BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020169
         (330 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
          Length = 503

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 9/174 (5%)

Query: 60  AVCLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQL 117
             C DG+  GY++    GS    WL+ LEGG +C    NC  R +T R   S+K      
Sbjct: 106 VTCNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTR 163

Query: 118 PFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDSQNEGAQLY-FRGQRIWLTAMQDLM 176
             TGILS++ EENP ++N N V + YC    +SG S       Y F G  I    +++L+
Sbjct: 164 TGTGILSSQPEENPHWWNANMVFIPYCSSDVWSGASPKSDKNEYAFMGSLIIQEVVRELL 223

Query: 177 AKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFLD 226
            KG+  A   LL+G SAGG   +L+ D   +L  +    + +V+ L+D+G FLD
Sbjct: 224 GKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLD 277


>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
          Length = 496

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 9/174 (5%)

Query: 60  AVCLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQL 117
             C DG+  GY++    GS    WL+ LEGG +C    NC  R  T R   S++   +  
Sbjct: 99  VTCNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTR 156

Query: 118 PFTGILSNKAEENPDFFNWNRVKLRYCDGASFSG-DSQNEGAQLYFRGQRIWLTAMQDLM 176
             TGILS++ EENP ++N N V + YC    +SG  S++E  +  F G  I    +++L+
Sbjct: 157 TGTGILSSQPEENPYWWNANMVFIPYCSSDVWSGASSKSEKNEYAFMGALIIQEVVRELL 216

Query: 177 AKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFLD 226
            +G+  A   LL+G SAGG   +L+ D   +   K      +V+ L+D+G FLD
Sbjct: 217 GRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLD 270


>sp|P33671|SDC3_RAT Syndecan-3 OS=Rattus norvegicus GN=Sdc3 PE=2 SV=3
          Length = 442

 Score = 32.7 bits (73), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 16  SASGFFEDLDARETSLSYLENDA-AATSEPLMVPLTLIQGADSK 58
           S SG+FE     ET++ ++ + A AA + P M+P T+IQ  D+ 
Sbjct: 80  SGSGYFEQESGLETAMRFIPDIALAAPTAPAMLPTTVIQPVDTP 123


>sp|Q64519|SDC3_MOUSE Syndecan-3 OS=Mus musculus GN=Sdc3 PE=2 SV=2
          Length = 442

 Score = 32.3 bits (72), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 16  SASGFFEDLDARETSLSYLENDA-AATSEPLMVPLTLIQGADSK 58
           S SG+FE     ET++ ++ + A AA + P M+P T+IQ  D+ 
Sbjct: 80  SGSGYFEQESGLETAMRFIPDMALAAPTAPAMLPTTVIQPVDTP 123


>sp|O59796|VPS3_SCHPO Vacuolar protein sorting-associated protein 3
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=vps3 PE=3 SV=2
          Length = 910

 Score = 31.2 bits (69), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 92  WCNTIRNCVYRKTTRRGSAKFMEKQL---PFTGILSNKAEENPDFFNWN 137
           WCN +  C+   +T  G + F+++ L   PF+  LS   E+ PD +N N
Sbjct: 812 WCNLLEKCI---STGDGCSDFIKELLYRRPFSYTLSYVCEQIPDHWNLN 857


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,850,402
Number of Sequences: 539616
Number of extensions: 5086514
Number of successful extensions: 10202
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10193
Number of HSP's gapped (non-prelim): 6
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)