BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020170
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M158|STR4_ARATH Rhodanese-like domain-containing protein 4, chloroplastic
OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2
Length = 466
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/330 (67%), Positives = 257/330 (77%), Gaps = 12/330 (3%)
Query: 1 MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKSVHGG 60
MEAL A P+SVL ++RSEPRK SLP L S + Q E F K +GG
Sbjct: 1 MEALKTATFSPMSVLSEKRSEPRK-----PFSLPNLFPPKSQRPISQ---ESFLKRFNGG 52
Query: 61 LVLLSSVL--GTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVT 118
L LL+SVL T A++LTYEEALQQS +S+S D+ G I+ + +F T+NPL IAGGV
Sbjct: 53 LALLTSVLSSATAPAKSLTYEEALQQSMTTSSS-FDSDGLIEGISNFVTDNPLVIAGGVA 111
Query: 119 ILAVPLVLSQVLNK-PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLG 177
LAVP VLSQVLNK PKSWGVESA+NAY KLG D +AQLLDIRA +FRQVGSP+++GLG
Sbjct: 112 ALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLG 171
Query: 178 KRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTI 237
K+ VS VY G+DKPGFLKKLSLKFK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY I
Sbjct: 172 KKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAI 231
Query: 238 KDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGV 297
KDGAEGPRGW+NS LPWI PKK L LDLS+LT++ISG GE S+G SV L +AAAAGL V
Sbjct: 232 KDGAEGPRGWLNSSLPWIEPKKTLSLDLSSLTDSISGVFGESSDGVSVALGVAAAAGLSV 291
Query: 298 LAFSEIETILQILGSAALVQFASKKLLFAE 327
AF+EIETILQ+LGSAALVQ A KKLLFAE
Sbjct: 292 FAFTEIETILQLLGSAALVQLAGKKLLFAE 321
>sp|Q56XR7|STR4A_ARATH Rhodanese-like domain-containing protein 4A, chloroplastic
OS=Arabidopsis thaliana GN=STR4A PE=2 SV=1
Length = 264
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 2/173 (1%)
Query: 85 SAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNA 144
S+ S+ +D + ++ +F + P +AG V V V+ + + SA NA
Sbjct: 69 SSDPSSGKIDLESILVTIDNFFNKYPFFVAGCTFTYLV--VYPAVMFYLRKYKPISAMNA 126
Query: 145 YAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEP 204
+ KL +++ +QLLDIR + SP+++ LGK V + + +D+ GFL K+ F +
Sbjct: 127 FRKLKNESDSQLLDIRDVKTLALLASPNLKFLGKSSVQVPFSENDEEGFLTKVKGSFSDA 186
Query: 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257
ENT + +LD FDGNS VAEL+ NGFK AY I+ GA G GW+ +PP
Sbjct: 187 ENTVVCVLDNFDGNSSKVAELLIKNGFKEAYYIRGGARGKNGWLAIQEELLPP 239
>sp|Q9ZCV8|Y600_RICPR Uncharacterized protein RP600 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP600 PE=4 SV=1
Length = 123
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S+ + + FL ++
Sbjct: 11 AYNMLILNNNAFLVDVRTQEEWKQVGIPHLDNKNKVIFLSLQLNKNFEDNFLSIIN---- 66
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
E +T +F L + S + A + G+KN Y I DG EG +GW + LPW
Sbjct: 67 EKIDTAIFFLCRSGYRSFIAANFIANIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|Q9AKI4|Y600_RICRI Uncharacterized protein RP600 homolog OS=Rickettsia rickettsii PE=4
SV=1
Length = 123
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR-PVSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S D + FL ++ K
Sbjct: 11 AYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKMLFLSWQLNKDFEDNFLSIINDKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+ +F L + S + A +T G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---HAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|P0A3K3|YDNAA_RICMO Uncharacterized protein in dnaA 5'region OS=Rickettsia montana PE=4
SV=1
Length = 123
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S D + FL ++ K
Sbjct: 11 AYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKVIFLSWQLNKDFEDNFLSIVNDKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+ +F L + S + A +T G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---HAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|P0A3K2|Y915_RICCN Uncharacterized protein RC0915 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC0915 PE=4 SV=1
Length = 123
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S D + FL ++ K
Sbjct: 11 AYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKVIFLSWQLNKDFEDNFLSIVNDKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+ +F L + S + A +T G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---HAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|Q9FN48|CAS_ARATH Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana
GN=CAS PE=1 SV=1
Length = 387
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 190 KPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249
K +LKK++ + + + ILD + ++++VA+ + + G+KN Y + DG G RGW+
Sbjct: 292 KISYLKKIN------KGSNIIILDSYTDSAKIVAKTLKVLGYKNCYIVTDGFSGGRGWLQ 345
Query: 250 SGL 252
S L
Sbjct: 346 SRL 348
>sp|Q6BLM0|ATG15_DEBHA Putative lipase ATG15 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG15 PE=3
SV=2
Length = 615
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 191 PGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTI--KDGAEGPRG-W 247
P L K+ L++++ + I D D ++ V L TI+ NAY KD E R W
Sbjct: 188 PALLNKIELEWEDEHE--IPIPDVKDRDT--VVSLATISS--NAYVKFPKDDKEKKRSDW 241
Query: 248 MNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIET 305
++ G PW+P + ++ + + G + ++ +V + I +G G++ ET
Sbjct: 242 IDVGDPWVPDENHTDINFGWADDGLRGHVFVSTDNKTVVIGIKGTSGAGLIGTGPEET 299
>sp|Q93WI0|STR12_ARATH Rhodanese-like/PpiC domain-containing protein 12 OS=Arabidopsis
thaliana GN=At5g19370 PE=2 SV=1
Length = 299
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 124 LVLSQVLNKPKSWGVESARNAYAKLGDDA---SAQLLDIRAPVEFRQVGSPDVRGLGKRP 180
L L QVL++ + ++K+ D AQL+D+R P E P + R
Sbjct: 176 LHLLQVLSEREPVKDIQVEELHSKMQDPVFMDEAQLIDVREPNEIEIASLPGFKVFPLRQ 235
Query: 181 VSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDG 240
G P KL+ PE T F+L K G S VA + GFK+ Y I G
Sbjct: 236 F-----GTWAPDITSKLN-----PEKDT-FVLCKVGGRSMQVANWLQSQGFKSVYNITGG 284
Query: 241 AEG 243
+
Sbjct: 285 IQA 287
>sp|C5BP37|MRAY_TERTT Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Teredinibacter
turnerae (strain ATCC 39867 / T7901) GN=mraY PE=3 SV=1
Length = 360
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 20/150 (13%)
Query: 164 EFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKF--KEPENTTLFI-----LDKFD 216
++R+V + +GL P Y GF+ ++L + P TTL+I +
Sbjct: 116 DYRKVVEKNSKGL---PAKWKYFWQSACGFIVAIALFVTAQTPAETTLYIPFFKNVAWQM 172
Query: 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDL-----SNLTET 271
G + + I GF NA + DG +G + +P + ALG+ +N +E
Sbjct: 173 GVLYVFVTYLMIVGFSNAVNLTDGLDGL-----AIMPTVMVGSALGVIAYLVGNANFSEY 227
Query: 272 ISGAIGEGSEGFSVTLAIAAAAGLGVLAFS 301
+ A GS V A A AGLG L F+
Sbjct: 228 LHIAFVPGSGELVVYCAALAGAGLGFLWFN 257
>sp|Q12769|NU160_HUMAN Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1
SV=3
Length = 1436
Score = 34.7 bits (78), Expect = 0.99, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 229 NGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLA 288
N N+Y D AE R ++N L ++A+ L ++E + +G+G + F +
Sbjct: 1323 NWLINSYKKVDAAELLRLYLNYDLL----EEAVDL----VSEYVDAVLGKGHQYFGIEFP 1374
Query: 289 IAAAAGLGVLAFSEIETILQILG 311
++A A + L +S I+ +LQ LG
Sbjct: 1375 LSATAPMVWLPYSSIDQLLQALG 1397
>sp|Q9Z0W3|NU160_MOUSE Nuclear pore complex protein Nup160 OS=Mus musculus GN=Nup160 PE=1
SV=2
Length = 1402
Score = 34.7 bits (78), Expect = 1.0, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 229 NGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLA 288
N N+Y D AE R ++N L ++A+ L ++E + +G+G + F +
Sbjct: 1289 NWLINSYKKVDAAELLRLYLNYDLL----EEAVDL----VSEYVDAVLGKGHQYFGIEFP 1340
Query: 289 IAAAAGLGVLAFSEIETILQILG 311
++A A + L +S I+ +LQ LG
Sbjct: 1341 LSATAPMVWLPYSSIDQLLQALG 1363
>sp|B1LB32|ASPD_THESQ Probable L-aspartate dehydrogenase OS=Thermotoga sp. (strain RQ2)
GN=nadX PE=3 SV=1
Length = 241
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 228 INGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTL 287
I G +IKD E R + I P K+LGLDL T G++ E S+ F +
Sbjct: 110 IGGLDVLSSIKDFVETVR------IETIKPPKSLGLDLKGKTVVFEGSVEEASKLFPRNI 163
Query: 288 AIAAAAGLGVLAFSEIETIL 307
+A+ GL ++ F +++ +
Sbjct: 164 NVASTIGL-IVGFEKVKVTI 182
>sp|Q9X1X6|ASPD_THEMA L-aspartate dehydrogenase OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=nadX PE=1 SV=1
Length = 241
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 249 NSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIETIL 307
N + I P K+LGLDL T G++ E S+ F + +A+ GL ++ F +++ +
Sbjct: 125 NVRIETIKPPKSLGLDLKGKTVVFEGSVEEASKLFPRNINVASTIGL-IVGFEKVKVTI 182
>sp|Q7VFP9|DAPA_HELHP 4-hydroxy-tetrahydrodipicolinate synthase OS=Helicobacter hepaticus
(strain ATCC 51449 / 3B1) GN=dapA PE=3 SV=1
Length = 293
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 38 TSASNKTTQQNFLECF---AKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVD 94
T NK TQ+ E + A +V ++L + TG++ + + L+ + + + +
Sbjct: 104 TPYYNKPTQEGLFEHYKAVANAVEIPVMLYNVPSRTGVSIEIETAKRLRDACKNIYAIKE 163
Query: 95 ASGFIDSVISFGTENP-LAIAGGVTILAVPLV 125
A+G ++ V++FG E P LA+ G ++ P++
Sbjct: 164 AAGLMERVVAFGAEVPNLALLSGEDVINYPIL 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,115,517
Number of Sequences: 539616
Number of extensions: 4750137
Number of successful extensions: 10608
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 10589
Number of HSP's gapped (non-prelim): 49
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)