...+...-
T Consensus 67 ~k~~~~~eL~er~E~Le~r----i~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 67 SKEEAVDELEERKETLELR----IKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555442 44455555555555555555555544
No 208
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.07 E-value=5.1e+02 Score=26.41 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=37.2
Q ss_pred HcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHH
Q 020168 10 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 10 ~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~ 65 (330)
-.+.-|+...-|.++|+.-+--.+++..++++ ..+...+||.+- |.-||+.|+
T Consensus 72 il~~lP~~tkLVQVTg~~g~~~sL~~lArr~G--~~~~~~~~P~ee-A~~~A~LA~ 124 (652)
T COG2433 72 ILKRLPEGTKLVQVTGRPGEQESLWELARRHG--IRVNGKLNPYEE-AYACARLAS 124 (652)
T ss_pred HHHhCCCCceEEEEeCCCCCcchHHHHHHHhC--CCCCCCCChHHH-HHHHHHHHh
Confidence 34455778899999999888888877666664 466667888663 344555554
No 209
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.85 E-value=5.2e+02 Score=25.66 Aligned_cols=6 Identities=17% Similarity=0.650 Sum_probs=2.5
Q ss_pred eEEEEc
Q 020168 20 DVVLVG 25 (330)
Q Consensus 20 ~V~lvG 25 (330)
-.+++|
T Consensus 29 ~~~i~G 34 (562)
T PHA02562 29 KTLITG 34 (562)
T ss_pred EEEEEC
Confidence 334444
No 210
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=31.68 E-value=1.2e+02 Score=29.44 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcC--CCCcHHHHHHHHHHhCC--CCccccCCchhhHHhHHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGG--STRIPKVQQLLQDFFNG--KELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGG--sSriP~V~~~l~~~f~~--~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
.++.+|+++|+.+++||.|++=-. ...=+.+.+.+....|- ..+..++|...+...-|.+.|+.
T Consensus 36 a~~~al~~agl~~~~ID~vi~G~~~~~~~~~~~ar~~a~~aGl~~~~P~~tV~~aCaSG~~Ai~~Aa~ 103 (428)
T PRK08963 36 VVGELLARSEIDPELIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAE 103 (428)
T ss_pred HHHHHHHHcCCCHHHCCEEEEeccCCCCCccHHHHHHHHHCCCCCCCcceeehhhhHHHHHHHHHHHH
Confidence 578899999999999999876211 01102233445555532 24566677665555555555554
No 211
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=31.54 E-value=1.1e+02 Score=29.42 Aligned_cols=62 Identities=24% Similarity=0.240 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCCCCCCeEEEE----cCCCCcHHHHHHHHHHhC--CCCccccCCchhhHHhHHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLV----GGSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lv----GGsSriP~V~~~l~~~f~--~~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
.++.+|+++|+++++||.|++= +|....+. +. +....| ...+..++|...+...-|.+.|+.
T Consensus 34 a~~~al~~agi~~~~Id~vv~G~~~~~~~g~~~~-r~-~~~~~Gl~~~~p~~~V~~~CaSG~~Ai~~A~~ 101 (392)
T PRK06633 34 LIKDILQNSKIDPALVNEVILGQVITGGSGQNPA-RQ-TLIHAGIPKEVPGYTINKVCGSGLKSVALAAN 101 (392)
T ss_pred HHHHHHHHcCCCHHHcCEEEEEecCccccccHHH-HH-HHHHCCCCCCccchhhcchhHHHHHHHHHHHH
Confidence 5788999999999999998772 12122222 33 334442 224566677665555555555554
No 212
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.52 E-value=6.9e+02 Score=26.95 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hhhhccCChhhHHHHHHHHHHHHHHHccC-------C------ccchHHHHHHHHH
Q 020168 221 KKVEAKNALENYAYNMRNTIKD--EKISAKLPTADKKKIEDAIEEAIQWLDGN-------Q------LAEADEFEDKMKE 285 (330)
Q Consensus 221 ~~~~a~N~LE~~i~~~r~~l~~--~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~-------~------~a~~ee~~~kl~~ 285 (330)
+....+-.||.. .++|.+|.. -.+ .-+...-+...+++.+|=+.+ . ..+++--++|.+.
T Consensus 256 Elekmkiqleql-qEfkSkim~qqa~L-----qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaes 329 (1243)
T KOG0971|consen 256 ELEKMKIQLEQL-QEFKSKIMEQQADL-----QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAES 329 (1243)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444455555544 355655543 111 123334444555555554432 0 1144555566666
Q ss_pred HHHHHHHHHHHHHh
Q 020168 286 LEGICNPIIAKMYQ 299 (330)
Q Consensus 286 L~~~~~~i~~R~~e 299 (330)
|+.-+.....|+.|
T Consensus 330 LQ~eve~lkEr~de 343 (1243)
T KOG0971|consen 330 LQQEVEALKERVDE 343 (1243)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555555444
No 213
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=31.17 E-value=1.2e+02 Score=28.98 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCCCCCCeEEE
Q 020168 3 PVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~l 23 (330)
.++++|+++|++++|||.|++
T Consensus 28 A~~~Al~dAgl~~~dID~vv~ 48 (386)
T TIGR01930 28 VIKELLERNPLDPELIDDVIF 48 (386)
T ss_pred HHHHHHHHcCCCHHHCCEEEE
Confidence 468899999999999999985
No 214
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=31.11 E-value=59 Score=31.25 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.++++|+++|++++||+.|+.-|=+|.. +.=...|++.|++
T Consensus 293 a~~~Al~~Agi~p~dId~i~~hgtgt~~~D~~E~~al~~~fg~ 335 (424)
T PRK06333 293 AMLIALRQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFGH 335 (424)
T ss_pred HHHHHHHHcCCCHHHCCEEeccCCCCccchHHHHHHHHHHhCC
Confidence 5789999999999999999999977774 2334567888964
No 215
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.09 E-value=2.7e+02 Score=22.04 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 020168 195 GRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRN 238 (330)
Q Consensus 195 ~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~ 238 (330)
...+.++-+++-+........+........+|+.+|.+-...-.
T Consensus 12 v~Vt~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~E 55 (131)
T KOG1760|consen 12 VKVTFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNE 55 (131)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566665555555555556666777777888888776554443
No 216
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=30.58 E-value=52 Score=29.42 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHH
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 62 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~ 62 (330)
.++|.|+ =|+|..|++.+.+++.|+ ..+ .-+||.+++|.=+.-
T Consensus 171 ~~~d~lI--LGCTh~P~l~~~i~~~~~-~~v-~~IDp~~~la~~~~~ 213 (251)
T TIGR00067 171 TLPDTVV--LGCTHFPLLKEEIEQYLP-EHV-RLVDSGVHTARRTAW 213 (251)
T ss_pred CCCCEEE--ECcCChHHHHHHHHHHcC-CCc-EEECCHHHHHHHHHH
Confidence 4677764 499999999999999994 333 568998888876643
No 217
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=30.52 E-value=1e+02 Score=29.52 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=18.1
Q ss_pred HHHHHHHHcCCCCCCCCe---EEEEcC
Q 020168 3 PVEKCLRDAKMDKSSVHD---VVLVGG 26 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~---V~lvGG 26 (330)
...++|+++|+++.+|+. -+++|.
T Consensus 94 aa~~Al~dAGl~~~~id~~~~gv~~g~ 120 (424)
T smart00825 94 VAWEALEDAGIDPESLRGSRTGVFVGA 120 (424)
T ss_pred HHHHHHHHcCCChhHcCCCCCEEEEEE
Confidence 467899999999999983 444453
No 218
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.47 E-value=4e+02 Score=26.94 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHccC----------CccchHHHHHHHHHHHHHHHHHHH
Q 020168 226 KNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGN----------QLAEADEFEDKMKELEGICNPIIA 295 (330)
Q Consensus 226 ~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~----------~~a~~ee~~~kl~~L~~~~~~i~~ 295 (330)
++++++|-.+++..-.. .+-++.+.....+.+++...-+... -....+.++..+.+|++.-..=..
T Consensus 190 ~~~~~~yk~~v~~i~~~----~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~ 265 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKK----DIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLK 265 (555)
T ss_pred chhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHH
Confidence 56666666665554321 2334444444444444333333211 123567777777777777777777
Q ss_pred HHHhcCCCC
Q 020168 296 KMYQGGGAD 304 (330)
Q Consensus 296 R~~e~~~~~ 304 (330)
|+.+..+..
T Consensus 266 ~L~~~~~~~ 274 (555)
T TIGR03545 266 RLENKYAIK 274 (555)
T ss_pred HHHHHhCCC
Confidence 887766443
No 219
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=30.45 E-value=92 Score=29.18 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=32.0
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCC-CCcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGS-TRIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGs-SriP~V~~~l~~~f~ 42 (330)
..++++|+++|+++++||.|+++..+ ..+|.+-..|...+|
T Consensus 91 ~Aa~~aL~~a~~~~~~Id~li~~s~~~~~~P~~a~~i~~~lg 132 (361)
T cd00831 91 EAARGALDEAGLRPSDIDHLVVNTSTGNPTPSLDAMLINRLG 132 (361)
T ss_pred HHHHHHHHHhCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 34688999999999999999976522 246778788888884
No 220
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=30.33 E-value=35 Score=29.89 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=26.8
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPK 32 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~ 32 (330)
+.++++|+++|++++||+.+++-+.++.+..
T Consensus 149 ~~i~~~l~~ag~~~~did~~~~h~~~~~~~~ 179 (254)
T cd00327 149 RAARKALEGAGLTPSDIDYVEAHGTGTPIGD 179 (254)
T ss_pred HHHHHHHHHcCCCHHHCCEEEccCCcCcccc
Confidence 3578999999999999999999998887543
No 221
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=30.16 E-value=64 Score=29.49 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCc-HHHHHHHHHHhCC---------CCccccCCchhhHHhHHHHHHHH
Q 020168 17 SVHDVVLVGGSTRI-PKVQQLLQDFFNG---------KELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 17 dI~~V~lvGGsSri-P~V~~~l~~~f~~---------~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
|-+.|+|-|+.+.. |.+.+.+++.+.. .++..+--.+.++++|||..+..
T Consensus 251 dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~~ 310 (318)
T TIGR00744 251 NPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLART 310 (318)
T ss_pred CCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHHH
Confidence 45677777766553 4555555544311 12333334577899999987653
No 222
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=29.96 E-value=43 Score=31.11 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQ 34 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~ 34 (330)
.|+++|+++|+++.|||.|-+.-|.-..+.++
T Consensus 52 ~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 52 LIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 47899999999999999999999877777665
No 223
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=29.86 E-value=1.1e+02 Score=29.27 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=36.1
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcC-----CCCcHHHHHHHHHHhCC--CCccccCCchhhHHhHHHHHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGG-----STRIPKVQQLLQDFFNG--KELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGG-----sSriP~V~~~l~~~f~~--~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
+.++.+|+++|++++|||.|++ |- ....+. ..+...++- ..+..++|...+...-|...|+.
T Consensus 31 ~a~~~al~dAgl~~~~ID~vv~-g~~~~~~~~~~~~--~~~~~~~Gl~~~~p~~~v~~~caSg~~av~~Aa~ 99 (394)
T PLN02644 31 IAIQAALERAGVDPALVQEVFF-GNVLSANLGQAPA--RQAALGAGLPPSTICTTVNKVCASGMKAVMLAAQ 99 (394)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE-EecCcCCcCCcHH--HHHHHhcCCCCCCceEEEeccchHHHHHHHHHHH
Confidence 3578899999999999999984 32 122222 235555531 12344566555555444454543
No 224
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=29.74 E-value=1.4e+02 Score=27.94 Aligned_cols=41 Identities=7% Similarity=0.021 Sum_probs=33.1
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHH--HHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQ--QLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~--~~l~~~f~ 42 (330)
..|+++|++++++++||+.|..-|-+++.--.. ..+...|+
T Consensus 238 ~ai~~AL~~agl~~~dId~v~ah~~gt~~~d~~e~~A~~~~f~ 280 (348)
T PRK06147 238 QAIRAALAEAGCGLEDMDYRIADLNGEQYRFKEAALAEMRLFR 280 (348)
T ss_pred HHHHHHHHHcCCCHHHCCEEEcCCCCCccchHHHHHHHHHHhh
Confidence 357899999999999999999999888774443 35677785
No 225
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=29.66 E-value=39 Score=33.23 Aligned_cols=53 Identities=30% Similarity=0.389 Sum_probs=34.7
Q ss_pred CCeEEEEcCCCCc--HHHHHHHHHHhCCCCc------------cccCCchhhHHhHHHHHHHHHhCC
Q 020168 18 VHDVVLVGGSTRI--PKVQQLLQDFFNGKEL------------CKSINPDEAVAYGAAVQAAILSGE 70 (330)
Q Consensus 18 I~~V~lvGGsSri--P~V~~~l~~~f~~~~~------------~~~ln~deaVA~GAa~~a~~~s~~ 70 (330)
++.|+|=|||.|| |-+|+.|-+...+.+- ...-.|--.+|+|---++|++++.
T Consensus 519 ~NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a 585 (628)
T KOG2411|consen 519 VNGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGA 585 (628)
T ss_pred EccEeecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCC
Confidence 5889999999998 7888888664322211 111123445777777777887744
No 226
>PRK03918 chromosome segregation protein; Provisional
Probab=29.56 E-value=6.5e+02 Score=26.71 Aligned_cols=19 Identities=11% Similarity=0.122 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHHHHHHHc
Q 020168 251 TADKKKIEDAIEEAIQWLD 269 (330)
Q Consensus 251 ~~e~~~i~~~l~e~~~Wl~ 269 (330)
+.+...+...+.+++..+.
T Consensus 658 ~~~~~~l~~~~~~l~~~l~ 676 (880)
T PRK03918 658 EEEYEELREEYLELSRELA 676 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 227
>PRK06059 lipid-transfer protein; Provisional
Probab=29.51 E-value=1.2e+02 Score=28.88 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEE
Q 020168 3 PVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~l 23 (330)
.++++|+++|++++|||.|++
T Consensus 30 A~~~Al~dAgl~~~dId~vi~ 50 (399)
T PRK06059 30 AARAALADAGLDWRDVQLVVG 50 (399)
T ss_pred HHHHHHHHcCCCHHHCCEEEE
Confidence 468899999999999999985
No 228
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=29.41 E-value=26 Score=34.46 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=39.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCC-----C---------CccccCCchhhHHhHHHHHHHHHh
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNG-----K---------ELCKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~-----~---------~~~~~ln~deaVA~GAa~~a~~~s 68 (330)
--++|++|||+-..|.+.+.|++..-. . +.-+..||.-.+=.|||++|-+-.
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 357899999999999999999987632 1 123346777778899999987655
No 229
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=29.37 E-value=2.3e+02 Score=20.81 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=24.1
Q ss_pred ccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHH
Q 020168 247 AKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEG 288 (330)
Q Consensus 247 ~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~ 288 (330)
..++++.|..+.+.+.....-+.. ++++|..|+.
T Consensus 31 ~eLs~e~R~~lE~E~~~l~~~l~~--------~E~eL~~Lrk 64 (85)
T PF15188_consen 31 RELSPEARRSLEKELNELKEKLEN--------NEKELKLLRK 64 (85)
T ss_pred cCCChHHHHHHHHHHHHHHHHhhc--------cHHHHHHHHH
Confidence 457788888888888877766655 4566666654
No 230
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=29.22 E-value=93 Score=29.24 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=28.5
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCC--cHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTR--IPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSr--iP~V~~~l~~~f~ 42 (330)
..++.+|+++|+++++||.|++.-..+- .|..-..+...++
T Consensus 22 ~A~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~a~~va~~lG 64 (375)
T cd00829 22 EAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLG 64 (375)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEecccccccccchHHHHHHHcC
Confidence 3578899999999999999985322111 2455566777774
No 231
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=29.10 E-value=72 Score=29.53 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=34.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCC--CCcccc---CCchhhHHhHHHH
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNG--KELCKS---INPDEAVAYGAAV 62 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~--~~~~~~---ln~deaVA~GAa~ 62 (330)
.++.|.|.||...-..+++.|.+.... -++..+ .-.|.++++|||=
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAG 309 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHH
Confidence 578899999999999999999887621 122222 2358899999874
No 232
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=29.01 E-value=4.8e+02 Score=24.38 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
-++++|+++|++++|||.|+. |-....|..-..+.+.+
T Consensus 57 Aa~~ALekAGL~~~DID~IIv-Gdl~~Q~~~As~vA~~L 94 (327)
T TIGR02845 57 AVNLALKKANLKKDDVDFFLA-GDLLNQIITANFVARDL 94 (327)
T ss_pred HHHHHHHHcCCCHHHCCEEEE-eCCCCcccHHHHHHHHh
Confidence 468899999999999999774 43222344445566667
No 233
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=28.93 E-value=36 Score=32.70 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.5
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHH
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLL 37 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l 37 (330)
..++++|+++|++++||+.|..-|-+|.. +.=.+.|
T Consensus 285 ~a~~~Al~~Agi~~~dId~v~~hgtgt~~~D~~E~~al 322 (410)
T PRK07103 285 RVIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAAL 322 (410)
T ss_pred HHHHHHHHHcCCCHHHCCEEEccCCCCCCCCHHHHHHH
Confidence 35789999999999999999999999886 3444445
No 234
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=28.67 E-value=97 Score=29.80 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=26.3
Q ss_pred cHHHHHHHHc-CCCCCCCCeEEEEcCC----CCcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDA-KMDKSSVHDVVLVGGS----TRIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a-~l~~~dI~~V~lvGGs----SriP~V~~~l~~~f~ 42 (330)
+.+.++|+++ |+++.|||.|++ |-. ..-|.+-..+....|
T Consensus 33 ~A~~~AL~da~gl~~~dID~vv~-g~~~~~~~~g~~~~~~~a~~lG 77 (406)
T PRK07851 33 QMVRAALDKVPALDPTDIDDLML-GCGLPGGEQGFNMARVVAVLLG 77 (406)
T ss_pred HHHHHHHHhccCCCHHHCCEEEE-EcccccccccCCHHHHHHHHcC
Confidence 3578899996 999999999974 521 111233345666663
No 235
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=28.38 E-value=58 Score=30.06 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
.++++|+++|++++||+.+++--++-+ +.+.+.+.+
T Consensus 231 ~i~~~L~~~g~~~~did~~~~hq~~~~---~~~~~~~~l 266 (326)
T CHL00203 231 VIIKCLNALNISIDEVDWFILHQANKR---ILEAIANRL 266 (326)
T ss_pred HHHHHHHHcCCCHHHCCEEEECCCCHH---HHHHHHHHh
Confidence 478899999999999999999999843 445566666
No 236
>PRK09051 beta-ketothiolase; Provisional
Probab=28.35 E-value=1.4e+02 Score=28.69 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCCCCCCeEEE
Q 020168 3 PVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~l 23 (330)
.++.+|+++|++++|||.|++
T Consensus 34 A~~~AL~~agi~~~dID~vi~ 54 (394)
T PRK09051 34 VVREALARAGVDPDQVGHVVF 54 (394)
T ss_pred HHHHHHHHcCCCHHHcCEEEE
Confidence 478999999999999998875
No 237
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.21 E-value=1.1e+02 Score=27.61 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHhCCCCcccccceeeeccceeeEEEEeccee
Q 020168 57 AYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVM 97 (330)
Q Consensus 57 A~GAa~~a~~~s~~~~~~~~~~~~~d~~~~~igi~~~~~~~ 97 (330)
-.|-||+|..+++. .++++.|+.+.++.+.+.+|+.
T Consensus 140 Klgiay~a~~~~g~-----ed~VvsDiSSNTVtllvkdGkv 175 (332)
T COG4020 140 KLGIAYLAYLLSGS-----EDFVVSDISSNTVTLLVKDGKV 175 (332)
T ss_pred HhhHHHHHHHHcCc-----cceEEEeccCCeEEEEEEcCeE
Confidence 46889999988864 6899999999999988877754
No 238
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=28.17 E-value=6.4e+02 Score=25.46 Aligned_cols=98 Identities=14% Similarity=0.260 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhccCC--hhhHHHHHHHHHHHHHHHccCCcc
Q 020168 199 KEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEK--ISAKLP--TADKKKIEDAIEEAIQWLDGNQLA 274 (330)
Q Consensus 199 ~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~~~~--~~~~~~--~~e~~~i~~~l~e~~~Wl~~~~~a 274 (330)
++++..+...+..+...+... ......|......+|..+.... |...+. +.....+.....+..+|...|...
T Consensus 114 e~~i~~i~~~l~~L~~~e~~n---r~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~ 190 (560)
T PF06160_consen 114 EEDIKEILDELDELLESEEKN---REEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYL 190 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 334445555555554444332 2233445555556666555422 222222 256778888888889999886322
Q ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 275 ----EADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 275 ----~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
-...++..+..|+.....|-.-+.+
T Consensus 191 ~A~eil~~l~~~~~~l~~~~e~IP~l~~~ 219 (560)
T PF06160_consen 191 EAREILEKLKEETDELEEIMEDIPKLYKE 219 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3345555566666655555544433
No 239
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=28.14 E-value=99 Score=31.78 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=39.6
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHhCCCCc--------------------cccCCchhhHHhHHHHHHHHHh
Q 020168 16 SSVHDVVLVGGSTRIPKVQQLLQDFFNGKEL--------------------CKSINPDEAVAYGAAVQAAILS 68 (330)
Q Consensus 16 ~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~--------------------~~~ln~deaVA~GAa~~a~~~s 68 (330)
-+-|-++|+|-.||+|-||..+....+ .++ .+--||...+|.||-+++..+.
T Consensus 777 y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 777 YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 456889999999999999999887652 221 2223789999999998887654
No 240
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=27.64 E-value=41 Score=26.56 Aligned_cols=43 Identities=12% Similarity=0.291 Sum_probs=32.8
Q ss_pred cHHHHHHHHcCCCCCCCCeE-EEEcCCCCcHHHHHHHHHHhCCC
Q 020168 2 EPVEKCLRDAKMDKSSVHDV-VLVGGSTRIPKVQQLLQDFFNGK 44 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V-~lvGGsSriP~V~~~l~~~f~~~ 44 (330)
+-|+.+|+.+|.+++||=.+ +.+=..+..+.+.+...++|++.
T Consensus 57 ~ni~~iL~~aG~~~~dvv~~~iyl~d~~~~~~~~~~~~~~f~~~ 100 (127)
T TIGR03610 57 ETIKSVIETAGGTMDDVTFNHIFIRDWADYAAINEVYAEYFPGE 100 (127)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCCC
Confidence 34788999999999997553 45555678889999888899543
No 241
>PRK07855 lipid-transfer protein; Provisional
Probab=27.31 E-value=1.5e+02 Score=28.33 Aligned_cols=38 Identities=24% Similarity=0.209 Sum_probs=26.2
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~ 42 (330)
+.+.++|+++|++++|||.++. +..+..+ +..|.+.+|
T Consensus 30 eA~~~Al~DAgl~~~dID~~~~-~~~~~~~--~~~l~~~lG 67 (386)
T PRK07855 30 EAVLAALDDAGLAPSDVDGLVT-FTMDTNP--EIAVARALG 67 (386)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE-ecCcccc--HHHHHHHCC
Confidence 3467899999999999999975 3222222 244777774
No 242
>PRK14878 UGMP family protein; Provisional
Probab=27.18 E-value=46 Score=30.92 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHH------HHHHHHhCCCCccccCCchhhHHh
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQ------QLLQDFFNGKELCKSINPDEAVAY 58 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~------~~l~~~f~~~~~~~~ln~deaVA~ 58 (330)
.|+++|+++|+++.|||.|-+.-|.-.++.++ +.|...+ +. +...+|--++=+.
T Consensus 51 ~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~-~~-p~~~v~h~~~Ha~ 110 (323)
T PRK14878 51 LLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKY-NK-PLVPVNHCIAHIE 110 (323)
T ss_pred HHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHh-CC-CccccchHHHHHH
Confidence 57899999999999999999998776666665 3344445 33 3344555544443
No 243
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=27.08 E-value=4.2e+02 Score=23.00 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=32.4
Q ss_pred cCChhhHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHH-HHHHHHHHHHHHhcC
Q 020168 248 KLPTADKKKIEDAIEEAIQWLDGN--QLAEADEFEDKMKEL-EGICNPIIAKMYQGG 301 (330)
Q Consensus 248 ~~~~~e~~~i~~~l~e~~~Wl~~~--~~a~~ee~~~kl~~L-~~~~~~i~~R~~e~~ 301 (330)
..+|.|.+.+..++..--.|--.. -....++.+.+.+.+ .++...|..||+|-+
T Consensus 85 sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQ 141 (207)
T PF05546_consen 85 SWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQ 141 (207)
T ss_pred CCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888776544333221 112344444444443 367778899998865
No 244
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=27.07 E-value=97 Score=29.82 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a 64 (330)
.++++|+++|++.++|..|.++|... ..+...|+... .++--.|-++||.++.
T Consensus 184 ~l~~~l~~~Gl~~~di~~i~~TGyGR------~~i~~~~~ad~---iv~EItaha~GA~~L~ 236 (404)
T TIGR03286 184 AVERALEEAGVSLEDVEAIGTTGYGR------FTIGEHFGADL---IQEELTVNSKGAVYLA 236 (404)
T ss_pred HHHHHHHHcCCCccceeEEEeeeecH------HHHhhhcCCCc---eEEEEhhHHHHHHHhc
Confidence 45678889999999999999999774 33445563222 2333467889998853
No 245
>PRK07738 flagellar protein FlaG; Provisional
Probab=27.06 E-value=1.9e+02 Score=22.69 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=33.6
Q ss_pred EEEEEEeeCC-ccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHH
Q 020168 161 INVCFDIDAN-GILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKY 212 (330)
Q Consensus 161 i~v~~~~d~~-G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~ 212 (330)
..+.|+++.. |.+.|.+.|..||+.. ..++.+++-++...+.++
T Consensus 64 ~~L~F~vdeet~~~vVkVvD~~T~EVI--------RQIPpEe~L~l~~~m~e~ 108 (117)
T PRK07738 64 TSLKFELHEKLNEYYVQVVDERTNEVI--------REIPPKKLLDMYAAMMEF 108 (117)
T ss_pred CceEEEEecCCCcEEEEEEECCCCeee--------eeCCCHHHHHHHHHHHHH
Confidence 5789999885 8999999999888652 356777777777766654
No 246
>PRK08256 lipid-transfer protein; Provisional
Probab=27.00 E-value=1.5e+02 Score=28.32 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.0
Q ss_pred cHHHHHHHHcCCCCCCCCeEEE
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~l 23 (330)
..++++|+++|+++.|||.+++
T Consensus 28 ~A~~~Al~dAGl~~~dID~~~~ 49 (391)
T PRK08256 28 EAGRAALADAGIDYDAVQQAYV 49 (391)
T ss_pred HHHHHHHHHcCCChHHCCeeEE
Confidence 3578999999999999999875
No 247
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=26.83 E-value=45 Score=31.70 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=31.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhC----CCCcc--c---cCCchhhHHhHHHHHHHH
Q 020168 19 HDVVLVGGSTRIPKVQQLLQDFFN----GKELC--K---SINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 19 ~~V~lvGGsSriP~V~~~l~~~f~----~~~~~--~---~ln~deaVA~GAa~~a~~ 66 (330)
..|++.||.|-||-+.+.|.+.+. +.++. . ++.-.-++=+|+.+.|..
T Consensus 343 ~nVivtGGtSliqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILASL 399 (426)
T KOG0679|consen 343 GNVIVTGGTSLIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILASL 399 (426)
T ss_pred ccEEEecCcchhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHhcc
Confidence 789999999999999988877553 22221 1 122233666777776643
No 248
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=26.68 E-value=47 Score=24.92 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=33.3
Q ss_pred cHHHHHHHHcCCCCCCCCeE-EEEcCCCCcHHHHHHHHHHhC
Q 020168 2 EPVEKCLRDAKMDKSSVHDV-VLVGGSTRIPKVQQLLQDFFN 42 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V-~lvGGsSriP~V~~~l~~~f~ 42 (330)
+-|+.+|+.+|.+++||=.+ +.+-..+..+.+.+...++|+
T Consensus 33 ~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 33 SKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 45788999999999998554 455567889999999999996
No 249
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=26.63 E-value=89 Score=29.31 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLL 37 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l 37 (330)
.|+++|+++|++.+|||.|-..=|.-.+|.++--+
T Consensus 57 li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~ 91 (342)
T COG0533 57 LIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGA 91 (342)
T ss_pred HHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHH
Confidence 68999999999999999999999999999886544
No 250
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=26.59 E-value=35 Score=22.03 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=17.6
Q ss_pred CCCccccCCchhhHHhHHHHHH
Q 020168 43 GKELCKSINPDEAVAYGAAVQA 64 (330)
Q Consensus 43 ~~~~~~~ln~deaVA~GAa~~a 64 (330)
|-.+-..+|++||.++|.++.+
T Consensus 28 GGRLVvEl~~~Ea~~L~~~l~~ 49 (51)
T PF11314_consen 28 GGRLVVELNPDEAKELGEALKE 49 (51)
T ss_pred CcEEEEEeCHHHHHHHHHHHHh
Confidence 3456677899999999999864
No 251
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.26 E-value=6.8e+02 Score=26.47 Aligned_cols=15 Identities=13% Similarity=-0.086 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHHHHH
Q 020168 196 RLSKEEIEKMVQEAE 210 (330)
Q Consensus 196 ~ls~~ei~~~~~~~~ 210 (330)
+++.+-++++++.+.
T Consensus 493 Glp~~ii~~A~~~~~ 507 (771)
T TIGR01069 493 GIPHFIIEQAKTFYG 507 (771)
T ss_pred CcCHHHHHHHHHHHH
Confidence 566666666655543
No 252
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.09 E-value=1.3e+02 Score=27.20 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHH
Q 020168 14 DKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 63 (330)
Q Consensus 14 ~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~ 63 (330)
...++|.++| |+|.-|+++..|++.++ .. ..-+|+-+++|...+..
T Consensus 174 ~~~~~DtlVL--GCTHyPll~~~i~~~~~-~~-v~lids~~~~a~~~~~~ 219 (269)
T COG0796 174 QEAGPDTLVL--GCTHYPLLKPEIQQVLG-EH-VALIDSGAETARRLARL 219 (269)
T ss_pred hccCCCEEEE--eCcCcHHHHHHHHHHhC-CC-ceEeCCHHHHHHHHHHH
Confidence 3345777776 99999999999999994 32 34578877777766653
No 253
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.08 E-value=6.7e+02 Score=26.28 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHccCCc
Q 020168 195 GRLSKEEIEKMVQEAEKYKAE-DDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQL 273 (330)
Q Consensus 195 ~~ls~~ei~~~~~~~~~~~~~-D~~~~~~~~a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~ 273 (330)
..||..| .+++++++.+..+ +.......++++.++..-+.+...-....-...+++.++..|++.|.+
T Consensus 628 P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~---------- 696 (717)
T PF10168_consen 628 PVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQ---------- 696 (717)
T ss_pred CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHH----------
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 020168 274 AEADEFEDKMKELEGICNPI 293 (330)
Q Consensus 274 a~~ee~~~kl~~L~~~~~~i 293 (330)
..+++.+-+++++.+.+.+
T Consensus 697 -~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 697 -QGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred -HHHHHHHHHHHHHHHHHhh
No 254
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=26.07 E-value=1e+02 Score=29.39 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEE
Q 020168 3 PVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~l 23 (330)
.++.+|+++++++.+||.|++
T Consensus 33 a~~~aL~~agi~~~~Id~v~~ 53 (387)
T PRK07850 33 VQRAVLDRAGIDPGDVEQVIG 53 (387)
T ss_pred HHHHHHHHcCCCHHHCCEEEE
Confidence 578899999999999998876
No 255
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=25.80 E-value=1.4e+02 Score=28.66 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCCCCCCCeEEE
Q 020168 3 PVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~l 23 (330)
.++.+|+++|+++.+||.|++
T Consensus 33 a~~~al~~agi~~~~Id~v~~ 53 (401)
T PRK08131 33 VIRRLLEKSGFPGDDIEDVIL 53 (401)
T ss_pred HHHHHHHHcCCCHHHCCEEEE
Confidence 578899999999999999877
No 256
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=25.78 E-value=1.5e+02 Score=28.39 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCCCCCCeEEEE-----cCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLV-----GGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lv-----GGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~ 65 (330)
.++.+|+++++++++||.|++= |+....+.-.-.|..-++...+..++|.-.+...=|...|+
T Consensus 33 a~~~al~~a~l~~~~Id~vi~G~~~~~~~~~~~~ar~~~l~~gl~~~vP~~tV~~~CaSG~~Ai~~A~ 100 (390)
T PRK06504 33 VLDALVDRSGADPALIEDVIMGCVSQVGEQATNVARNAVLASKLPESVPGTSIDRQCGSSQQALHFAA 100 (390)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEEechhhHHHHHHHHHH
Confidence 5788999999999999998873 22112233333455556433455566654443333333333
No 257
>PF10020 DUF2262: Uncharacterized protein conserved in bacteria (DUF2262); InterPro: IPR019260 This entry consists of various hypothetical bacterial proteins with no known function.
Probab=25.77 E-value=1.7e+02 Score=23.75 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=17.9
Q ss_pred HHHHHHHHHHccCCc----------cchHHHHHHHH
Q 020168 259 DAIEEAIQWLDGNQL----------AEADEFEDKMK 284 (330)
Q Consensus 259 ~~l~e~~~Wl~~~~~----------a~~ee~~~kl~ 284 (330)
+++.-+.+|++++.. .|.++|.+++.
T Consensus 73 ~ll~laNdW~~~~e~~~~~~~~~~~it~e~F~~~i~ 108 (150)
T PF10020_consen 73 KLLDLANDWREDDEEEEDEEEDAPEITEEEFAKRIY 108 (150)
T ss_pred HHHHHHHHHhhccccccccccccCccCHHHHhhhcE
Confidence 467777779987522 67778777653
No 258
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=25.72 E-value=47 Score=31.66 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKV 33 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V 33 (330)
.++++|+++|++++|||.+++-+..|.+..+
T Consensus 263 a~~~al~~aGi~~~did~~e~~d~ft~~~~~ 293 (389)
T PRK06064 263 AAEKAYKMAGIEPKDIDVAEVHDCFTIAEIL 293 (389)
T ss_pred HHHHHHHHcCCCHHHCCEEEecCCCcHHHHH
Confidence 4688999999999999999999998865443
No 259
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=25.66 E-value=2.7e+02 Score=26.38 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCCCCCCCe
Q 020168 3 PVEKCLRDAKMDKSSVHD 20 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~ 20 (330)
.+.++|+++|+++.+++.
T Consensus 78 aa~~Al~dAgl~~~~~~~ 95 (407)
T TIGR03150 78 AAKEAVEDSGLDIEEEDA 95 (407)
T ss_pred HHHHHHHhcCCCcccCCc
Confidence 467899999999999876
No 260
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=25.55 E-value=50 Score=25.61 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=31.4
Q ss_pred cHHHHHHHHcCCCCCCCCeE-EEEcCCCCcHHHHHHHHHHhCCC
Q 020168 2 EPVEKCLRDAKMDKSSVHDV-VLVGGSTRIPKVQQLLQDFFNGK 44 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V-~lvGGsSriP~V~~~l~~~f~~~ 44 (330)
+-|..+|+.+|.+++||-.+ +.+-.....+.+.+...++|++.
T Consensus 51 ~ni~~~L~~aG~~~~dVvk~~vyl~d~~~~~~~~~~~~~~f~~~ 94 (119)
T cd06154 51 EIIEAALAEAGASLEDVVRTRMYVTDIADFEAVGRAHGEVFGDI 94 (119)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 34678899999998888654 33444677788888888888643
No 261
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=25.43 E-value=2.8e+02 Score=20.37 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHccC
Q 020168 201 EIEKMVQEAEKYKA--EDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGN 271 (330)
Q Consensus 201 ei~~~~~~~~~~~~--~D~~~~~~~~a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~ 271 (330)
++..++..+..+.. .+.-.....+++..+++.+..+|+.+.+ .. ..=+....+....+.+|+.++
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~--~~----~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED--AA----DQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHC
Confidence 44455554444332 2333344556666677777777666654 11 123445556666666666555
No 262
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=25.37 E-value=1.1e+02 Score=30.38 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred CcHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCch-----hhHHhHHHHHHHHHhCC
Q 020168 1 MEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPD-----EAVAYGAAVQAAILSGE 70 (330)
Q Consensus 1 i~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~d-----eaVA~GAa~~a~~~s~~ 70 (330)
++.+.++++..| +..|.|.||...-..+++.|.+.+....+...+.|. .++++|+|.+....++.
T Consensus 234 ~~~~~~~~~~~g-----~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g~ 303 (535)
T PRK09605 234 TEVTERALAHTG-----KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAGD 303 (535)
T ss_pred HHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcCC
No 263
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=25.33 E-value=60 Score=29.88 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHH------HHhCCCCccccCCchhhHHh
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQ------DFFNGKELCKSINPDEAVAY 58 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~------~~f~~~~~~~~ln~deaVA~ 58 (330)
.|+++|+++|++++|||.|-+.-|.--.+.+|--+. ..+ +. +...++.-++-|.
T Consensus 55 ~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~-~~-p~~~v~hl~~ha~ 114 (305)
T TIGR00329 55 LLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSL-DK-PLIGVNHLLGHIY 114 (305)
T ss_pred HHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHh-CC-CEeecccHHHHHH
Confidence 578999999999999999999999988888875443 333 33 3344566666554
No 264
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=25.26 E-value=2.6e+02 Score=30.43 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHH
Q 020168 225 AKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGI 289 (330)
Q Consensus 225 a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~ 289 (330)
....++..+..++.+|.++.|....+++..++-++.+.+.++ ..+.++++|..|+++
T Consensus 937 ~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~--------~l~~l~~~l~~l~~~ 993 (995)
T PTZ00419 937 KLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNE--------EIKQLEQAIEELKSL 993 (995)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence 344566667788888988889888888877777777765443 244555566666543
No 265
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=25.08 E-value=2.3e+02 Score=22.32 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=30.4
Q ss_pred EEEEEEeeC-CccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHH
Q 020168 161 INVCFDIDA-NGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAE 210 (330)
Q Consensus 161 i~v~~~~d~-~G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~ 210 (330)
-.+.|++|. -|.+.|++.+.+||+.. ...+.+++-++.+.+.
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVI--------RqIPpee~L~l~~r~~ 109 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVI--------RQIPPEEALELAARMR 109 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcch--------hhCChHHHHHHHHHHH
Confidence 568888966 58899999999998753 3566666665555444
No 266
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=25.04 E-value=51 Score=24.89 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=31.8
Q ss_pred cHHHHHHHHcCCCCCCCCeE-EEEcCCCCcHHHHHHHHHHhCC
Q 020168 2 EPVEKCLRDAKMDKSSVHDV-VLVGGSTRIPKVQQLLQDFFNG 43 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V-~lvGGsSriP~V~~~l~~~f~~ 43 (330)
.-|+.+|+.+|.+++||-.+ +.+=.....+.+.+...++|++
T Consensus 36 ~nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~~~f~~ 78 (105)
T cd06150 36 AKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAWVPP 78 (105)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHcCC
Confidence 45788999999999988554 3444557788888888888853
No 267
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=24.97 E-value=6.8e+02 Score=24.73 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020168 216 DDEHKKKVEAKNALENYAYNMRNTIKD 242 (330)
Q Consensus 216 D~~~~~~~~a~N~LE~~i~~~r~~l~~ 242 (330)
+++.++...--|.+++|+..|+.+.++
T Consensus 301 ~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 301 REKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 444455555578888888888887765
No 268
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=24.77 E-value=1.2e+02 Score=27.75 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=36.3
Q ss_pred CCCCCCCeEEEEcCCCCcHHHHHHHHHHhC---CCCccccCCchhhHHhHHHH
Q 020168 13 MDKSSVHDVVLVGGSTRIPKVQQLLQDFFN---GKELCKSINPDEAVAYGAAV 62 (330)
Q Consensus 13 l~~~dI~~V~lvGGsSriP~V~~~l~~~f~---~~~~~~~ln~deaVA~GAa~ 62 (330)
.-+..+|.|+|+||-.|=-.+-++|.++.. ..-+.---|-.+|-|.||.-
T Consensus 292 vL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 292 VLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred hcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 346789999999999999999999988652 11222223556788888864
No 269
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=24.60 E-value=85 Score=28.58 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=30.0
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
..|+++|+++|++++||+.+++-.++-++ .+.+.+.+
T Consensus 227 ~~i~~~l~~~g~~~~di~~~~~h~~~~~~---~~~~~~~l 263 (320)
T cd00830 227 ESIEEALEKAGLTPDDIDWFVPHQANLRI---IEAVAKRL 263 (320)
T ss_pred HHHHHHHHHcCCCHHHCCEEEECCCCHHH---HHHHHHHh
Confidence 35788999999999999999999987544 45567777
No 270
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=24.59 E-value=1.4e+02 Score=26.73 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=35.9
Q ss_pred CchhhHHhHHHHHHHHHhCCCCcccccceeeec-cceeeEEEEecceeEEEeeCCCCCCce
Q 020168 51 NPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDV-TPLSLGLETAGGVMTVLIPRNTTIPTK 110 (330)
Q Consensus 51 n~deaVA~GAa~~a~~~s~~~~~~~~~~~~~d~-~~~~igi~~~~~~~~~l~~~g~~lP~~ 110 (330)
|.--|+.+||.+.... + ....+.+.|+ .+|+++..+.+++..=||.-.|..=..
T Consensus 148 DTg~AAvlGal~d~~v-~-----~~~~~~~vniGN~HTlaa~v~~~rI~GvfEHHT~~l~~ 202 (254)
T PF08735_consen 148 DTGPAAVLGALCDPEV-S-----SREGIIVVNIGNGHTLAALVKDGRIYGVFEHHTGMLTP 202 (254)
T ss_pred cCHHHHHhhhhcChhh-h-----ccCCeEEEEeCCccEEEEEEeCCEEEEEEecccCCCCH
Confidence 4444555666554433 1 1245556665 689999999999999999988875443
No 271
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=24.54 E-value=2.6e+02 Score=19.81 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q 020168 227 NALENYAYNMRNTI 240 (330)
Q Consensus 227 N~LE~~i~~~r~~l 240 (330)
++|...|..+...|
T Consensus 11 ~~l~~Wl~~~e~~l 24 (105)
T PF00435_consen 11 DELLDWLQETEAKL 24 (105)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 272
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=24.52 E-value=52 Score=31.75 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.++++|+++|++++||+.|+.-|=+|.. +.=.+.|++.|+.
T Consensus 283 a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~al~~~fg~ 325 (414)
T PRK08722 283 AMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIKRALGE 325 (414)
T ss_pred HHHHHHHHcCCCHHHcCEEEccCccCCCCCHHHHHHHHHHhcc
Confidence 4789999999999999999999977754 5556778889953
No 273
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=24.49 E-value=3.6e+02 Score=25.03 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=20.5
Q ss_pred HHHHHccCCccchHHHHHHHHHHHHHHHHHHHH
Q 020168 264 AIQWLDGNQLAEADEFEDKMKELEGICNPIIAK 296 (330)
Q Consensus 264 ~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R 296 (330)
..+|+-.....-+.++++.+++|+.+.+.|..-
T Consensus 59 ~~~~FL~~Fp~~k~~Le~~I~kL~~lAd~idk~ 91 (313)
T PF05461_consen 59 DRERFLKEFPQLKEELEEHIRKLRALADEIDKV 91 (313)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544445667777777777777776644
No 274
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=24.42 E-value=48 Score=31.47 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHhCC
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRI--PKVQQLLQDFFNG 43 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSri--P~V~~~l~~~f~~ 43 (330)
.++++|++++++++||+.|++-|=++.+ +.-.+.|.+.|+.
T Consensus 280 ~i~~al~~agi~~~dId~v~~h~tgt~~~d~~E~~al~~~~~~ 322 (406)
T cd00834 280 AMRAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIKRVFGE 322 (406)
T ss_pred HHHHHHHHcCCCHHHCCEEecccccCccccHHHHHHHHHHhcc
Confidence 5789999999999999999999977753 3345567888854
No 275
>PF03095 PTPA: Phosphotyrosyl phosphate activator (PTPA) protein; InterPro: IPR004327 Phosphotyrosyl phosphatase activator (PTPA) proteins stimulate the phosphotyrosyl phosphatase (PTPase) activity of the dimeric form of protein phosphatase 2A (PP2A). PTPase activity in PP2A (in vitro) is relatively low when compared to the better recognised phosphoserine/ threonine protein phosphorylase activity. The specific biological role of PTPA is unknown, Basal expression of PTPA depends on the activity of a ubiquitous transcription factor, Yin Yang 1 (YY1). The tumour suppressor protein p53 can inhibit PTPA expression through an unknown mechanism that negatively controls YY1 [].; GO: 0019211 phosphatase activator activity; PDB: 2HV7_H 2HV6_A 2IXM_A 2G62_A 2IXN_B 2IXO_B 2IXP_B.
Probab=24.21 E-value=5.5e+02 Score=23.65 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=52.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccCChhhHHHHHHHHHHHHHHHccCCcc-------chHHHHHHHHH
Q 020168 215 EDDEHKKKVEAKNALENYAYNMRNTIKDEKIS--AKLPTADKKKIEDAIEEAIQWLDGNQLA-------EADEFEDKMKE 285 (330)
Q Consensus 215 ~D~~~~~~~~a~N~LE~~i~~~r~~l~~~~~~--~~~~~~e~~~i~~~l~e~~~Wl~~~~~a-------~~ee~~~kl~~ 285 (330)
.|-..-.++.|..++-.+|..+-+.+...... ..-..+...++.++|+..+.|+++.+.. ....|..=.+.
T Consensus 10 ~D~~~f~~S~Ay~~i~~FI~~l~~sV~g~~~~~~~~~~S~~v~~ll~iL~~l~~~i~e~PP~~~~p~RFGN~AfR~w~~~ 89 (299)
T PF03095_consen 10 EDMEKFKRSQAYADIIGFIQNLNESVKGKKLSTDDYPVSENVQKLLDILDTLEQWIDEIPPVDQGPSRFGNKAFRTWHDK 89 (299)
T ss_dssp CHHHHHHTSHHHHHHHHHHHHHHHHHTT-STTTSTSSSSHHHHHHHHHHHHHHHHHHTS---SS-STTSS-THHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHccCCCCCCcccccChHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHH
Confidence 45556667889999999999999988874343 2222357889999999999999986221 22344444445
Q ss_pred HHHHHHHHHH
Q 020168 286 LEGICNPIIA 295 (330)
Q Consensus 286 L~~~~~~i~~ 295 (330)
|++-...+..
T Consensus 90 l~~~~~~ll~ 99 (299)
T PF03095_consen 90 LEEEAPSLLE 99 (299)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 276
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=24.04 E-value=76 Score=29.94 Aligned_cols=45 Identities=22% Similarity=0.101 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHhCCCCcccc---CCchhhHHhHHH
Q 020168 17 SVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKS---INPDEAVAYGAA 61 (330)
Q Consensus 17 dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~---ln~deaVA~GAa 61 (330)
++|.|++.||-+..+.+++.|.+.+.-..+... -+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 789999999999999999999887743222121 244667777765
No 277
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=23.92 E-value=1.3e+02 Score=28.62 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCCCCCCeEEEE
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLV 24 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lv 24 (330)
-+..+|+++|++++|||.|+..
T Consensus 31 Aa~~Al~dAgl~~~dID~iv~~ 52 (386)
T PRK08313 31 AIDRALADAGLTWDDIDAVVVG 52 (386)
T ss_pred HHHHHHHHcCCCHHHCCEEEEe
Confidence 4678999999999999999854
No 278
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.84 E-value=6.7e+02 Score=26.52 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 252 ADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 252 ~e~~~i~~~l~e~~~Wl~~~~~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
++.+.++..++++.+=++....+--+.|+...+.|+..-..+...+.+
T Consensus 563 ~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ 610 (1118)
T KOG1029|consen 563 NEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGE 610 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666665544555667776666666554444444433
No 279
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=23.66 E-value=82 Score=28.77 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCc
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKEL 46 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~ 46 (330)
.++++|+++|++++||+.+++-.++.+ +.+.+.+.+ +.+.
T Consensus 224 ~~~~~l~~~g~~~~di~~~~~h~~~~~---~~~~~~~~l-gi~~ 263 (318)
T TIGR00747 224 VVEETLEANGLDPEDIDWFVPHQANLR---IIEALAKRL-ELDM 263 (318)
T ss_pred HHHHHHHHcCCCHHHCCEEEECCCCHH---HHHHHHHHc-CCCH
Confidence 477889999999999999999888644 445577777 4443
No 280
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=23.44 E-value=5.3e+02 Score=22.95 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHccCC-------------ccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 252 ADKKKIEDAIEEAIQWLDGNQ-------------LAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 252 ~e~~~i~~~l~e~~~Wl~~~~-------------~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
+....+...|.++++||++-. ....++++.|...|++....+..-+.+
T Consensus 185 ~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~ 245 (264)
T PF06008_consen 185 DDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKE 245 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777520 114456666666666655555544444
No 281
>PRK08868 flagellar protein FlaG; Provisional
Probab=23.42 E-value=2.3e+02 Score=23.12 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=33.0
Q ss_pred EEEEEEeeCC-ccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHH
Q 020168 161 INVCFDIDAN-GILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEK 211 (330)
Q Consensus 161 i~v~~~~d~~-G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~ 211 (330)
..+.|++|.+ |.+-|.+.|..||... ..++.+++-++.+.+.+
T Consensus 89 ~~L~F~vdeetgr~VVkViD~~T~EVI--------RQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 89 KGLSFRVDEESGRDVVTIYEASTGDII--------RQIPDEEMLEVLRRLAE 132 (144)
T ss_pred CceEEEEecCCCCEEEEEEECCCCcee--------eeCCCHHHHHHHHHHHH
Confidence 5789999886 8888999999888653 35777777777766654
No 282
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.41 E-value=58 Score=31.49 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=35.3
Q ss_pred cHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHH--HHHHHhCC
Q 020168 2 EPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQ--LLQDFFNG 43 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~--~l~~~f~~ 43 (330)
..++.+|+++|++++||++|-.-|=||..--..+ .|+..|+.
T Consensus 280 ~am~~AL~~Agl~~~~idYinaHgTsT~~nD~~E~~ai~~vfg~ 323 (412)
T COG0304 280 RAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVFGE 323 (412)
T ss_pred HHHHHHHHHcCCCHhHCCEEeCCCccCCCccHHHHHHHHHHhcc
Confidence 4689999999999999999999999998766655 45778863
No 283
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=23.36 E-value=53 Score=28.94 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCC-CCcHHHHHHHHHHhC-CCCccc-cCCchhhHHhHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGS-TRIPKVQQLLQDFFN-GKELCK-SINPDEAVAYGAAVQ 63 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGs-SriP~V~~~l~~~f~-~~~~~~-~ln~deaVA~GAa~~ 63 (330)
.+.++|+++|++++||+.|+.|=-+ -..|-+--.|-+.+| ...+.+ .++-.=|.+=.+++.
T Consensus 107 Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~LgL~~~v~R~~i~~~GC~gg~~~L~ 170 (226)
T PF00195_consen 107 AARKALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINRLGLRPDVQRTPIFGMGCAGGAAGLR 170 (226)
T ss_dssp HHHHHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHHHT--TTSEEEEEES-GGGHHHHHHH
T ss_pred HHHHHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhcCCCCCCcEEEEEeccchhhHHHHHH
Confidence 4678999999999999999988633 468999989988884 223332 245555655555553
No 284
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.21 E-value=85 Score=24.57 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=32.0
Q ss_pred cHHHHHHHHcCCCCCCCCeE--EEEcCCC-----CcHHHHHHHHHHhCC
Q 020168 2 EPVEKCLRDAKMDKSSVHDV--VLVGGST-----RIPKVQQLLQDFFNG 43 (330)
Q Consensus 2 ~~i~~~l~~a~l~~~dI~~V--~lvGGsS-----riP~V~~~l~~~f~~ 43 (330)
+-|+.+|+.+|.+++||=.+ .+++... .++.+.+...++|+.
T Consensus 48 ~ni~~~L~~aG~~~~dVvk~~vyl~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (126)
T cd06151 48 KRIETILQSQGLTMGDVVKMRVFLVADPALDGKMDFAGFMKAYRQFFGT 96 (126)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEecCccccchhhHHHHHHHHHHHhcc
Confidence 45788999999999998654 5665443 688888888899954
No 285
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.17 E-value=39 Score=30.94 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
.|+++|+++|++++||+.+++-.++. .+.+.+.+.+
T Consensus 224 ~i~~~l~~~g~~~~di~~~~~h~~~~---~~~~~~~~~l 259 (319)
T PRK09352 224 VAREALEAAGLTPEDIDWLVPHQANL---RIIDATAKKL 259 (319)
T ss_pred HHHHHHHHcCCCHHHCCEEEECCCCH---HHHHHHHHHh
Confidence 57889999999999999999987764 3445666666
No 286
>PRK09604 UGMP family protein; Validated
Probab=23.07 E-value=90 Score=29.13 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHH------HHhCCCCccccCCchhhHHhHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQ------DFFNGKELCKSINPDEAVAYGAA 61 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~------~~f~~~~~~~~ln~deaVA~GAa 61 (330)
.|+++|+++++++.|||.|.+.-|.-..+.+|--+. ..+ +. +...++.-++-|..|.
T Consensus 58 ~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~-~i-pl~~v~h~~~ha~~a~ 120 (332)
T PRK09604 58 LIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALAL-NK-PLIGVNHLEGHLLAPF 120 (332)
T ss_pred HHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHh-CC-CEEeecCHHHHHHhhh
Confidence 488999999999999999999999888888865443 334 33 3445566666665333
No 287
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.04 E-value=96 Score=23.93 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=32.6
Q ss_pred cHHHHHHHHcC-CCCCCCCe--EEEEcCC--CCcHHHHHHHHHHhCCC
Q 020168 2 EPVEKCLRDAK-MDKSSVHD--VVLVGGS--TRIPKVQQLLQDFFNGK 44 (330)
Q Consensus 2 ~~i~~~l~~a~-l~~~dI~~--V~lvGGs--SriP~V~~~l~~~f~~~ 44 (330)
.-|+.+|+.+| .+++||=. |.|+.-+ ...|.+.+...++|++.
T Consensus 41 ~Nl~~~L~~aG~~~~~dVvk~tvyltd~~~~~~~~~~~~~~~~~f~~~ 88 (114)
T cd06152 41 DNVELALKAAGGKGWEQVYKVNSYHVDIKNEEAFGLMVENFKKWMPNH 88 (114)
T ss_pred HHHHHHHHHhCCCCHHHEEEEEEEEecCCcHHHHHHHHHHHHHHcCCC
Confidence 34788999999 99999854 5666642 67888888888888543
No 288
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=22.95 E-value=3.5e+02 Score=27.54 Aligned_cols=57 Identities=9% Similarity=0.224 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhhhhhcc--CChhhHHHHHHHHHHHHHHHcc-CCccc-hHHHHHHHHHHHHH
Q 020168 232 YAYNMRNTIKDEKISAK--LPTADKKKIEDAIEEAIQWLDG-NQLAE-ADEFEDKMKELEGI 289 (330)
Q Consensus 232 ~i~~~r~~l~~~~~~~~--~~~~e~~~i~~~l~e~~~Wl~~-~~~a~-~ee~~~kl~~L~~~ 289 (330)
|+-.+.+.|+.+ |..+ ....+...+...|..+.+||+. ....+ .+...++++.|++.
T Consensus 502 FL~FVE~aLD~g-f~~~~~~~~~~IA~~LsQLKrVNdWLD~v~~~~~~~~~~~E~ierLrkK 562 (579)
T PF06075_consen 502 FLKFVEKALDAG-FKKSRGEDDGQIAGMLSQLKRVNDWLDEVGSGSNESEELVETIERLRKK 562 (579)
T ss_pred HHHHHHHHHhcc-chhcccCCCcchHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 444444445442 3222 2235677899999999999997 32222 35566677777654
No 289
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=22.91 E-value=5.6e+02 Score=27.31 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020168 216 DDEHKKKVEAKNALENYAYNMRNTIK 241 (330)
Q Consensus 216 D~~~~~~~~a~N~LE~~i~~~r~~l~ 241 (330)
++..+...++|..+..|+..+-....
T Consensus 492 eEI~rLm~eLR~A~~~ym~~LAeq~~ 517 (820)
T PF13779_consen 492 EEIARLMQELREAMQDYMQALAEQAQ 517 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344556666666666666555443
No 290
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=22.87 E-value=4.2e+02 Score=23.55 Aligned_cols=13 Identities=15% Similarity=0.631 Sum_probs=10.4
Q ss_pred EEEEeeCCccEEE
Q 020168 163 VCFDIDANGILNV 175 (330)
Q Consensus 163 v~~~~d~~G~l~v 175 (330)
..|.++.+|.|.+
T Consensus 26 ~~FWv~Ed~~Idi 38 (241)
T PF09321_consen 26 TFFWVKEDGVIDI 38 (241)
T ss_pred HheeeccCCcccc
Confidence 4588888888877
No 291
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=22.71 E-value=4.3e+02 Score=23.56 Aligned_cols=38 Identities=16% Similarity=0.482 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHccCC-c---cchHHHHHHHHHHHHHHHH
Q 020168 255 KKIEDAIEEAIQWLDGNQ-L---AEADEFEDKMKELEGICNP 292 (330)
Q Consensus 255 ~~i~~~l~e~~~Wl~~~~-~---a~~ee~~~kl~~L~~~~~~ 292 (330)
..++++..++-.||.++. . .+.+.|++++.-+++++..
T Consensus 143 ePmKel~~kyP~wL~~n~~~l~~ed~~rY~~Q~~~v~~I~~~ 184 (248)
T PF04614_consen 143 EPMKELRDKYPEWLEENKSKLSAEDYERYEKQYELVKEICAI 184 (248)
T ss_dssp HHHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666542 2 2444555555555544433
No 292
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=22.71 E-value=2.3e+02 Score=21.19 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 020168 284 KELEGICNPIIAKMYQGGGA 303 (330)
Q Consensus 284 ~~L~~~~~~i~~R~~e~~~~ 303 (330)
.+|...++.|..||++..+.
T Consensus 47 ~eL~~aFeeiAaRFR~g~~~ 66 (98)
T PRK13848 47 AELQAAFEELAKRFRGGKGA 66 (98)
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 46777888899999997744
No 293
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.51 E-value=6.8e+02 Score=26.49 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=7.4
Q ss_pred CCCHHHHHHHHHHH
Q 020168 196 RLSKEEIEKMVQEA 209 (330)
Q Consensus 196 ~ls~~ei~~~~~~~ 209 (330)
+++.+-++++++.+
T Consensus 498 Glp~~ii~~A~~~~ 511 (782)
T PRK00409 498 GLPENIIEEAKKLI 511 (782)
T ss_pred CcCHHHHHHHHHHH
Confidence 56665555555443
No 294
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=22.49 E-value=1.2e+02 Score=28.67 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred CcHHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCCccccCCchhhHHhHHHHHHH
Q 020168 1 MEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 65 (330)
Q Consensus 1 i~~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~f~~~~~~~~ln~deaVA~GAa~~a~ 65 (330)
++.+.++++.. .+..|+++||-+.-.++|+.|++......+...+-|-.-..==||+.|.
T Consensus 252 ~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~~ctDNaaMIa~ 311 (345)
T PTZ00340 252 VEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERYCIDNGAMIAY 311 (345)
T ss_pred HHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChHhhhhhHHHHHH
No 295
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=22.30 E-value=75 Score=29.42 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHH------HhCCCCccccCCchhhHHhHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQD------FFNGKELCKSINPDEAVAYGA 60 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~------~f~~~~~~~~ln~deaVA~GA 60 (330)
.|+++|++++++.+|||.|.+.-|.--.+.+|--+.- .+ + .+...++.-++.|..|
T Consensus 56 ~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~-~-~p~~~v~h~~aha~~a 117 (314)
T TIGR03723 56 LIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALAL-N-KPLIGVNHLEGHLLAP 117 (314)
T ss_pred HHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHh-C-CCEEecccHHHHHHhh
Confidence 5789999999999999999999999988888755532 23 3 3455667777766533
No 296
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=21.96 E-value=73 Score=30.30 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=22.5
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHh
Q 020168 15 KSSVHDVVLVGGSTRIPKVQQLLQDFF 41 (330)
Q Consensus 15 ~~dI~~V~lvGGsSriP~V~~~l~~~f 41 (330)
+.=...|+|+||+|.+|-+.+.+.+..
T Consensus 288 k~L~~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 288 KDLYENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred HHHHhheEEeCCcccchhHHHHHHHHH
Confidence 334467999999999999999888765
No 297
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=21.63 E-value=69 Score=28.87 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEcCCCCcHHHHHHHHHH--h--CCCCccccCCchhhHHhHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDF--F--NGKELCKSINPDEAVAYGAAV 62 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lvGGsSriP~V~~~l~~~--f--~~~~~~~~ln~deaVA~GAa~ 62 (330)
.|+++|++++++++|||.|.+.-|.-....+|--+.-. + .-..+...++..++-+..+.+
T Consensus 36 ~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~~~Pli~v~~l~a~a~~~~~ 99 (268)
T PF00814_consen 36 LIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALALNIPLIGVSHLEAHALSARL 99 (268)
T ss_dssp HHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHhCCCeEeeccHHHHHHhHhh
Confidence 57999999999999999999999988888887655432 1 112345566767766655544
No 298
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.25 E-value=86 Score=23.24 Aligned_cols=21 Identities=29% Similarity=0.716 Sum_probs=17.7
Q ss_pred eEEEEcC-CCCcHHHHHHHHHH
Q 020168 20 DVVLVGG-STRIPKVQQLLQDF 40 (330)
Q Consensus 20 ~V~lvGG-sSriP~V~~~l~~~ 40 (330)
.|++||| ..+.+.+++.++++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~ 22 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKY 22 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHc
Confidence 4899999 78888998888874
No 299
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.09 E-value=1.2e+03 Score=26.16 Aligned_cols=15 Identities=13% Similarity=0.483 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHc
Q 020168 255 KKIEDAIEEAIQWLD 269 (330)
Q Consensus 255 ~~i~~~l~e~~~Wl~ 269 (330)
+++.+++.++.++|.
T Consensus 1471 ~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHHHhc
Confidence 334444444444443
No 300
>PF02500 DNA_pack_N: Probable DNA packing protein, N-terminus ; InterPro: IPR003499 This family includes proteins that are probably involved in DNA packing in Herpesviridae. This domain is normally found at the N terminus of the protein.; GO: 0006323 DNA packaging
Probab=20.83 E-value=3.8e+02 Score=24.48 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHHHHHHHccC---C--------ccchHHHHHHH
Q 020168 223 VEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGN---Q--------LAEADEFEDKM 283 (330)
Q Consensus 223 ~~a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~---~--------~a~~ee~~~kl 283 (330)
...+|++++.+...+.....+.| ..|..-+.....||... . ..+.|.+|+.+
T Consensus 83 ~~~~~~y~s~~~t~~~~~~~~~F---------~qL~~Fi~~fs~~L~~~f~~~~~~~k~~~~~~LEpFQK~l 145 (284)
T PF02500_consen 83 AEHRNEYYSAMNTFRALYRSPAF---------KQLRNFIINFSSFLNGSFRDKSPPEKRAKRGTLEPFQKML 145 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCchH---------HHHHHHHHHHHHHHhcCCccccccccccchhhhhHHHHHH
Confidence 34667777777777666555434 57888999999999875 2 23566666654
No 301
>PRK02224 chromosome segregation protein; Provisional
Probab=20.68 E-value=7.7e+02 Score=26.19 Aligned_cols=13 Identities=8% Similarity=0.274 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHH
Q 020168 198 SKEEIEKMVQEAE 210 (330)
Q Consensus 198 s~~ei~~~~~~~~ 210 (330)
+..+...++..+.
T Consensus 147 ~p~~R~~ii~~l~ 159 (880)
T PRK02224 147 TPSDRQDMIDDLL 159 (880)
T ss_pred CHHHHHHHHHHHh
Confidence 4445555554444
No 302
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=20.62 E-value=2.2e+02 Score=27.65 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCCCCCCeEEEE---cCCCCcHHHHHHHHHHhC--CCCccccCCchhhHHhHHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSVHDVVLV---GGSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAAVQAAI 66 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~lv---GGsSriP~V~~~l~~~f~--~~~~~~~ln~deaVA~GAa~~a~~ 66 (330)
.++.+|+++++++++||.|++= +.... +.+.+.+.-..+ ...+..++|.-.+...=|...|+.
T Consensus 38 a~~~al~~agl~~~~Id~vi~G~~~~~~~~-~~~ar~~~l~aGl~~~~p~~~V~~~CaSG~~A~~~a~~ 105 (430)
T TIGR02446 38 VVSELLARSEIDPKLIEQLVFGQVVQMPEA-PNIAREIVLGTGMNVHTDAYSVTRACATSFQSAVNVAE 105 (430)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEeccCcCcc-chHHHHHHHhCCCCCCCchhhhhhhhhHHHHHHHHHHH
Confidence 5788999999999999998772 11111 334444433232 123455566555444444444443
No 303
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=20.61 E-value=2.7e+02 Score=18.41 Aligned_cols=16 Identities=6% Similarity=0.472 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 020168 227 NALENYAYNMRNTIKD 242 (330)
Q Consensus 227 N~LE~~i~~~r~~l~~ 242 (330)
..++.||..+|..|++
T Consensus 7 ~~~d~yI~~Lk~kLd~ 22 (56)
T PF08112_consen 7 STIDKYISILKSKLDE 22 (56)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3466777777777654
No 304
>PRK08452 flagellar protein FlaG; Provisional
Probab=20.57 E-value=2.8e+02 Score=21.96 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=31.9
Q ss_pred EEEEEEeeCC-ccEEEEEEeccCCcceeeeeccCCCCCCHHHHHHHHHHHHHH
Q 020168 161 INVCFDIDAN-GILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKY 212 (330)
Q Consensus 161 i~v~~~~d~~-G~l~v~~~~~~t~~~~~~~i~~~~~~ls~~ei~~~~~~~~~~ 212 (330)
..+.|.++.. +.+.|.+.+..||+.. ..++.+++-++.+.+.++
T Consensus 71 ~~L~F~~de~~~~~vVkVvD~~T~eVI--------RqIP~Ee~L~l~~~m~e~ 115 (124)
T PRK08452 71 TNIRFGYNDKIKGLVVSVKEANGGKVI--------REIPSKEAIELMEYMRDV 115 (124)
T ss_pred CceEEEEcCCCCcEEEEEEECCCCcee--------eeCCCHHHHHHHHHHHHh
Confidence 5788888775 7799999999888653 356677777766665543
No 305
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=20.47 E-value=2.2e+02 Score=28.02 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCCCCC--CeEEEEcCCCCcHHHHHHHHHH
Q 020168 3 PVEKCLRDAKMDKSSV--HDVVLVGGSTRIPKVQQLLQDF 40 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI--~~V~lvGGsSriP~V~~~l~~~ 40 (330)
.|++-.++||++++|| +.+++.|.++++--+++.++..
T Consensus 71 ~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~ 110 (475)
T PRK10719 71 LIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMAL 110 (475)
T ss_pred HHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHh
Confidence 4677788999999988 5799999999999999999873
No 306
>PLN02943 aminoacyl-tRNA ligase
Probab=20.44 E-value=3.8e+02 Score=29.08 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCChhhHHHHHHHHHH
Q 020168 225 AKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEE 263 (330)
Q Consensus 225 a~N~LE~~i~~~r~~l~~~~~~~~~~~~e~~~i~~~l~e 263 (330)
....++..+..++.+|.++.|....+++..++-++.+.+
T Consensus 897 ~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~ 935 (958)
T PLN02943 897 RLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAE 935 (958)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHH
Confidence 344577777888889988889888888777666666664
No 307
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.42 E-value=9e+02 Score=27.05 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhccCChhhHHHHHHHHHHHHHHHccC------
Q 020168 199 KEEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGN------ 271 (330)
Q Consensus 199 ~~ei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i~~~r~~l~~-~~~~~~~~~~e~~~i~~~l~e~~~Wl~~~------ 271 (330)
..++..+.+....+.. .......+.++++-...-.+...++. -.-....-...+..+...+++.+.|+...
T Consensus 691 ~~~l~~~~~e~~~~~~--~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~Gv 768 (1201)
T PF12128_consen 691 EEELKQLKQELEELLE--ELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGV 768 (1201)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHh
Q 020168 272 QLAEADEFEDKMKELEGICNPIIAKMYQ 299 (330)
Q Consensus 272 ~~a~~ee~~~kl~~L~~~~~~i~~R~~e 299 (330)
.......|+.+++.|+..+..|..+-.+
T Consensus 769 D~~~I~~l~~~i~~L~~~l~~ie~~r~~ 796 (1201)
T PF12128_consen 769 DPERIQQLKQEIEQLEKELKRIEERRAE 796 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 308
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.24 E-value=1.2e+02 Score=21.28 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020168 276 ADEFEDKMKELEGICNPIIAKMYQGG 301 (330)
Q Consensus 276 ~ee~~~kl~~L~~~~~~i~~R~~e~~ 301 (330)
..++++||+++++.++..-..+.++.
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~ 39 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEVAQRI 39 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444444
No 309
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=20.12 E-value=2.2e+02 Score=27.26 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCCCCCCeEEE
Q 020168 3 PVEKCLRDAKMDKSSVHDVVL 23 (330)
Q Consensus 3 ~i~~~l~~a~l~~~dI~~V~l 23 (330)
-+..+|+++|+++.|||.++.
T Consensus 32 A~~~Al~DAgl~~~dID~~~~ 52 (388)
T PRK08142 32 VAKGALADAGLSLADVDGYFC 52 (388)
T ss_pred HHHHHHHHcCCCHHHCCEEEE
Confidence 467899999999999999653
Done!