BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020169
         (330 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
           Saccharomyces Cerevisiae
 pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
           Saccharomyces Cerevisiae
          Length = 400

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 155 NEGAQLYFRGQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK 211
            EG +LY   + + +T   + +A  +       L+ C  G +AS+  C   RDL+P+
Sbjct: 294 EEGIELY--DEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPR 348


>pdb|3F6R|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin
 pdb|3F6R|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin
 pdb|3F6R|C Chain C, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin
 pdb|3F6R|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin
 pdb|3F6S|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin Alternate Conformers
 pdb|3F6S|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin Alternate Conformers
 pdb|3F6S|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin Alternate Conformers
 pdb|3F6S|E Chain E, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin Alternate Conformers
 pdb|3F6S|F Chain F, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin Alternate Conformers
 pdb|3F6S|H Chain H, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin Alternate Conformers
 pdb|3F6S|I Chain I, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin Alternate Conformers
 pdb|3F6S|G Chain G, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
           Flavodoxin Alternate Conformers
 pdb|3F90|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
           Flavodoxin
 pdb|3F90|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
           Flavodoxin
 pdb|3F90|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
           Flavodoxin
 pdb|3F90|E Chain E, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
           Flavodoxin
 pdb|3F90|F Chain F, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
           Flavodoxin
 pdb|3F90|H Chain H, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
           Flavodoxin
 pdb|3F90|I Chain I, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
           Flavodoxin
 pdb|3F90|G Chain G, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
           Flavodoxin
          Length = 148

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 164 GQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLASILHCDEFRDLFPKTTKVKCLSDAGM 223
           G  + L    D  A+ + +   A+L GCSA G+  +   D+F  LF +  ++     AG 
Sbjct: 30  GHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGL---AGR 86

Query: 224 FLDAVDVSGGHTLRNMFAGVVSLQEVQKNLPITCTSQ 260
            + A   SG     +    V +++E  K L  T  ++
Sbjct: 87  KVAAF-ASGDQEYEHFCGAVPAIEERAKELGATIIAE 122


>pdb|3ZV0|C Chain C, Structure Of The Shq1p-Cbf5p Complex
 pdb|3ZV0|D Chain D, Structure Of The Shq1p-Cbf5p Complex
          Length = 195

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 155 NEGAQLYFRGQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK 211
            EG +LY   + + +T   + +A  +       L+ C  G +AS+  C   RDL+P+
Sbjct: 103 EEGIELY--DEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPR 157


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,711,825
Number of Sequences: 62578
Number of extensions: 395453
Number of successful extensions: 786
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 4
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)