BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020170
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VEE|A Chain A, Nmr Structure Of The Hypothetical Rhodanese Domain
At4g01050 From Arabidopsis Thaliana
pdb|2DCQ|A Chain A, Fully Automated Nmr Structure Determination Of The
Rhodanese Homology Domain At4g01050(175-295) From
Arabidopsis Thaliana
Length = 134
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 95/122 (77%), Positives = 108/122 (88%)
Query: 141 ARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLK 200
A+NAY KLG D +AQLLDIRA +FRQVGSP+++GLGK+ VS VY G+DKPGFLKKLSLK
Sbjct: 9 AKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLK 68
Query: 201 FKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKA 260
FK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY IKDGAEGPRGW+NS LPWI PKK
Sbjct: 69 FKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKT 128
Query: 261 LG 262
G
Sbjct: 129 SG 130
>pdb|2FSX|A Chain A, Crystal Structure Of Rv0390 From M. Tuberculosis
Length = 148
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVY---KGDDKPGFLKKLSLK 200
A+ L D+ A L+D+R E+R VG PD+ LG+ V + + G FL +L +
Sbjct: 12 AWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDR 71
Query: 201 F----KEPENTTLFILDKFDGNSEL-VAELVTINGFKNAYTIKDG------AEGPR---G 246
+ E +F+ GN + AE+ T G AY + DG AEG R G
Sbjct: 72 IPADADQHERPVIFLCRS--GNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATG 129
Query: 247 WMNSGLPW 254
W GLPW
Sbjct: 130 WRAVGLPW 137
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL 199
S ++AY L ++ L+D+R P E + +G PDV+ + +G +P L K L
Sbjct: 26 SPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKN-----YKHMSRGKLEP-LLAKSGL 79
Query: 200 KFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLP 253
++P + + K + L + + GFK Y + G + W+ GLP
Sbjct: 80 DPEKP----VVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD---KWLEEGLP 126
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
pdb|3KDZ|B Chain B, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
Length = 537
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 247 WMNSGL-PWIPPKKALGLDLSNLTETISGAIGEG 279
++N G+ P IP +LG DL+ L+ S IGEG
Sbjct: 135 YLNEGITPAIPEIGSLGXDLAPLSHVASTLIGEG 168
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
pdb|2OHY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
Length = 539
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 247 WMNSGL-PWIPPKKALGLDLSNLTETISGAIGEG 279
++N G+ P IP +LG DL+ L+ S IGEG
Sbjct: 137 YLNEGITPAIPEIGSLGXDLAPLSHVASTLIGEG 170
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam
pdb|2RJR|B Chain B, Substrate Mimic Bound To Sgtam
pdb|2RJS|A Chain A, Sgtam Bound To Substrate Mimic
pdb|2RJS|B Chain B, Sgtam Bound To Substrate Mimic
Length = 537
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 247 WMNSGL-PWIPPKKALGLDLSNLTETISGAIGEG 279
++N G+ P IP +LG DL+ L+ S IGEG
Sbjct: 135 YLNEGITPAIPEIGSLGXDLAPLSHVASTLIGEG 168
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
pdb|3KDY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
Length = 537
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 247 WMNSGL-PWIPPKKALGLDLSNLTETISGAIGEG 279
++N G+ P IP +LG DL+ L+ S IGEG
Sbjct: 135 YLNEGITPAIPEIGSLGXDLAPLSHVASTLIGEG 168
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
pdb|2QVE|B Chain B, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
Length = 526
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 247 WMNSGL-PWIPPKKALGLDLSNLTETISGAIGEG 279
++N G+ P IP +LG DL+ L+ S IGEG
Sbjct: 124 YLNEGITPAIPEIGSLGXDLAPLSHVASTLIGEG 157
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 172 DVRGLGKRPVSIVYKG----DDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVT 227
D+ L K+PV V G D P LK+LS + + P TTL L FD +++
Sbjct: 237 DLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLG 296
Query: 228 INGFKNA 234
++G A
Sbjct: 297 MHGCATA 303
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 172 DVRGLGKRPVSIVYKG----DDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVT 227
D+ L K+PV V G D P LK+LS + + P TTL L FD +++
Sbjct: 284 DLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLG 343
Query: 228 INGFKNA 234
++G A
Sbjct: 344 MHGCATA 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,889,493
Number of Sequences: 62578
Number of extensions: 298865
Number of successful extensions: 590
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 17
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)